Query 032665
Match_columns 136
No_of_seqs 164 out of 653
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 06:34:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032665.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032665hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1tzy_C Histone H3; histone-fol 100.0 5.2E-61 1.8E-65 355.9 7.4 136 1-136 1-136 (136)
2 2yfv_A Histone H3-like centrom 100.0 1.6E-48 5.3E-53 276.0 6.8 96 37-132 2-100 (100)
3 3nqu_A Histone H3-like centrom 100.0 2.9E-48 9.9E-53 288.3 7.5 111 23-135 23-136 (140)
4 3r45_A Histone H3-like centrom 100.0 1.7E-48 6E-53 293.3 6.4 112 22-135 38-152 (156)
5 2hue_B Histone H3; mini beta s 100.0 1.1E-37 3.6E-42 211.2 7.5 77 60-136 1-77 (77)
6 3nqj_A Histone H3-like centrom 100.0 3.2E-37 1.1E-41 211.0 7.7 75 61-135 2-78 (82)
7 2l5a_A Histone H3-like centrom 100.0 1.4E-33 4.8E-38 224.1 7.0 76 60-135 9-87 (235)
8 2ly8_A Budding yeast chaperone 99.9 9.9E-27 3.4E-31 169.1 8.2 73 62-134 1-114 (121)
9 1b67_A Protein (histone HMFA); 99.8 2.5E-21 8.7E-26 126.9 5.7 64 63-131 3-66 (68)
10 1ku5_A HPHA, archaeal histon; 99.8 6.9E-19 2.4E-23 116.1 6.0 64 62-130 6-69 (70)
11 1n1j_A NF-YB; histone-like PAI 99.6 1.7E-16 5.9E-21 109.7 6.3 74 57-133 3-76 (93)
12 1id3_B Histone H4; nucleosome 99.3 2.2E-12 7.7E-17 90.9 6.1 69 61-134 27-95 (102)
13 1tzy_D Histone H4-VI; histone- 99.3 2.1E-12 7.3E-17 90.9 6.0 72 58-134 25-96 (103)
14 2yfw_B Histone H4, H4; cell cy 99.3 2E-12 6.7E-17 91.1 5.8 72 58-134 25-96 (103)
15 2hue_C Histone H4; mini beta s 99.3 2E-12 7E-17 87.9 4.4 69 61-134 9-77 (84)
16 2nqb_D Histone H2B; nucleosome 99.3 6.9E-12 2.4E-16 91.0 6.9 65 64-132 31-99 (123)
17 1tzy_B Histone H2B; histone-fo 99.3 7.2E-12 2.5E-16 91.2 6.9 65 64-132 34-102 (126)
18 1f1e_A Histone fold protein; a 99.2 1E-11 3.5E-16 93.3 6.1 69 58-131 78-146 (154)
19 3b0c_T CENP-T, centromere prot 99.2 3E-11 1E-15 86.2 7.6 70 60-134 5-74 (111)
20 3b0c_W CENP-W, centromere prot 99.2 3.7E-11 1.3E-15 80.2 6.1 66 62-131 4-69 (76)
21 1taf_B TFIID TBP associated fa 99.1 1E-10 3.4E-15 77.5 6.4 65 62-131 6-70 (70)
22 1f1e_A Histone fold protein; a 99.1 1.2E-10 4.1E-15 87.5 5.9 68 63-134 5-72 (154)
23 1taf_A TFIID TBP associated fa 99.1 5.2E-10 1.8E-14 73.6 7.2 63 70-133 5-67 (68)
24 3v9r_A MHF1, uncharacterized p 98.9 2.5E-09 8.7E-14 73.8 6.9 66 65-130 11-78 (90)
25 4dra_A Centromere protein S; D 98.9 3.6E-09 1.2E-13 75.8 7.0 62 68-131 33-94 (113)
26 2byk_B Chrac-14; nucleosome sl 98.9 4.6E-09 1.6E-13 76.5 7.5 72 59-133 6-77 (128)
27 1jfi_B DR1 protein, transcript 98.9 4.2E-09 1.4E-13 80.8 7.1 73 57-133 10-82 (179)
28 3b0b_B CENP-S, centromere prot 98.9 4.2E-09 1.4E-13 74.8 6.2 67 65-131 18-86 (107)
29 3vh5_A CENP-S; histone fold, c 98.8 1.1E-08 3.6E-13 75.7 6.8 67 65-131 18-86 (140)
30 2jss_A Chimera of histone H2B. 98.8 2.4E-08 8.3E-13 77.0 8.4 69 64-132 1-69 (192)
31 1n1j_B NF-YC; histone-like PAI 98.7 2E-08 6.7E-13 69.7 4.6 79 49-131 4-84 (97)
32 4g92_C HAPE; transcription fac 98.6 1.4E-07 4.7E-12 67.8 6.5 69 61-130 37-105 (119)
33 2r10_A Chromatin structure-rem 98.5 1.3E-08 4.3E-13 84.9 0.0 50 3-52 3-52 (361)
34 2l5a_A Histone H3-like centrom 98.4 7E-07 2.4E-11 70.9 7.7 54 81-134 175-228 (235)
35 2f8n_G Core histone macro-H2A. 98.4 4.9E-07 1.7E-11 65.1 6.3 67 60-130 20-86 (120)
36 2nqb_C Histone H2A; nucleosome 98.4 5.5E-07 1.9E-11 65.2 5.8 67 60-130 21-87 (123)
37 1tzy_A Histone H2A-IV; histone 98.3 6.8E-07 2.3E-11 65.2 5.8 67 60-130 23-89 (129)
38 2f8n_K Histone H2A type 1; nuc 98.3 8.5E-07 2.9E-11 66.2 5.3 68 59-130 41-108 (149)
39 1h3o_B Transcription initiatio 98.3 3.1E-06 1.1E-10 56.6 7.3 66 61-130 4-69 (76)
40 1jfi_A Transcription regulator 98.3 1E-06 3.5E-11 61.2 4.9 64 66-130 12-75 (98)
41 1f66_C Histone H2A.Z; nucleoso 98.3 1.1E-06 3.7E-11 64.0 5.2 68 60-130 25-92 (128)
42 1id3_C Histone H2A.1; nucleoso 98.2 8.3E-07 2.9E-11 64.9 4.3 67 60-130 23-89 (131)
43 2jss_A Chimera of histone H2B. 98.1 5.2E-06 1.8E-10 63.9 5.6 68 60-130 103-170 (192)
44 2byk_A Chrac-16; nucleosome sl 97.9 2E-05 6.8E-10 58.1 5.9 65 65-130 19-84 (140)
45 2x4w_B Histone H3.2; transcrip 97.2 0.00014 4.8E-09 38.4 1.6 24 25-48 3-26 (26)
46 3a1b_A DNA (cytosine-5)-methyl 92.7 0.022 7.4E-07 42.7 0.1 21 2-22 1-21 (159)
47 3avr_B Histone H3; cupin super 92.4 0.06 2.1E-06 28.0 1.6 25 18-42 1-25 (26)
48 4dra_E Centromere protein X; D 92.2 0.73 2.5E-05 30.9 7.2 65 61-128 11-76 (84)
49 3b0b_C CENP-X, centromere prot 90.7 1.3 4.4E-05 29.4 7.2 65 62-128 8-72 (81)
50 1r4v_A Hypothetical protein AQ 85.3 1.2 4.2E-05 33.5 4.8 71 55-130 17-89 (171)
51 1wwi_A Hypothetical protein TT 82.9 1.6 5.6E-05 32.1 4.5 64 62-130 2-65 (148)
52 3ksy_A SOS-1, SON of sevenless 82.4 3 0.0001 38.7 7.0 66 60-130 102-167 (1049)
53 2ly8_A Budding yeast chaperone 78.3 1.8 6.2E-05 30.8 3.3 29 81-109 61-89 (121)
54 3uk6_A RUVB-like 2; hexameric 74.9 14 0.00047 28.7 8.0 51 81-131 275-329 (368)
55 3k1j_A LON protease, ATP-depen 70.9 20 0.00067 30.7 8.6 50 82-131 312-374 (604)
56 3v9r_B MHF2, uncharacterized p 68.9 3.5 0.00012 27.8 2.7 66 63-131 2-75 (88)
57 1g8p_A Magnesium-chelatase 38 68.8 18 0.00063 27.6 7.3 51 81-131 264-321 (350)
58 1h3o_A Transcription initiatio 66.5 5.5 0.00019 26.0 3.2 53 62-115 2-54 (75)
59 1bh9_B TAFII28; histone fold, 62.3 31 0.0011 22.8 7.9 64 63-131 17-81 (89)
60 2v1u_A Cell division control p 49.5 55 0.0019 24.9 7.0 49 82-130 220-274 (387)
61 3kw6_A 26S protease regulatory 46.4 22 0.00077 21.9 3.5 30 101-130 42-71 (78)
62 2c9o_A RUVB-like 1; hexameric 45.8 68 0.0023 26.2 7.3 51 82-132 383-437 (456)
63 2qby_A CDC6 homolog 1, cell di 44.9 99 0.0034 23.4 8.4 49 81-129 215-269 (386)
64 3bos_A Putative DNA replicatio 43.0 70 0.0024 22.4 6.3 48 81-129 190-240 (242)
65 2chg_A Replication factor C sm 40.6 79 0.0027 21.5 6.1 47 82-130 178-224 (226)
66 1njg_A DNA polymerase III subu 37.0 40 0.0014 23.3 4.1 47 82-129 202-248 (250)
67 2dzn_B 26S protease regulatory 36.8 38 0.0013 21.1 3.5 27 104-130 40-66 (82)
68 1ixz_A ATP-dependent metallopr 36.6 33 0.0011 25.1 3.7 31 99-129 223-253 (254)
69 3vlf_B 26S protease regulatory 35.1 41 0.0014 21.4 3.5 30 101-130 40-69 (88)
70 3aji_B S6C, proteasome (prosom 31.7 47 0.0016 20.5 3.3 30 101-130 40-69 (83)
71 2qby_B CDC6 homolog 3, cell di 30.8 1.7E+02 0.0057 22.3 7.1 47 82-130 216-268 (384)
72 1lv7_A FTSH; alpha/beta domain 30.4 45 0.0015 24.5 3.5 32 100-131 220-251 (257)
73 1jr3_D DNA polymerase III, del 29.9 79 0.0027 24.3 5.0 63 68-132 147-209 (343)
74 2krk_A 26S protease regulatory 29.3 59 0.002 20.7 3.5 72 40-130 7-79 (86)
75 1iy2_A ATP-dependent metallopr 26.6 61 0.0021 24.2 3.7 30 100-129 248-277 (278)
76 1eoq_A GAG polyprotein capsid 25.7 78 0.0027 21.4 3.7 17 64-80 7-23 (96)
77 1fnn_A CDC6P, cell division co 24.7 2.3E+02 0.0078 21.4 8.4 49 82-130 212-272 (389)
78 4b4t_I 26S protease regulatory 22.5 78 0.0027 26.7 3.9 32 99-130 390-421 (437)
79 2eqb_B RAB guanine nucleotide 22.3 85 0.0029 21.2 3.4 30 89-118 48-77 (97)
80 3ksy_A SOS-1, SON of sevenless 22.2 83 0.0028 29.1 4.3 38 66-107 21-58 (1049)
81 3qb5_K Translin-associated pro 21.7 1.6E+02 0.0054 23.2 5.4 26 82-107 113-138 (290)
82 3ts9_A Interferon-induced heli 21.3 1.5E+02 0.0053 21.2 4.8 17 64-80 6-22 (138)
83 2kru_A Light-independent proto 21.0 1E+02 0.0036 19.1 3.4 49 82-131 3-52 (63)
84 3iz6_V 40S ribosomal protein S 20.3 1.1E+02 0.0039 21.0 3.7 40 32-77 18-57 (108)
85 2dsy_A Hypothetical protein TT 20.1 96 0.0033 19.8 3.2 22 87-108 47-68 (87)
No 1
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=100.00 E-value=5.2e-61 Score=355.87 Aligned_cols=136 Identities=96% Similarity=1.332 Sum_probs=93.7
Q ss_pred CCcccccccccCCCCCCCcchhhhhcccCCCCCCCCCCCcccCCCchhhHHHhhhhhhhhhhhhhchhHHHHHHHHhhhh
Q 032665 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFK 80 (136)
Q Consensus 1 Martk~~a~ks~g~kap~k~~~~k~~~~~~p~~~~~~k~~r~~~g~~~l~EIr~~q~st~llipk~pF~Rlvrei~~~~~ 80 (136)
||||||+|++++||++|+|++++++++++.|..+++++++||+||+++|+|||+||+||+||||++||+|||+||++++.
