BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032667
(136 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GQ8|A Chain A, Pectin Methylesterase From Carrot
Length = 319
Score = 239 bits (609), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 112/136 (82%), Positives = 122/136 (89%)
Query: 1 MHETQGRADPNQNTGIVIQKSRIGATSDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDV 60
M QGR DPNQNTGIVIQKSRIGATSDL+PVQ SFPTYLGRPWKEYSRTV+MQSSIT+V
Sbjct: 184 MVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSITNV 243
Query: 61 IHPAGWHEWDGNFALNTLFYGEHQNAGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIA 120
I+PAGW WDGNFAL+TL+YGE+QN GAGA TSGRV WKGF+VITS+TEAQ FTPGSFIA
Sbjct: 244 INPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIA 303
Query: 121 GSSWLGSTGFPFSLGL 136
G SWL +T FPFSLGL
Sbjct: 304 GGSWLKATTFPFSLGL 319
>pdb|1XG2|A Chain A, Crystal Structure Of The Complex Between Pectin
Methylesterase And Its Inhibitor Protein
Length = 317
Score = 169 bits (428), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 82/136 (60%), Positives = 94/136 (69%)
Query: 1 MHETQGRADPNQNTGIVIQKSRIGATSDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDV 60
M QGR DPNQ TG IQ I A+SDL+PV FPTYLGRPWKEYSRTV+M+S + +
Sbjct: 180 MVTAQGRTDPNQATGTSIQFCNIIASSDLEPVLKEFPTYLGRPWKEYSRTVVMESYLGGL 239
Query: 61 IHPAGWHEWDGNFALNTLFYGEHQNAGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIA 120
I+PAGW EWDG+FAL TL+YGE N G GAGTS RVKW G+ VIT +A FT I
Sbjct: 240 INPAGWAEWDGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPAKAMPFTVAKLIQ 299
Query: 121 GSSWLGSTGFPFSLGL 136
G SWL STG + GL
Sbjct: 300 GGSWLRSTGVAYVDGL 315
>pdb|1QJV|A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi
pdb|1QJV|B Chain B, Pectin Methylesterase Pema From Erwinia Chrysanthemi
Length = 342
Score = 32.0 bits (71), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 54/124 (43%), Gaps = 34/124 (27%)
Query: 11 NQNTGIVIQKSRIGATSDLKPVQGSFPTY-LGRPW--------------KEYSRTVIMQS 55
NQ G+VI SR+ SD P + +Y LGRPW +TV + +
Sbjct: 215 NQKYGLVITNSRVIRESDSVPAK----SYGLGRPWHPTTTFSDGRYADPNAIGQTVFLNT 270
Query: 56 SITDVIHPAGWHEWDGNFAL-NTLFYG-------EHQNAGAGAGTSGRVKWKGFRVITSA 107
S+ + H GW + G NT+++ E+++ GAGA S K R +T A
Sbjct: 271 SMDN--HIYGWDKMSGKDKNGNTIWFNPEDSRFFEYKSYGAGAAVS-----KDRRQLTDA 323
Query: 108 TEAQ 111
A+
Sbjct: 324 QAAE 327
>pdb|2NTB|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide V
pdb|2NTB|B Chain B, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide V
pdb|2NTP|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide Vi
pdb|2NTP|B Chain B, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide Vi
pdb|2NTQ|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide Vii
pdb|2NTQ|B Chain B, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide Vii
Length = 342
Score = 31.2 bits (69), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 54/124 (43%), Gaps = 34/124 (27%)
Query: 11 NQNTGIVIQKSRIGATSDLKPVQGSFPTY-LGRPW--------------KEYSRTVIMQS 55
NQ G+VI SR+ SD P + +Y LGRPW +TV + +
Sbjct: 215 NQKYGLVITNSRVIRESDSVPAK----SYGLGRPWHPTTTFSDGRYADPNAIGQTVFLNT 270
Query: 56 SITDVIHPAGWHEWDGNFAL-NTLFYG-------EHQNAGAGAGTSGRVKWKGFRVITSA 107
