RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 032666
         (136 letters)



>d1ryba_ c.56.3.1 (A:) Chloroplast group II intron splicing factor
           Crs2 {Maize (Zea mays) [TaxId: 4577]}
          Length = 191

 Score =  117 bits (294), Expect = 7e-35
 Identities = 70/113 (61%), Positives = 87/113 (76%)

Query: 18  PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAK 77
           PWL  GLGNPG+KY GTRHNVGFEM+D  A  +GI+MNT+  K+  G G +G+ PVL+ K
Sbjct: 3   PWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVVK 62

Query: 78  PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNG 130
           PQ+YMN SGE+ GPLAAYY++PL  +L+ +DD  LP GVLRL+  GGHG HNG
Sbjct: 63  PQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNG 115


>d2ptha_ c.56.3.1 (A:) Peptidyl-tRNA hydrolase {Escherichia coli
           [TaxId: 562]}
          Length = 193

 Score =  111 bits (279), Expect = 1e-32
 Identities = 43/112 (38%), Positives = 63/112 (56%), Gaps = 1/112 (0%)

Query: 20  LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVH-CKATFGQGFVGDAPVLLAKP 78
           L VGL NPG +Y  TRHN G   +D  AE     +           +  +G   V L  P
Sbjct: 4   LIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLREEAKFFGYTSRVTLGGEDVRLLVP 63

Query: 79  QTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNG 130
            T+MNLSG++   +A+++++  + +LV HD++ LP GV + +  GGHGGHNG
Sbjct: 64  TTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGVAKFKLGGGHGGHNG 115


>d1i5ea_ c.61.1.1 (A:) Uracil PRTase, Upp {Bacillus caldolyticus
           [TaxId: 1394]}
          Length = 208

 Score = 24.9 bits (54), Expect = 3.2
 Identities = 7/13 (53%), Positives = 10/13 (76%)

Query: 23  GLGNPGDKYKGTR 35
           GLG+ GD+  GT+
Sbjct: 196 GLGDAGDRLFGTK 208


>d2ddha3 e.6.1.2 (A:1-267) Peroxisomal acyl-CoA oxidase-II, domains
           1 and 2 {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 267

 Score = 24.7 bits (53), Expect = 4.8
 Identities = 13/112 (11%), Positives = 32/112 (28%)

Query: 19  WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKP 78
              +       + +        E+   +A+++      +    T           +L  P
Sbjct: 109 PTLLHQATAEQQERFFMPAWNLEITGTYAQTEMGHGTHLRGLETTATYDPKTQEFILNSP 168

Query: 79  QTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNG 130
                          + + + L +++   +  GL   V+ +R  G H    G
Sbjct: 169 TVTSIKWWPGGLGKTSNHAIVLAQLITQGECYGLHAFVVPIREIGTHKPLPG 220


>d1v9sa1 c.61.1.1 (A:1-208) Uracil PRTase, Upp {Thermus thermophilus
           [TaxId: 274]}
          Length = 208

 Score = 24.2 bits (52), Expect = 5.9
 Identities = 7/13 (53%), Positives = 10/13 (76%)

Query: 23  GLGNPGDKYKGTR 35
           GLG+ GD+  GT+
Sbjct: 196 GLGDAGDRIYGTK 208


>d1o5oa_ c.61.1.1 (A:) Uracil PRTase, Upp {Thermotoga maritima
           [TaxId: 2336]}
          Length = 210

 Score = 24.2 bits (52), Expect = 6.6
 Identities = 6/13 (46%), Positives = 9/13 (69%)

Query: 23  GLGNPGDKYKGTR 35
           GLG+ GD+   T+
Sbjct: 198 GLGDAGDRLFRTK 210


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.143    0.473 

Gapped
Lambda     K      H
   0.267   0.0560    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 537,708
Number of extensions: 21851
Number of successful extensions: 65
Number of sequences better than 10.0: 1
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 9
Length of query: 136
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 60
Effective length of database: 1,364,116
Effective search space: 81846960
Effective search space used: 81846960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (22.6 bits)