T Consensus 1 MARtk~tarkstggkaprk~l~~k~a~k~~p~~~~~kk~~r~rpgt~alrEIr~yQkst~lLIpk~PF~RLVREI~~~~~ 80 (136)
T 1tzy_C 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK 80 (136)
T ss_dssp -----------------------------------------CCHHHHHHHHHHHHHHCCSCCSCHHHHHHHHHHHHHHHC
T ss_pred CCCCccccccCCCCCCCCccccccccccCCCCCCCCCCCCCCCCchhHHHHHHHhhcchhhhhccchHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHHHhcccC
Q 032665 81 TDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136 (136)
Q Consensus 81 ~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~kDiqla~rir~~~~ 136 (136)
+++|||++|+++|||++|+|||+||||+|+||+||||||||++|||||++|||+++
T Consensus 81 ~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~rirg~~~ 136 (136)
T 1tzy_C 81 TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136 (136)
T ss_dssp TTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHTCCC
T ss_pred hhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHHHHHHhCcCC
Confidence 99999999999999999999999999999999999999999999999999999864
No 2
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=100.00 E-value=1.6e-48 Score=276.02 Aligned_cols=96 Identities=65% Similarity=1.004 Sum_probs=67.0
Q ss_pred CCCcccCCCchhhHHHhhhhhhhhhhhhhchhHHHHHHHHhhhhc---cccccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032665 37 KKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKT---DLRFQSHAVLALQEAAEAYLVGLFEDTNLCAI 113 (136)
Q Consensus 37 ~k~~r~~~g~~~l~EIr~~q~st~llipk~pF~Rlvrei~~~~~~---~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~ 113 (136)
++++||+||+++|+|||+||+||+||||++||+||||||.+++.+ ++|||++|+++||||+|+|||+||||+|+||+
T Consensus 2 ~~~~r~rpgt~alrEIr~yQkst~llIpk~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~ 81 (100)
T 2yfv_A 2 ARGTRYKPTDLALAEIRKYQRSTDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLAL 81 (100)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcchHHHHHHhhcccchhhhccccHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999999999999999976 89999999999999999999999999999999
Q ss_pred hcCccccChhhHHHHHHHh
Q 032665 114 HAKRVTIMPKDIQLARRIR 132 (136)
Q Consensus 114 HakRvTi~~kDiqla~rir 132 (136)
||||||||++|||||++||
T Consensus 82 HAkRvTi~~kDiqLa~rir 100 (100)
T 2yfv_A 82 HAKRITIMRKDMQLARRIR 100 (100)
T ss_dssp HTTCSEECHHHHHHHHHCC
T ss_pred HcCCccCCHHHHHHHHHhC
Confidence 9999999999999999986
No 3
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=100.00 E-value=2.9e-48 Score=288.33 Aligned_cols=111 Identities=58% Similarity=0.855 Sum_probs=72.8
Q ss_pred hhhcccCCCCCCCCCCC-cccCCCchhhHHHhhhhhhhhhhhhhchhHHHHHHHHhhhh--ccccccHHHHHHHHHHHHH
Q 032665 23 TKAARKSAPTTGGVKKP-HRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFK--TDLRFQSHAVLALQEAAEA 99 (136)
Q Consensus 23 ~k~~~~~~p~~~~~~k~-~r~~~g~~~l~EIr~~q~st~llipk~pF~Rlvrei~~~~~--~~~r~~~~Al~aLqea~E~ 99 (136)
.+++++++|.+|+++++ ++|+||+ |+|||+||+||+|||||+||+|||+||.+++. .++|||++|+++||||+|+
T Consensus 23 ~~aa~~~~~~~g~~~~~~~r~rpg~--LrEIR~yQkst~LLIpKlPF~RLVREI~~~~~~~~~~Rfq~~Al~ALQEAaEa 100 (140)
T 3nqu_A 23 TPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEA 100 (140)
T ss_dssp --------------------------------------CCCSCTTHHHHHHHHHHHHHHTTCCCEECHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCcc--HHHHHHhccccccccccccHHHHHHHHHHHhcccccceecHHHHHHHHHHHHH
Confidence 35678888888877655 5899998 99999999999999999999999999999997 5899999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCccccChhhHHHHHHHhccc
Q 032665 100 YLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 135 (136)
Q Consensus 100 ~lv~lfe~a~~~a~HakRvTi~~kDiqla~rir~~~ 135 (136)
|||+||||+|+||+||||||||++|||||.+|||+.
T Consensus 101 yLv~LFEdanlcAiHAkRVTIm~kDiqLArrirg~~ 136 (140)
T 3nqu_A 101 FLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGLE 136 (140)
T ss_dssp HHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHcCcccccHHHHHHHHHhcccc
Confidence 999999999999999999999999999999999975
No 4
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=100.00 E-value=1.7e-48 Score=293.27 Aligned_cols=112 Identities=57% Similarity=0.848 Sum_probs=74.0
Q ss_pred hhhhcccCCCCCCCCCCC-cccCCCchhhHHHhhhhhhhhhhhhhchhHHHHHHHHhhhh--ccccccHHHHHHHHHHHH
Q 032665 22 ATKAARKSAPTTGGVKKP-HRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFK--TDLRFQSHAVLALQEAAE 98 (136)
Q Consensus 22 ~~k~~~~~~p~~~~~~k~-~r~~~g~~~l~EIr~~q~st~llipk~pF~Rlvrei~~~~~--~~~r~~~~Al~aLqea~E 98 (136)
+++++++++|..|+++++ +||+||+ |+|||+||+||+|||||+||+|||+||.+++. .++|||++|+++||||+|
T Consensus 38 ~~~aa~ksap~~g~~~~~~~r~rpg~--LrEIR~yQkSteLLIpKlPF~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaE 115 (156)
T 3r45_A 38 PTPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAE 115 (156)
T ss_dssp ---------------------------------------CCCSCHHHHHHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCch--HHHHHHhccccccccccccHHHHHHHHHHHhccCccceecHHHHHHHHHHHH
Confidence 566788899988888766 7899998 99999999999999999999999999999997 589999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCccccChhhHHHHHHHhccc
Q 032665 99 AYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 135 (136)
Q Consensus 99 ~~lv~lfe~a~~~a~HakRvTi~~kDiqla~rir~~~ 135 (136)
+|||+||||+|+||+||||||||++|||||++|||+.
T Consensus 116 ayLV~LFEdanLcAiHAkRVTIm~kDIqLArrIrg~~ 152 (156)
T 3r45_A 116 AFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGLE 152 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTCSEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCcccccHHHHHHHHHHcccc
Confidence 9999999999999999999999999999999999974
No 5
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=100.00 E-value=1.1e-37 Score=211.23 Aligned_cols=77 Identities=92% Similarity=1.273 Sum_probs=73.9
Q ss_pred hhhhhhchhHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHHHhcccC
Q 032665 60 ELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136 (136)
Q Consensus 60 ~llipk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~kDiqla~rir~~~~ 136 (136)
++||||+||+||||||++++.+++|||++|+++|||++|+||++||||+|+||+||||||||++|||||++|||+++
T Consensus 1 ~lli~k~PF~RLVRei~~~~~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~rirg~~~ 77 (77)
T 2hue_B 1 MALIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 77 (77)
T ss_dssp -CCSCHHHHHHHHHHHHHTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTCC-
T ss_pred CCccccchHHHHHHHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHHHhCcCC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999863
No 6
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.2e-37 Score=211.03 Aligned_cols=75 Identities=65% Similarity=0.984 Sum_probs=71.5
Q ss_pred hhhhhchhHHHHHHHHhhhh--ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHHHhccc
Q 032665 61 LLIRKLPFQRLVREIAQDFK--TDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 135 (136)
Q Consensus 61 llipk~pF~Rlvrei~~~~~--~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~kDiqla~rir~~~ 135 (136)
|||||+||+||||||.+++. .++|||++|+++|||++|+|||+||||+|+||+||||||||++|||||++|||++
T Consensus 2 lLI~klPF~RLVREI~~~~~~~~~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~rirg~~ 78 (82)
T 3nqj_A 2 LLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGLE 78 (82)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC--
T ss_pred CCcccccHHHHHHHHHHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHHHcccc
Confidence 78999999999999999997 5899999999999999999999999999999999999999999999999999985
No 7
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-33 Score=224.12 Aligned_cols=76 Identities=68% Similarity=1.042 Sum_probs=72.2
Q ss_pred hhhhhhchhHHHHHHHHhhhhc---cccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHHHhccc
Q 032665 60 ELLIRKLPFQRLVREIAQDFKT---DLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 135 (136)
Q Consensus 60 ~llipk~pF~Rlvrei~~~~~~---~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~kDiqla~rir~~~ 135 (136)
.+||||+||+||||||++++.+ ++|||++|+.|||||+|+|||+||||+|+||+||||||||++|||||++|||++
T Consensus 9 ~~lI~KlPFqRLVREIaq~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEd~nLcaiHAkRVTim~kDiqLarrirg~~ 87 (235)
T 2l5a_A 9 KLLISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLARRIRGQF 87 (235)
T ss_dssp --CCSCCHHHHHHHHHHHTSCGGGTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGTTHHHHHHTSSCSC
T ss_pred cccccCccHHHHHHHHHHHhccCCccceecHHHHHHHHHHHHHHHHHHHhhhHHHHhcccccccchhhHHHHHHHhhcc
Confidence 5999999999999999999975 899999999999999999999999999999999999999999999999999985
No 8
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=99.93 E-value=9.9e-27 Score=169.13 Aligned_cols=73 Identities=58% Similarity=0.883 Sum_probs=69.2
Q ss_pred hhhhchhHHHHHHHHhhhhc---cccccHHHHHHHHHHHHHHHHHHHHHHHHHHhh------------------------
Q 032665 62 LIRKLPFQRLVREIAQDFKT---DLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIH------------------------ 114 (136)
Q Consensus 62 lipk~pF~Rlvrei~~~~~~---~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~H------------------------ 114 (136)
||||+||+||||||++++.+ ++|||++|+.+||||+|+|||+||||+|+||+|
T Consensus 1 LI~klPF~RLVREI~~~~~~~~~~lRfq~~Al~ALQeAsEayLV~lFEd~nlcaiHA~~gGvkRIS~~iy~e~r~vl~~~ 80 (121)
T 2ly8_A 1 LISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHLVPRGSKRISGLIYEEVRAVLKSF 80 (121)
T ss_dssp CCSCCHHHHHHHHHHHHHTTCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCSSCCSSCHHHHHHHHHHHH
T ss_pred CCCccchHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhHHHHcCCccCccchhHHHHHHHHHHHHHH
Confidence 69999999999999999976 899999999999999999999999999999886
Q ss_pred --------------cCccccChhhHHHHHHHhcc
Q 032665 115 --------------AKRVTIMPKDIQLARRIRGE 134 (136)
Q Consensus 115 --------------akRvTi~~kDiqla~rir~~ 134 (136)
++|+||+..||.+|.+..|.