S+ + H GW + G NT+++ E+++ GAGA S K R +T A
Sbjct: 271 SMDN--HIYGWDKMSGKDKNGNTIWFNPEDSRFFEYKSYGAGATVS-----KDRRQLTDA 323
Query: 108 TEAQ 111
A+
Sbjct: 324 QAAE 327
>pdb|2NSP|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide I
pdb|2NSP|B Chain B, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide I
pdb|2NST|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Ii
pdb|2NST|B Chain B, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Ii
pdb|2NT6|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Iii
pdb|2NT6|B Chain B, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Iii
pdb|2NT9|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Iv
pdb|2NT9|B Chain B, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Iv
Length = 342
Score = 31.2 bits (69), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 54/124 (43%), Gaps = 34/124 (27%)
Query: 11 NQNTGIVIQKSRIGATSDLKPVQGSFPTY-LGRPW--------------KEYSRTVIMQS 55
NQ G+VI SR+ SD P + +Y LGRPW +TV + +
Sbjct: 215 NQKYGLVITNSRVIRESDSVPAK----SYGLGRPWHPTTTFSDGRYADPNAIGQTVFLNT 270
Query: 56 SITDVIHPAGWHEWDGNFAL-NTLFYG-------EHQNAGAGAGTSGRVKWKGFRVITSA 107
S+ + H GW + G NT+++ E+++ GAGA S K R +T A
Sbjct: 271 SMDN--HIYGWDKMSGKDKNGNTIWFNPEDSRFFEYKSYGAGATVS-----KDRRQLTDA 323
Query: 108 TEAQ 111
A+
Sbjct: 324 QAAE 327
>pdb|4GI6|A Chain A, Crystal Structure Of The Mutb F164l Mutant In Complex With
Glucose
pdb|4GI6|B Chain B, Crystal Structure Of The Mutb F164l Mutant In Complex With
Glucose
pdb|4GI8|A Chain A, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With The Substrate Sucrose
pdb|4GI8|B Chain B, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With The Substrate Sucrose
pdb|4GI9|A Chain A, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Trehalulose
pdb|4GI9|B Chain B, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Trehalulose
pdb|4GIA|A Chain A, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Isomaltulose
pdb|4GIA|B Chain B, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Isomaltulose
Length = 557
Score = 29.3 bits (64), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Query: 71 GNFALNTLFYGEHQNAGAGAGT-SGRVKWK--GFRVITSATEAQAFTPGSFIAGSSWLGS 127
G + NT F G H N A + R +W+ + + + T Q TP FI LG
Sbjct: 314 GEYGWNTFFLGNHDNPRAVSHFGDDRPQWREASAKALATVTLTQRGTP--FIFQGDELGM 371
Query: 128 TGFPFS 133
T +PF
Sbjct: 372 TNYPFK 377
>pdb|2PWG|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Castanospermine
pdb|2PWG|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Castanospermine
pdb|2PWH|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45
pdb|2PWH|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45
Length = 556
Score = 28.9 bits (63), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Query: 71 GNFALNTLFYGEHQNAGAGAGT-SGRVKWK--GFRVITSATEAQAFTPGSFIAGSSWLGS 127
G + NT F G H N A + R +W+ + + + T Q TP FI LG
Sbjct: 313 GEYGWNTFFLGNHDNPRAVSHFGDDRPQWREASAKALATVTLTQRGTP--FIFQGDELGM 370
Query: 128 TGFPFS 133
T +PF
Sbjct: 371 TNYPFK 376
>pdb|2PWE|A Chain A, Crystal Structure Of The Mutb E254q Mutant In Complex With
The Substrate Sucrose
pdb|2PWE|B Chain B, Crystal Structure Of The Mutb E254q Mutant In Complex With
The Substrate Sucrose
Length = 556
