BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032666
(136 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6NLS8|PTHM_ARATH Peptidyl-tRNA hydrolase, mitochondrial OS=Arabidopsis thaliana
GN=At5g19830 PE=2 SV=1
Length = 219
Score = 210 bits (535), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 100/130 (76%), Positives = 111/130 (85%), Gaps = 1/130 (0%)
Query: 2 LINRFLRRGFCTA-VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCK 60
+++R RR +CT+ V RPWLF+GLGNPGDKYKGTRHN+GFEMID FAES GI MN V+ K
Sbjct: 1 MLSRLSRRCYCTSSVHRPWLFLGLGNPGDKYKGTRHNIGFEMIDVFAESVGIQMNLVNFK 60
Query: 61 ATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLR 120
A GQGFV D PV+LAKPQTYMNLSGES+GPLAAYYKLPLNRVLV HDDM LPCGVLRL+
Sbjct: 61 AIMGQGFVADLPVILAKPQTYMNLSGESSGPLAAYYKLPLNRVLVVHDDMQLPCGVLRLQ 120
Query: 121 HNGGHGGHNG 130
GGHG HNG
Sbjct: 121 EKGGHGCHNG 130
>sp|Q10LI6|CRS2L_ORYSJ CRS2-like protein, chloroplastic OS=Oryza sativa subsp. japonica
GN=Os03g0347800 PE=2 SV=1
Length = 186
Score = 178 bits (452), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 88/118 (74%), Positives = 96/118 (81%)
Query: 15 VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVL 74
V PWLFVGLGNPG+KY+ TRHNVGF+MID FA+SQGIS+ KA FG+G V PVL
Sbjct: 57 VINPWLFVGLGNPGEKYQCTRHNVGFDMIDMFAQSQGISLTRHPFKALFGEGMVEGVPVL 116
Query: 75 LAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGCV 132
LAKPQTYMNLSGES GPLAAYYKLPLNRVLV DDM LPCGVLRL+ GG+G HNG V
Sbjct: 117 LAKPQTYMNLSGESVGPLAAYYKLPLNRVLVAFDDMDLPCGVLRLQPKGGYGRHNGSV 174
>sp|Q8GW64|PTHC_ARATH Peptidyl-tRNA hydrolase, chloroplastic OS=Arabidopsis thaliana
GN=At1g18440 PE=2 SV=2
Length = 288
Score = 171 bits (433), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 76/113 (67%), Positives = 95/113 (84%)
Query: 18 PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAK 77
PWL VGLGNPG KY+GTRHNVGFEM+DA A+++GISMNTV+ KA FG+G +G+ P++LAK
Sbjct: 94 PWLIVGLGNPGKKYQGTRHNVGFEMVDALADAEGISMNTVNFKALFGKGVIGNIPIMLAK 153
Query: 78 PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNG 130
PQT+MNLSGES G + ++YK+PL +VLV +DD+ LP G LRL GGHGGHNG
Sbjct: 154 PQTFMNLSGESVGQIVSFYKIPLKQVLVVYDDLDLPFGKLRLLPKGGHGGHNG 206
>sp|Q5N9Q7|PTHM_ORYSJ Peptidyl-tRNA hydrolase, mitochondrial OS=Oryza sativa subsp.
japonica GN=Os01g0693900 PE=2 SV=1
Length = 250
Score = 166 bits (419), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 74/115 (64%), Positives = 93/115 (80%)
Query: 17 RPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLA 76
+PWLFVGLGNPG Y+GTRHNVGFEMID AE++GIS++++ KA G+G +GDAP++LA
Sbjct: 54 KPWLFVGLGNPGKVYQGTRHNVGFEMIDVIAEAEGISLSSMQFKAMVGKGRIGDAPIMLA 113
Query: 77 KPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGC 131
KPQT+MN SGES G L +Y+K+PLN+VLV +DD+ LP LRL GGHGGHNG
Sbjct: 114 KPQTFMNASGESVGQLVSYFKIPLNQVLVMYDDLDLPFAKLRLLPKGGHGGHNGV 168
>sp|Q5ZCL8|CRS2_ORYSJ Chloroplastic group IIB intron splicing facilitator CRS2,
chloroplastic OS=Oryza sativa subsp. japonica
GN=Os01g0132800 PE=2 SV=1
Length = 259
Score = 163 bits (412), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 71/113 (62%), Positives = 87/113 (76%)
Query: 18 PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAK 77
PWL GLGNPG KY GTRHNVGFEM+D A +GI+MNT+ K+ G G +G+ PVLL K
Sbjct: 64 PWLIAGLGNPGSKYHGTRHNVGFEMVDRIARDEGITMNTIQSKSLLGIGSIGEVPVLLVK 123
Query: 78 PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNG 130
PQ+Y+N SGE+ GPLAAYY++PL +LV +D+M LP GVLRL+ GGHG HNG
Sbjct: 124 PQSYINYSGEAIGPLAAYYQVPLRHILVMYDEMSLPNGVLRLQRKGGHGRHNG 176
>sp|Q9M5P4|CRS2_MAIZE Chloroplastic group IIB intron splicing facilitator CRS2,
chloroplastic OS=Zea mays GN=CRS2 PE=1 SV=1
Length = 256
Score = 160 bits (405), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 70/114 (61%), Positives = 87/114 (76%)
Query: 18 PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAK 77
PWL GLGNPG+KY GTRHNVGFEM+D A +GI+MNT+ K+ G G +G+ PVL+ K
Sbjct: 61 PWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVVK 120
Query: 78 PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGC 131