T Consensus 81 l~~i~rdav~yaehA~RKTVta~DV~~Alkr~G~ 114 (121)
T 2ly8_A 81 LESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGR 114 (121)
T ss_dssp HHHHHHHHHHHHHHTTCCCBCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhCCC
Confidence 58999999999999998885
No 9
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=99.84 E-value=2.5e-21 Score=126.87 Aligned_cols=64 Identities=28% Similarity=0.362 Sum_probs=61.7
Q ss_pred hhhchhHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHHH
Q 032665 63 IRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 131 (136)
Q Consensus 63 ipk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~kDiqla~ri 131 (136)
||++||.|+++++ ++.+||.+|+++||+++|.|++.||++|+.||.|+||+||+++||++|++.
T Consensus 3 lP~a~v~Ri~k~~-----~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~ 66 (68)
T 1b67_A 3 LPIAPIGRIIKNA-----GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKM 66 (68)
T ss_dssp SCHHHHHHHHHHT-----TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGGG
T ss_pred CCccHHHHHHhcC-----CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 7999999999999 789999999999999999999999999999999999999999999999764
No 10
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=99.76 E-value=6.9e-19 Score=116.08 Aligned_cols=64 Identities=30% Similarity=0.357 Sum_probs=61.5
Q ss_pred hhhhchhHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHH
Q 032665 62 LIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
Q Consensus 62 lipk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~kDiqla~r 130 (136)
.||++||.||+|+. +..|||++|+++|||++|.|+.++++||+.+|.|+||+||+++||+||.+
T Consensus 6 ~lp~a~v~Rl~r~~-----g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~ 69 (70)
T 1ku5_A 6 ELPIAPVDRLIRKA-----GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK 69 (70)
T ss_dssp CSCHHHHHHHHHHT-----TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHT
T ss_pred cCChHHHHHHHHHc-----CcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 48999999999997 78999999999999999999999999999999999999999999999974
No 11
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.65 E-value=1.7e-16 Score=109.71 Aligned_cols=74 Identities=16% Similarity=0.220 Sum_probs=65.0
Q ss_pred hhhhhhhhhchhHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHHHhc
Q 032665 57 KSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133 (136)
Q Consensus 57 ~st~llipk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~kDiqla~rir~ 133 (136)
+++++.||+++|.|++++++. ++.+||.+|..+||+++|.|+..|+++|+.+|.|++|+||+++||..|++-.|
T Consensus 3 ~~~d~~LP~a~i~ri~K~~~~---~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~~l~ 76 (93)
T 1n1j_A 3 REQDIYLPIANVARIMKNAIP---QTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLG 76 (93)
T ss_dssp ----CCCCHHHHHHHHHHTSC---TTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHTT
T ss_pred CcccccCChhHHHHHHHHhCC---ccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcC
Confidence 356789999999999999943 46899999999999999999999999999999999999999999999987443
No 12
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=99.32 E-value=2.2e-12 Score=90.86 Aligned_cols=69 Identities=23% Similarity=0.258 Sum_probs=65.1
Q ss_pred hhhhhchhHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHHHhcc
Q 032665 61 LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 134 (136)
Q Consensus 61 llipk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~kDiqla~rir~~ 134 (136)
.-||+.|..||.+.. +..|++.+|.++|++..|.|+.++.+||+.+|.|++|.||+.+||.+|.+-.|+
T Consensus 27 ~~ip~~~I~Rlar~~-----Gv~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~g~ 95 (102)
T 1id3_B 27 QGITKPAIRRLARRG-----GVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGR 95 (102)
T ss_dssp GGSCHHHHHHHHHHT-----TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHc-----CchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCC
Confidence 459999999999887 779999999999999999999999999999999999999999999999998775
No 13
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=99.32 E-value=2.1e-12 Score=90.87 Aligned_cols=72 Identities=22% Similarity=0.216 Sum_probs=65.7
Q ss_pred hhhhhhhhchhHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHHHhcc
Q 032665 58 STELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 134 (136)
Q Consensus 58 st~llipk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~kDiqla~rir~~ 134 (136)
+...-||+.+..||.+.. +..||+.+|.++|++..|.|+.++.++|..+|.|++|.||+++||++|.+-.|+
T Consensus 25 ~~~~gip~~~I~Rlar~~-----G~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~g~ 96 (103)
T 1tzy_D 25 DNIQGITKPAIRRLARRG-----GVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGR 96 (103)
T ss_dssp CGGGGSCHHHHHHHHHHT-----TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTC
T ss_pred hhcccCCHHHHHHHHHHc-----CccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHcCC
Confidence 333459999999999877 668999999999999999999999999999999999999999999999998775
No 14
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=99.32 E-value=2e-12 Score=91.11 Aligned_cols=72 Identities=22% Similarity=0.237 Sum_probs=63.1
Q ss_pred hhhhhhhhchhHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHHHhcc
Q 032665 58 STELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 134 (136)
Q Consensus 58 st~llipk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~kDiqla~rir~~ 134 (136)
+...-||+.+..||.+.. +..||+.+|.++|++..|.|+.++.++|..+|.|++|.||+++||++|.+-.|+
T Consensus 25 ~~~~gip~~~I~Rlar~~-----G~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~g~ 96 (103)
T 2yfw_B 25 DNIQGITKPAIRRLARRG-----GVKRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGR 96 (103)
T ss_dssp -----CCHHHHHHHHHHT-----TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC-
T ss_pred hhhccCCHHHHHHHHHHc-----CccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCC
Confidence 333449999999999877 668999999999999999999999999999999999999999999999998775
No 15
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=99.29 E-value=2e-12 Score=87.94 Aligned_cols=69 Identities=23% Similarity=0.233 Sum_probs=64.7
Q ss_pred hhhhhchhHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHHHhcc
Q 032665 61 LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 134 (136)
Q Consensus 61 llipk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~kDiqla~rir~~ 134 (136)
.-||+.+..||.+.. +..|++.+|.++|++..|.|+.++.+||..+|.|++|.||+..||.+|.+-.|+
T Consensus 9 ~~ip~~~I~Riar~~-----Gv~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~g~ 77 (84)
T 2hue_C 9 QGITKPAIRRLARRG-----GVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGR 77 (84)
T ss_dssp CSSCHHHHHHHHHHT-----TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTTCE
T ss_pred CCCCHHHHHHHHHHc-----CchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCC
Confidence 459999999999887 779999999999999999999999999999999999999999999999987765
No 16
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=99.28 E-value=6.9e-12 Score=90.98 Aligned_cols=65 Identities=25% Similarity=0.359 Sum_probs=58.5
Q ss_pred hhchhHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHH----HHHHHhhcCccccChhhHHHHHHHh
Q 032665 64 RKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFED----TNLCAIHAKRVTIMPKDIQLARRIR 132 (136)
Q Consensus 64 pk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~----a~~~a~HakRvTi~~kDiqla~rir 132 (136)
++..|..||+.|+.+++++.+|+++|+..| ++|++++||. |..++.|++|.||+.+|||.|++|.
T Consensus 31 ~~esy~~YIyKVLKQVhpd~gISskAm~Im----nSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLl 99 (123)
T 2nqb_D 31 RKESYAIYIYTVLKQVHPDTGISSKAMSIM----NSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLL 99 (123)
T ss_dssp CCCCSHHHHHHHHHHHCTTCEECHHHHHHH----HHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHhCCCCCcCHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHh
Confidence 567899999999999999999999999999 6777776665 4889999999999999999999985
No 17
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=99.27 E-value=7.2e-12 Score=91.23 Aligned_cols=65 Identities=26% Similarity=0.357 Sum_probs=58.9
Q ss_pred hhchhHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHH----HHHHHhhcCccccChhhHHHHHHHh
Q 032665 64 RKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFED----TNLCAIHAKRVTIMPKDIQLARRIR 132 (136)
Q Consensus 64 pk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~----a~~~a~HakRvTi~~kDiqla~rir 132 (136)
++..|..||+.|+.++++|.+||++|+..| ++|++++||. |..++.|++|.||+.+|||.|++|.
T Consensus 34 ~~esy~~YIyKVLKQVhpd~gISskAm~Im----nSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLl 102 (126)
T 1tzy_B 34 RKESYSIYVYKVLKQVHPDTGISSKAMGIM----NSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLL 102 (126)
T ss_dssp CCCCCHHHHHHHHHHHCTTCEECHHHHHHH----HHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHhCCCCCcCHHHHHHH----HHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 668899999999999999999999999999 7777777766 4889999999999999999999985
No 18
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.23 E-value=1e-11 Score=93.33 Aligned_cols=69 Identities=19% Similarity=0.064 Sum_probs=65.2
Q ss_pred hhhhhhhhchhHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHHH
Q 032665 58 STELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 131 (136)
Q Consensus 58 st~llipk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~kDiqla~ri 131 (136)
.-++.||++|..||+|+. +..|+|.+|.++|+++.|.|+..+.++|+.+|.|++|+||+++||++|.+.
T Consensus 78 ~~~l~lP~a~V~Ri~k~~-----g~~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~ 146 (154)
T 1f1e_A 78 YDGELFGRATVRRILKRA-----GIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITY 146 (154)
T ss_dssp CCSCCCCHHHHHHHHHHT-----TCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred cccccCCccHHHHHHHHc-----CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 445789999999999998 789999999999999999999999999999999999999999999999875
No 19
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=99.22 E-value=3e-11 Score=86.21 Aligned_cols=70 Identities=20% Similarity=0.234 Sum_probs=61.6
Q ss_pred hhhhhhchhHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHHHhcc
Q 032665 60 ELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 134 (136)
Q Consensus 60 ~llipk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~kDiqla~rir~~ 134 (136)
++-||+....||+++. +..+++.++.++|+++++.|+.++..|++..|.||+|.||+.+||.++.+--|.
T Consensus 5 d~~lP~a~I~Ri~r~~-----g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g~ 74 (111)
T 3b0c_T 5 EPEIASSLIKQIFSHY-----VKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQGL 74 (111)
T ss_dssp -----CHHHHHHHHHH-----HCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHHHC-----CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCCC
Confidence 4679999999998888 789999999999999999999999999999999999999999999999987664
No 20
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=99.18 E-value=3.7e-11 Score=80.16 Aligned_cols=66 Identities=17% Similarity=0.271 Sum_probs=61.7
Q ss_pred hhhhchhHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHHH
Q 032665 62 LIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 131 (136)
Q Consensus 62 lipk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~kDiqla~ri 131 (136)
.+|++++.|+++++. ++.+++.+|.++|++++|.|+..|-..|+..|.|.+|.||+++||+.|.+.