Score = 28.9 bits (63), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Query: 71 GNFALNTLFYGEHQNAGAGAGT-SGRVKWK--GFRVITSATEAQAFTPGSFIAGSSWLGS 127
G + NT F G H N A + R +W+ + + + T Q TP FI LG
Sbjct: 313 GEYGWNTFFLGNHDNPRAVSHFGDDRPQWREASAKALATVTLTQRGTP--FIFQGDELGM 370
Query: 128 TGFPFS 133
T +PF
Sbjct: 371 TNYPFK 376
>pdb|1ZJA|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Triclinic Form)
pdb|1ZJA|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Triclinic Form)
pdb|1ZJB|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Monoclinic Form)
pdb|1ZJB|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Monoclinic Form)
pdb|2PWD|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Deoxynojirmycin
pdb|2PWD|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Deoxynojirmycin
Length = 557
Score = 28.9 bits (63), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Query: 71 GNFALNTLFYGEHQNAGAGAGT-SGRVKWK--GFRVITSATEAQAFTPGSFIAGSSWLGS 127
G + NT F G H N A + R +W+ + + + T Q TP FI LG
Sbjct: 314 GEYGWNTFFLGNHDNPRAVSHFGDDRPQWREASAKALATVTLTQRGTP--FIFQGDELGM 371
Query: 128 TGFPFS 133
T +PF
Sbjct: 372 TNYPFK 377
>pdb|4H2C|A Chain A, Trehalulose Synthase Mutb R284c Mutant
Length = 557
Score = 28.9 bits (63), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Query: 71 GNFALNTLFYGEHQNAGAGAGT-SGRVKWK--GFRVITSATEAQAFTPGSFIAGSSWLGS 127
G + NT F G H N A + R +W+ + + + T Q TP FI LG
Sbjct: 314 GEYGWNTFFLGNHDNPRAVSHFGDDRPQWREASAKALATVTLTQRGTP--FIFQGDELGM 371
Query: 128 TGFPFS 133
T +PF
Sbjct: 372 TNYPFK 377
>pdb|2PWF|A Chain A, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
pdb|2PWF|B Chain B, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
pdb|2PWF|C Chain C, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
pdb|2PWF|D Chain D, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
Length = 556
Score = 28.9 bits (63), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Query: 71 GNFALNTLFYGEHQNAGAGAGT-SGRVKWK--GFRVITSATEAQAFTPGSFIAGSSWLGS 127
G + NT F G H N A + R +W+ + + + T Q TP FI LG
Sbjct: 313 GEYGWNTFFLGNHDNPRAVSHFGDDRPQWREASAKALATVTLTQRGTP--FIFQGDELGM 370
Query: 128 TGFPFS 133
T +PF
Sbjct: 371 TNYPFK 376
>pdb|4GIN|A Chain A, Crystal Structure Of The Mutb R284c Mutant From Crystals
Soaked With The Inhibitor Deoxynojirimycin
Length = 584
Score = 28.9 bits (63), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Query: 71 GNFALNTLFYGEHQNAGAGAGT-SGRVKWK--GFRVITSATEAQAFTPGSFIAGSSWLGS 127
G + NT F G H N A + R +W+ + + + T Q TP FI LG
Sbjct: 341 GEYGWNTFFLGNHDNPRAVSHFGDDRPQWREASAKALATVTLTQRGTP--FIFQGDELGM 398
Query: 128 TGFPFS 133
T +PF
Sbjct: 399 TNYPFK 404
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,576,413
Number of Sequences: 62578
Number of extensions: 187325
Number of successful extensions: 338
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 335
Number of HSP's gapped (non-prelim): 16
length of query: 136
length of database: 14,973,337
effective HSP length: 88
effective length of query: 48
effective length of database: 9,466,473
effective search space: 454390704
effective search space used: 454390704
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 46 (22.3 bits)