Query 032668
Match_columns 136
No_of_seqs 141 out of 617
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 06:38:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032668.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032668hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1tzy_C Histone H3; histone-fol 100.0 3.7E-63 1.3E-67 370.4 6.2 136 1-136 1-136 (136)
2 2yfv_A Histone H3-like centrom 100.0 4.4E-51 1.5E-55 291.5 5.2 96 37-132 2-100 (100)
3 3nqu_A Histone H3-like centrom 100.0 1.2E-50 4.1E-55 303.7 6.2 110 24-135 24-136 (140)
4 3r45_A Histone H3-like centrom 100.0 8.3E-51 2.8E-55 308.6 5.1 112 22-135 38-152 (156)
5 2hue_B Histone H3; mini beta s 100.0 5.6E-40 1.9E-44 224.4 6.0 77 60-136 1-77 (77)
6 3nqj_A Histone H3-like centrom 100.0 9.8E-40 3.4E-44 225.5 5.9 75 61-135 2-78 (82)
7 2l5a_A Histone H3-like centrom 100.0 8.3E-37 2.8E-41 244.6 6.5 76 60-135 9-87 (235)
8 2ly8_A Budding yeast chaperone 99.9 3.2E-28 1.1E-32 178.5 6.7 73 62-134 1-114 (121)
9 1b67_A Protein (histone HMFA); 99.8 1.8E-21 6E-26 128.4 4.1 64 63-131 3-66 (68)
10 1ku5_A HPHA, archaeal histon; 99.7 1E-17 3.5E-22 111.2 4.4 64 62-130 6-69 (70)
11 1n1j_A NF-YB; histone-like PAI 99.6 1.7E-15 5.8E-20 105.3 4.6 73 57-132 3-75 (93)
12 1tzy_B Histone H2B; histone-fo 99.2 3.7E-11 1.3E-15 88.3 6.4 69 64-132 34-102 (126)
13 2nqb_D Histone H2B; nucleosome 99.2 3.8E-11 1.3E-15 87.9 6.5 69 64-132 31-99 (123)
14 1tzy_D Histone H4-VI; histone- 98.8 2.2E-09 7.5E-14 75.9 4.5 72 58-134 25-96 (103)
15 2yfw_B Histone H4, H4; cell cy 98.8 2E-09 6.9E-14 76.1 4.1 72 58-134 25-96 (103)
16 1id3_B Histone H4; nucleosome 98.8 3.9E-09 1.3E-13 74.7 4.7 70 60-134 26-95 (102)
17 3b0c_W CENP-W, centromere prot 98.8 4.8E-09 1.6E-13 70.3 4.0 66 62-131 4-69 (76)
18 2hue_C Histone H4; mini beta s 98.7 5.1E-09 1.8E-13 71.5 2.9 69 61-134 9-77 (84)
19 1f1e_A Histone fold protein; a 98.7 1.4E-08 4.9E-13 76.8 4.6 69 58-131 78-146 (154)
20 2jss_A Chimera of histone H2B. 98.7 3.5E-08 1.2E-12 76.5 6.9 69 64-132 1-69 (192)
21 3b0c_T CENP-T, centromere prot 98.7 2.9E-08 9.8E-13 71.2 5.9 70 60-134 5-74 (111)
22 3v9r_A MHF1, uncharacterized p 98.6 7.9E-08 2.7E-12 66.9 5.1 66 65-130 11-78 (90)
23 1taf_A TFIID TBP associated fa 98.5 1.7E-07 5.8E-12 62.1 6.3 62 70-132 5-66 (68)
24 2r10_A Chromatin structure-rem 98.5 1.3E-08 4.5E-13 85.2 0.0 50 3-52 3-52 (361)
25 3b0b_B CENP-S, centromere prot 98.5 1.3E-07 4.4E-12 67.7 4.4 66 65-130 18-85 (107)
26 4dra_A Centromere protein S; D 98.4 1.8E-07 6.3E-12 67.5 4.7 65 66-130 27-93 (113)
27 1f1e_A Histone fold protein; a 98.4 1.9E-07 6.3E-12 70.6 4.8 67 63-133 5-71 (154)
28 3vh5_A CENP-S; histone fold, c 98.4 2.3E-07 7.9E-12 69.2 4.9 66 65-130 18-85 (140)
29 1taf_B TFIID TBP associated fa 98.3 4.6E-07 1.6E-11 60.3 4.5 64 63-131 7-70 (70)
30 2byk_B Chrac-14; nucleosome sl 98.3 1E-06 3.6E-11 64.5 5.8 71 60-133 7-77 (128)
31 1jfi_B DR1 protein, transcript 98.3 1.1E-06 3.7E-11 67.9 5.4 73 57-133 10-82 (179)
32 4g92_C HAPE; transcription fac 98.2 1.9E-06 6.5E-11 62.2 5.2 70 60-130 36-105 (119)
33 1n1j_B NF-YC; histone-like PAI 98.2 2.3E-06 7.7E-11 59.6 4.8 80 49-130 4-83 (97)
34 1h3o_B Transcription initiatio 97.8 5.9E-05 2E-09 50.8 6.1 65 62-130 5-69 (76)
35 1jfi_A Transcription regulator 97.7 1.9E-05 6.4E-10 55.1 3.4 65 65-130 11-75 (98)
36 2byk_A Chrac-16; nucleosome sl 97.4 0.00013 4.5E-09 54.0 4.4 66 64-130 18-84 (140)
37 2x4w_B Histone H3.2; transcrip 97.2 0.00011 3.8E-09 39.1 1.6 23 26-48 4-26 (26)
38 2l5a_A Histone H3-like centrom 97.2 0.00029 9.8E-09 56.4 4.2 54 81-134 175-228 (235)
39 2nqb_C Histone H2A; nucleosome 97.2 0.00057 1.9E-08 49.6 5.4 67 60-130 21-87 (123)
40 2f8n_G Core histone macro-H2A. 97.2 0.00064 2.2E-08 49.1 5.4 67 60-130 20-86 (120)
41 1tzy_A Histone H2A-IV; histone 97.1 0.00069 2.4E-08 49.5 5.4 67 60-130 23-89 (129)
42 1f66_C Histone H2A.Z; nucleoso 97.0 0.00097 3.3E-08 48.7 5.3 68 60-130 25-92 (128)
43 1id3_C Histone H2A.1; nucleoso 97.0 0.00069 2.4E-08 49.7 4.5 67 60-130 23-89 (131)
44 2f8n_K Histone H2A type 1; nuc 97.0 0.00087 3E-08 50.3 4.9 67 60-130 42-108 (149)
45 2jss_A Chimera of histone H2B. 96.9 0.00071 2.4E-08 52.2 3.7 68 60-130 103-170 (192)
46 3a1b_A DNA (cytosine-5)-methyl 92.1 0.03 1E-06 42.3 0.2 21 2-22 1-21 (159)
47 3avr_B Histone H3; cupin super 92.0 0.071 2.4E-06 28.0 1.6 25 18-42 1-25 (26)
48 4dra_E Centromere protein X; D 67.9 14 0.00049 24.7 5.7 57 70-126 16-74 (84)
49 1r4v_A Hypothetical protein AQ 67.1 6.8 0.00023 29.7 4.3 71 55-130 17-89 (171)
50 3b0b_C CENP-X, centromere prot 63.1 19 0.00067 23.8 5.5 57 70-126 12-70 (81)
51 1wwi_A Hypothetical protein TT 53.3 11 0.00037 27.9 3.2 63 63-130 3-65 (148)
52 3uk6_A RUVB-like 2; hexameric 50.4 39 0.0013 26.1 6.3 51 81-131 275-329 (368)
53 1g8p_A Magnesium-chelatase 38 39.9 59 0.002 24.7 5.7 51 81-131 264-321 (350)
54 3k1j_A LON protease, ATP-depen 37.6 87 0.003 26.8 7.0 50 82-131 312-374 (604)
55 3qb5_K Translin-associated pro 36.5 47 0.0016 26.5 4.8 25 82-106 113-137 (290)
56 3ksy_A SOS-1, SON of sevenless 31.5 82 0.0028 29.3 6.1 48 83-130 120-167 (1049)
57 2ly8_A Budding yeast chaperone 29.1 33 0.0011 24.4 2.4 31 81-111 61-91 (121)
58 1h3o_A Transcription initiatio 29.0 45 0.0015 21.8 2.9 52 63-115 3-54 (75)
59 3kw6_A 26S protease regulatory 26.7 38 0.0013 20.9 2.2 31 100-130 41-71 (78)
60 1kn1_B Allophycocyanin; helix- 23.2 90 0.0031 22.7 4.0 58 46-103 79-143 (161)
61 1njg_A DNA polymerase III subu 22.6 62 0.0021 22.3 2.9 47 81-128 201-247 (250)
62 1kn1_A Allophycocyanin; helix- 22.2 73 0.0025 23.2 3.3 58 46-103 78-142 (160)
63 2vml_A Phycocyanin alpha chain 22.2 85 0.0029 22.8 3.6 63 46-110 80-149 (162)
64 3axj_B TRAX, translin associat 20.8 1.9E+02 0.0065 23.0 5.8 23 83-105 111-133 (298)
65 2chg_A Replication factor C sm 20.3 1.3E+02 0.0044 20.4 4.2 47 82-130 178-224 (226)
No 1
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=100.00 E-value=3.7e-63 Score=370.38 Aligned_cols=136 Identities=96% Similarity=1.331 Sum_probs=93.7
Q ss_pred CCcccccccccCCCCCCCchhhhhhcccCCCCCCCCCCCCcCCCCchhhHHHHhhhhchhhhhhccchhHHHHHHHhhhc
Q 032668 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFK 80 (136)
Q Consensus 1 MARtK~~a~ks~g~kaprk~~a~k~~~k~~p~~~~~~~~~r~~pg~~al~EIr~~Qkst~lli~k~pF~rlVreI~~~~~ 80 (136)
||||||+|++++||++|+|++++++++++.|..+++++++||+||+++|+|||+||+||+|||||+||+||||||+++|.