T Consensus 4 ~LP~A~V~rI~K~~~----p~~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~~ 69 (76)
T 3b0c_W 4 TVPRGTLRKIIKKHK----PHLRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAKV 69 (76)
T ss_dssp CCCHHHHHHHHHHHC----TTCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHH
T ss_pred cccccHHHHHHHHhC----CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 589999999998874 478999999999999999999999999999999999999999999999875
No 21
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=99.13 E-value=1e-10 Score=77.46 Aligned_cols=65 Identities=20% Similarity=0.236 Sum_probs=60.7
Q ss_pred hhhhchhHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHHH
Q 032665 62 LIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 131 (136)
Q Consensus 62 lipk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~kDiqla~ri 131 (136)
.+|..|+.++...+ |-.+++.+|..+|-+..|.++-++.++|..+|.|+||.||+.+||.+|.++
T Consensus 6 ~lp~~~v~~iaes~-----Gi~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk~ 70 (70)
T 1taf_B 6 SISAESMKVIAESI-----GVGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLKV 70 (70)
T ss_dssp CCCHHHHHHHHHHT-----TCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHC-----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHcC
Confidence 47999999998888 788999999999999999999999999999999999999999999999753
No 22
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.09 E-value=1.2e-10 Score=87.49 Aligned_cols=68 Identities=10% Similarity=0.081 Sum_probs=63.4
Q ss_pred hhhchhHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHHHhcc
Q 032665 63 IRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 134 (136)
Q Consensus 63 ipk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~kDiqla~rir~~ 134 (136)
||++|+.|++|+.+ ++.|+|.+|-++|++++|.|+..+-.+|+.+|.|++|+||+++||..+..-+|-
T Consensus 5 LP~a~V~Riik~~l----g~~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~~~lg~ 72 (154)
T 1f1e_A 5 LPKAAIERIFRQGI----GERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADVLMV 72 (154)
T ss_dssp CCHHHHHHHHHTTS----TTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHHTC
T ss_pred CCccHHHHHHHhcC----CccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhccc
Confidence 79999999999885 569999999999999999999999999999999999999999999999876653
No 23
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=99.05 E-value=5.2e-10 Score=73.59 Aligned_cols=63 Identities=22% Similarity=0.376 Sum_probs=55.2
Q ss_pred HHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHHHhc
Q 032665 70 RLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133 (136)
Q Consensus 70 Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~kDiqla~rir~ 133 (136)
++|..|+.+. |..++++++...|-|.+|.|..+++++|..+|.||+|.||..+||+||...+-
T Consensus 5 ~~i~~iLk~~-G~~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~~~ 67 (68)
T 1taf_A 5 QVIMSILKEL-NVQEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEVTL 67 (68)
T ss_dssp HHHHHHHHHT-TCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHTC
T ss_pred HHHHHHHHHC-CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhcc
Confidence 4455555543 66799999999999999999999999999999999999999999999998763
No 24
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=98.92 E-value=2.5e-09 Score=73.81 Aligned_cols=66 Identities=26% Similarity=0.192 Sum_probs=56.1
Q ss_pred hchhHHHHHHHHhhhh--ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHH
Q 032665 65 KLPFQRLVREIAQDFK--TDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
Q Consensus 65 k~pF~Rlvrei~~~~~--~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~kDiqla~r 130 (136)
|+.+.--|-+|+++.. .+..++++++.+|-|.++.|+.++.+|+...|.||||.||+++||.|+.|
T Consensus 11 Kaal~~~V~ki~~e~~~~~g~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~R 78 (90)
T 3v9r_A 11 KARLWIRVEERLQQVLSSEDIKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLR 78 (90)
T ss_dssp HHHHHHHHHHHHHHHSCSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhcCceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 4455555666666552 24789999999999999999999999999999999999999999999965
No 25
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=98.89 E-value=3.6e-09 Score=75.79 Aligned_cols=62 Identities=29% Similarity=0.397 Sum_probs=52.7
Q ss_pred hHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHHH
Q 032665 68 FQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 131 (136)
Q Consensus 68 F~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~kDiqla~ri 131 (136)
..|++++...+ .+..++++++.+|-|.++.|+.++..|+...|.||||.||+++||.|+.|-
T Consensus 33 V~rIvke~gae--r~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~Rr 94 (113)
T 4dra_A 33 VGCLCEEVALD--KEMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARR 94 (113)
T ss_dssp HHHHHHHHHHH--HTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred HHHHHHHHHHH--cCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHh
Confidence 44555555332 246699999999999999999999999999999999999999999999753
No 26
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=98.89 E-value=4.6e-09 Score=76.51 Aligned_cols=72 Identities=19% Similarity=0.181 Sum_probs=62.0
Q ss_pred hhhhhhhchhHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHHHhc
Q 032665 59 TELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133 (136)
Q Consensus 59 t~llipk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~kDiqla~rir~ 133 (136)
.++.+|.++..|+++++.. ...+++.+|..+|++++|.|+..|-..|+..|.|.+|.||+.+||..|+.-.|
T Consensus 6 ~d~~LP~A~I~rImK~~~p---d~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l~ 77 (128)
T 2byk_B 6 EDLNLPNAVIGRLIKEALP---ESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTELD 77 (128)
T ss_dssp -----CCSHHHHHHHHHSC---TTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHTT
T ss_pred ccccCCHHHHHHHHHHhCc---ccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcC
Confidence 3578999999999998843 46899999999999999999999999999999999999999999999987654
No 27
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=98.87 E-value=4.2e-09 Score=80.82 Aligned_cols=73 Identities=15% Similarity=0.267 Sum_probs=65.8
Q ss_pred hhhhhhhhhchhHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHHHhc
Q 032665 57 KSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133 (136)
Q Consensus 57 ~st~llipk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~kDiqla~rir~ 133 (136)
...++.+|+++..|++++++- +.+|+.+|.++|+++++.|+..|-..|+..+.|.+|.||+.+||-.|..-.|
T Consensus 10 ~~eD~~LP~A~V~RImK~alp----~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~~Lg 82 (179)
T 1jfi_B 10 NDDDLTIPRAAINKMIKETLP----NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLG 82 (179)
T ss_dssp --CCCCCCHHHHHHHHHHHST----TCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHT
T ss_pred chhhhhcCHHHHHHHHHHhCC----ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcC
Confidence 445688999999999999952 6899999999999999999999999999999999999999999999987544
No 28
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=98.86 E-value=4.2e-09 Score=74.82 Aligned_cols=67 Identities=25% Similarity=0.300 Sum_probs=54.8
Q ss_pred hchhHHHHHHHHhhhh--ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHHH
Q 032665 65 KLPFQRLVREIAQDFK--TDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 131 (136)
Q Consensus 65 k~pF~Rlvrei~~~~~--~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~kDiqla~ri 131 (136)
|..+.--|-.|+++.. .+.+++++++.+|-|.++.|+.++..|+...|.||||.||+.+||.|+.|-
T Consensus 18 Kaal~~~V~rI~~~~g~~~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rr 86 (107)
T 3b0b_B 18 RAAVHYTTGCLCQDVAEDKGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLARR 86 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHh
Confidence 3444444444444442 357999999999999999999999999999999999999999999999763
No 29
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=98.79 E-value=1.1e-08 Score=75.72 Aligned_cols=67 Identities=27% Similarity=0.326 Sum_probs=56.4
Q ss_pred hchhHHHHHHHHhhhh--ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHHH
Q 032665 65 KLPFQRLVREIAQDFK--TDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 131 (136)
Q Consensus 65 k~pF~Rlvrei~~~~~--~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~kDiqla~ri 131 (136)
|+...--|-.|+++.. .+..|+++++.+|-|.++.|+.++..|+...|.||||.||.++||.|+.|-
T Consensus 18 KaAl~y~VgkIvee~~~~~~~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rr 86 (140)
T 3vh5_A 18 RAAVHYTTGALAQDVAEDKGVLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLARR 86 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 4444455555555542 467899999999999999999999999999999999999999999999763
No 30
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=98.77 E-value=2.4e-08 Score=76.96 Aligned_cols=69 Identities=17% Similarity=0.235 Sum_probs=59.0
Q ss_pred hhchhHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHHHh
Q 032665 64 RKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 132 (136)
Q Consensus 64 pk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~kDiqla~rir 132 (136)
++..|..||+.|+.+++++.+|+.+|+..|-...++++..|...|..++.|.+|.||+++|||.|.++-
T Consensus 1 ~~~~~~~yi~kvLkqv~p~~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avrl~ 69 (192)
T 2jss_A 1 RKETYSSYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRLI 69 (192)
T ss_dssp CCSTTHHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHcccCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHh
Confidence 357899999999999999999999999999555555555555566889999999999999999999873
No 31
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=98.67 E-value=2e-08 Score=69.72 Aligned_cols=79 Identities=18% Similarity=0.156 Sum_probs=54.2
Q ss_pred hHHHhhh--hhhhhhhhhhchhHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHH
Q 032665 49 LREIRKY--QKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126 (136)
Q Consensus 49 l~EIr~~--q~st~llipk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~kDiq 126 (136)
+.||+.. ....++.+|.+.. +.|++.-....+++.+|..+|..++|.|+..|.+.|+.+|.+.+|.||+++||+
T Consensus 4 ~~~~~~~~~~~~~~~~lP~arI----krImK~~~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~ 79 (97)
T 1n1j_B 4 MEEIRNLTVKDFRVQELPLARI----KKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIA 79 (97)
T ss_dssp ----------------CCHHHH----HHHHTTSTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHH
T ss_pred HHHHHhcccCCcCCCcCCHHHH----HHHHccCccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHH
Confidence 4566654 2223344454444 444444333469999999999999999999999999999999999999999999
Q ss_pred HHHHH
Q 032665 127 LARRI 131 (136)
Q Consensus 127 la~ri 131 (136)
+|.+-
T Consensus 80 ~Av~~ 84 (97)
T 1n1j_B 80 MAITK 84 (97)
T ss_dssp HHHTT
T ss_pred HHHhc
Confidence 99753
No 32
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=98.55 E-value=1.4e-07 Score=67.77 Aligned_cols=69 Identities=19% Similarity=0.263 Sum_probs=61.2
Q ss_pred hhhhhchhHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHH
Q 032665 61 LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
Q Consensus 61 llipk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~kDiqla~r 130 (136)
+-.+.+|.+| |+.|++.-....+++.+|..+|..++|.|+..|.+.|+.+|...+|.||+++||..|+.
T Consensus 37 ~k~~~lPvaR-IkrImK~d~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di~~Av~ 105 (119)
T 4g92_C 37 YKIHQLPLAR-IKKVMKADPEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDIAAALS 105 (119)
T ss_dssp SSCCSSCHHH-HHHHHHTSTTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHT
T ss_pred cccCCCCHHH-HHHHHhhCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCHHHHHHHHh
Confidence 3356688888 67887765566799999999999999999999999999999999999999999999975
No 33
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=98.51 E-value=1.3e-08 Score=84.85 Aligned_cols=50 Identities=42% Similarity=0.524 Sum_probs=12.5
Q ss_pred cccccccccCCCCCCCcchhhhhcccCCCCCCCCCCCcccCCCchhhHHH
Q 032665 3 RTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREI 52 (136)
Q Consensus 3 rtk~~a~ks~g~kap~k~~~~k~~~~~~p~~~~~~k~~r~~~g~~~l~EI 52 (136)
||||+|++++||++|++++++++++++.|.++++++++|++||++++.|-
T Consensus 3 ~tk~tarkstggkaprk~~~~k~~rk~~~~~~~~kkp~R~rPGt~a~~e~ 52 (361)
T 2r10_A 3 DPFTTARKSTGGKAPRKGGMVVKKRKLATEAGGSDERPKYLPGKHPKNQE 52 (361)
T ss_dssp ------------------------------------CCSSCCSCCBCCCS
T ss_pred cccccccCCCCCCCCCccccccccCCCCCCCCCCCCCcccCCCccccccc
Confidence 79999999999999999999999988888888889999999999997765
No 34
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=98.41 E-value=7e-07 Score=70.91 Aligned_cols=54 Identities=20% Similarity=0.262 Sum_probs=51.8
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHHHhcc
Q 032665 81 TDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 134 (136)
Q Consensus 81 ~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~kDiqla~rir~~ 134 (136)
+..|+|.++.+.+.++.|.|+.++..||+.+|-||+|+||++.||.+|.+..|.