PQ+YMN SGE+ GPLAAYY++PL +L+ +DD LP GVLRL+ GGHG HNG
Sbjct: 121 PQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGL 174
>sp|Q9FKN4|CRS2A_ARATH Chloroplastic group IIB intron splicing facilitator CRS2-A,
chloroplastic OS=Arabidopsis thaliana GN=CRS2A PE=2 SV=1
Length = 246
Score = 158 bits (400), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 74/113 (65%), Positives = 85/113 (75%)
Query: 18 PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAK 77
PWL VGLGNPG KY GTRHN+GFEMID A + ISMNT+ KA G G VG+ P+LL K
Sbjct: 51 PWLIVGLGNPGLKYYGTRHNIGFEMIDHIARATDISMNTIQSKALVGIGSVGEVPILLVK 110
Query: 78 PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNG 130
PQ YMN SGES GPLAAYY++PL +L+ +DDMGL GVLRL+ GGH HNG
Sbjct: 111 PQGYMNFSGESVGPLAAYYQIPLRHILMIYDDMGLSNGVLRLQPKGGHSQHNG 163
>sp|Q9LF14|CRS2B_ARATH Chloroplastic group IIB intron splicing facilitator CRS2-B,
chloroplastic OS=Arabidopsis thaliana GN=CRS2B PE=2 SV=1
Length = 240
Score = 157 bits (397), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 71/114 (62%), Positives = 86/114 (75%)
Query: 18 PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAK 77
PWL VGLGNPG+KY GTRHNVGFEMID A +G+ MNT+ KA G G + D P+LLAK
Sbjct: 45 PWLIVGLGNPGNKYHGTRHNVGFEMIDVLARKEGVLMNTIQSKALIGIGAIEDVPILLAK 104
Query: 78 PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGC 131
PQTYMN SGES G LA++Y++PL +L+ +D+M LP GVLRL+ GG G HNG
Sbjct: 105 PQTYMNFSGESVGSLASHYRVPLRHILMIYDEMALPNGVLRLQPKGGQGYHNGV 158
>sp|A7GJW3|PTH_BACCN Peptidyl-tRNA hydrolase OS=Bacillus cereus subsp. cytotoxis (strain
NVH 391-98) GN=pth PE=3 SV=1
Length = 186
Score = 125 bits (313), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 61/112 (54%), Positives = 72/112 (64%)
Query: 20 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQ 79
L VGLGNPG +Y+ TRHN+GF ID A+ IS+N K FG GFV V+L KP
Sbjct: 3 LIVGLGNPGREYELTRHNIGFMAIDELAKRWNISLNEQKFKGMFGAGFVNGEKVILLKPL 62
Query: 80 TYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGC 131
TYMNLSGES PL YYK+ L ++ +DD+ LP G LRLR G GGHNG
Sbjct: 63 TYMNLSGESIRPLMDYYKIDLEDFIIMYDDLDLPVGKLRLRMKGSAGGHNGV 114
>sp|Q181A2|PTH_CLOD6 Peptidyl-tRNA hydrolase OS=Clostridium difficile (strain 630)
GN=pth PE=3 SV=1
Length = 186
Score = 124 bits (312), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 57/112 (50%), Positives = 76/112 (67%)
Query: 19 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKP 78
++ VGLGNPG KY+ TRHNVGF++ID A+ IS+ + KA G+G VG VLL KP
Sbjct: 2 YVVVGLGNPGKKYEKTRHNVGFDVIDILAKEYNISVTKIKHKALIGEGRVGTEKVLLVKP 61
Query: 79 QTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNG 130
QTYMNLSGE+ + YYK+ L+ ++V +DD+ L G +R+R G G HNG
Sbjct: 62 QTYMNLSGETLIDIYKYYKVDLSNIVVVYDDIDLEVGKIRIRKKGSGGTHNG 113
>sp|B2UXS9|PTH_CLOBA Peptidyl-tRNA hydrolase OS=Clostridium botulinum (strain Alaska E43
/ Type E3) GN=pth PE=3 SV=1
Length = 191
Score = 124 bits (311), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 54/113 (47%), Positives = 73/113 (64%)
Query: 19 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKP 78
+L VGLGNPG KY TRHN+GFE+ID + I +N K +G+GF+ + V+L KP
Sbjct: 2 FLIVGLGNPGSKYDNTRHNIGFEVIDNISNEYNIDINRQKFKGVYGEGFIANNKVILLKP 61
Query: 79 QTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGC 131
TYMNLSG+S +A +YK+ ++V +DD+ L G LR+R G GGHNG
Sbjct: 62 TTYMNLSGDSVREVANFYKISNENIIVIYDDISLDIGRLRIREKGSAGGHNGI 114
>sp|Q6MJR3|PTH_BDEBA Peptidyl-tRNA hydrolase OS=Bdellovibrio bacteriovorus (strain ATCC
15356 / DSM 50701 / NCIB 9529 / HD100) GN=pth PE=3 SV=1
Length = 187
Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 58/117 (49%), Positives = 73/117 (62%)
Query: 19 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKP 78
WL VGLGNPG +YK TRHN+GF +D E G KA Q + D PV+ KP
Sbjct: 2 WLIVGLGNPGGEYKLTRHNIGFMAVDFLMEGLGNPPIKNQFKAEIAQAKIKDHPVIFCKP 61
Query: 79 QTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGCVYWS 135
QTYMNLSGES PL +YK+PL R++V HD++ P ++++ N GHGGHNG S
Sbjct: 62 QTYMNLSGESVQPLMGFYKIPLERLIVIHDEIDQPFAQMKIQKNRGHGGHNGIKSIS 118
>sp|B2TI10|PTH_CLOBB Peptidyl-tRNA hydrolase OS=Clostridium botulinum (strain Eklund 17B