T Consensus 1 MARtk~tarkstggkaprk~l~~k~a~k~~p~~~~~kk~~r~rpgt~alrEIr~yQkst~lLIpk~PF~RLVREI~~~~~ 80 (136)
T 1tzy_C 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK 80 (136)
T ss_dssp -----------------------------------------CCHHHHHHHHHHHHHHCCSCCSCHHHHHHHHHHHHHHHC
T ss_pred CCCCccccccCCCCCCCCccccccccccCCCCCCCCCCCCCCCCchhHHHHHHHhhcchhhhhccchHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHHHHHHhhhhhhhhhHhhhhcCccccCcccHHHHHHHhcccC
Q 032668 81 TDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMPKDIQLARRIRGERA 136 (136)
Q Consensus 81 ~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~kDiqLa~rirg~~~ 136 (136)
+++|||++||+|||||+|+|||+||||+|+||+|+||||||++|||||++|||+++
T Consensus 81 ~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~rirg~~~ 136 (136)
T 1tzy_C 81 TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136 (136)
T ss_dssp TTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHTCCC
T ss_pred hhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHHHHHHhCcCC
Confidence 99999999999999999999999999999999999999999999999999999864
No 2
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=100.00 E-value=4.4e-51 Score=291.48 Aligned_cols=96 Identities=64% Similarity=1.002 Sum_probs=67.1
Q ss_pred CCCCcCCCCchhhHHHHhhhhchhhhhhccchhHHHHHHHhhhcc---cccccHHHHHHHHHHHHHHhhhhhhhhhHhhh
Q 032668 37 KKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKT---DLRFQSHAVLALQEAAEAYLVGLFEDTNLCAI 113 (136)
Q Consensus 37 ~~~~r~~pg~~al~EIr~~Qkst~lli~k~pF~rlVreI~~~~~~---~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~ 113 (136)
++++||+||+++|+|||+||+||++||||+||+||||||.+++.+ ++|||++|++|||||+|+|||+||||+|+||+
T Consensus 2 ~~~~r~rpgt~alrEIr~yQkst~llIpk~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~ 81 (100)
T 2yfv_A 2 ARGTRYKPTDLALAEIRKYQRSTDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLAL 81 (100)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcchHHHHHHhhcccchhhhccccHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999999999999999976 89999999999999999999999999999999
Q ss_pred hcCccccCcccHHHHHHHh
Q 032668 114 HARRVTIMPKDIQLARRIR 132 (136)
Q Consensus 114 HakRvTi~~kDiqLa~rir 132 (136)
||||||||++|||||++||
T Consensus 82 HAkRvTi~~kDiqLa~rir 100 (100)
T 2yfv_A 82 HAKRITIMRKDMQLARRIR 100 (100)
T ss_dssp HTTCSEECHHHHHHHHHCC
T ss_pred HcCCccCCHHHHHHHHHhC
Confidence 9999999999999999996
No 3
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=100.00 E-value=1.2e-50 Score=303.72 Aligned_cols=110 Identities=57% Similarity=0.856 Sum_probs=72.9
Q ss_pred hhcccCCCCCCCCCCC-CcCCCCchhhHHHHhhhhchhhhhhccchhHHHHHHHhhhc--ccccccHHHHHHHHHHHHHH
Q 032668 24 KAARKSAPTTGGVKKP-HRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFK--TDLRFQSHAVLALQEAAEAY 100 (136)
Q Consensus 24 k~~~k~~p~~~~~~~~-~r~~pg~~al~EIr~~Qkst~lli~k~pF~rlVreI~~~~~--~~~r~~~~Al~aLQeaaE~~ 100 (136)
+++++++|..|+++++ ++|+||+ |+|||+||+||+|||||+||+||||||.++|. .++|||++||+|||||+|+|
T Consensus 24 ~aa~~~~~~~g~~~~~~~r~rpg~--LrEIR~yQkst~LLIpKlPF~RLVREI~~~~~~~~~~Rfq~~Al~ALQEAaEay 101 (140)
T 3nqu_A 24 PGPSRRGPSLGASSHQHSRRRQGW--LKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAF 101 (140)
T ss_dssp -------------------------------------CCCSCTTHHHHHHHHHHHHHHTTCCCEECHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCcc--HHHHHHhccccccccccccHHHHHHHHHHHhcccccceecHHHHHHHHHHHHHH
Confidence 5678888888877655 4899998 99999999999999999999999999999997 58999999999999999999
Q ss_pred hhhhhhhhhHhhhhcCccccCcccHHHHHHHhccc
Q 032668 101 LVGLFEDTNLCAIHARRVTIMPKDIQLARRIRGER 135 (136)
Q Consensus 101 Lv~lfe~a~l~a~HakRvTi~~kDiqLa~rirg~~ 135 (136)
||+||||+|+||+||||||||++|||||++|||+.
T Consensus 102 Lv~LFEdanlcAiHAkRVTIm~kDiqLArrirg~~ 136 (140)
T 3nqu_A 102 LVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGLE 136 (140)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHcCcccccHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999975
No 4
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=100.00 E-value=8.3e-51 Score=308.64 Aligned_cols=112 Identities=57% Similarity=0.849 Sum_probs=74.1
Q ss_pred hhhhcccCCCCCCCCCCC-CcCCCCchhhHHHHhhhhchhhhhhccchhHHHHHHHhhhc--ccccccHHHHHHHHHHHH
Q 032668 22 ATKAARKSAPTTGGVKKP-HRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFK--TDLRFQSHAVLALQEAAE 98 (136)
Q Consensus 22 a~k~~~k~~p~~~~~~~~-~r~~pg~~al~EIr~~Qkst~lli~k~pF~rlVreI~~~~~--~~~r~~~~Al~aLQeaaE 98 (136)
+++++++++|..|+++++ +||+||+ |+|||+||+||+|||||+||+||||||+++|. .++|||++||+|||||+|
T Consensus 38 ~~~aa~ksap~~g~~~~~~~r~rpg~--LrEIR~yQkSteLLIpKlPF~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaE 115 (156)
T 3r45_A 38 PTPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAE 115 (156)
T ss_dssp ---------------------------------------CCCSCHHHHHHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCch--HHHHHHhccccccccccccHHHHHHHHHHHhccCccceecHHHHHHHHHHHH
Confidence 566788899988888766 7899998 99999999999999999999999999999997 589999999999999999
Q ss_pred HHhhhhhhhhhHhhhhcCccccCcccHHHHHHHhccc
Q 032668 99 AYLVGLFEDTNLCAIHARRVTIMPKDIQLARRIRGER 135 (136)
Q Consensus 99 ~~Lv~lfe~a~l~a~HakRvTi~~kDiqLa~rirg~~ 135 (136)
+|||+||||+|+||+||||||||++|||||++|||+.
T Consensus 116 ayLV~LFEdanLcAiHAkRVTIm~kDIqLArrIrg~~ 152 (156)
T 3r45_A 116 AFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGLE 152 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTCSEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCcccccHHHHHHHHHHcccc
Confidence 9999999999999999999999999999999999974
No 5
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=100.00 E-value=5.6e-40 Score=224.41 Aligned_cols=77 Identities=91% Similarity=1.271 Sum_probs=74.0
Q ss_pred hhhhhccchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHhhhhhhhhhHhhhhcCccccCcccHHHHHHHhcccC
Q 032668 60 ELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMPKDIQLARRIRGERA 136 (136)
Q Consensus 60 ~lli~k~pF~rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~kDiqLa~rirg~~~ 136 (136)
++||||+||+||||||++++.+++|||++|+.|||||+|+|||+||||+|+||+|+||||||++|||||++|||+++
T Consensus 1 ~lli~k~PF~RLVRei~~~~~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~rirg~~~ 77 (77)
T 2hue_B 1 MALIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 77 (77)
T ss_dssp -CCSCHHHHHHHHHHHHHTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTCC-
T ss_pred CCccccchHHHHHHHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHHHhCcCC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999864
No 6
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=100.00 E-value=9.8e-40 Score=225.52 Aligned_cols=75 Identities=65% Similarity=0.984 Sum_probs=71.6
Q ss_pred hhhhccchhHHHHHHHhhhc--ccccccHHHHHHHHHHHHHHhhhhhhhhhHhhhhcCccccCcccHHHHHHHhccc
Q 032668 61 LLIRKLPFQRLVREIAQDFK--TDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMPKDIQLARRIRGER 135 (136)
Q Consensus 61 lli~k~pF~rlVreI~~~~~--~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~kDiqLa~rirg~~ 135 (136)
+||||+||+||||||.+++. .++|||++|+.|||||+|+|||+||||+|+||+|||||||||+|||||+||||++
T Consensus 2 lLI~klPF~RLVREI~~~~~~~~~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~rirg~~ 78 (82)
T 3nqj_A 2 LLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGLE 78 (82)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC--
T ss_pred CCcccccHHHHHHHHHHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHHHcccc
Confidence 78999999999999999997 6899999999999999999999999999999999999999999999999999985
No 7
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.3e-37 Score=244.65 Aligned_cols=76 Identities=67% Similarity=1.040 Sum_probs=72.3
Q ss_pred hhhhhccchhHHHHHHHhhhcc---cccccHHHHHHHHHHHHHHhhhhhhhhhHhhhhcCccccCcccHHHHHHHhccc
Q 032668 60 ELLIRKLPFQRLVREIAQDFKT---DLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMPKDIQLARRIRGER 135 (136)
Q Consensus 60 ~lli~k~pF~rlVreI~~~~~~---~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~kDiqLa~rirg~~ 135 (136)
.+||||+||+||||||+++|.+ ++|||++||.|||||+|+|||+||||+|+||+|||||||||+|||||+||||++
T Consensus 9 ~~lI~KlPFqRLVREIaq~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEd~nLcaiHAkRVTim~kDiqLarrirg~~ 87 (235)
T 2l5a_A 9 KLLISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLARRIRGQF 87 (235)
T ss_dssp --CCSCCHHHHHHHHHHHTSCGGGTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGTTHHHHHHTSSCSC
T ss_pred cccccCccHHHHHHHHHHHhccCCccceecHHHHHHHHHHHHHHHHHHHhhhHHHHhcccccccchhhHHHHHHHhhcc
Confidence 4899999999999999999975 899999999999999999999999999999999999999999999999999985
No 8
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=99.95 E-value=3.2e-28 Score=178.49 Aligned_cols=73 Identities=55% Similarity=0.865 Sum_probs=68.4
Q ss_pred hhhccchhHHHHHHHhhhcc---cccccHHHHHHHHHHHHHHhhhhhhhhhHhhhhc-----------------------
Q 032668 62 LIRKLPFQRLVREIAQDFKT---DLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHA----------------------- 115 (136)
Q Consensus 62 li~k~pF~rlVreI~~~~~~---~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~Ha----------------------- 115 (136)
||||+||+||||||++++.+ ++|||++||.|||||+|+|||+||||+|+||+||
T Consensus 1 LI~klPF~RLVREI~~~~~~~~~~lRfq~~Al~ALQeAsEayLV~lFEd~nlcaiHA~~gGvkRIS~~iy~e~r~vl~~~ 80 (121)
T 2ly8_A 1 LISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHLVPRGSKRISGLIYEEVRAVLKSF 80 (121)
T ss_dssp CCSCCHHHHHHHHHHHHHTTCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCSSCCSSCHHHHHHHHHHHH
T ss_pred CCCccchHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhHHHHcCCccCccchhHHHHHHHHHHHHHH
Confidence 69999999999999999987 8999999999999999999999999999999875
Q ss_pred ---------------CccccCcccHHHHHHHhcc
Q 032668 116 ---------------RRVTIMPKDIQLARRIRGE 134 (136)
Q Consensus 116 ---------------kRvTi~~kDiqLa~rirg~ 134 (136)
+|.||+..||.++.+-.|.