T Consensus 175 GVkRIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALKr~gr 228 (235)
T 2l5a_A 175 GVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGR 228 (235)
T ss_dssp TCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhcCC
Confidence 778999999999999999999999999999999999999999999999998764
No 35
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=98.41 E-value=4.9e-07 Score=65.15 Aligned_cols=67 Identities=16% Similarity=0.156 Sum_probs=61.5
Q ss_pred hhhhhhchhHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHH
Q 032665 60 ELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
Q Consensus 60 ~llipk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~kDiqla~r 130 (136)
.|.+|-.+|.|++++- ....|++.+|-..|-.+.|.+..+++|.|...|.|+++.+|+++||++|.+
T Consensus 20 gLqfPV~ri~R~Lk~~----~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~lAI~ 86 (120)
T 2f8n_G 20 GVIFPVGRMLRYIKKG----HPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVA 86 (120)
T ss_dssp TCSSCHHHHHHHHHHH----SSSCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred CccCChHHHHHHHHcC----ccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHh
Confidence 5789999999999886 125699999999999999999999999999999999999999999999986
No 36
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=98.37 E-value=5.5e-07 Score=65.18 Aligned_cols=67 Identities=25% Similarity=0.251 Sum_probs=61.2
Q ss_pred hhhhhhchhHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHH
Q 032665 60 ELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
Q Consensus 60 ~llipk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~kDiqla~r 130 (136)
+|.+|-.+|.|++++- ....|++.+|...|-.+.|.+..+++|.|...|.|+++.+|+++||++|.+
T Consensus 21 gL~fPV~ri~R~Lk~~----~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~ 87 (123)
T 2nqb_C 21 GLQFPVGRIHRLLRKG----NYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 87 (123)
T ss_dssp TCSSCHHHHHHHHHHT----TSCSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred CeeccHHHHHHHHHcc----ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHh
Confidence 5778999999998765 245699999999999999999999999999999999999999999999986
No 37
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=98.35 E-value=6.8e-07 Score=65.18 Aligned_cols=67 Identities=25% Similarity=0.248 Sum_probs=61.3
Q ss_pred hhhhhhchhHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHH
Q 032665 60 ELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
Q Consensus 60 ~llipk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~kDiqla~r 130 (136)
+|.+|-.+|.|++++- ....|++.+|...|-.+.|.+..+++|.|...|.|+++.+|+++||++|.+
T Consensus 23 gLqfPV~rI~R~Lk~~----~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~ 89 (129)
T 1tzy_A 23 GLQFPVGRVHRLLRKG----NYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIR 89 (129)
T ss_dssp TCSSCHHHHHHHHHHT----TSSSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred ceeccHHHHHHHHHcc----ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHh
Confidence 5789999999998774 245699999999999999999999999999999999999999999999986
No 38
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=98.29 E-value=8.5e-07 Score=66.18 Aligned_cols=68 Identities=25% Similarity=0.252 Sum_probs=61.6
Q ss_pred hhhhhhhchhHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHH
Q 032665 59 TELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
Q Consensus 59 t~llipk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~kDiqla~r 130 (136)
..|.+|-.+|.|++++- ....|++.+|...|-.+.|.+..+++|.|...|.|+++.+|+++||++|.+
T Consensus 41 agLqFPVgrI~R~LK~~----~~a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrItprhI~lAI~ 108 (149)
T 2f8n_K 41 AGLQFPVGRVHRLLRKG----NYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIR 108 (149)
T ss_dssp HTCSSCHHHHHHHHHHT----TSCSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred CCeeccHHHHHHHHHcc----ccccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHh
Confidence 35788999999998764 245699999999999999999999999999999999999999999999987
No 39
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=98.27 E-value=3.1e-06 Score=56.59 Aligned_cols=66 Identities=24% Similarity=0.336 Sum_probs=59.5
Q ss_pred hhhhhchhHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHH
Q 032665 61 LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
Q Consensus 61 llipk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~kDiqla~r 130 (136)
-+++|.-.+.||++| .+...+.+++-+.|.+.|+.|+.+..+.|..+|.|.+--||.++|+||...
T Consensus 4 ~vl~k~~L~~Lv~~i----dp~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Le 69 (76)
T 1h3o_B 4 MVLTKKKLQDLVREV----DPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLE 69 (76)
T ss_dssp CSSCHHHHHHHHHHH----CSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHH
T ss_pred ccccHHHHHHHHHhc----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Confidence 346777777888777 567899999999999999999999999999999999999999999999874
No 40
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=98.26 E-value=1e-06 Score=61.17 Aligned_cols=64 Identities=14% Similarity=0.188 Sum_probs=50.4
Q ss_pred chhHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHH
Q 032665 66 LPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
Q Consensus 66 ~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~kDiqla~r 130 (136)
.|..|+ +.|++.-....+++.+|...|-.++|-|+..|.+.|+.+|.+.+|.||+++||+++++
T Consensus 12 fPvaRI-krimK~~~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~ 75 (98)
T 1jfi_A 12 FPPARI-KKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIE 75 (98)
T ss_dssp CCHHHH-HHHHTTSTTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC
T ss_pred CChHHH-HHHHHcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHh
Confidence 344443 4455543344699999999999999999999999999999999999999999998864
No 41
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=98.26 E-value=1.1e-06 Score=64.01 Aligned_cols=68 Identities=19% Similarity=0.148 Sum_probs=60.9
Q ss_pred hhhhhhchhHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHH
Q 032665 60 ELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
Q Consensus 60 ~llipk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~kDiqla~r 130 (136)
.|.+|-.+|.|++++-. ....|++++|...|-.+.|.+..+++|.|...|.|.++.+|+++||+||.+
T Consensus 25 gLqfPV~ri~R~Lk~~~---~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItprhi~lAI~ 92 (128)
T 1f66_C 25 GLQFPVGRIHRHLKSRT---TSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 92 (128)
T ss_dssp TCSSCHHHHHHHHHHTS---CSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHH
T ss_pred CccCChHHHHHHHHHcc---cchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHh
Confidence 57899999999987761 013599999999999999999999999999999999999999999999986
No 42
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=98.24 E-value=8.3e-07 Score=64.86 Aligned_cols=67 Identities=27% Similarity=0.263 Sum_probs=60.6
Q ss_pred hhhhhhchhHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHH
Q 032665 60 ELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
Q Consensus 60 ~llipk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~kDiqla~r 130 (136)
.|.+|-.+|.|++++- ....|++.+|...|-.+.|.+..+++|.|...|.|+++.+|+++||++|.+
T Consensus 23 gLqfPV~rI~R~Lk~~----~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI~ 89 (131)
T 1id3_C 23 GLTFPVGRVHRLLRRG----NYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIR 89 (131)
T ss_dssp TCSSCHHHHHHHHHTT----CSCSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred CeecCHHHHHHHHHcc----ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHh
Confidence 4778999999987664 245699999999999999999999999999999999999999999999986
No 43
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=98.06 E-value=5.2e-06 Score=63.87 Aligned_cols=68 Identities=25% Similarity=0.224 Sum_probs=60.8
Q ss_pred hhhhhhchhHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHH
Q 032665 60 ELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
Q Consensus 60 ~llipk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~kDiqla~r 130 (136)
+|.+|-.++.|++++-. ....|++.+|...|-...|.+..+++|.|...|.|+++.||+|+||++|.+
T Consensus 103 gl~fPv~ri~R~lk~~~---~a~~Rv~~~A~vyLaavLEyl~~eIlelA~n~a~~~~~~~I~p~~i~lAi~ 170 (192)
T 2jss_A 103 GLQFPVGRIKRYLKRHA---TGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIR 170 (192)
T ss_dssp SCCSCHHHHHHHHHHTT---CSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHhcC---ccccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHh
Confidence 68899999999987751 123699999999999999999999999999999999999999999999986
No 44
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=97.89 E-value=2e-05 Score=58.09 Aligned_cols=65 Identities=11% Similarity=0.107 Sum_probs=50.2
Q ss_pred hchhHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHH-hhcCccccChhhHHHHHH
Q 032665 65 KLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCA-IHAKRVTIMPKDIQLARR 130 (136)
Q Consensus 65 k~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a-~HakRvTi~~kDiqla~r 130 (136)
.+|..|+ +.|++.-.....++.+|..++..|+|-|+..|.+.|+.+| ...+|.||+.+||..|+.
T Consensus 19 ~LPlaRI-KrIMK~dpdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~ 84 (140)
T 2byk_A 19 FLPLSRV-RTIMKSSMDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVN 84 (140)
T ss_dssp -----------CCSSSSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHH
T ss_pred CCCHHHH-HHHHhcCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHh
Confidence 4455554 6666654445689999999999999999999999999999 999999999999999986
No 45
>2x4w_B Histone H3.2; transcription, metal-binding, zinc-finger, chromatin regulator, transcription regulation; HET: M3L; 1.50A {Homo sapiens} PDB: 2x4x_B* 2x4y_B*
Probab=97.18 E-value=0.00014 Score=38.37 Aligned_cols=24 Identities=71% Similarity=1.030 Sum_probs=18.5
Q ss_pred hcccCCCCCCCCCCCcccCCCchh
Q 032665 25 AARKSAPTTGGVKKPHRYRPGTVA 48 (136)
Q Consensus 25 ~~~~~~p~~~~~~k~~r~~~g~~~ 48 (136)
+++++.|..+++++++||+||++|
T Consensus 3 ~ark~~p~~~~~kk~~RyRPGtvA 26 (26)
T 2x4w_B 3 AARKSAPATGGVXKPHRYRXXXXX 26 (26)
T ss_pred ccccCCCCCCccccccccccccCC
Confidence 344566667778889999999975
No 46
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=92.67 E-value=0.022 Score=42.69 Aligned_cols=21 Identities=95% Similarity=1.164 Sum_probs=12.6
Q ss_pred CcccccccccCCCCCCCcchh
Q 032665 2 ARTKQTARKSTGGKAPRKQLA 22 (136)
Q Consensus 2 artk~~a~ks~g~kap~k~~~ 22 (136)
|||+|+|||++|+|++.+++.
T Consensus 1 ~~~~~~~r~s~~~K~~~~~~r 21 (159)
T 3a1b_A 1 ARTKQTARKSTGGKAPRKQLR 21 (159)
T ss_dssp CEEEECCCC-------CHHHH
T ss_pred CccccccccccCCCcchHHHH
Confidence 799999999999999999883
No 47
>3avr_B Histone H3; cupin superfamily, TRI/dimethyllysine demethylase, oxidoredu structural protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens}
Probab=92.41 E-value=0.06 Score=28.00 Aligned_cols=25 Identities=80% Similarity=1.018 Sum_probs=18.5
Q ss_pred CcchhhhhcccCCCCCCCCCCCccc
Q 032665 18 RKQLATKAARKSAPTTGGVKKPHRY 42 (136)
Q Consensus 18 ~k~~~~k~~~~~~p~~~~~~k~~r~ 42 (136)
+++++++++++++|..++++++||.