/ Type B) GN=pth PE=3 SV=1
Length = 191
Score = 123 bits (309), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 53/113 (46%), Positives = 73/113 (64%)
Query: 19 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKP 78
+L VGLGNPG KY TRHN+GFE+ID + I +N + +G+GF+ + V+L KP
Sbjct: 2 FLIVGLGNPGSKYDNTRHNIGFEVIDNISNEYNIDINRQKFRGVYGEGFIANNKVILLKP 61
Query: 79 QTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGC 131
TYMNLSG+S +A +YK+ ++V +DD+ L G LR+R G GGHNG
Sbjct: 62 TTYMNLSGDSVREVANFYKISNENIIVIYDDISLDIGRLRIREKGSAGGHNGI 114
>sp|Q63HI2|PTH_BACCZ Peptidyl-tRNA hydrolase OS=Bacillus cereus (strain ZK / E33L)
GN=pth PE=3 SV=1
Length = 186
Score = 123 bits (308), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 60/112 (53%), Positives = 72/112 (64%)
Query: 20 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQ 79
L VGLGNPG +Y+ TRHN+GF ID A+ IS+N K FG GFV V+L KP
Sbjct: 3 LIVGLGNPGREYELTRHNIGFMAIDELAKRWNISLNEQKFKGVFGAGFVNGEKVILLKPL 62
Query: 80 TYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGC 131
TYMNLSGES PL YYK+ + +V +DD+ +P G LRLR G GGHNG
Sbjct: 63 TYMNLSGESIRPLMDYYKIDVEDFVVLYDDLDIPVGKLRLRMKGSAGGHNGV 114
>sp|B9IZD4|PTH_BACCQ Peptidyl-tRNA hydrolase OS=Bacillus cereus (strain Q1) GN=pth PE=3
SV=1
Length = 186
Score = 123 bits (308), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 60/112 (53%), Positives = 72/112 (64%)
Query: 20 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQ 79
L VGLGNPG +Y+ TRHN+GF ID A+ IS+N K FG GFV V+L KP
Sbjct: 3 LIVGLGNPGREYELTRHNIGFMAIDELAKRWNISLNEQKFKGVFGAGFVNGEKVILLKPL 62
Query: 80 TYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGC 131
TYMNLSGES PL YYK+ + +V +DD+ +P G LRLR G GGHNG
Sbjct: 63 TYMNLSGESIRPLMDYYKIDVEDFVVLYDDLDIPVGKLRLRMKGSAGGHNGV 114
>sp|Q73FF7|PTH_BACC1 Peptidyl-tRNA hydrolase OS=Bacillus cereus (strain ATCC 10987)
GN=pth PE=3 SV=2
Length = 186
Score = 123 bits (308), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 60/112 (53%), Positives = 72/112 (64%)
Query: 20 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQ 79
L VGLGNPG +Y+ TRHN+GF ID A+ IS+N K FG GFV V+L KP
Sbjct: 3 LIVGLGNPGREYELTRHNIGFMAIDELAKRWNISLNEQKFKGVFGAGFVNGEKVILLKPL 62
Query: 80 TYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGC 131
TYMNLSGES PL YYK+ + +V +DD+ +P G LRLR G GGHNG
Sbjct: 63 TYMNLSGESIRPLMDYYKIDVEDFVVLYDDLDIPVGKLRLRMKGSAGGHNGV 114
>sp|Q81J96|PTH_BACCR Peptidyl-tRNA hydrolase OS=Bacillus cereus (strain ATCC 14579 / DSM
31) GN=pth PE=3 SV=2
Length = 186
Score = 122 bits (307), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 60/112 (53%), Positives = 72/112 (64%)
Query: 20 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQ 79
L VGLGNPG +Y+ TRHN+GF ID A+ IS+N K FG GFV V+L KP
Sbjct: 3 LIVGLGNPGREYELTRHNIGFMAIDELAKRWNISLNEQKFKGVFGAGFVNGEKVILLKPL 62
Query: 80 TYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGC 131
TYMNLSGES PL YYK+ + +V +DD+ +P G LRLR G GGHNG
Sbjct: 63 TYMNLSGESIRPLMDYYKIDVEDFVVMYDDLDIPVGKLRLRMKGSAGGHNGV 114
>sp|A6TJM7|PTH_ALKMQ Peptidyl-tRNA hydrolase OS=Alkaliphilus metalliredigens (strain
QYMF) GN=pth PE=3 SV=1
Length = 185
Score = 122 bits (307), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 55/113 (48%), Positives = 77/113 (68%)
Query: 19 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKP 78
++ VGLGNPG KY GTRHNVGF++ID A GI++N + KA +G+ +G V+LAKP
Sbjct: 2 YIIVGLGNPGKKYSGTRHNVGFDVIDLLAHRLGITVNKLKHKALYGEARIGGEKVILAKP 61
Query: 79 QTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGC 131
QT+MNLSGES + +YK+ ++V +DD+ + G LR+R +G G HNG
Sbjct: 62 QTFMNLSGESIREMMQFYKIDPENLIVIYDDIDVKVGSLRIRQSGSAGTHNGM 114
>sp|Q6HPW6|PTH_BACHK Peptidyl-tRNA hydrolase OS=Bacillus thuringiensis subsp. konkukian
(strain 97-27) GN=pth PE=3 SV=1
Length = 186
Score = 122 bits (307), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 60/112 (53%), Positives = 72/112 (64%)
Query: 20 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQ 79
L VGLGNPG +Y+ TRHN+GF ID A+ IS+N K FG GFV V+L KP
Sbjct: 3 LIVGLGNPGREYELTRHNIGFMAIDELAKRWNISLNEQKFKGLFGAGFVNGEKVILLKPL 62