T Consensus 81 l~~i~rdav~yaehA~RKTVta~DV~~Alkr~G~ 114 (121)
T 2ly8_A 81 LESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGR 114 (121)
T ss_dssp HHHHHHHHHHHHHHTTCCCBCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhCCC
Confidence 7889999999999888775
No 9
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=99.83 E-value=1.8e-21 Score=128.40 Aligned_cols=64 Identities=28% Similarity=0.362 Sum_probs=61.3
Q ss_pred hhccchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHhhhhhhhhhHhhhhcCccccCcccHHHHHHH
Q 032668 63 IRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMPKDIQLARRI 131 (136)
Q Consensus 63 i~k~pF~rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~kDiqLa~ri 131 (136)
||++||+|+++++ ++.+|+.+|+.+||+++|.|++.||+|||.||.|+||+||+++||+++++.
T Consensus 3 lP~a~v~Ri~k~~-----~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~ 66 (68)
T 1b67_A 3 LPIAPIGRIIKNA-----GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKM 66 (68)
T ss_dssp SCHHHHHHHHHHT-----TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGGG
T ss_pred CCccHHHHHHhcC-----CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 7999999999998 579999999999999999999999999999999999999999999999764
No 10
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=99.70 E-value=1e-17 Score=111.18 Aligned_cols=64 Identities=30% Similarity=0.358 Sum_probs=60.6
Q ss_pred hhhccchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHhhhhhhhhhHhhhhcCccccCcccHHHHHH
Q 032668 62 LIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMPKDIQLARR 130 (136)
Q Consensus 62 li~k~pF~rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~kDiqLa~r 130 (136)
.||+.||.||+|+. +..+|+.+|+++|||++|.|++.+++||+.+|.|+||.||+++||+|+.+
T Consensus 6 ~lp~a~v~Rl~r~~-----g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~ 69 (70)
T 1ku5_A 6 ELPIAPVDRLIRKA-----GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK 69 (70)
T ss_dssp CSCHHHHHHHHHHT-----TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHT
T ss_pred cCChHHHHHHHHHc-----CcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 48999999999985 57899999999999999999999999999999999999999999999975
No 11
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.57 E-value=1.7e-15 Score=105.33 Aligned_cols=73 Identities=14% Similarity=0.191 Sum_probs=64.4
Q ss_pred hchhhhhhccchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHhhhhhhhhhHhhhhcCccccCcccHHHHHHHh
Q 032668 57 KSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMPKDIQLARRIR 132 (136)
Q Consensus 57 kst~lli~k~pF~rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~kDiqLa~rir 132 (136)
+++++.+|++++.|+++++.. ++.+|+.+|..+||+++|.|+..|+++|+.||.|++|.||+++||..|.+=.
T Consensus 3 ~~~d~~LP~a~i~ri~K~~~~---~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~~l 75 (93)
T 1n1j_A 3 REQDIYLPIANVARIMKNAIP---QTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTL 75 (93)
T ss_dssp ----CCCCHHHHHHHHHHTSC---TTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHT
T ss_pred CcccccCChhHHHHHHHHhCC---ccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHc
Confidence 356789999999999999854 4689999999999999999999999999999999999999999999998733
No 12
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=99.17 E-value=3.7e-11 Score=88.32 Aligned_cols=69 Identities=20% Similarity=0.239 Sum_probs=67.0
Q ss_pred hccchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHhhhhhhhhhHhhhhcCccccCcccHHHHHHHh
Q 032668 64 RKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMPKDIQLARRIR 132 (136)
Q Consensus 64 ~k~pF~rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~kDiqLa~rir 132 (136)
++..|..+|+.|+.++++|.+++..||..|....++++.++-.+|..++.|++|.||+++|||.|.||.
T Consensus 34 ~~esy~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLl 102 (126)
T 1tzy_B 34 RKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLL 102 (126)
T ss_dssp CCCCCHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 678899999999999999999999999999999999999999999999999999999999999999985
No 13
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=99.17 E-value=3.8e-11 Score=87.93 Aligned_cols=69 Identities=19% Similarity=0.244 Sum_probs=66.8
Q ss_pred hccchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHhhhhhhhhhHhhhhcCccccCcccHHHHHHHh
Q 032668 64 RKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMPKDIQLARRIR 132 (136)
Q Consensus 64 ~k~pF~rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~kDiqLa~rir 132 (136)
++..|..+|+.|+.++++|.+++..|+..|....++++.++-.+|..++.|++|.||+++|||+|.||.
T Consensus 31 ~~esy~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLl 99 (123)
T 2nqb_D 31 RKESYAIYIYTVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLL 99 (123)
T ss_dssp CCCCSHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHh
Confidence 567899999999999999999999999999999999999999999999999999999999999999985
No 14
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=98.85 E-value=2.2e-09 Score=75.90 Aligned_cols=72 Identities=21% Similarity=0.213 Sum_probs=62.8
Q ss_pred chhhhhhccchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHhhhhhhhhhHhhhhcCccccCcccHHHHHHHhcc
Q 032668 58 STELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMPKDIQLARRIRGE 134 (136)
Q Consensus 58 st~lli~k~pF~rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~kDiqLa~rirg~ 134 (136)
+...-||+.+..||.+.. . .-|++.+|.+.|++..|.|+..+.+||..+|-|++|-||++.||++|.+-.|+
T Consensus 25 ~~~~gip~~~I~Rlar~~----G-~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~g~ 96 (103)
T 1tzy_D 25 DNIQGITKPAIRRLARRG----G-VKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGR 96 (103)
T ss_dssp CGGGGSCHHHHHHHHHHT----T-CCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTC
T ss_pred hhcccCCHHHHHHHHHHc----C-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHcCC
Confidence 334448999888887653 2 36999999999999999999999999999999999999999999999997765
No 15
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=98.84 E-value=2e-09 Score=76.14 Aligned_cols=72 Identities=21% Similarity=0.235 Sum_probs=60.2
Q ss_pred chhhhhhccchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHhhhhhhhhhHhhhhcCccccCcccHHHHHHHhcc
Q 032668 58 STELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMPKDIQLARRIRGE 134 (136)
Q Consensus 58 st~lli~k~pF~rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~kDiqLa~rirg~ 134 (136)
+...-||+.+..||.+.. . .-|++.+|.+.|++..|.|+..+.+||..+|-|++|-||++.||++|.+-.|+
T Consensus 25 ~~~~gip~~~I~Rlar~~----G-~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~g~ 96 (103)
T 2yfw_B 25 DNIQGITKPAIRRLARRG----G-VKRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGR 96 (103)
T ss_dssp -----CCHHHHHHHHHHT----T-CCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC-
T ss_pred hhhccCCHHHHHHHHHHc----C-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCC
Confidence 333448999988887653 2 36999999999999999999999999999999999999999999999997775
No 16
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=98.81 E-value=3.9e-09 Score=74.73 Aligned_cols=70 Identities=21% Similarity=0.239 Sum_probs=62.9
Q ss_pred hhhhhccchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHhhhhhhhhhHhhhhcCccccCcccHHHHHHHhcc
Q 032668 60 ELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMPKDIQLARRIRGE 134 (136)
Q Consensus 60 ~lli~k~pF~rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~kDiqLa~rirg~ 134 (136)
..-||+.+..||++.. ...+++.+|.++|+++.|.|+..+.+||..++-|++|-||++.||.+|++-.|+
T Consensus 26 i~~ip~~~I~Rlar~~-----Gv~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~g~ 95 (102)
T 1id3_B 26 IQGITKPAIRRLARRG-----GVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGR 95 (102)
T ss_dssp GGGSCHHHHHHHHHHT-----TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTC
T ss_pred cCCCCHHHHHHHHHHc-----CchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCC
Confidence 3458999988888663 347999999999999999999999999999999999999999999999987775
No 17
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=98.77 E-value=4.8e-09 Score=70.30 Aligned_cols=66 Identities=15% Similarity=0.268 Sum_probs=59.6
Q ss_pred hhhccchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHhhhhhhhhhHhhhhcCccccCcccHHHHHHH
Q 032668 62 LIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMPKDIQLARRI 131 (136)
Q Consensus 62 li~k~pF~rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~kDiqLa~ri 131 (136)
.+|+++..|+++++. ++.+++.+|.++|++++|.|+..|-..|+..+.|.+|-||.++||+.|.+.
