Query 032671
Match_columns 136
No_of_seqs 117 out of 1109
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 04:27:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032671.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032671hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01807 GDX_N ubiquitin-like d 99.8 7.7E-19 1.7E-23 116.9 7.8 73 10-90 1-73 (74)
2 cd01791 Ubl5 UBL5 ubiquitin-li 99.8 7.9E-19 1.7E-23 117.8 7.6 70 9-86 1-70 (73)
3 cd01797 NIRF_N amino-terminal 99.8 1.7E-18 3.7E-23 117.3 7.4 76 10-92 1-77 (78)
4 cd01805 RAD23_N Ubiquitin-like 99.7 6.4E-18 1.4E-22 112.4 8.5 71 10-88 1-73 (77)
5 cd01804 midnolin_N Ubiquitin-l 99.7 5.2E-18 1.1E-22 114.6 7.9 71 9-88 1-71 (78)
6 cd01790 Herp_N Homocysteine-re 99.7 1.2E-17 2.6E-22 114.1 7.1 72 9-87 1-78 (79)
7 cd01802 AN1_N ubiquitin-like d 99.7 4.5E-17 9.8E-22 115.8 8.7 73 7-87 25-97 (103)
8 cd01793 Fubi Fubi ubiquitin-li 99.7 4.2E-17 9E-22 108.6 8.0 67 10-86 1-67 (74)
9 PTZ00044 ubiquitin; Provisiona 99.7 6.5E-17 1.4E-21 107.4 7.7 71 10-88 1-71 (76)
10 cd01792 ISG15_repeat1 ISG15 ub 99.7 5.3E-17 1.1E-21 109.8 7.3 72 10-89 3-76 (80)
11 cd01794 DC_UbP_C dendritic cel 99.7 4.2E-17 9.1E-22 108.4 6.7 69 12-88 1-69 (70)
12 cd01813 UBP_N UBP ubiquitin pr 99.7 5.7E-17 1.2E-21 108.8 6.9 70 10-88 1-73 (74)
13 cd01806 Nedd8 Nebb8-like ubiq 99.7 1.6E-16 3.4E-21 104.8 8.3 71 10-88 1-71 (76)
14 cd01809 Scythe_N Ubiquitin-lik 99.7 1.5E-16 3.1E-21 103.9 7.9 70 10-87 1-70 (72)
15 cd01810 ISG15_repeat2 ISG15 ub 99.7 8.6E-17 1.9E-21 107.1 6.8 68 12-87 1-68 (74)
16 cd01812 BAG1_N Ubiquitin-like 99.7 9.3E-17 2E-21 104.9 6.8 70 10-88 1-70 (71)
17 cd01808 hPLIC_N Ubiquitin-like 99.7 1.5E-16 3.3E-21 105.0 7.5 68 10-86 1-68 (71)
18 cd01798 parkin_N amino-termina 99.7 1.2E-16 2.5E-21 105.2 6.6 68 12-87 1-68 (70)
19 cd01803 Ubiquitin Ubiquitin. U 99.7 1.9E-16 4E-21 104.4 7.5 71 10-88 1-71 (76)
20 PF00240 ubiquitin: Ubiquitin 99.7 1.2E-16 2.6E-21 104.0 6.3 68 15-90 1-68 (69)
21 cd01796 DDI1_N DNA damage indu 99.7 2.7E-16 6E-21 104.3 6.5 67 12-86 1-69 (71)
22 TIGR00601 rad23 UV excision re 99.6 2.5E-15 5.4E-20 127.8 8.3 74 10-91 1-78 (378)
23 smart00213 UBQ Ubiquitin homol 99.6 1.1E-14 2.4E-19 92.2 6.5 64 10-82 1-64 (64)
24 cd01800 SF3a120_C Ubiquitin-li 99.5 1.5E-14 3.3E-19 96.8 6.6 62 22-90 9-70 (76)