Query: 80 TYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGC 131
TYMNLSGES PL YYK+ + +V +DD+ +P G LRLR G GGHNG
Sbjct: 63 TYMNLSGESIRPLMDYYKIDVEDFVVLYDDLDIPVGKLRLRMKGSAGGHNGV 114
>sp|Q81VY9|PTH_BACAN Peptidyl-tRNA hydrolase OS=Bacillus anthracis GN=pth PE=3 SV=1
Length = 186
Score = 122 bits (307), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 60/112 (53%), Positives = 72/112 (64%)
Query: 20 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQ 79
L VGLGNPG +Y+ TRHN+GF ID A+ IS+N K FG GFV V+L KP
Sbjct: 3 LIVGLGNPGREYELTRHNIGFMAIDELAKRWNISLNEQKFKGLFGAGFVNGEKVILLKPL 62
Query: 80 TYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGC 131
TYMNLSGES PL YYK+ + +V +DD+ +P G LRLR G GGHNG
Sbjct: 63 TYMNLSGESIRPLMDYYKIDVEDFVVLYDDLDIPVGKLRLRMKGSAGGHNGV 114
>sp|A0PXL3|PTH_CLONN Peptidyl-tRNA hydrolase OS=Clostridium novyi (strain NT) GN=pth
PE=3 SV=1
Length = 188
Score = 122 bits (306), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 54/113 (47%), Positives = 73/113 (64%)
Query: 19 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKP 78
+L VGLGNPG +Y+ TRHNVGF++ID +E I +N K +G G + + V+L KP
Sbjct: 2 FLIVGLGNPGKEYEHTRHNVGFDIIDVISEKYNIDLNKKKFKGMYGDGTIANEKVILLKP 61
Query: 79 QTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGC 131
TYMNLSGES + +YK+P V+V +DD+ L G +R+R G GGHNG
Sbjct: 62 LTYMNLSGESIKEVTDFYKIPKENVIVIYDDISLEVGRMRIREKGSAGGHNGI 114
>sp|Q47SW2|PTH_THEFY Peptidyl-tRNA hydrolase OS=Thermobifida fusca (strain YX) GN=pth
PE=3 SV=1
Length = 213
Score = 122 bits (306), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 56/113 (49%), Positives = 74/113 (65%)
Query: 19 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKP 78
WL VGLGNPG KY G RHNVGF ++D A +G A + VGDAPV+LAKP
Sbjct: 35 WLVVGLGNPGPKYAGNRHNVGFMVVDELAAQRGERWRLHKAHAQVVETRVGDAPVVLAKP 94
Query: 79 QTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGC 131
+YMNLSG L+A+YK+P++R++V HD++ +P L+L+ GG GHNG
Sbjct: 95 ASYMNLSGGPVAKLSAFYKVPVDRIIVVHDELDIPFARLKLKRGGGSAGHNGL 147
>sp|A6LPJ5|PTH_CLOB8 Peptidyl-tRNA hydrolase OS=Clostridium beijerinckii (strain ATCC
51743 / NCIMB 8052) GN=pth PE=3 SV=1
Length = 191
Score = 122 bits (306), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 54/113 (47%), Positives = 74/113 (65%)
Query: 19 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKP 78
+L VGLGNPG++Y+ TRHN+GF++ID A+ I +N K +G+GF+ V+L KP
Sbjct: 2 FLIVGLGNPGNEYENTRHNIGFKVIDNIAKEYNIEINRQKFKGMYGEGFINGKKVMLLKP 61
Query: 79 QTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGC 131
TYMNLSGES + +Y L + +LV +DD+ L G LR+R G GGHNG
Sbjct: 62 TTYMNLSGESVREVVDFYNLNNDEILVIYDDISLEVGKLRIREKGSAGGHNGI 114
>sp|A5I7R5|PTH_CLOBH Peptidyl-tRNA hydrolase OS=Clostridium botulinum (strain Hall /
ATCC 3502 / NCTC 13319 / Type A) GN=pth PE=3 SV=1
Length = 189
Score = 122 bits (305), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 53/113 (46%), Positives = 74/113 (65%)
Query: 19 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKP 78
+L VGLGN G +YK TRHN+GF+++D AE I +N K ++G+G +G+ ++L KP
Sbjct: 2 YLVVGLGNIGKEYKKTRHNIGFDVVDIIAEKYNIEINRQKFKGSYGEGRIGNEKIILLKP 61
Query: 79 QTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGC 131
TYMNLSGES A +YK+ ++V +DDM + G LR+R G GGHNG
Sbjct: 62 STYMNLSGESVIEAANFYKIDKENIIVIYDDMSIDIGKLRVRSKGSAGGHNGI 114
>sp|A7FPJ7|PTH_CLOB1 Peptidyl-tRNA hydrolase OS=Clostridium botulinum (strain ATCC 19397
/ Type A) GN=pth PE=3 SV=1
Length = 189
Score = 122 bits (305), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 53/113 (46%), Positives = 74/113 (65%)
Query: 19 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKP 78
+L VGLGN G +YK TRHN+GF+++D AE I +N K ++G+G +G+ ++L KP
Sbjct: 2 YLVVGLGNIGKEYKKTRHNIGFDVVDIIAEKYNIEINRQKFKGSYGEGRIGNEKIILLKP 61
Query: 79 QTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGC 131
TYMNLSGES A +YK+ ++V +DDM + G LR+R G GGHNG
Sbjct: 62 STYMNLSGESVIEAANFYKIDKENIIVIYDDMSIDIGKLRVRSKGSAGGHNGI 114
>sp|B1YGP7|PTH_EXIS2 Peptidyl-tRNA hydrolase OS=Exiguobacterium sibiricum (strain DSM