T Consensus 4 ~LP~A~V~rI~K~~~----p~~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~~ 69 (76)
T 3b0c_W 4 TVPRGTLRKIIKKHK----PHLRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAKV 69 (76)
T ss_dssp CCCHHHHHHHHHHHC----TTCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHH
T ss_pred cccccHHHHHHHHhC----CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 468888888777654 478999999999999999999999999999999999999999999998875
No 18
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=98.72 E-value=5.1e-09 Score=71.50 Aligned_cols=69 Identities=22% Similarity=0.231 Sum_probs=61.5
Q ss_pred hhhhccchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHhhhhhhhhhHhhhhcCccccCcccHHHHHHHhcc
Q 032668 61 LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMPKDIQLARRIRGE 134 (136)
Q Consensus 61 lli~k~pF~rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~kDiqLa~rirg~ 134 (136)
.-||+.+..||.+.. ...+++.+|.++|++..|.|+..+.+||..++-|++|-||++.||.+|.+-.|+
T Consensus 9 ~~ip~~~I~Riar~~-----Gv~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~g~ 77 (84)
T 2hue_C 9 QGITKPAIRRLARRG-----GVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGR 77 (84)
T ss_dssp CSSCHHHHHHHHHHT-----TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTTCE
T ss_pred CCCCHHHHHHHHHHc-----CchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCC
Confidence 448999888887653 347999999999999999999999999999999999999999999999887664
No 19
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=98.68 E-value=1.4e-08 Score=76.78 Aligned_cols=69 Identities=19% Similarity=0.064 Sum_probs=63.9
Q ss_pred chhhhhhccchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHhhhhhhhhhHhhhhcCccccCcccHHHHHHH
Q 032668 58 STELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMPKDIQLARRI 131 (136)
Q Consensus 58 st~lli~k~pF~rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~kDiqLa~ri 131 (136)
.-++.||+.|..|+.|+- +..|++.+|-++|+++.|.|+..+.++|+..|.|++|.||++.||+++.+-
T Consensus 78 ~~~l~lP~a~V~Ri~k~~-----g~~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~ 146 (154)
T 1f1e_A 78 YDGELFGRATVRRILKRA-----GIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITY 146 (154)
T ss_dssp CCSCCCCHHHHHHHHHHT-----TCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred cccccCCccHHHHHHHHc-----CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 456789999999999885 567999999999999999999999999999999999999999999999864
No 20
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=98.68 E-value=3.5e-08 Score=76.52 Aligned_cols=69 Identities=16% Similarity=0.232 Sum_probs=65.9
Q ss_pred hccchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHhhhhhhhhhHhhhhcCccccCcccHHHHHHHh
Q 032668 64 RKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMPKDIQLARRIR 132 (136)
Q Consensus 64 ~k~pF~rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~kDiqLa~rir 132 (136)
++..|..+++.|+.++++|.+++.+||..|....++++..+-.+|..++.|++|.||+++|||.+.+|-
T Consensus 1 ~~~~~~~yi~kvLkqv~p~~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avrl~ 69 (192)
T 2jss_A 1 RKETYSSYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRLI 69 (192)
T ss_dssp CCSTTHHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHcccCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHh
Confidence 367899999999999999999999999999999999999999999999999999999999999999873
No 21
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=98.68 E-value=2.9e-08 Score=71.22 Aligned_cols=70 Identities=20% Similarity=0.234 Sum_probs=58.4
Q ss_pred hhhhhccchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHhhhhhhhhhHhhhhcCccccCcccHHHHHHHhcc
Q 032668 60 ELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMPKDIQLARRIRGE 134 (136)
Q Consensus 60 ~lli~k~pF~rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~kDiqLa~rirg~ 134 (136)
++-||+..-.||+++- +..+++.+|.++|+++++.|+..+..||+..|-|++|-||++.|+.++.+=-|.
T Consensus 5 d~~lP~a~I~Ri~r~~-----g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g~ 74 (111)
T 3b0c_T 5 EPEIASSLIKQIFSHY-----VKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQGL 74 (111)
T ss_dssp -----CHHHHHHHHHH-----HCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHHHC-----CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCCC
Confidence 4567888777776554 568999999999999999999999999999999999999999999999886553
No 22
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=98.55 E-value=7.9e-08 Score=66.88 Aligned_cols=66 Identities=26% Similarity=0.192 Sum_probs=57.0
Q ss_pred ccchhHHHHHHHhhhc--ccccccHHHHHHHHHHHHHHhhhhhhhhhHhhhhcCccccCcccHHHHHH
Q 032668 65 KLPFQRLVREIAQDFK--TDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMPKDIQLARR 130 (136)
Q Consensus 65 k~pF~rlVreI~~~~~--~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~kDiqLa~r 130 (136)
|..+.--|-.|+++.. .+..++++++.+|-|.++.|+..+-.|+...|-||+|.||.+.|+.|+.|
T Consensus 11 Kaal~~~V~ki~~e~~~~~g~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~R 78 (90)
T 3v9r_A 11 KARLWIRVEERLQQVLSSEDIKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLR 78 (90)
T ss_dssp HHHHHHHHHHHHHHHSCSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhcCceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 4555666667776663 24789999999999999999999999999999999999999999999865
No 23
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=98.54 E-value=1.7e-07 Score=62.09 Aligned_cols=62 Identities=24% Similarity=0.434 Sum_probs=56.2
Q ss_pred HHHHHHHhhhcccccccHHHHHHHHHHHHHHhhhhhhhhhHhhhhcCccccCcccHHHHHHHh
Q 032668 70 RLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMPKDIQLARRIR 132 (136)
Q Consensus 70 rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~kDiqLa~rir 132 (136)
++|..|+.+.+- -+++..+...|-|.+|.|...+.+||..++-||+|.||...||+||...+
T Consensus 5 ~~i~~iLk~~G~-~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~~ 66 (68)
T 1taf_A 5 QVIMSILKELNV-QEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEVT 66 (68)
T ss_dssp HHHHHHHHHTTC-CCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHT
T ss_pred HHHHHHHHHCCC-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhc
Confidence 567777776654 49999999999999999999999999999999999999999999998765
No 24
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=98.50 E-value=1.3e-08 Score=85.19 Aligned_cols=50 Identities=42% Similarity=0.524 Sum_probs=12.4
Q ss_pred cccccccccCCCCCCCchhhhhhcccCCCCCCCCCCCCcCCCCchhhHHH
Q 032668 3 RTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREI 52 (136)
Q Consensus 3 RtK~~a~ks~g~kaprk~~a~k~~~k~~p~~~~~~~~~r~~pg~~al~EI 52 (136)
||||+|++++||++|++++++++++++.|..+++++++|++||++++.|.