25 KOG0010 Ubiquitin-like protein 99.5 1.1E-14 2.5E-19 126.2 6.9 72 9-89 15-87 (493)
26 cd01763 Sumo Small ubiquitin-r 99.5 7.8E-14 1.7E-18 95.9 9.0 75 4-86 6-80 (87)
27 cd01815 BMSC_UbP_N Ubiquitin-l 99.5 5.9E-14 1.3E-18 95.1 5.0 54 27-87 16-73 (75)
28 KOG0005 Ubiquitin-like protein 99.4 9E-14 1.9E-18 90.6 3.7 68 10-85 1-68 (70)
29 cd01814 NTGP5 Ubiquitin-like N 99.4 5.9E-13 1.3E-17 96.3 6.7 82 7-93 2-94 (113)
30 cd01799 Hoil1_N Ubiquitin-like 99.4 8.4E-13 1.8E-17 88.9 6.9 67 11-86 4-72 (75)
31 KOG0011 Nucleotide excision re 99.4 4.6E-13 1E-17 111.6 6.9 74 10-91 1-77 (340)
32 cd01769 UBL Ubiquitin-like dom 99.4 1E-12 2.2E-17 84.1 6.9 67 14-88 2-68 (69)
33 KOG0004 Ubiquitin/40S ribosoma 99.3 1.3E-12 2.9E-17 98.9 4.0 70 10-87 1-71 (156)
34 KOG0003 Ubiquitin/60s ribosoma 99.3 9E-13 2E-17 94.9 1.1 69 10-86 1-70 (128)
35 cd01789 Alp11_N Ubiquitin-like 99.2 8.1E-11 1.8E-15 80.6 8.5 72 9-87 1-79 (84)
36 PF11976 Rad60-SLD: Ubiquitin- 99.2 5E-11 1.1E-15 78.2 5.6 68 10-85 1-69 (72)
37 cd01795 USP48_C USP ubiquitin- 99.1 1.1E-10 2.5E-15 83.0 6.1 60 23-88 17-76 (107)
38 cd01801 Tsc13_N Ubiquitin-like 99.1 1.4E-10 3E-15 77.9 6.1 69 11-87 2-75 (77)
39 PLN02560 enoyl-CoA reductase 99.1 2.8E-10 6E-15 94.7 7.8 73 10-89 1-83 (308)
40 PF14560 Ubiquitin_2: Ubiquiti 98.9 3.1E-09 6.7E-14 72.6 6.8 77 9-88 1-82 (87)
41 KOG4248 Ubiquitin-like protein 98.9 1.5E-09 3.3E-14 101.0 6.6 79 11-99 4-82 (1143)
42 PF13881 Rad60-SLD_2: Ubiquiti 98.8 4.7E-08 1E-12 70.6 10.3 71 8-83 1-76 (111)
43 KOG1872 Ubiquitin-specific pro 98.8 1.8E-08 3.9E-13 87.5 7.5 73 9-90 3-76 (473)
44 KOG0001 Ubiquitin and ubiquiti 98.7 1.9E-07 4.2E-12 58.6 8.6 69 12-88 2-70 (75)
45 PF11543 UN_NPL4: Nuclear pore 98.6 6.1E-08 1.3E-12 66.1 5.2 75 8-87 3-78 (80)
46 cd01788 ElonginB Ubiquitin-lik 98.5 2.4E-07 5.2E-12 67.4 5.6 72 10-88 1-80 (119)
47 cd00196 UBQ Ubiquitin-like pro 98.5 7E-07 1.5E-11 52.9 6.8 62 18-87 6-67 (69)
48 KOG0006 E3 ubiquitin-protein l 98.1 1.2E-05 2.5E-10 67.9 6.9 65 19-90 12-77 (446)
49 PF10302 DUF2407: DUF2407 ubiq 97.9 5.5E-05 1.2E-09 53.4 6.3 56 12-67 3-60 (97)
50 KOG1769 Ubiquitin-like protein 97.6 0.00054 1.2E-08 48.7 8.2 72 8-87 19-91 (99)
51 KOG4583 Membrane-associated ER 97.5 6.1E-05 1.3E-09 63.8 2.4 81 6-91 6-90 (391)