17290 / JCM 13490 / 255-15) GN=pth PE=3 SV=1
Length = 185
Score = 122 bits (305), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 58/111 (52%), Positives = 70/111 (63%)
Query: 21 FVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQT 80
VGLGNPG KY TRHN+GF IDA A+ GI + KA FG G + V+L KP T
Sbjct: 4 IVGLGNPGAKYTNTRHNIGFLAIDALAKEHGIKLTESKFKAVFGTGMIKGERVVLVKPLT 63
Query: 81 YMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGC 131
YMNLSGE+ PL +YK+ + VLV +DD+ LP +RLR G GGHNG
Sbjct: 64 YMNLSGEAVRPLLDFYKIAVEDVLVIYDDLDLPLEKMRLRSKGSAGGHNGV 114
>sp|C1FNE6|PTH_CLOBJ Peptidyl-tRNA hydrolase OS=Clostridium botulinum (strain Kyoto /
Type A2) GN=pth PE=3 SV=1
Length = 189
Score = 121 bits (303), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 53/113 (46%), Positives = 74/113 (65%)
Query: 19 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKP 78
+L VGLGN G +YK TRHN+GF+++D AE I +N K ++G+G +G+ ++L KP
Sbjct: 2 YLVVGLGNIGKEYKKTRHNIGFDVVDIIAEKYNIEINRQKFKGSYGEGRIGNEKIILLKP 61
Query: 79 QTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGC 131
TYMNLSGES A +YK+ ++V +DDM + G LR+R G GGHNG
Sbjct: 62 STYMNLSGESVIEAANFYKIDKENIIVIYDDMSIDIGKLRVRGKGSAGGHNGI 114
>sp|A7GJD4|PTH_CLOBL Peptidyl-tRNA hydrolase OS=Clostridium botulinum (strain Langeland
/ NCTC 10281 / Type F) GN=pth PE=3 SV=1
Length = 189
Score = 121 bits (303), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 53/113 (46%), Positives = 74/113 (65%)
Query: 19 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKP 78
+L VGLGN G +YK TRHN+GF+++D AE I +N K ++G+G +G+ ++L KP
Sbjct: 2 YLVVGLGNIGKEYKKTRHNIGFDVVDIIAEKYNIEINRQKFKGSYGEGRIGNEKIILLKP 61
Query: 79 QTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGC 131
TYMNLSGES A +YK+ ++V +DDM + G LR+R G GGHNG
Sbjct: 62 STYMNLSGESVIEAANFYKIDKENIIVIYDDMSIDIGKLRVRGKGSAGGHNGI 114
>sp|B1IGZ7|PTH_CLOBK Peptidyl-tRNA hydrolase OS=Clostridium botulinum (strain Okra /
Type B1) GN=pth PE=3 SV=1
Length = 189
Score = 121 bits (303), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 53/113 (46%), Positives = 74/113 (65%)
Query: 19 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKP 78
+L VGLGN G +YK TRHN+GF+++D AE I +N K ++G+G +G+ ++L KP
Sbjct: 2 YLVVGLGNIGKEYKKTRHNIGFDVVDIIAEKYNIEINRQKFKGSYGEGRIGNEKIILLKP 61
Query: 79 QTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGC 131
TYMNLSGES A +YK+ ++V +DDM + G LR+R G GGHNG
Sbjct: 62 STYMNLSGESVIEAANFYKIDKENIIVIYDDMSIDIGKLRVRGKGSAGGHNGI 114
>sp|C3KW96|PTH_CLOB6 Peptidyl-tRNA hydrolase OS=Clostridium botulinum (strain 657 / Type
Ba4) GN=pth PE=3 SV=1
Length = 189
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 53/113 (46%), Positives = 74/113 (65%)
Query: 19 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKP 78
+L VGLGN G +YK TRHN+GF+++D AE I +N K ++G+G +G+ ++L KP
Sbjct: 2 YLVVGLGNIGKEYKQTRHNIGFDVVDIIAEKYNIEINRQKFKGSYGEGRIGNEKIILLKP 61
Query: 79 QTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGC 131
TYMNLSGES A +YK+ ++V +DDM + G LR+R G GGHNG
Sbjct: 62 STYMNLSGESVIEAANFYKIDKENIIVIYDDMSIDIGKLRVRGKGSAGGHNGI 114
>sp|A9KR32|PTH_CLOPH Peptidyl-tRNA hydrolase OS=Clostridium phytofermentans (strain ATCC
700394 / DSM 18823 / ISDg) GN=pth PE=3 SV=1
Length = 191
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 54/112 (48%), Positives = 74/112 (66%)
Query: 19 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKP 78
++ +GLGNP +Y+ TRHN+GF+ I A+ IS++T KA G+G +G V+LAKP
Sbjct: 2 YIIIGLGNPTREYEATRHNIGFDAITRLADDNNISLDTKKHKAICGKGMIGGEKVILAKP 61
Query: 79 QTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNG 130
QTYMNLSGES L +YK+ ++V +DD+ L G LR+R G GGHNG
Sbjct: 62 QTYMNLSGESVRELIDFYKVTKEEIIVIYDDISLDVGQLRIRTKGSAGGHNG 113
>sp|B1KTE2|PTH_CLOBM Peptidyl-tRNA hydrolase OS=Clostridium botulinum (strain Loch Maree
/ Type A3) GN=pth PE=3 SV=1
Length = 189
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 53/113 (46%), Positives = 74/113 (65%)
Query: 19 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKP 78
+L VGLGN G +YK TRHN+GF+++D AE I +N K ++G+G +G+ ++L KP