T Consensus 1 rK~la~Kaarks~p~~~g~kk~hR~ 25 (26)
T 3avr_B 1 RKQLATKAARXSAPATGGVKKPXXX 25 (26)
T ss_pred CcccccccccCCCCCCccccccCCC
Confidence 3667778777877877887777763
No 48
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=92.21 E-value=0.73 Score=30.88 Aligned_cols=65 Identities=15% Similarity=0.125 Sum_probs=49.3
Q ss_pred hhhhhchhHHHHHHHHhhhh-ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHH
Q 032665 61 LLIRKLPFQRLVREIAQDFK-TDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLA 128 (136)
Q Consensus 61 llipk~pF~Rlvrei~~~~~-~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~kDiqla 128 (136)
..||+.-..||++. .|. ..++++.+|+.++.+..+-|+..-...|..-|.--+-.+|.++|++=+
T Consensus 11 ~~i~~~li~ril~~---~F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~e~LEki 76 (84)
T 4dra_E 11 SGFRKELVSRLLHL---HFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAEDALRVDVDQLEKV 76 (84)
T ss_dssp CCCCHHHHHHHHHT---TCSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHH
T ss_pred CCCCHHHHHHHHHH---HhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHH
Confidence 34665555555542 133 679999999999999999999999999887776666778999998744
No 49
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=90.74 E-value=1.3 Score=29.40 Aligned_cols=65 Identities=15% Similarity=0.122 Sum_probs=48.4
Q ss_pred hhhhchhHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHH
Q 032665 62 LIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLA 128 (136)
Q Consensus 62 lipk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~kDiqla 128 (136)
.||..-..+|+++... ....|++++|+.++.+..+-|++.-+..|..-|.--+-..|.++|++-+
T Consensus 8 ~~~~~lI~ril~~~f~--~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~~~LEki 72 (81)
T 3b0b_C 8 GFRKETVERLLRLHFR--DGRTRVNGDALLLMAELLKVFVREAAARAARQAQAEDLEKVDIEHVEKV 72 (81)
T ss_dssp CCCHHHHHHHHHHHCC--STTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHH
T ss_pred CCCHHHHHHHHHHHhc--cCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecHHHHHHH
Confidence 3555445555554311 2578999999999999999999999999888776566678888888743
No 50
>1r4v_A Hypothetical protein AQ_328; structural genomics, all-alpha, histon fold, PSI, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.90A {Aquifex aeolicus} SCOP: a.22.1.4
Probab=85.26 E-value=1.2 Score=33.47 Aligned_cols=71 Identities=17% Similarity=0.162 Sum_probs=58.6
Q ss_pred hhhhhhh--hhhhchhHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHH
Q 032665 55 YQKSTEL--LIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
Q Consensus 55 ~q~st~l--lipk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~kDiqla~r 130 (136)
|.+-.+. +|+-.-|.++.|+. .++-+..+-+.-+-+..|.-+.+||+-|..-|...+|-.|.+.|+-+...
T Consensus 17 ~~~~~~Mm~vmg~~kferlFR~a-----agLDvdK~d~kr~~d~V~~Kl~DLl~va~~~Ak~NgRDvI~~~DLPITKG 89 (171)
T 1r4v_A 17 YSKIETMLRPKGFDKLDHYFRTE-----LDIDLTDETIELLLNSVKAAFGKLFYGAEQRARWNGRDFIALADLNITKA 89 (171)
T ss_dssp ----CCTTSCTTHHHHHHHHHHH-----HCCCCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTTCSEECGGGSCCCHH
T ss_pred HHHHHHHHhcCChHHHHHHHHHH-----hccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccCCccHH
Confidence 3333344 78889999999999 56788888899999999999999999999999999999999999754443
No 51
>1wwi_A Hypothetical protein TTHA1479; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 1.58A {Thermus thermophilus HB8} SCOP: a.22.1.4 PDB: 1wws_A
Probab=82.92 E-value=1.6 Score=32.10 Aligned_cols=64 Identities=20% Similarity=0.278 Sum_probs=53.4
Q ss_pred hhhhchhHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHH
Q 032665 62 LIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
Q Consensus 62 lipk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~kDiqla~r 130 (136)
+|+-.-|.++.|+. .++-+..+-+.-+-+..|.-+.+||+-|..-|...+|-.|.+.|+-+...
T Consensus 2 vm~~~~~e~lFR~a-----a~LdvdK~d~~r~~d~V~~Kl~DLl~va~~~Ak~n~RdvI~~~DLPITkG 65 (148)
T 1wwi_A 2 LMKVAEFERLFRQA-----AGLDVDKNDLKRVSDFLRNKLYDLLAVAERNAKYNGRDLIFEPDLPIAKG 65 (148)
T ss_dssp CSCHHHHHHHHHHH-----HCCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECGGGSCCCHH
T ss_pred cCCHHHHHHHHHHH-----hccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccCCccHH
Confidence 35566789999988 45667777788888999999999999999999999999999999754433
No 52
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=82.37 E-value=3 Score=38.73 Aligned_cols=66 Identities=12% Similarity=0.157 Sum_probs=54.5
Q ss_pred hhhhhhchhHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHH
Q 032665 60 ELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
Q Consensus 60 ~llipk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~kDiqla~r 130 (136)
+|.+|-.-..|+++.. -..|++..|-.-|--+.|-...+++|-|...|...++..|+++|+++|.+
T Consensus 102 ~l~~pv~~~~~~l~~~-----~~~r~~~~~~~y~~avleyl~~~~l~la~~~~~~~~~~~i~p~~~~~ai~ 167 (1049)
T 3ksy_A 102 PLSLPVEKIHPLLKEV-----LGYKIDHQVSVYIVAVLEYISADILKLVGNYVRNIRHYEITKQDIKVAMC 167 (1049)
T ss_dssp SCSSCHHHHHHHHHHH-----HCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCHHHHHHHHH
T ss_pred CccccHHHHHHHhhcc-----cccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHcCCceecCcccccccc
Confidence 4556665566666333 34699999998888888999999999999999999999999999999985
No 53
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=78.35 E-value=1.8 Score=30.78 Aligned_cols=29 Identities=10% Similarity=0.189 Sum_probs=27.1
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHH
Q 032665 81 TDLRFQSHAVLALQEAAEAYLVGLFEDTN 109 (136)
Q Consensus 81 ~~~r~~~~Al~aLqea~E~~lv~lfe~a~ 109 (136)
+..|+|.++.+.+.++.|.|+.++..||+
T Consensus 61 GvkRIS~~iy~e~r~vl~~~l~~i~rdav 89 (121)
T 2ly8_A 61 GSKRISGLIYEEVRAVLKSFLESVIRDSV 89 (121)
T ss_dssp CSSCCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66899999999999999999999999984
No 54
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=74.90 E-value=14 Score=28.68 Aligned_cols=51 Identities=18% Similarity=0.255 Sum_probs=44.5
Q ss_pred ccccccHHHHHHHHHHHH----HHHHHHHHHHHHHHhhcCccccChhhHHHHHHH
Q 032665 81 TDLRFQSHAVLALQEAAE----AYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 131 (136)
Q Consensus 81 ~~~r~~~~Al~aLqea~E----~~lv~lfe~a~~~a~HakRvTi~~kDiqla~ri 131 (136)
.+..++.++++.|.+.++ .++.++++.+...|.-.++.+|+.+|++-+...
T Consensus 275 ~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~ 329 (368)
T 3uk6_A 275 EDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSL 329 (368)
T ss_dssp TTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 456799999999998887 488899999999998889999999999988765
No 55
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=70.89 E-value=20 Score=30.75 Aligned_cols=50 Identities=18% Similarity=0.155 Sum_probs=42.5
Q ss_pred cccccHHHHHHHHHHH-------------HHHHHHHHHHHHHHHhhcCccccChhhHHHHHHH
Q 032665 82 DLRFQSHAVLALQEAA-------------EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 131 (136)
Q Consensus 82 ~~r~~~~Al~aLqea~-------------E~~lv~lfe~a~~~a~HakRvTi~~kDiqla~ri 131 (136)
...|+.+|+..|.+.+ ...|.++.+.|..+|...++..|+.+|++-|...
T Consensus 312 ~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 312 IPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp SCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 4689999999987754 5677889999998898889999999999998754
No 56
>3v9r_B MHF2, uncharacterized protein YDL160C-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=68.94 E-value=3.5 Score=27.81 Aligned_cols=66 Identities=9% Similarity=0.160 Sum_probs=39.7
Q ss_pred hhhchhHHHHHHHHhhh-hccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------cCccccChhhHHHHHHH
Q 032665 63 IRKLPFQRLVREIAQDF-KTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIH-------AKRVTIMPKDIQLARRI 131 (136)
Q Consensus 63 ipk~pF~Rlvrei~~~~-~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~H-------akRvTi~~kDiqla~ri 131 (136)
||+.-..||+. ..| ..++||+.+|+.++++..+-|+..-.-.|+.-.-- .+-..|..+|.+-+..+
T Consensus 2 ip~~llaRIL~---~~F~~~kTrIt~da~~lv~kY~diFVrEAv~Rs~e~ke~~~~~~~~~~d~~LeveDLEkiaGl 75 (88)
T 3v9r_B 2 LSKEALIKILS---QNEGGNDMKIADEVVPMIQKYLDIFIDEAVLRSLQSHKDINGERGDKSPLELSHQDLERIVGL 75 (88)
T ss_dssp CCSHHHHHHHT---TTSCSSCCEECTTTHHHHHHHHHHHHHHHHHHHHHHHHCC-----------CCHHHHHHHHHH
T ss_pred CCHHHHHHHHH---HHhCCCCceecHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCeeehHHHHHHHHH
Confidence 45555555554 223 47899999999999887777776655555221111 11257888888765544
No 57
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=68.81 E-value=18 Score=27.61 Aligned_cols=51 Identities=8% Similarity=0.023 Sum_probs=42.6
Q ss_pred ccccccHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhcCccccChhhHHHHHHH
Q 032665 81 TDLRFQSHAVLALQEAAEA-------YLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 131 (136)
Q Consensus 81 ~~~r~~~~Al~aLqea~E~-------~lv~lfe~a~~~a~HakRvTi~~kDiqla~ri 131 (136)
....|+.++++.|.+.+.. .+..+.+.+..+|.-.++-+|+.+|+..+..+
T Consensus 264 ~~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~ 321 (350)
T 1g8p_A 264 PKVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVATM 321 (350)
T ss_dssp GGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHH
Confidence 3568999999999887764 56788888888888889999999999987765
No 58
>1h3o_A Transcription initiation factor TFIID 135 kDa subunit; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=66.48 E-value=5.5 Score=26.01 Aligned_cols=53 Identities=21% Similarity=0.256 Sum_probs=39.6
Q ss_pred hhhhchhHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 032665 62 LIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHA 115 (136)
Q Consensus 62 lipk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~Ha 115 (136)
++...|.++=+.+|...+ +=.-++++....+.-|+|..|-+|+|.....|.|.