T Consensus 3 ~tk~tarkstggkaprk~~~~k~~rk~~~~~~~~kkp~R~rPGt~a~~e~ 52 (361)
T 2r10_A 3 DPFTTARKSTGGKAPRKGGMVVKKRKLATEAGGSDERPKYLPGKHPKNQE 52 (361)
T ss_dssp ------------------------------------CCSSCCSCCBCCCS
T ss_pred cccccccCCCCCCCCCccccccccCCCCCCCCCCCCCcccCCCccccccc
Confidence 79999999999999999999999988888888889999999999997664
No 25
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=98.47 E-value=1.3e-07 Score=67.67 Aligned_cols=66 Identities=24% Similarity=0.315 Sum_probs=56.2
Q ss_pred ccchhHHHHHHHhhhc--ccccccHHHHHHHHHHHHHHhhhhhhhhhHhhhhcCccccCcccHHHHHH
Q 032668 65 KLPFQRLVREIAQDFK--TDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMPKDIQLARR 130 (136)
Q Consensus 65 k~pF~rlVreI~~~~~--~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~kDiqLa~r 130 (136)
|..+.--|-.|+.+.. .+.+++++++.+|-|.++.|+..+..|+...|-||+|.||...|+.|+.|
T Consensus 18 Kaal~~~V~rI~~~~g~~~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~R 85 (107)
T 3b0b_B 18 RAAVHYTTGCLCQDVAEDKGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLAR 85 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHH
Confidence 4445555556666553 35799999999999999999999999999999999999999999999875
No 26
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=98.44 E-value=1.8e-07 Score=67.50 Aligned_cols=65 Identities=22% Similarity=0.341 Sum_probs=53.9
Q ss_pred cchhHHHHHHHhhhc--ccccccHHHHHHHHHHHHHHhhhhhhhhhHhhhhcCccccCcccHHHHHH
Q 032668 66 LPFQRLVREIAQDFK--TDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMPKDIQLARR 130 (136)
Q Consensus 66 ~pF~rlVreI~~~~~--~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~kDiqLa~r 130 (136)
....--|-.|+++.. .+..++++++.+|-|.++.|+..+-.|+...|-||+|.||.+.||.|+.|
T Consensus 27 aal~y~V~rIvke~gaer~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~R 93 (113)
T 4dra_A 27 AAVHYTVGCLCEEVALDKEMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLAR 93 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHH
Confidence 333344445554442 35779999999999999999999999999999999999999999999865
No 27
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=98.44 E-value=1.9e-07 Score=70.64 Aligned_cols=67 Identities=10% Similarity=0.092 Sum_probs=60.6
Q ss_pred hhccchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHhhhhhhhhhHhhhhcCccccCcccHHHHHHHhc
Q 032668 63 IRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMPKDIQLARRIRG 133 (136)
Q Consensus 63 i~k~pF~rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~kDiqLa~rirg 133 (136)
+|+.|..|++|+-+ +..|++.+|-++|+++.|.|+..+-.+|+..|.|++|.||++.|+..+..=+|
T Consensus 5 LP~a~V~Riik~~l----g~~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~~~lg 71 (154)
T 1f1e_A 5 LPKAAIERIFRQGI----GERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADVLM 71 (154)
T ss_dssp CCHHHHHHHHHTTS----TTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHHT
T ss_pred CCccHHHHHHHhcC----CccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcc
Confidence 68888888887754 45999999999999999999999999999999999999999999999986655
No 28
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=98.42 E-value=2.3e-07 Score=69.18 Aligned_cols=66 Identities=26% Similarity=0.341 Sum_probs=57.1
Q ss_pred ccchhHHHHHHHhhhc--ccccccHHHHHHHHHHHHHHhhhhhhhhhHhhhhcCccccCcccHHHHHH
Q 032668 65 KLPFQRLVREIAQDFK--TDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMPKDIQLARR 130 (136)
Q Consensus 65 k~pF~rlVreI~~~~~--~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~kDiqLa~r 130 (136)
|...+--|-.|+++.. .++.++.+++.+|-|+++.|+..+-.|+...|-||+|.||.+.||.|+.|
T Consensus 18 KaAl~y~VgkIvee~~~~~~~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~R 85 (140)
T 3vh5_A 18 RAAVHYTTGALAQDVAEDKGVLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLAR 85 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 4445555666666653 46889999999999999999999999999999999999999999999976
No 29
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=98.34 E-value=4.6e-07 Score=60.34 Aligned_cols=64 Identities=17% Similarity=0.256 Sum_probs=53.5
Q ss_pred hhccchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHhhhhhhhhhHhhhhcCccccCcccHHHHHHH
Q 032668 63 IRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMPKDIQLARRI 131 (136)
Q Consensus 63 i~k~pF~rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~kDiqLa~ri 131 (136)
+|..|..++. ++.+- -+.+.+|..+|-+-+|.++-.+.++|..++.|+||-||+..||.+|.++
T Consensus 7 lp~~~v~~ia----es~Gi-~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk~ 70 (70)
T 1taf_B 7 ISAESMKVIA----ESIGV-GSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLKV 70 (70)
T ss_dssp CCHHHHHHHH----HHTTC-CCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC-
T ss_pred CCHHHHHHHH----HHCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHcC
Confidence 5555655554 44432 4889999999999999999999999999999999999999999999763
No 30
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=98.29 E-value=1e-06 Score=64.45 Aligned_cols=71 Identities=20% Similarity=0.182 Sum_probs=59.9
Q ss_pred hhhhhccchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHhhhhhhhhhHhhhhcCccccCcccHHHHHHHhc
Q 032668 60 ELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMPKDIQLARRIRG 133 (136)
Q Consensus 60 ~lli~k~pF~rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~kDiqLa~rirg 133 (136)
++.+|..+-.|++++... ...+++.+|..+|++++|.|+..|-..|+..+.|.+|-||..+||..|..-.|
T Consensus 7 d~~LP~A~I~rImK~~~p---d~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l~ 77 (128)
T 2byk_B 7 DLNLPNAVIGRLIKEALP---ESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTELD 77 (128)
T ss_dssp ----CCSHHHHHHHHHSC---TTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHTT
T ss_pred cccCCHHHHHHHHHHhCc---ccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcC
Confidence 567888888888877653 46899999999999999999999999999999999999999999998876544
No 31
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=98.25 E-value=1.1e-06 Score=67.89 Aligned_cols=73 Identities=15% Similarity=0.264 Sum_probs=65.0
Q ss_pred hchhhhhhccchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHhhhhhhhhhHhhhhcCccccCcccHHHHHHHhc
Q 032668 57 KSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMPKDIQLARRIRG 133 (136)
Q Consensus 57 kst~lli~k~pF~rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~kDiqLa~rirg 133 (136)
...++.+|+.+..|++++++. +.+++.+|.++|+++++.|+.-|-..||..+.|.+|.||.+.||-.+..=.|
T Consensus 10 ~~eD~~LP~A~V~RImK~alp----~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~~Lg 82 (179)
T 1jfi_B 10 NDDDLTIPRAAINKMIKETLP----NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLG 82 (179)
T ss_dssp --CCCCCCHHHHHHHHHHHST----TCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHT
T ss_pred chhhhhcCHHHHHHHHHHhCC----ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcC
Confidence 445688999999999999863 6899999999999999999999999999999999999999999999876443
No 32
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=98.19 E-value=1.9e-06 Score=62.20 Aligned_cols=70 Identities=17% Similarity=0.270 Sum_probs=61.9
Q ss_pred hhhhhccchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHhhhhhhhhhHhhhhcCccccCcccHHHHHH
Q 032668 60 ELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMPKDIQLARR 130 (136)
Q Consensus 60 ~lli~k~pF~rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~kDiqLa~r 130 (136)
+.-.+.+|.+| |+.|++.-....+++.+|..++..|+|-|+..|.+.|+.+|...||.||+++||..|.+
T Consensus 36 d~k~~~lPvaR-IkrImK~d~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di~~Av~ 105 (119)
T 4g92_C 36 DYKIHQLPLAR-IKKVMKADPEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDIAAALS 105 (119)
T ss_dssp CSSCCSSCHHH-HHHHHHTSTTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHT
T ss_pred ccccCCCCHHH-HHHHHhhCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCHHHHHHHHh
Confidence 34456789988 68888865556799999999999999999999999999999999999999999999874
No 33
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=98.16 E-value=2.3e-06 Score=59.63 Aligned_cols=80 Identities=20% Similarity=0.314 Sum_probs=56.0
Q ss_pred hHHHHhhhhchhhhhhccchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHhhhhhhhhhHhhhhcCccccCcccHHHH
Q 032668 49 LREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMPKDIQLA 128 (136)
Q Consensus 49 l~EIr~~Qkst~lli~k~pF~rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~kDiqLa 128 (136)
+.||+..- ..+.--..+|-+|+ +.|++.-...-+++.+|..+|..|+|.|+..|.+.|+.+|.+.||.||+++||+++
T Consensus 4 ~~~~~~~~-~~~~~~~~lP~arI-krImK~~~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~A 81 (97)
T 1n1j_B 4 MEEIRNLT-VKDFRVQELPLARI-KKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMA 81 (97)
T ss_dssp -----------------CCHHHH-HHHHTTSTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHH
T ss_pred HHHHHhcc-cCCcCCCcCCHHHH-HHHHccCccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHH
Confidence 45666542 12233356677664 66777554446899999999999999999999999999999999999999999998
Q ss_pred HH
Q 032668 129 RR 130 (136)
Q Consensus 129 ~r 130 (136)
.+
T Consensus 82 v~ 83 (97)
T 1n1j_B 82 IT 83 (97)
T ss_dssp HT
T ss_pred Hh
Confidence 64
No 34
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=97.77 E-value=5.9e-05 Score=50.83 Aligned_cols=65 Identities=23% Similarity=0.325 Sum_probs=58.1
Q ss_pred hhhccchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHhhhhhhhhhHhhhhcCccccCcccHHHHHH
Q 032668 62 LIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMPKDIQLARR 130 (136)
Q Consensus 62 li~k~pF~rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~kDiqLa~r 130 (136)
++.|.-.+.||++| .+...+..++-++|.+.|++|+....+.|..+|.|.+--||.++|+||...
T Consensus 5 vl~k~~L~~Lv~~i----dp~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Le 69 (76)
T 1h3o_B 5 VLTKKKLQDLVREV----DPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLE 69 (76)
T ss_dssp SSCHHHHHHHHHHH----CSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHH
T ss_pred cccHHHHHHHHHhc----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Confidence 45676777777776 467899999999999999999999999999999999999999999999864
No 35
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=97.74 E-value=1.9e-05 Score=55.12 Aligned_cols=65 Identities=14% Similarity=0.196 Sum_probs=52.4
Q ss_pred ccchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHhhhhhhhhhHhhhhcCccccCcccHHHHHH
Q 032668 65 KLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMPKDIQLARR 130 (136)
Q Consensus 65 k~pF~rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~kDiqLa~r 130 (136)
.+|.+|+ +.|++.-...-+++.+|...|-.+.|.|+..|.+.|+.+|.+.+|-||.++||+++.+
T Consensus 11 ~fPvaRI-krimK~~~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~ 75 (98)
T 1jfi_A 11 RFPPARI-KKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIE 75 (98)
T ss_dssp CCCHHHH-HHHHTTSTTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC
T ss_pred CCChHHH-HHHHHcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHh
Confidence 4566664 6666654444699999999999999999999999999999999999999999998754
No 36
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=97.43 E-value=0.00013 Score=54.05 Aligned_cols=66 Identities=11% Similarity=0.103 Sum_probs=50.3
Q ss_pred hccchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHhhhhhhhhhHhh-hhcCccccCcccHHHHHH
Q 032668 64 RKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCA-IHARRVTIMPKDIQLARR 130 (136)
Q Consensus 64 ~k~pF~rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a-~HakRvTi~~kDiqLa~r 130 (136)
..+|..|+ +.|++.-...-.++.+|..++..|+|-|+..|.+.|+.+| ...||-||+++||..|..