52 cd01811 OASL_repeat1 2'-5' oli 97.5 0.0011 2.3E-08 45.2 7.8 69 10-87 1-74 (80)
53 KOG3493 Ubiquitin-like protein 97.4 7.3E-05 1.6E-09 49.6 1.1 67 10-84 2-68 (73)
54 PF00789 UBX: UBX domain; Int 97.3 0.002 4.3E-08 42.9 8.0 78 4-87 1-81 (82)
55 KOG4495 RNA polymerase II tran 97.3 0.00047 1E-08 49.1 4.7 63 12-81 3-67 (110)
56 PF08817 YukD: WXG100 protein 97.3 0.00082 1.8E-08 45.0 5.3 69 10-86 3-78 (79)
57 KOG3206 Alpha-tubulin folding 97.0 0.0025 5.5E-08 51.0 6.4 110 10-125 2-119 (234)
58 KOG1639 Steroid reductase requ 96.8 0.002 4.3E-08 53.0 4.9 74 10-89 1-79 (297)
59 smart00166 UBX Domain present 96.8 0.016 3.5E-07 38.7 8.5 75 8-87 3-79 (80)
60 cd01767 UBX UBX (ubiquitin reg 96.7 0.029 6.2E-07 37.1 8.9 72 9-87 2-75 (77)
61 COG5417 Uncharacterized small 96.6 0.013 2.7E-07 40.0 6.8 69 10-84 7-78 (81)
62 cd01774 Faf1_like2_UBX Faf1 ik 96.3 0.062 1.3E-06 36.8 9.1 76 7-86 2-82 (85)
63 KOG0013 Uncharacterized conser 96.0 0.013 2.7E-07 47.1 5.0 55 23-84 159-213 (231)
64 cd01772 SAKS1_UBX SAKS1-like U 96.0 0.092 2E-06 35.2 8.5 73 8-86 3-77 (79)
65 KOG3249 Uncharacterized conser 96.0 0.0051 1.1E-07 47.5 2.4 81 33-125 8-88 (181)
66 cd01770 p47_UBX p47-like ubiqu 95.9 0.076 1.7E-06 35.8 7.8 70 8-85 3-75 (79)
67 cd01771 Faf1_UBX Faf1 UBX doma 95.8 0.16 3.5E-06 34.4 8.9 74 7-86 2-77 (80)
68 PF11470 TUG-UBL1: GLUT4 regul 95.7 0.028 6.1E-07 36.9 4.9 55 23-84 9-63 (65)
69 COG5227 SMT3 Ubiquitin-like pr 94.9 0.13 2.8E-06 36.4 6.3 66 11-84 24-91 (103)
70 cd01773 Faf1_like1_UBX Faf1 ik 94.8 0.53 1.2E-05 32.3 9.0 74 7-86 3-78 (82)
71 PF13019 Telomere_Sde2: Telome 93.9 0.28 6E-06 37.8 6.8 66 10-82 1-73 (162)
72 PRK06437 hypothetical protein; 93.3 0.83 1.8E-05 29.7 7.4 48 23-86 13-61 (67)
73 PLN02799 Molybdopterin synthas 92.4 0.65 1.4E-05 30.8 6.0 65 10-86 2-75 (82)
74 KOG0012 DNA damage inducible p 92.3 0.2 4.3E-06 43.1 4.1 62 23-89 15-76 (380)
75 KOG2982 Uncharacterized conser 91.9 0.6 1.3E-05 40.1 6.5 63 24-88 351-416 (418)
76 PRK08364 sulfur carrier protei 91.7 2.1 4.5E-05 27.8 7.8 60 9-86 4-64 (70)
77 PF15044 CLU_N: Mitochondrial 91.7 0.49 1.1E-05 31.7 4.8 58 27-90 1-59 (76)
78 cd06406 PB1_P67 A PB1 domain i 91.0 0.91 2E-05 31.1 5.6 38 22-61 12-49 (80)
79 smart00666 PB1 PB1 domain. Pho 90.8 0.84 1.8E-05 29.8 5.3 45 10-58 2-46 (81)