T Consensus 2 fL~~~~Lqkri~~I~~k~-gl~~~~~dv~~~iS~a~qeRLr~llekl~~~a~~R 54 (75)
T 1h3o_A 2 FLLQAPLQRRILEIGKKH-GITELHPDVVSYVSHATQQRLQNLVEKISETAQQK 54 (75)
T ss_dssp CSCHHHHHHHHHHHHHTT-TCCEECTTHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred ccccHHHHHHHHHHHHhc-CCCcCChhHHHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 345677888888887764 34568899999999999999999999988887773
No 59
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=62.34 E-value=31 Score=22.85 Aligned_cols=64 Identities=19% Similarity=0.259 Sum_probs=51.3
Q ss_pred hhhchhHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-ccccChhhHHHHHHH
Q 032665 63 IRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAK-RVTIMPKDIQLARRI 131 (136)
Q Consensus 63 ipk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~Hak-RvTi~~kDiqla~ri 131 (136)
++|....+|+..+ .+..++.+.+.+|.-.+-.|+-+|-|.|..+.-.-+ .--|.|..|..|.+-
T Consensus 17 f~k~~vKrl~~~~-----~~~~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~HireA~rr 81 (89)
T 1bh9_B 17 FPKAAIKRLIQSI-----TGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVRR 81 (89)
T ss_dssp CCHHHHHHHHHHH-----HSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH-----cCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHH
Confidence 6666666676666 356889999999999999999999999977766543 558999999999664
No 60
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=49.54 E-value=55 Score=24.92 Aligned_cols=49 Identities=12% Similarity=0.027 Sum_probs=39.5
Q ss_pred cccccHHHHHHHHHHHH------HHHHHHHHHHHHHHhhcCccccChhhHHHHHH
Q 032665 82 DLRFQSHAVLALQEAAE------AYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
Q Consensus 82 ~~r~~~~Al~aLqea~E------~~lv~lfe~a~~~a~HakRvTi~~kDiqla~r 130 (136)
+..|+.++++.+.+.+. -++.++++.+...+...+..+|+.+|++-+..
T Consensus 220 ~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~ 274 (387)
T 2v1u_A 220 PGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARA 274 (387)
T ss_dssp TTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHH
Confidence 46788999999888887 56778888888888777888899999887654
No 61
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=46.35 E-value=22 Score=21.86 Aligned_cols=30 Identities=20% Similarity=0.483 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHhhcCccccChhhHHHHHH
Q 032665 101 LVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
Q Consensus 101 lv~lfe~a~~~a~HakRvTi~~kDiqla~r 130 (136)
|..+..+|.+.|+..++..|+.+|+.-|..
T Consensus 42 i~~l~~eA~~~a~~~~~~~i~~~d~~~Al~ 71 (78)
T 3kw6_A 42 VKGVCTEAGMYALRERRVHVTQEDFEMAVA 71 (78)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 556677788888888999999999998864
No 62
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=45.76 E-value=68 Score=26.17 Aligned_cols=51 Identities=20% Similarity=0.227 Sum_probs=42.7
Q ss_pred cccccHHHHHHHHHHH-H---HHHHHHHHHHHHHHhhcCccccChhhHHHHHHHh
Q 032665 82 DLRFQSHAVLALQEAA-E---AYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 132 (136)
Q Consensus 82 ~~r~~~~Al~aLqea~-E---~~lv~lfe~a~~~a~HakRvTi~~kDiqla~rir 132 (136)
...++.+++..+-..+ + -...++++.|..+|.-.++-+|+.+|++-+..+-
T Consensus 383 ~~~~~~~~~~~i~~~a~~g~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~~~ 437 (456)
T 2c9o_A 383 GINISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISELF 437 (456)
T ss_dssp TCCBCHHHHHHHHHHHHHSCHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHHh
Confidence 4578999998887776 4 4678889999889988899999999999988763
No 63
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=44.88 E-value=99 Score=23.37 Aligned_cols=49 Identities=10% Similarity=0.051 Sum_probs=37.4
Q ss_pred ccccccHHHHHHHHHHHH------HHHHHHHHHHHHHHhhcCccccChhhHHHHH
Q 032665 81 TDLRFQSHAVLALQEAAE------AYLVGLFEDTNLCAIHAKRVTIMPKDIQLAR 129 (136)
Q Consensus 81 ~~~r~~~~Al~aLqea~E------~~lv~lfe~a~~~a~HakRvTi~~kDiqla~ 129 (136)
....++.+++..+.+.+. .++.++++.+...+...+..+|+.+|++.+.
T Consensus 215 ~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~ 269 (386)
T 2qby_A 215 KPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAK 269 (386)
T ss_dssp CSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHH
Confidence 346789999999888777 2456677777777776677889999988654
No 64
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=43.02 E-value=70 Score=22.39 Aligned_cols=48 Identities=8% Similarity=0.070 Sum_probs=34.9
Q ss_pred ccccccHHHHHHHHHHHH---HHHHHHHHHHHHHHhhcCccccChhhHHHHH
Q 032665 81 TDLRFQSHAVLALQEAAE---AYLVGLFEDTNLCAIHAKRVTIMPKDIQLAR 129 (136)
Q Consensus 81 ~~~r~~~~Al~aLqea~E---~~lv~lfe~a~~~a~HakRvTi~~kDiqla~ 129 (136)
.+..++.++++.|.+.++ ..+.++++.+...+...++ +|+.+|++-+.
T Consensus 190 ~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~a~~~~~-~It~~~v~~~l 240 (242)
T 3bos_A 190 RGLQLPEDVGRFLLNRMARDLRTLFDVLDRLDKASMVHQR-KLTIPFVKEML 240 (242)
T ss_dssp TTCCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTC-CCCHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhCC-CCcHHHHHHHh
Confidence 346799999999888776 4566666666666655554 69999998765
No 65
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=40.62 E-value=79 Score=21.52 Aligned_cols=47 Identities=9% Similarity=-0.015 Sum_probs=31.5
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHH
Q 032665 82 DLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
Q Consensus 82 ~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~kDiqla~r 130 (136)
+..++.+++..|.+.+.-.+-.+......++..+ -+|+.+|++-+..
T Consensus 178 ~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~~--~~I~~~~v~~~~~ 224 (226)
T 2chg_A 178 GVKITEDGLEALIYISGGDFRKAINALQGAAAIG--EVVDADTIYQITA 224 (226)
T ss_dssp TCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--SCBCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--ceecHHHHHHHhc
Confidence 4568899988887776644444444444445555 4889999987764
No 66
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=36.99 E-value=40 Score=23.30 Aligned_cols=47 Identities=15% Similarity=0.150 Sum_probs=30.1
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHH
Q 032665 82 DLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLAR 129 (136)
Q Consensus 82 ~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~kDiqla~ 129 (136)
...++.++++.|.+.++-..-.+...+..++..++. +|+.+|++-+.
T Consensus 202 ~~~~~~~~~~~l~~~~~G~~~~~~~~~~~~~~~~~~-~i~~~~v~~~~ 248 (250)
T 1njg_A 202 HIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG-QVSTQAVSAML 248 (250)
T ss_dssp TCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHTTTTS-SBCHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhccCc-eecHHHHHHHh
Confidence 467889999888887764443333333333444443 89999988654
No 67
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=36.77 E-value=38 Score=21.10 Aligned_cols=27 Identities=22% Similarity=0.431 Sum_probs=20.6
Q ss_pred HHHHHHHHHhhcCccccChhhHHHHHH
Q 032665 104 LFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
Q Consensus 104 lfe~a~~~a~HakRvTi~~kDiqla~r 130 (136)
+..+|.+.|+..++..|+.+|+.-|..
T Consensus 40 l~~eAa~~ai~~~~~~i~~~df~~Al~ 66 (82)
T 2dzn_B 40 IMQEAGLRAVRKNRYVILQSDLEEAYA 66 (82)
T ss_dssp HHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCcCHHHHHHHHH
Confidence 345666777777888999999988764
No 68
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=36.57 E-value=33 Score=25.15 Aligned_cols=31 Identities=32% Similarity=0.333 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHhhcCccccChhhHHHHH
Q 032665 99 AYLVGLFEDTNLCAIHAKRVTIMPKDIQLAR 129 (136)
Q Consensus 99 ~~lv~lfe~a~~~a~HakRvTi~~kDiqla~ 129 (136)
.-|..+.+.|...|...++.+|+.+|++-+.
T Consensus 223 ~dl~~~~~~a~~~a~~~~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 223 ADLENLLNEAALLAAREGRRKITMKDLEEAA 253 (254)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSBCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcCCCcCHHHHHHHh
Confidence 3466777788788888788899999998653
No 69
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=35.14 E-value=41 Score=21.40 Aligned_cols=30 Identities=27% Similarity=0.307 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHhhcCccccChhhHHHHHH
Q 032665 101 LVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
Q Consensus 101 lv~lfe~a~~~a~HakRvTi~~kDiqla~r 130 (136)
|..|..+|.+.|++..+..|+.+|+.-|..
T Consensus 40 l~~l~~eAa~~a~r~~~~~i~~~df~~Al~ 69 (88)
T 3vlf_B 40 LRSVCTEAGMFAIRARRKVATEKDFLKAVD 69 (88)
T ss_dssp HHHHHHHHHHHHHHHSCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccCCHHHHHHHHH
Confidence 455566677788888889999999998875
No 70
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=31.71 E-value=47 Score=20.53 Aligned_cols=30 Identities=17% Similarity=0.429 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHhhcCccccChhhHHHHHH
Q 032665 101 LVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
Q Consensus 101 lv~lfe~a~~~a~HakRvTi~~kDiqla~r 130 (136)
|..+..+|.+.|+...+..|+.+|+.-|..
T Consensus 40 i~~l~~eA~~~a~~~~~~~i~~~df~~Al~ 69 (83)
T 3aji_B 40 INSICQESGMLAVRENRYIVLAKDFEKAYK 69 (83)
T ss_dssp HHHHHHHHHHGGGTSCCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCcCHHHHHHHHH
Confidence 334456677778888889999999988764
No 71
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=30.79 E-value=1.7e+02 Score=22.31 Aligned_cols=47 Identities=11% Similarity=0.004 Sum_probs=34.3
Q ss_pred cccccHHHHHHHHHHHH---H---HHHHHHHHHHHHHhhcCccccChhhHHHHHH
Q 032665 82 DLRFQSHAVLALQEAAE---A---YLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
Q Consensus 82 ~~r~~~~Al~aLqea~E---~---~lv~lfe~a~~~a~HakRvTi~~kDiqla~r 130 (136)
+..++.++++.+.+.+. - ++.++++.+...|. +..+|+.+|+..+..
T Consensus 216 ~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~ 268 (384)
T 2qby_B 216 KGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIV 268 (384)
T ss_dssp TTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHH
T ss_pred cCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHH
Confidence 45788999988888776 2 45667777776666 556788899887653
No 72
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=30.44 E-value=45 Score=24.46 Aligned_cols=32 Identities=16% Similarity=0.217 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHhhcCccccChhhHHHHHHH
Q 032665 100 YLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 131 (136)
Q Consensus 100 ~lv~lfe~a~~~a~HakRvTi~~kDiqla~ri 131 (136)
-|..+.+.|...|...++.+|+.+|+.-|...
T Consensus 220 dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~ 251 (257)
T 1lv7_A 220 DLANLVNEAALFAARGNKRVVSMVEFEKAKDK 251 (257)
T ss_dssp HHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCcccHHHHHHHHHH
Confidence 46677788888888888899999999987653
No 73
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=29.91 E-value=79 Score=24.29 Aligned_cols=63 Identities=16% Similarity=0.085 Sum_probs=41.3
Q ss_pred hHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHHHh
Q 032665 68 FQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 132 (136)
Q Consensus 68 F~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~kDiqla~rir 132 (136)
....|++++.+ .+..++.+|+..|-+.++.=+-.+......++.+++--+|+.+||+-+....