T Consensus 18 ~~LPlaRI-KrIMK~dpdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~ 84 (140)
T 2byk_A 18 TFLPLSRV-RTIMKSSMDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVN 84 (140)
T ss_dssp ------------CCSSSSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHH
T ss_pred CCCCHHHH-HHHHhcCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHh
Confidence 45666664 7777755445689999999999999999999999999999 999999999999999875
No 37
>2x4w_B Histone H3.2; transcription, metal-binding, zinc-finger, chromatin regulator, transcription regulation; HET: M3L; 1.50A {Homo sapiens} PDB: 2x4x_B* 2x4y_B*
Probab=97.24 E-value=0.00011 Score=39.12 Aligned_cols=23 Identities=70% Similarity=1.040 Sum_probs=18.2
Q ss_pred cccCCCCCCCCCCCCcCCCCchh
Q 032668 26 ARKSAPTTGGVKKPHRYRPGTVA 48 (136)
Q Consensus 26 ~~k~~p~~~~~~~~~r~~pg~~a 48 (136)
++++.|..+++++++||+||++|
T Consensus 4 ark~~p~~~~~kk~~RyRPGtvA 26 (26)
T 2x4w_B 4 ARKSAPATGGVXKPHRYRXXXXX 26 (26)
T ss_pred cccCCCCCCccccccccccccCC
Confidence 44566667778899999999975
No 38
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=97.19 E-value=0.00029 Score=56.41 Aligned_cols=54 Identities=19% Similarity=0.259 Sum_probs=50.6
Q ss_pred ccccccHHHHHHHHHHHHHHhhhhhhhhhHhhhhcCccccCcccHHHHHHHhcc
Q 032668 81 TDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMPKDIQLARRIRGE 134 (136)
Q Consensus 81 ~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~kDiqLa~rirg~ 134 (136)
+--|++.++.+.+-++.|.||..+..||..+|-||+|.||++.|+.+|.+-.|.
T Consensus 175 GVkRIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALKr~gr 228 (235)
T 2l5a_A 175 GVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGR 228 (235)
T ss_dssp TCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhcCC
Confidence 446999999999999999999999999999999999999999999999987764
No 39
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=97.18 E-value=0.00057 Score=49.59 Aligned_cols=67 Identities=24% Similarity=0.248 Sum_probs=58.3
Q ss_pred hhhhhccchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHhhhhhhhhhHhhhhcCccccCcccHHHHHH
Q 032668 60 ELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMPKDIQLARR 130 (136)
Q Consensus 60 ~lli~k~pF~rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~kDiqLa~r 130 (136)
+|.+|-.+|.|+.++- ....|+..+|-..|-.+-|.+...++|.|...|.|+++.+|+|+||+||.+
T Consensus 21 gL~fPV~ri~R~Lk~~----~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~ 87 (123)
T 2nqb_C 21 GLQFPVGRIHRLLRKG----NYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 87 (123)
T ss_dssp TCSSCHHHHHHHHHHT----TSCSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred CeeccHHHHHHHHHcc----ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHh
Confidence 4677888888886552 223499999999999999999999999999999999999999999999976
No 40
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=97.15 E-value=0.00064 Score=49.12 Aligned_cols=67 Identities=15% Similarity=0.153 Sum_probs=59.0
Q ss_pred hhhhhccchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHhhhhhhhhhHhhhhcCccccCcccHHHHHH
Q 032668 60 ELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMPKDIQLARR 130 (136)
Q Consensus 60 ~lli~k~pF~rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~kDiqLa~r 130 (136)
.|.+|-.++.|+.++- ....|+..+|-..|-.+-|.+...++|.|...|.|+++.+|+|+||++|.+
T Consensus 20 gLqfPV~ri~R~Lk~~----~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~lAI~ 86 (120)
T 2f8n_G 20 GVIFPVGRMLRYIKKG----HPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVA 86 (120)
T ss_dssp TCSSCHHHHHHHHHHH----SSSCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred CccCChHHHHHHHHcC----ccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHh
Confidence 4778888888887663 223599999999999999999999999999999999999999999999976
No 41
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=97.13 E-value=0.00069 Score=49.55 Aligned_cols=67 Identities=24% Similarity=0.246 Sum_probs=58.5
Q ss_pred hhhhhccchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHhhhhhhhhhHhhhhcCccccCcccHHHHHH
Q 032668 60 ELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMPKDIQLARR 130 (136)
Q Consensus 60 ~lli~k~pF~rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~kDiqLa~r 130 (136)
+|.+|-.++.|+.++- ....|+..+|-..|-.+-|.+...++|.|...|.|+++.+|+|+||+||.+
T Consensus 23 gLqfPV~rI~R~Lk~~----~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~ 89 (129)
T 1tzy_A 23 GLQFPVGRVHRLLRKG----NYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIR 89 (129)
T ss_dssp TCSSCHHHHHHHHHHT----TSSSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred ceeccHHHHHHHHHcc----ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHh
Confidence 4678888888887552 223499999999999999999999999999999999999999999999976
No 42
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=97.02 E-value=0.00097 Score=48.69 Aligned_cols=68 Identities=18% Similarity=0.145 Sum_probs=58.2
Q ss_pred hhhhhccchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHhhhhhhhhhHhhhhcCccccCcccHHHHHH
Q 032668 60 ELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMPKDIQLARR 130 (136)
Q Consensus 60 ~lli~k~pF~rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~kDiqLa~r 130 (136)
+|.+|-.++.|+.++-. ....|+..+|-..|-..-|.+...++|-|...|.|.++.+|+|+||+||.+
T Consensus 25 gLqfPV~ri~R~Lk~~~---~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItprhi~lAI~ 92 (128)
T 1f66_C 25 GLQFPVGRIHRHLKSRT---TSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 92 (128)
T ss_dssp TCSSCHHHHHHHHHHTS---CSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHH
T ss_pred CccCChHHHHHHHHHcc---cchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHh
Confidence 46788888888875521 123589999999999999999999999999999999999999999999976
No 43
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=97.01 E-value=0.00069 Score=49.68 Aligned_cols=67 Identities=25% Similarity=0.257 Sum_probs=57.7
Q ss_pred hhhhhccchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHhhhhhhhhhHhhhhcCccccCcccHHHHHH
Q 032668 60 ELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMPKDIQLARR 130 (136)
Q Consensus 60 ~lli~k~pF~rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~kDiqLa~r 130 (136)
+|.+|-.++.|+.++ -....|+..+|-..|-.+-|.+...++|.|...|.|+++.+|+|+||+||.+
T Consensus 23 gLqfPV~rI~R~Lk~----~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI~ 89 (131)
T 1id3_C 23 GLTFPVGRVHRLLRR----GNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIR 89 (131)
T ss_dssp TCSSCHHHHHHHHHT----TCSCSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred CeecCHHHHHHHHHc----cccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHh
Confidence 466788888887654 2223499999999999999999999999999999999999999999999976
No 44
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=96.98 E-value=0.00087 Score=50.25 Aligned_cols=67 Identities=24% Similarity=0.250 Sum_probs=58.3
Q ss_pred hhhhhccchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHhhhhhhhhhHhhhhcCccccCcccHHHHHH
Q 032668 60 ELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMPKDIQLARR 130 (136)
Q Consensus 60 ~lli~k~pF~rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~kDiqLa~r 130 (136)
.|.+|-.+|.|+.++- ....|+..+|-..|-..-|.+...++|.|...|.|+++.+|+|+||+||.+
T Consensus 42 gLqFPVgrI~R~LK~~----~~a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrItprhI~lAI~ 108 (149)
T 2f8n_K 42 GLQFPVGRVHRLLRKG----NYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIR 108 (149)
T ss_dssp TCSSCHHHHHHHHHHT----TSCSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred CeeccHHHHHHHHHcc----ccccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHh
Confidence 4778888888886552 223499999999999999999999999999999999999999999999976
No 45
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=96.87 E-value=0.00071 Score=52.18 Aligned_cols=68 Identities=24% Similarity=0.222 Sum_probs=58.3
Q ss_pred hhhhhccchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHhhhhhhhhhHhhhhcCccccCcccHHHHHH
Q 032668 60 ELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMPKDIQLARR 130 (136)
Q Consensus 60 ~lli~k~pF~rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~kDiqLa~r 130 (136)
+|.+|-.++.|+.++-. ....|+..+|-..|-..-|.+...++|.|...|.|+++.+|+|+||++|.+
T Consensus 103 gl~fPv~ri~R~lk~~~---~a~~Rv~~~A~vyLaavLEyl~~eIlelA~n~a~~~~~~~I~p~~i~lAi~ 170 (192)
T 2jss_A 103 GLQFPVGRIKRYLKRHA---TGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIR 170 (192)
T ss_dssp SCCSCHHHHHHHHHHTT---CSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHhcC---ccccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHh
Confidence 57788888888875521 123689999999999999999999999999999999999999999999976
No 46
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=92.12 E-value=0.03 Score=42.31 Aligned_cols=21 Identities=95% Similarity=1.164 Sum_probs=12.6
Q ss_pred CcccccccccCCCCCCCchhh
Q 032668 2 ARTKQTARKSTGGKAPRKQLA 22 (136)
Q Consensus 2 ARtK~~a~ks~g~kaprk~~a 22 (136)
||||++|+|++|+|++.+++.
T Consensus 1 ~~~~~~~r~s~~~K~~~~~~r 21 (159)
T 3a1b_A 1 ARTKQTARKSTGGKAPRKQLR 21 (159)
T ss_dssp CEEEECCCC-------CHHHH
T ss_pred CccccccccccCCCcchHHHH
Confidence 799999999999999999883
No 47
>3avr_B Histone H3; cupin superfamily, TRI/dimethyllysine demethylase, oxidoredu structural protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens}
Probab=92.02 E-value=0.071 Score=28.00 Aligned_cols=25 Identities=80% Similarity=1.018 Sum_probs=18.3
Q ss_pred CchhhhhhcccCCCCCCCCCCCCcC
Q 032668 18 RKQLATKAARKSAPTTGGVKKPHRY 42 (136)
Q Consensus 18 rk~~a~k~~~k~~p~~~~~~~~~r~ 42 (136)
+++++++++++++|..+++++++|.