80 cd06409 PB1_MUG70 The MUG70 pr 90.6 0.79 1.7E-05 31.7 5.1 44 11-57 2-48 (86)
81 PF14453 ThiS-like: ThiS-like 89.7 2.7 5.9E-05 27.0 6.7 46 24-87 9-54 (57)
82 cd00754 MoaD Ubiquitin domain 89.4 2.3 4.9E-05 27.5 6.4 53 23-87 18-74 (80)
83 PF00564 PB1: PB1 domain; Int 89.0 1 2.2E-05 29.5 4.6 48 9-59 1-48 (84)
84 PRK05863 sulfur carrier protei 89.0 2.2 4.7E-05 27.4 6.0 51 24-87 9-60 (65)
85 PRK01777 hypothetical protein; 88.2 5.5 0.00012 27.8 8.0 62 9-86 3-74 (95)
86 PRK07440 hypothetical protein; 88.0 4.2 9E-05 26.6 6.9 62 8-87 3-65 (70)
87 cd06407 PB1_NLP A PB1 domain i 87.2 1.6 3.4E-05 29.7 4.6 38 19-58 8-46 (82)
88 PF14732 UAE_UbL: Ubiquitin/SU 86.3 2 4.3E-05 29.4 4.8 60 25-86 2-66 (87)
89 PF10209 DUF2340: Uncharacteri 86.1 2.8 6E-05 30.9 5.7 62 26-87 21-107 (122)
90 COG2104 ThiS Sulfur transfer p 85.6 6.8 0.00015 25.8 6.9 52 24-87 11-63 (68)
91 TIGR01682 moaD molybdopterin c 85.3 7 0.00015 25.6 7.0 52 23-86 18-73 (80)
92 PRK05659 sulfur carrier protei 85.1 5.5 0.00012 25.1 6.2 52 24-87 9-61 (66)
93 cd00565 ThiS ThiaminS ubiquiti 83.5 5.1 0.00011 25.4 5.5 51 24-86 8-59 (65)
94 TIGR01683 thiS thiamine biosyn 82.6 5.7 0.00012 25.1 5.5 51 24-86 7-58 (64)
95 cd05992 PB1 The PB1 domain is 81.2 4.9 0.00011 26.0 4.9 45 11-59 2-47 (81)
96 KOG2086 Protein tyrosine phosp 79.0 7.3 0.00016 33.8 6.4 70 7-82 303-374 (380)
97 PRK06083 sulfur carrier protei 78.6 12 0.00025 25.6 6.2 52 24-87 27-79 (84)
98 PF14836 Ubiquitin_3: Ubiquiti 77.1 13 0.00027 25.9 6.1 60 23-89 16-80 (88)
99 PRK07696 sulfur carrier protei 76.0 17 0.00038 23.3 6.3 51 25-87 10-62 (67)
100 PF12754 Blt1: Cell-cycle cont 75.8 0.87 1.9E-05 38.4 0.0 60 7-67 76-153 (309)
101 TIGR02958 sec_mycoba_snm4 secr 74.7 18 0.00038 31.8 7.8 83 10-101 3-92 (452)
102 PF02597 ThiS: ThiS family; I 74.4 10 0.00022 24.1 4.9 56 23-87 14-71 (77)
103 cd06408 PB1_NoxR The PB1 domai 73.1 17 0.00037 25.1 5.9 46 12-60 3-48 (86)
104 smart00295 B41 Band 4.1 homolo 73.0 11 0.00023 28.1 5.4 47 8-57 2-49 (207)
105 TIGR01687 moaD_arch MoaD famil 72.9 24 0.00052 23.3 7.8 54 23-87 18-82 (88)
106 cd06396 PB1_NBR1 The PB1 domai 72.3 9.7 0.00021 26.1 4.5 35 13-49 2-38 (81)
107 cd06411 PB1_p51 The PB1 domain 71.7 7.3 0.00016 26.6 3.8 36 23-60 9-44 (78)
108 PF08337 Plexin_cytopl: Plexin 71.6 15 0.00032 33.4 6.7 80 8-87 188-288 (539)