T Consensus 147 l~~~l~~~~~~--~g~~i~~~a~~~l~~~~~gdl~~~~~elekl~l~~~~~~It~e~V~~~~~~~ 209 (343)
T 1jr3_D 147 LPRWVAARAKQ--LNLELDDAANQVLCYCYEGNLLALAQALERLSLLWPDGKLTLPRVEQAVNDA 209 (343)
T ss_dssp HHHHHHHHHHH--TTCEECHHHHHHHHHSSTTCHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--cCCCCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhh
Confidence 34455555443 4578999999999887775555555555555665544589999987765443
No 74
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=29.33 E-value=59 Score=20.68 Aligned_cols=72 Identities=18% Similarity=0.297 Sum_probs=39.9
Q ss_pred cccCCCchhhHHHhhh-hhhhhhhhhhchhHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcc
Q 032665 40 HRYRPGTVALREIRKY-QKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRV 118 (136)
Q Consensus 40 ~r~~~g~~~l~EIr~~-q~st~llipk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRv 118 (136)
+...|....-.+|=+. -+.. .+-+-..|..|+ . ....||..-|..| -.+|.+.|+...+.
T Consensus 7 ~~~~Pd~~~R~~IL~~~l~~~-~l~~dvdl~~LA----~---~T~G~SGADL~~l-----------~~eAa~~alr~~~~ 67 (86)
T 2krk_A 7 HHSHPNEEARLDILKIHSRKM-NLTRGINLRKIA----E---LMPGASGAEVKGV-----------CTEAGMYALRERRV 67 (86)
T ss_dssp CCCCCCHHHHHHHHHHHTTTS-EECTTCCCHHHH----H---TCSSCCHHHHHHH-----------HHHHHHHHHHTTCS
T ss_pred CCCCcCHHHHHHHHHHHHcCC-CCCcccCHHHHH----H---HcCCCCHHHHHHH-----------HHHHHHHHHHHcCC
Confidence 3446777777777332 2221 111223344433 2 2235665555444 44555666666788
Q ss_pred ccChhhHHHHHH
Q 032665 119 TIMPKDIQLARR 130 (136)
Q Consensus 119 Ti~~kDiqla~r 130 (136)
.|+.+|+.-|..
T Consensus 68 ~I~~~df~~Al~ 79 (86)
T 2krk_A 68 HVTQEDFEMAVA 79 (86)
T ss_dssp EECHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 999999988864
No 75
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=26.57 E-value=61 Score=24.20 Aligned_cols=30 Identities=30% Similarity=0.317 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHhhcCccccChhhHHHHH
Q 032665 100 YLVGLFEDTNLCAIHAKRVTIMPKDIQLAR 129 (136)
Q Consensus 100 ~lv~lfe~a~~~a~HakRvTi~~kDiqla~ 129 (136)
-|..+.+.|...|...++.+|+.+|+.-|.
T Consensus 248 dl~~l~~~a~~~a~~~~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 248 DLENLLNEAALLAAREGRRKITMKDLEEAA 277 (278)
T ss_dssp HHHHHHHHHHHHHHHTTCCSBCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCCCCcCHHHHHHHh
Confidence 456677777777777778889999998653
No 76
>1eoq_A GAG polyprotein capsid protein P27; virus/viral protein; NMR {Rous sarcoma virus - prague C} SCOP: a.28.3.1
Probab=25.75 E-value=78 Score=21.44 Aligned_cols=17 Identities=6% Similarity=0.184 Sum_probs=13.7
Q ss_pred hhchhHHHHHHHHhhhh
Q 032665 64 RKLPFQRLVREIAQDFK 80 (136)
Q Consensus 64 pk~pF~Rlvrei~~~~~ 80 (136)
||.||..||......+.
T Consensus 7 PkEPFrDyVdRf~kalr 23 (96)
T 1eoq_A 7 PSESFVDFANRLIKAVE 23 (96)
T ss_dssp TTCCHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHH
Confidence 79999999988766543
No 77
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=24.68 E-value=2.3e+02 Score=21.44 Aligned_cols=49 Identities=10% Similarity=0.267 Sum_probs=37.7
Q ss_pred cccccHHHHHHHHHHH---------H---HHHHHHHHHHHHHHhhcCccccChhhHHHHHH
Q 032665 82 DLRFQSHAVLALQEAA---------E---AYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
Q Consensus 82 ~~r~~~~Al~aLqea~---------E---~~lv~lfe~a~~~a~HakRvTi~~kDiqla~r 130 (136)
+..|+.++++.+.+.+ + -++.++++.+...+...+.-+|+.+|+.-+..
T Consensus 212 ~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~ 272 (389)
T 1fnn_A 212 EGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSK 272 (389)
T ss_dssp TTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Confidence 3478999999998888 3 34677777777777777788899999887654
No 78
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=22.45 E-value=78 Score=26.73 Aligned_cols=32 Identities=19% Similarity=0.412 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHhhcCccccChhhHHHHHH
Q 032665 99 AYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
Q Consensus 99 ~~lv~lfe~a~~~a~HakRvTi~~kDiqla~r 130 (136)
+-|..|..+|.+.|+..++..|+.+|+.-|..
T Consensus 390 ADI~~l~~eA~~~Air~~~~~It~eDf~~Al~ 421 (437)
T 4b4t_I 390 ADIQAMCTEAGLLALRERRMQVTAEDFKQAKE 421 (437)
T ss_dssp HHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 44566677788889999999999999998764
No 79
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=22.31 E-value=85 Score=21.25 Aligned_cols=30 Identities=20% Similarity=0.298 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCcc
Q 032665 89 AVLALQEAAEAYLVGLFEDTNLCAIHAKRV 118 (136)
Q Consensus 89 Al~aLqea~E~~lv~lfe~a~~~a~HakRv 118 (136)
....+..-.|..-..||+.||.+..-+++.
T Consensus 48 ~~~~ie~ElEeLTasLFeEAN~MVa~ar~e 77 (97)
T 2eqb_B 48 EADKLNKEVEDLTASLFDEANNMVADARKE 77 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355577777999999999999998887654
No 80
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=22.25 E-value=83 Score=29.08 Aligned_cols=38 Identities=11% Similarity=0.155 Sum_probs=33.3
Q ss_pred chhHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHH
Q 032665 66 LPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFED 107 (136)
Q Consensus 66 ~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~ 107 (136)
.-|.--+|+|++++++++-+..+||+-+ |..+..|+-.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 58 (1049)
T 3ksy_A 21 GLLVPALKKVQGQVHPTLESNDDALQYV----EELILQLLNM 58 (1049)
T ss_dssp SSSHHHHHHHHHHHCTTSBCCHHHHHHH----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCccHhHHHHH----HHHHHHHHHH
Confidence 3477789999999999999999999998 9998888754
No 81
>3qb5_K Translin-associated protein X; alpha helical bundle, ribonuclease, hydrolase; 2.95A {Homo sapiens} PDB: 3pja_J
Probab=21.67 E-value=1.6e+02 Score=23.20 Aligned_cols=26 Identities=27% Similarity=0.197 Sum_probs=19.0
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHH
Q 032665 82 DLRFQSHAVLALQEAAEAYLVGLFED 107 (136)
Q Consensus 82 ~~r~~~~Al~aLqea~E~~lv~lfe~ 107 (136)
.++|...--.+|||.+|++.-.-|=.
T Consensus 113 ~yry~~~~s~~lQEyVEA~sf~~yL~ 138 (290)
T 3qb5_K 113 MHQFHRAITTGLQEYVEAVSFQHFIK 138 (290)
T ss_dssp STTTGGGTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 47787666679999999877655543
No 82
>3ts9_A Interferon-induced helicase C domain-containing P; helix bundle, fancm helicase, super family 2 helicase, SF2 H DEXD/H helicase; 2.00A {Mus musculus}
Probab=21.34 E-value=1.5e+02 Score=21.18 Aligned_cols=17 Identities=29% Similarity=0.522 Sum_probs=14.0
Q ss_pred hhchhHHHHHHHHhhhh
Q 032665 64 RKLPFQRLVREIAQDFK 80 (136)
Q Consensus 64 pk~pF~Rlvrei~~~~~ 80 (136)
+.-||...+.+|+.+++
T Consensus 6 ~~DPF~d~l~~iM~~Ie 22 (138)
T 3ts9_A 6 RENPFKEKLLEIMASIQ 22 (138)
T ss_dssp -CCHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHH
Confidence 56799999999998874
No 83
>2kru_A Light-independent protochlorophyllide reductase subunit B; NESG, PSI, BCHB, bacteriochlorophyll biosynthesis, chlorophyll biosynthesis; NMR {Chlorobaculum tepidum}
Probab=20.99 E-value=1e+02 Score=19.13 Aligned_cols=49 Identities=12% Similarity=0.110 Sum_probs=27.0
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHH-HHHHHhhcCccccChhhHHHHHHH
Q 032665 82 DLRFQSHAVLALQEAAEAYLVGLFED-TNLCAIHAKRVTIMPKDIQLARRI 131 (136)
Q Consensus 82 ~~r~~~~Al~aLqea~E~~lv~lfe~-a~~~a~HakRvTi~~kDiqla~ri 131 (136)
++.|+++|...|..+ =.|+-.-... +-..|.-.+...|+.+.|.-|..-
T Consensus 3 ~l~Wt~EAe~~LkkI-P~FVR~kvrr~tE~~Are~G~~~IT~ev~~~AK~~ 52 (63)
T 2kru_A 3 ELSWTAEAEKMLGKV-PFFVRKKVRKNTDNYAREIGEPVVTADVFRKAKEH 52 (63)
T ss_dssp CCEECHHHHHHHTTS-CHHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHhC-CHHHHHHHHHHHHHHHHHcCCCeEcHHHHHHHHHH
Confidence 455666666666332 1233332222 245566777777777777766543
No 84
>3iz6_V 40S ribosomal protein S25 (S25E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=20.26 E-value=1.1e+02 Score=20.96 Aligned_cols=40 Identities=23% Similarity=0.499 Sum_probs=26.5
Q ss_pred CCCCCCCCcccCCCchhhHHHhhhhhhhhhhhhhchhHHHHHHHHh
Q 032665 32 TTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQ 77 (136)
Q Consensus 32 ~~~~~~k~~r~~~g~~~l~EIr~~q~st~llipk~pF~Rlvrei~~ 77 (136)
.+|+..+++.|..|.+-- +.+. -.|+.+.-|.+|.+||-.
T Consensus 18 ~~ggk~~KKKWsKgk~kd----k~nn--~Vl~Dk~t~dkl~KEVpk 57 (108)
T 3iz6_V 18 SGGGKQKKKKWSKGKQKE----KVNN--SVLFDKATYDKLLSEVPK 57 (108)
T ss_dssp TCCCCCCCCSCCCCCCSH----HHHS--HHHHSSHHHHHHHHHHHH
T ss_pred hcCCCccccccccccHHH----HhcC--cEeECHHHHHHHHHHccC
Confidence 345545567788776422 1222 268899999999999954
No 85
>2dsy_A Hypothetical protein TTHA0281; structural genomics, thermus thermophilus HB8, NPPSFA; HET: NHE; 1.90A {Thermus thermophilus} SCOP: d.304.1.2
Probab=20.10 E-value=96 Score=19.82 Aligned_cols=22 Identities=27% Similarity=0.279 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 032665 87 SHAVLALQEAAEAYLVGLFEDT 108 (136)
Q Consensus 87 ~~Al~aLqea~E~~lv~lfe~a 108 (136)
.+|+..+++|.+.+|..+.++-
T Consensus 47 eEA~~~a~eAl~~~le~~~e~g 68 (87)
T 2dsy_A 47 KECEANLQAALEDWLLFLLSRG 68 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHCC
Confidence 6889999999999998887754
Done!