T Consensus 1 rK~la~Kaarks~p~~~g~kk~hR~ 25 (26)
T 3avr_B 1 RKQLATKAARXSAPATGGVKKPXXX 25 (26)
T ss_pred CcccccccccCCCCCCccccccCCC
Confidence 3667777777777877887777763
No 48
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=67.94 E-value=14 Score=24.68 Aligned_cols=57 Identities=11% Similarity=0.095 Sum_probs=39.5
Q ss_pred HHHHHHHhhh--cccccccHHHHHHHHHHHHHHhhhhhhhhhHhhhhcCccccCcccHH
Q 032668 70 RLVREIAQDF--KTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMPKDIQ 126 (136)
Q Consensus 70 rlVreI~~~~--~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~kDiq 126 (136)
.+|.+|++.. +..++++.+|+.++.+-.+-|...-+.-|..-|---.-.+|.+.|++
T Consensus 16 ~li~ril~~~F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~e~LE 74 (84)
T 4dra_E 16 ELVSRLLHLHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAEDALRVDVDQLE 74 (84)
T ss_dssp HHHHHHHHTTCSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHH
T ss_pred HHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHH
Confidence 4555666543 36799999999999998888877666655554443335567777765
No 49
>1r4v_A Hypothetical protein AQ_328; structural genomics, all-alpha, histon fold, PSI, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.90A {Aquifex aeolicus} SCOP: a.22.1.4
Probab=67.09 E-value=6.8 Score=29.71 Aligned_cols=71 Identities=17% Similarity=0.163 Sum_probs=56.5
Q ss_pred hhhchhh--hhhccchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHhhhhhhhhhHhhhhcCccccCcccHHHHHH
Q 032668 55 YQKSTEL--LIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMPKDIQLARR 130 (136)
Q Consensus 55 ~Qkst~l--li~k~pF~rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~kDiqLa~r 130 (136)
|.+-.+. +|+-.-|.++.|+-+ ++-...+-+.-+-+.+|.-|..||+-|+.-|-..+|-.|.+.|+-+-..
T Consensus 17 ~~~~~~Mm~vmg~~kferlFR~aa-----gLDvdK~d~kr~~d~V~~Kl~DLl~va~~~Ak~NgRDvI~~~DLPITKG 89 (171)
T 1r4v_A 17 YSKIETMLRPKGFDKLDHYFRTEL-----DIDLTDETIELLLNSVKAAFGKLFYGAEQRARWNGRDFIALADLNITKA 89 (171)
T ss_dssp ----CCTTSCTTHHHHHHHHHHHH-----CCCCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTTCSEECGGGSCCCHH
T ss_pred HHHHHHHHhcCChHHHHHHHHHHh-----ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccCCccHH
Confidence 4444445 777778899988765 4667788888999999999999999999999999999999999755443
No 50
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=63.11 E-value=19 Score=23.77 Aligned_cols=57 Identities=11% Similarity=0.083 Sum_probs=38.9
Q ss_pred HHHHHHHhhh--cccccccHHHHHHHHHHHHHHhhhhhhhhhHhhhhcCccccCcccHH
Q 032668 70 RLVREIAQDF--KTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMPKDIQ 126 (136)
Q Consensus 70 rlVreI~~~~--~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~kDiq 126 (136)
.|+..|.+.. ....+++.+|+.++.+--+-|.+.-+.-|..-|---.-..|.+.|++
T Consensus 12 ~lI~ril~~~f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~~~LE 70 (81)
T 3b0b_C 12 ETVERLLRLHFRDGRTRVNGDALLLMAELLKVFVREAAARAARQAQAEDLEKVDIEHVE 70 (81)
T ss_dssp HHHHHHHHHHCCSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHH
T ss_pred HHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecHHHHH
Confidence 4555565554 25789999999999988888877776666555433344466666665
No 51
>1wwi_A Hypothetical protein TTHA1479; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 1.58A {Thermus thermophilus HB8} SCOP: a.22.1.4 PDB: 1wws_A
Probab=53.27 E-value=11 Score=27.93 Aligned_cols=63 Identities=21% Similarity=0.266 Sum_probs=49.7
Q ss_pred hhccchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHhhhhhhhhhHhhhhcCccccCcccHHHHHH
Q 032668 63 IRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMPKDIQLARR 130 (136)
Q Consensus 63 i~k~pF~rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~kDiqLa~r 130 (136)
|+-.-|.++.|+-+. +-...+-+.-+-+.+|.-|..||+-|+.-|...+|-.|.+.|+-+-..
T Consensus 3 m~~~~~e~lFR~aa~-----LdvdK~d~~r~~d~V~~Kl~DLl~va~~~Ak~n~RdvI~~~DLPITkG 65 (148)
T 1wwi_A 3 MKVAEFERLFRQAAG-----LDVDKNDLKRVSDFLRNKLYDLLAVAERNAKYNGRDLIFEPDLPIAKG 65 (148)
T ss_dssp SCHHHHHHHHHHHHC-----CCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECGGGSCCCHH
T ss_pred CCHHHHHHHHHHHhc-----cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccCCccHH
Confidence 334457778777653 555566677788999999999999999999999999999999754433
No 52
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=50.42 E-value=39 Score=26.12 Aligned_cols=51 Identities=16% Similarity=0.251 Sum_probs=43.7
Q ss_pred ccccccHHHHHHHHHHHH----HHhhhhhhhhhHhhhhcCccccCcccHHHHHHH
Q 032668 81 TDLRFQSHAVLALQEAAE----AYLVGLFEDTNLCAIHARRVTIMPKDIQLARRI 131 (136)
Q Consensus 81 ~~~r~~~~Al~aLQeaaE----~~Lv~lfe~a~l~a~HakRvTi~~kDiqLa~ri 131 (136)
.+..|+.+++..|-+.++ .++..+++.+...|.-.++-+|+..|++-+...
T Consensus 275 ~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~ 329 (368)
T 3uk6_A 275 EDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSL 329 (368)
T ss_dssp TTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 457799999999998887 478889999999888889999999999887765
No 53
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=39.89 E-value=59 Score=24.73 Aligned_cols=51 Identities=8% Similarity=0.024 Sum_probs=41.5
Q ss_pred ccccccHHHHHHHHHHHHH-------HhhhhhhhhhHhhhhcCccccCcccHHHHHHH
Q 032668 81 TDLRFQSHAVLALQEAAEA-------YLVGLFEDTNLCAIHARRVTIMPKDIQLARRI 131 (136)
Q Consensus 81 ~~~r~~~~Al~aLQeaaE~-------~Lv~lfe~a~l~a~HakRvTi~~kDiqLa~ri 131 (136)
.++.|+.+++..|.+.+.. .+..+.+.|...|.-.++-+|.+.|+.-+..+
T Consensus 264 ~~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~ 321 (350)
T 1g8p_A 264 PKVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVATM 321 (350)
T ss_dssp GGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHH
Confidence 4568999999999888764 56778888888888788889999999877654
No 54
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=37.56 E-value=87 Score=26.78 Aligned_cols=50 Identities=18% Similarity=0.155 Sum_probs=41.1
Q ss_pred cccccHHHHHHHHHHH-------------HHHhhhhhhhhhHhhhhcCccccCcccHHHHHHH
Q 032668 82 DLRFQSHAVLALQEAA-------------EAYLVGLFEDTNLCAIHARRVTIMPKDIQLARRI 131 (136)
Q Consensus 82 ~~r~~~~Al~aLQeaa-------------E~~Lv~lfe~a~l~a~HakRvTi~~kDiqLa~ri 131 (136)
...|+.+|+..|.+.+ ...|..+.+.|...|....+-.|+..|++-|...
T Consensus 312 ~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 312 IPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp SCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 4689999999988754 5677888998888888888889999999888754
No 55
>3qb5_K Translin-associated protein X; alpha helical bundle, ribonuclease, hydrolase; 2.95A {Homo sapiens} PDB: 3pja_J
Probab=36.53 E-value=47 Score=26.49 Aligned_cols=25 Identities=28% Similarity=0.198 Sum_probs=18.1
Q ss_pred cccccHHHHHHHHHHHHHHhhhhhh
Q 032668 82 DLRFQSHAVLALQEAAEAYLVGLFE 106 (136)
Q Consensus 82 ~~r~~~~Al~aLQeaaE~~Lv~lfe 106 (136)
.++|...--.+|||.+|++.-.-|=
T Consensus 113 ~yry~~~~s~~lQEyVEA~sf~~yL 137 (290)
T 3qb5_K 113 MHQFHRAITTGLQEYVEAVSFQHFI 137 (290)
T ss_dssp STTTGGGTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678765557999999988665543
No 56
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=31.47 E-value=82 Score=29.25 Aligned_cols=48 Identities=13% Similarity=0.135 Sum_probs=42.4
Q ss_pred ccccHHHHHHHHHHHHHHhhhhhhhhhHhhhhcCccccCcccHHHHHH
Q 032668 83 LRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMPKDIQLARR 130 (136)
Q Consensus 83 ~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~kDiqLa~r 130 (136)
.|+.+.|-.-|--.-|.....++|-|.-.+...++..|.|+|+++|.+
T Consensus 120 ~r~~~~~~~y~~avleyl~~~~l~la~~~~~~~~~~~i~p~~~~~ai~ 167 (1049)
T 3ksy_A 120 YKIDHQVSVYIVAVLEYISADILKLVGNYVRNIRHYEITKQDIKVAMC 167 (1049)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCHHHHHHHHH
T ss_pred cccCCCCcchhHHHHHHHHHHHHHHHHHHHHHcCCceecCcccccccc
Confidence 488888887787778888889999999999999999999999999874
No 57
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=29.10 E-value=33 Score=24.40 Aligned_cols=31 Identities=10% Similarity=0.158 Sum_probs=27.5
Q ss_pred ccccccHHHHHHHHHHHHHHhhhhhhhhhHh
Q 032668 81 TDLRFQSHAVLALQEAAEAYLVGLFEDTNLC 111 (136)
Q Consensus 81 ~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~ 111 (136)
+--|++.++.+.+.++.|.||..+..||...