109 PF08783 DWNN: DWNN domain; I 71.2 9.6 0.00021 25.6 4.2 39 13-51 2-41 (74)
110 PRK08053 sulfur carrier protei 70.7 24 0.00052 22.4 6.5 51 24-86 9-60 (66)
111 PRK06488 sulfur carrier protei 68.2 27 0.00059 21.9 6.1 49 25-86 10-59 (65)
112 cd06398 PB1_Joka2 The PB1 doma 67.6 15 0.00033 25.4 4.7 35 23-59 12-52 (91)
113 KOG4250 TANK binding protein k 66.2 26 0.00057 32.9 7.2 50 11-62 315-364 (732)
114 PF14451 Ub-Mut7C: Mut7-C ubiq 65.1 33 0.00071 23.2 5.9 50 23-88 25-75 (81)
115 PRK06944 sulfur carrier protei 64.2 32 0.00069 21.3 6.5 50 24-86 9-59 (65)
116 KOG2561 Adaptor protein NUB1, 64.1 2.2 4.9E-05 38.1 0.0 73 10-89 36-111 (568)
117 PF11620 GABP-alpha: GA-bindin 64.0 18 0.00039 25.2 4.5 68 24-98 6-75 (88)
118 PRK11840 bifunctional sulfur c 63.4 29 0.00064 29.6 6.6 52 24-87 9-61 (326)
119 PF11834 DUF3354: Domain of un 63.1 8.7 0.00019 25.4 2.7 47 25-86 22-68 (69)
120 cd01760 RBD Ubiquitin-like dom 62.4 28 0.00061 23.0 5.1 44 13-59 3-46 (72)
121 cd06410 PB1_UP2 Uncharacterize 60.1 30 0.00065 24.2 5.2 40 14-57 17-56 (97)
122 PF00794 PI3K_rbd: PI3-kinase 58.0 32 0.00069 23.7 5.0 36 7-42 14-49 (106)
123 COG5100 NPL4 Nuclear pore prot 56.9 74 0.0016 28.5 8.0 72 10-88 1-78 (571)
124 PRK11130 moaD molybdopterin sy 54.9 58 0.0013 21.3 6.9 50 25-86 19-74 (81)
125 smart00455 RBD Raf-like Ras-bi 54.0 49 0.0011 21.6 5.1 43 14-59 4-46 (70)
126 PF14533 USP7_C2: Ubiquitin-sp 51.7 57 0.0012 25.5 6.1 43 23-67 36-86 (213)
127 cd01666 TGS_DRG_C TGS_DRG_C: 51.2 47 0.001 22.1 4.8 33 10-42 2-36 (75)
128 PF12436 USP7_ICP0_bdg: ICP0-b 51.0 37 0.0008 27.3 5.0 46 9-56 176-223 (249)
129 PF09379 FERM_N: FERM N-termin 47.7 18 0.00039 23.2 2.3 41 14-57 1-42 (80)
130 cd01768 RA RA (Ras-associating 46.7 76 0.0017 20.6 5.3 32 23-56 15-48 (87)
131 PF02192 PI3K_p85B: PI3-kinase 46.3 20 0.00043 24.3 2.3 20 23-42 2-21 (78)
132 smart00144 PI3K_rbd PI3-kinase 45.7 62 0.0014 22.7 5.0 36 7-42 15-50 (108)
133 PF03671 Ufm1: Ubiquitin fold 44.8 97 0.0021 21.0 6.0 62 16-84 10-73 (76)
134 cd01775 CYR1_RA Ubiquitin doma 44.8 1.1E+02 0.0023 21.7 5.9 45 12-59 5-51 (97)
135 PF00788 RA: Ras association ( 44.0 86 0.0019 20.2 5.4 46 9-56 4-52 (93)
136 cd01787 GRB7_RA RA (RAS-associ 43.8 71 0.0015 22.1 4.8 39 11-52 4-42 (85)
137 KOG2013 SMT3/SUMO-activating c 42.5 52 0.0011 30.0 4.9 62 23-87 445-509 (603)