Sbjct: 2 YLVVGLGNIGKEYKKTRHNIGFDVVDIVAEKYNIEINRQKFKGSYGEGRIGNEKIILLKP 61
Query: 79 QTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGC 131
TYMNLSGES A +YK+ ++V +DDM + G LR+R G GGHNG
Sbjct: 62 STYMNLSGESVIEAANFYKIDKENIIVIYDDMSIDIGKLRVRGKGSAGGHNGI 114
>sp|A8F920|PTH_BACP2 Peptidyl-tRNA hydrolase OS=Bacillus pumilus (strain SAFR-032)
GN=pth PE=3 SV=1
Length = 188
Score = 120 bits (301), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 59/111 (53%), Positives = 69/111 (62%)
Query: 21 FVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQT 80
FVGLGNPG +Y+ TRHNVGF ID ++ I +N FG GFV VLL KP T
Sbjct: 4 FVGLGNPGKEYEKTRHNVGFMTIDELSKKWDIPLNQSKFHGQFGTGFVSGQKVLLVKPLT 63
Query: 81 YMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGC 131
YMNLSGE PL YY +PL + V +DD+ LP G +RLR G GGHNG
Sbjct: 64 YMNLSGECVRPLMDYYDIPLEHLKVIYDDLDLPTGRIRLRTKGSAGGHNGI 114
>sp|Q8XHJ8|PTH_CLOPE Peptidyl-tRNA hydrolase OS=Clostridium perfringens (strain 13 /
Type A) GN=pth PE=3 SV=1
Length = 188
Score = 119 bits (299), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 56/112 (50%), Positives = 73/112 (65%)
Query: 20 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQ 79
L VGLGNPG +Y+ TRHN+GF++ID A I +N K G+GF+ + V+L KP
Sbjct: 3 LIVGLGNPGKQYEQTRHNIGFDVIDYMANKYNIDVNREKFKGICGEGFIENKKVILLKPL 62
Query: 80 TYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGC 131
TYMNLSGES LA +YKL + ++V +DD+ L G LR+R G GGHNG
Sbjct: 63 TYMNLSGESIRELANFYKLEDDEIIVVYDDISLDIGRLRIREKGSAGGHNGI 114
>sp|Q0TMG7|PTH_CLOP1 Peptidyl-tRNA hydrolase OS=Clostridium perfringens (strain ATCC
13124 / NCTC 8237 / Type A) GN=pth PE=3 SV=1
Length = 188
Score = 119 bits (299), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 56/112 (50%), Positives = 73/112 (65%)
Query: 20 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQ 79
L VGLGNPG +Y+ TRHN+GF++ID A I +N K G+GF+ + V+L KP
Sbjct: 3 LIVGLGNPGKQYEQTRHNIGFDVIDYMANKYNIDVNREKFKGICGEGFIENKKVILLKPL 62
Query: 80 TYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGC 131
TYMNLSGES LA +YKL + ++V +DD+ L G LR+R G GGHNG
Sbjct: 63 TYMNLSGESIRELANFYKLEDDEIIVVYDDISLDIGRLRIREKGSAGGHNGI 114
>sp|Q9KGJ3|PTH_BACHD Peptidyl-tRNA hydrolase OS=Bacillus halodurans (strain ATCC BAA-125
/ DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=pth PE=3
SV=1
Length = 185
Score = 119 bits (297), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 54/112 (48%), Positives = 69/112 (61%)
Query: 20 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQ 79
L VGLGNPG KY GTRHNVGF+++DA A I + +G+G + + L KPQ
Sbjct: 3 LIVGLGNPGAKYDGTRHNVGFDVVDAVARRLNIEIKQSKANGLYGEGRIDGEKIFLLKPQ 62
Query: 80 TYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGC 131
T+MN SGES P YY + + +LV +DD+ LP G +RLR G GGHNG
Sbjct: 63 TFMNRSGESVRPFLEYYNMEVEDLLVIYDDLDLPVGKIRLRQKGSAGGHNGM 114
>sp|Q899I4|PTH_CLOTE Peptidyl-tRNA hydrolase OS=Clostridium tetani (strain Massachusetts
/ E88) GN=pth PE=3 SV=1
Length = 188
Score = 118 bits (296), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 53/113 (46%), Positives = 70/113 (61%)
Query: 19 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKP 78
+L VGLGNPG +Y+ TRHN+GFE +D + I + K FG G + + V+L KP
Sbjct: 2 FLLVGLGNPGKEYEKTRHNIGFEAVDKISYEYNIPIKRERFKGVFGDGRISNEKVILLKP 61
Query: 79 QTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGC 131
TYMNLSGES + YY +P+ V+V +DD+ L G LR+R G GGHNG
Sbjct: 62 TTYMNLSGESLREIIEYYNIPITNVIVIYDDVDLEVGRLRIRTKGSAGGHNGI 114
>sp|Q8R757|PTH_THETN Peptidyl-tRNA hydrolase OS=Thermoanaerobacter tengcongensis (strain
DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN=pth PE=3
SV=1
Length = 185
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 53/113 (46%), Positives = 74/113 (65%)
Query: 19 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKP 78
++ GLGNPG +Y+GTRHNVGF +IDA ++ GI ++ + K+ G+G V+L KP
Sbjct: 2 YIIAGLGNPGKEYEGTRHNVGFMVIDALSKKLGIEVSRLKFKSLMGEGHFKGEKVILLKP 61
Query: 79 QTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGC 131
QT+MNLSGE+ +YK+PL V+V +DD L G +R+R G GGHNG
Sbjct: 62 QTFMNLSGEALYDAVNFYKIPLENVIVVYDDKDLEVGKIRIRRKGSSGGHNGM 114