T Consensus 61 GvkRIS~~iy~e~r~vl~~~l~~i~rdav~y 91 (121)
T 2ly8_A 61 GSKRISGLIYEEVRAVLKSFLESVIRDSVTY 91 (121)
T ss_dssp CSSCCSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3468999999999999999999999998754
No 58
>1h3o_A Transcription initiation factor TFIID 135 kDa subunit; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=28.95 E-value=45 Score=21.82 Aligned_cols=52 Identities=21% Similarity=0.248 Sum_probs=37.8
Q ss_pred hhccchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHhhhhhhhhhHhhhhc
Q 032668 63 IRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHA 115 (136)
Q Consensus 63 i~k~pF~rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~Ha 115 (136)
+...|.++=+.||+..++ =--+.++....+--|+|..|-+|+|.-...|-|.
T Consensus 3 L~~~~Lqkri~~I~~k~g-l~~~~~dv~~~iS~a~qeRLr~llekl~~~a~~R 54 (75)
T 1h3o_A 3 LLQAPLQRRILEIGKKHG-ITELHPDVVSYVSHATQQRLQNLVEKISETAQQK 54 (75)
T ss_dssp SCHHHHHHHHHHHHHTTT-CCEECTTHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred cccHHHHHHHHHHHHhcC-CCcCChhHHHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 455677888889987653 2357788999999999999999999877666653
No 59
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=26.74 E-value=38 Score=20.89 Aligned_cols=31 Identities=23% Similarity=0.460 Sum_probs=24.4
Q ss_pred HhhhhhhhhhHhhhhcCccccCcccHHHHHH
Q 032668 100 YLVGLFEDTNLCAIHARRVTIMPKDIQLARR 130 (136)
Q Consensus 100 ~Lv~lfe~a~l~a~HakRvTi~~kDiqLa~r 130 (136)
=|..+..+|.+.++...+..|+..|+.-+..
T Consensus 41 Di~~l~~eA~~~a~~~~~~~i~~~d~~~Al~ 71 (78)
T 3kw6_A 41 EVKGVCTEAGMYALRERRVHVTQEDFEMAVA 71 (78)
T ss_dssp HHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 3666777777888888889999999987653
No 60
>1kn1_B Allophycocyanin; helix-turn-helix, electron transport; HET: CYC; 2.20A {Porphyra yezoensis} SCOP: a.1.1.3 PDB: 1all_B* 3dbj_B* 2v8a_B* 1b33_B* 2vjt_B*
Probab=23.20 E-value=90 Score=22.66 Aligned_cols=58 Identities=12% Similarity=0.211 Sum_probs=38.9
Q ss_pred chhhHHHHhhhhch--hhhhhccchh-----HHHHHHHhhhcccccccHHHHHHHHHHHHHHhhh
Q 032668 46 TVALREIRKYQKST--ELLIRKLPFQ-----RLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVG 103 (136)
Q Consensus 46 ~~al~EIr~~Qkst--~lli~k~pF~-----rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~ 103 (136)
..++|.+..|=+-. .++.--..+- .=++||...+.-+.-+...+|..|++++..+|..
T Consensus 79 ~~ClRD~~~~LR~itYa~lagd~~~L~e~~L~glreiy~algvp~~~~~~~~~~mk~~~~~~l~~ 143 (161)
T 1kn1_B 79 AACIRDLDYYLRYATYAMLAGDPSILDERVLNGLKETYNSLGVPIGATIQAIQAMKEVTSGLVGP 143 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSTHHHHHHTSTTHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcCH
Confidence 45777777765532 2232222222 2358888877778888999999999999887765
No 61
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=22.61 E-value=62 Score=22.34 Aligned_cols=47 Identities=15% Similarity=0.159 Sum_probs=29.1
Q ss_pred ccccccHHHHHHHHHHHHHHhhhhhhhhhHhhhhcCccccCcccHHHH
Q 032668 81 TDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMPKDIQLA 128 (136)
Q Consensus 81 ~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~kDiqLa 128 (136)
.+..++.+++..|.+.++-..-.+..-...+...++. +|+..|++-+
T Consensus 201 ~~~~~~~~~~~~l~~~~~G~~~~~~~~~~~~~~~~~~-~i~~~~v~~~ 247 (250)
T 1njg_A 201 EHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG-QVSTQAVSAM 247 (250)
T ss_dssp TTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHTTTTS-SBCHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhccCc-eecHHHHHHH
Confidence 3567888888888888764443333333333444444 6877887654
No 62
>1kn1_A Allophycocyanin; helix-turn-helix, electron transport; HET: CYC; 2.20A {Porphyra yezoensis} SCOP: a.1.1.3 PDB: 3dbj_A* 2v8a_A* 1b33_A* 2vjt_A* 1all_A*
Probab=22.22 E-value=73 Score=23.18 Aligned_cols=58 Identities=19% Similarity=0.292 Sum_probs=39.6
Q ss_pred chhhHHHHhhhhch--hhhhhccchhH-----HHHHHHhhhcccccccHHHHHHHHHHHHHHhhh
Q 032668 46 TVALREIRKYQKST--ELLIRKLPFQR-----LVREIAQDFKTDLRFQSHAVLALQEAAEAYLVG 103 (136)
Q Consensus 46 ~~al~EIr~~Qkst--~lli~k~pF~r-----lVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~ 103 (136)
..++|.+..|=+-. .++.--..+-+ =++||...+.-+.-+...+|..|++++..+|..
T Consensus 78 ~~ClRD~~~~LRyitYa~lagd~~~L~e~~L~glreiy~algvp~~~~~~~~~~mk~~~~~~l~~ 142 (160)
T 1kn1_A 78 ATCLRDLDYYLRLVTYGIVSGDVTPIEEIGLVGVREMYKSLGTPISAVAEGVKCMKSVASSLLSG 142 (160)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSHHHHHHHTTTHHHHHHHHTCCHHHHHHHHHHHHHHHHHSSCH
T ss_pred HHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHcCH
Confidence 46778877775532 23333333322 348888888888889999999999998877765
No 63
>2vml_A Phycocyanin alpha chain; photosynthesis, light-harvesting, electron transport, transp chromophore, bIle pigment, phycobilisome; HET: CYC; 2.40A {Gloeobacter violaceus} PDB: 2vjr_A*
Probab=22.21 E-value=85 Score=22.83 Aligned_cols=63 Identities=16% Similarity=0.188 Sum_probs=39.4
Q ss_pred chhhHHHHhhhhch--hhhhhccchhH-----HHHHHHhhhcccccccHHHHHHHHHHHHHHhhhhhhhhhH
Q 032668 46 TVALREIRKYQKST--ELLIRKLPFQR-----LVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNL 110 (136)
Q Consensus 46 ~~al~EIr~~Qkst--~lli~k~pF~r-----lVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l 110 (136)
..++|.+..|=+-. .++.--..+-+ =++||...+.-+.-+...|+..|++++..+|.. |++.+
T Consensus 80 ~~ClRD~~~~LRyitYa~lagd~~~L~e~~L~glreiy~algvp~~~~~~a~~~mk~~~~~~l~~--~~~~~ 149 (162)
T 2vml_A 80 AKCARDISHYLRFITYSLVAGGTGPLDDYIVAGLREVNRTFNLSPSWYIEALKHIKGKVGSQLSG--QPLTE 149 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSHHHHHHTTTTHHHHHHHTTCCHHHHHHHHHHHHHHHHHHCCH--HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHcCH--HHHHH
Confidence 45677777665422 22322222222 247888777777778888999999988887766 44443
No 64
>3axj_B TRAX, translin associated factor X, isoform B; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 3riu_C
Probab=20.79 E-value=1.9e+02 Score=23.01 Aligned_cols=23 Identities=30% Similarity=0.327 Sum_probs=16.6
Q ss_pred ccccHHHHHHHHHHHHHHhhhhh
Q 032668 83 LRFQSHAVLALQEAAEAYLVGLF 105 (136)
Q Consensus 83 ~r~~~~Al~aLQeaaE~~Lv~lf 105 (136)
++|...-=.+|||.+|++.-.-|
T Consensus 111 y~y~~~~s~~lQE~VEA~~f~~y 133 (298)
T 3axj_B 111 YQFRSSYSPGLQEFIQAYTYMEY 133 (298)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHH
Confidence 56744444899999998766555
No 65
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=20.26 E-value=1.3e+02 Score=20.41 Aligned_cols=47 Identities=9% Similarity=-0.015 Sum_probs=30.7
Q ss_pred cccccHHHHHHHHHHHHHHhhhhhhhhhHhhhhcCccccCcccHHHHHH
Q 032668 82 DLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMPKDIQLARR 130 (136)
Q Consensus 82 ~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~kDiqLa~r 130 (136)
+..++.+++..|.+.+.-.+-.+......++..+ -+|+..|++-+..
T Consensus 178 ~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~~--~~I~~~~v~~~~~ 224 (226)
T 2chg_A 178 GVKITEDGLEALIYISGGDFRKAINALQGAAAIG--EVVDADTIYQITA 224 (226)
T ss_dssp TCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--SCBCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--ceecHHHHHHHhc
Confidence 4568888888888777655544444444555555 3677888876653
Done!