>sp|Q0SQ66|PTH_CLOPS Peptidyl-tRNA hydrolase OS=Clostridium perfringens (strain SM101 /
Type A) GN=pth PE=3 SV=1
Length = 188
Score = 117 bits (292), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 54/112 (48%), Positives = 71/112 (63%)
Query: 20 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQ 79
L VGLGNPG +Y+ TRHN+GF++ID A I +N K G+GF+ + V+L KP
Sbjct: 3 LIVGLGNPGKQYEKTRHNIGFDVIDYMANKYNIDVNREKFKGICGEGFIENKKVILLKPL 62
Query: 80 TYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGC 131
TYMNLSGES +YKL + ++V +DD+ L G LR+R G GGHNG
Sbjct: 63 TYMNLSGESIREFVNFYKLEDDEIIVVYDDISLDIGRLRIREKGSAGGHNGI 114
>sp|A8MK43|PTH_ALKOO Peptidyl-tRNA hydrolase OS=Alkaliphilus oremlandii (strain OhILAs)
GN=pth PE=3 SV=1
Length = 185
Score = 116 bits (291), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 53/111 (47%), Positives = 71/111 (63%)
Query: 20 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQ 79
+ VGLGNPG KY TRHN+GFE ID A+ I + + KA G+G +G VLL KPQ
Sbjct: 3 IIVGLGNPGKKYDATRHNIGFEAIDMLAKRNNIEVKKLKHKALCGEGTIGGNKVLLVKPQ 62
Query: 80 TYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNG 130
T+MNLSG+S + +YK+ ++V +DD+ +P G LR+R G G HNG
Sbjct: 63 TFMNLSGQSLLDIVQFYKVDPKNIVVLYDDIDIPVGTLRIREKGSSGTHNG 113
>sp|Q5L3U7|PTH_GEOKA Peptidyl-tRNA hydrolase OS=Geobacillus kaustophilus (strain HTA426)
GN=pth PE=3 SV=1
Length = 186
Score = 116 bits (291), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 57/112 (50%), Positives = 71/112 (63%)
Query: 20 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQ 79
LFVGLGNPG +Y+ TRHNVGF +ID A+ +S+ T + FG V V L KP
Sbjct: 3 LFVGLGNPGKEYEQTRHNVGFFVIDELAKRWNVSLKTAKFRGLFGTASVSGEKVALCKPL 62
Query: 80 TYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGC 131
TYMNLSGE PL YY + ++ V+V +DD+ LP G +RLR G GGHNG
Sbjct: 63 TYMNLSGECVRPLMDYYDIAIDDVIVIYDDLDLPPGKIRLRLKGSSGGHNGV 114
>sp|Q65PG8|PTH_BACLD Peptidyl-tRNA hydrolase OS=Bacillus licheniformis (strain DSM 13 /
ATCC 14580) GN=pth PE=3 SV=1
Length = 188
Score = 116 bits (290), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 55/112 (49%), Positives = 70/112 (62%)
Query: 20 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQ 79
+F GLGNPG Y+ TRHNVGF ID ++ I ++ +G GFV VLL KP
Sbjct: 3 VFAGLGNPGKTYENTRHNVGFMTIDELSKEWNIPLDKTKFNGQYGIGFVSGKKVLLVKPL 62
Query: 80 TYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGC 131
TYMNLSGE PL YY++P++ + V +DD+ LP G +RLR G GGHNG
Sbjct: 63 TYMNLSGECLRPLLDYYEIPVDNLKVIYDDLDLPTGRIRLRTKGSAGGHNGI 114
>sp|B8G3X3|PTH_CHLAD Peptidyl-tRNA hydrolase OS=Chloroflexus aggregans (strain MD-66 /
DSM 9485) GN=pth PE=3 SV=1
Length = 188
Score = 116 bits (290), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 52/114 (45%), Positives = 69/114 (60%), Gaps = 1/114 (0%)
Query: 19 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKP 78
WL VGLGNPG++Y TRHN+GF ++ AE G++ K+ +G + V L KP
Sbjct: 2 WLIVGLGNPGERYARTRHNIGFRSVETLAERHGLTFRNQRAKSEIAEGIIRGQRVALVKP 61
Query: 79 QTYMNLSGESTGPLAAYYKL-PLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGC 131
QTYMNLSG++ L +YK+ P +LV +DD+ LP LRLR G G HNG
Sbjct: 62 QTYMNLSGQAVAALRQWYKIDPARELLVIYDDLDLPFAKLRLRERGSAGTHNGM 115
>sp|A4J0Q6|PTH_DESRM Peptidyl-tRNA hydrolase OS=Desulfotomaculum reducens (strain MI-1)
GN=pth PE=3 SV=1
Length = 206
Score = 115 bits (289), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 57/111 (51%), Positives = 69/111 (62%)
Query: 20 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQ 79
L VGLGNPG +Y TRHN+GF +ID A+ +S KA Q +G V+LAKPQ
Sbjct: 3 LIVGLGNPGTEYAKTRHNIGFMVIDRLADESRVSTEKNQHKAQICQITIGSEKVILAKPQ 62
Query: 80 TYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNG 130
TYMNLSG+S L +YKL + + V DDM LP GVLR+R NG GG G
Sbjct: 63 TYMNLSGQSVVALMNWYKLSPDELFVITDDMDLPPGVLRIRKNGSAGGQRG 113
>sp|C0ZHD7|PTH_BREBN Peptidyl-tRNA hydrolase OS=Brevibacillus brevis (strain 47 / JCM
6285 / NBRC 100599) GN=pth PE=3 SV=1
Length = 189
Score = 115 bits (289), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 55/112 (49%), Positives = 71/112 (63%)
Query: 20 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQ 79
+ +GLGNPG KY+ TRHN GF ID ++ GI + +A G+G + VLL KPQ
Sbjct: 3 VIIGLGNPGKKYEDTRHNAGFMAIDKISDKWGIPVTQNKFRALVGEGRIEGEKVLLVKPQ 62
Query: 80 TYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGC 131
TYMNLSGES + +YKL + ++V +DD+ LP G LRLR G GGHNG
Sbjct: 63 TYMNLSGESVAEVLKFYKLIPDDLVVIYDDLDLPTGHLRLREKGSAGGHNGI 114
>sp|Q03SZ9|PTH_LACBA Peptidyl-tRNA hydrolase OS=Lactobacillus brevis (strain ATCC 367 /
JCM 1170) GN=pth PE=3 SV=1
Length = 185
Score = 115 bits (288), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 54/112 (48%), Positives = 71/112 (63%)
Query: 20 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQ 79
+ VGLGN G +Y TRHN GF ++DAFA+ GI++ T A FG G V VL+ KP
Sbjct: 3 MIVGLGNIGPQYDNTRHNTGFMVVDAFAQQHGIALTTRKMDARFGSGLVNGEKVLVVKPT 62
Query: 80 TYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGC 131
T+MN SG + P+ Y+K+ + V+V DDM LP G +RLR +G GGHNG
Sbjct: 63 TFMNESGRAVHPIMDYFKIDVADVMVVQDDMDLPLGRIRLRDHGSAGGHNGI 114
>sp|Q9F8Q3|PTH_CARHZ Peptidyl-tRNA hydrolase OS=Carboxydothermus hydrogenoformans
(strain Z-2901 / DSM 6008) GN=pth PE=3 SV=2
Length = 187
Score = 115 bits (288), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 53/112 (47%), Positives = 73/112 (65%)
Query: 19 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKP 78
++ GLGNPG +Y+ TRHN GF ++D A+ GI + K+ G+G + VLL KP
Sbjct: 2 FIIAGLGNPGQEYENTRHNAGFMVVDELAKKHGILITKRKFKSLVGEGEILGVKVLLLKP 61
Query: 79 QTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNG 130
QTYMNLSG + ++YKLPL+R++V +DD+ LP G +RLR G GGH G
Sbjct: 62 QTYMNLSGTAVQEAVSFYKLPLSRLVVVYDDLDLPLGKIRLRLKGSAGGHRG 113
>sp|C4KZU9|PTH_EXISA Peptidyl-tRNA hydrolase OS=Exiguobacterium sp. (strain ATCC
BAA-1283 / AT1b) GN=pth PE=3 SV=1
Length = 185
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 56/111 (50%), Positives = 70/111 (63%)
Query: 21 FVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQT 80
VGLGNPG K++ TRHNVGF ID AE GIS+N A G G + V+L KP T
Sbjct: 4 IVGLGNPGKKFEMTRHNVGFLAIDRLAEKHGISLNEAKFNALMGTGRINGERVVLVKPLT 63
Query: 81 YMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGC 131
YMNLSGE+ P+ YYK+ ++ +LV +DD+ + G LR R G GGHNG
Sbjct: 64 YMNLSGEAVRPILDYYKIEIDDLLVIYDDLDMVPGKLRFRPKGSAGGHNGI 114
>sp|A4IJC9|PTH_GEOTN Peptidyl-tRNA hydrolase OS=Geobacillus thermodenitrificans (strain
NG80-2) GN=pth PE=3 SV=1
Length = 186
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/111 (49%), Positives = 72/111 (64%)
Query: 20 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQ 79
LFVGLGNPG +Y+ TRHN+GF +ID A+ +S+ T + FG V V L KP
Sbjct: 3 LFVGLGNPGKEYEQTRHNIGFFVIDELAKRWNVSLKTAKFRGLFGTASVFGEKVALCKPL 62
Query: 80 TYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNG 130
TYMNLSGE PL +Y + ++ V++ +DD+ LP G +RLR GG GGHNG
Sbjct: 63 TYMNLSGECVCPLIDFYDIAVDDVIIIYDDLDLPPGKIRLRLKGGSGGHNG 113
>sp|Q5WAD6|PTH_BACSK Peptidyl-tRNA hydrolase OS=Bacillus clausii (strain KSM-K16) GN=pth
PE=3 SV=1
Length = 185
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 52/112 (46%), Positives = 73/112 (65%)
Query: 20 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQ 79
L VGLGNPG KY+ TRHN+GF++ID A+ + ++ KA +G+ +G V+L KP
Sbjct: 3 LVVGLGNPGKKYEHTRHNIGFDIIDRCAQKLDLPLDKQKFKAIYGEKRIGSEKVVLLKPL 62
Query: 80 TYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGC 131
TYMNLSGE+ P Y+ + + ++V +DD+ LP G +RLR G GGHNG
Sbjct: 63 TYMNLSGEAVRPFMDYFNISNDELVVIYDDLDLPVGKIRLRKKGSAGGHNGI 114
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.143 0.473
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,951,153
Number of Sequences: 539616
Number of extensions: 2365917
Number of successful extensions: 6431
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 5007
Number of HSP's gapped (non-prelim): 858
length of query: 136
length of database: 191,569,459
effective HSP length: 101
effective length of query: 35
effective length of database: 137,068,243
effective search space: 4797388505
effective search space used: 4797388505
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)