138 cd01776 Rin1_RA Ubiquitin doma 40.1 1E+02 0.0023 21.4 5.1 32 23-56 16-48 (87)
139 PF07929 PRiA4_ORF3: Plasmid p 39.0 71 0.0015 24.0 4.7 42 9-52 4-47 (179)
140 cd06397 PB1_UP1 Uncharacterize 39.0 83 0.0018 21.7 4.5 44 11-58 2-45 (82)
141 smart00143 PI3K_p85B PI3-kinas 38.0 30 0.00064 23.5 2.2 20 23-42 2-21 (78)
142 PF02824 TGS: TGS domain; Int 37.9 57 0.0012 20.3 3.4 56 12-84 1-56 (60)
143 PF07001 BAT2_N: BAT2 N-termin 36.5 30 0.00065 27.2 2.3 62 56-122 26-88 (189)
144 smart00314 RA Ras association 36.4 1.2E+02 0.0026 19.9 5.0 32 23-56 18-51 (90)
145 PTZ00380 microtubule-associate 36.3 38 0.00083 24.9 2.7 35 26-63 46-80 (121)
146 KOG2507 Ubiquitin regulatory p 35.6 80 0.0017 28.3 5.0 82 8-94 313-396 (506)
147 PRK10113 cell division modulat 34.6 16 0.00034 24.6 0.4 15 111-125 58-72 (80)
148 KOG4361 BCL2-associated athano 34.1 27 0.00059 30.0 1.8 73 9-89 61-138 (344)
149 PF02505 MCR_D: Methyl-coenzym 33.9 97 0.0021 23.7 4.6 54 8-76 66-120 (153)
150 KOG2689 Predicted ubiquitin re 33.7 1.6E+02 0.0035 24.8 6.2 75 7-86 208-284 (290)
151 PF11069 DUF2870: Protein of u 32.8 65 0.0014 22.9 3.3 33 54-91 3-36 (98)
152 PF00276 Ribosomal_L23: Riboso 32.8 62 0.0013 22.1 3.2 39 23-63 23-62 (91)
153 TIGR00691 spoT_relA (p)ppGpp s 32.0 2E+02 0.0043 26.8 7.2 65 10-91 360-424 (683)
154 PF12436 USP7_ICP0_bdg: ICP0-b 31.9 51 0.0011 26.4 3.0 76 7-89 66-152 (249)
155 PF02017 CIDE-N: CIDE-N domain 31.8 1.6E+02 0.0036 19.8 6.2 65 13-89 6-72 (78)
156 KOG0007 Splicing factor 3a, su 31.8 23 0.0005 29.8 1.0 41 23-65 295-336 (341)
157 PRK10872 relA (p)ppGpp synthet 31.8 1.9E+02 0.004 27.5 7.0 61 11-88 405-466 (743)
158 PF03607 DCX: Doublecortin; I 31.8 1.3E+02 0.0029 18.7 4.4 43 31-86 9-53 (60)
159 PF12911 OppC_N: N-terminal TM 31.7 32 0.00069 20.8 1.4 17 117-133 1-17 (56)
160 PF03658 Ub-RnfH: RnfH family 30.9 1.8E+02 0.0038 19.9 6.6 66 10-86 1-71 (84)
161 KOG3391 Transcriptional co-rep 30.6 47 0.001 25.2 2.4 25 67-91 114-139 (151)
162 PF09014 Sushi_2: Beta-2-glyco 28.7 33 0.00071 23.8 1.2 61 45-116 3-64 (85)
163 PRK05738 rplW 50S ribosomal pr 28.1 1.5E+02 0.0032 20.3 4.5 38 23-62 23-61 (92)
164 PF08825 E2_bind: E2 binding d 27.8 99 0.0021 21.0 3.5 58 25-86 1-68 (84)
165 cd01764 Urm1 Urm1-like ubuitin 27.8 1.4E+02 0.0029 20.5 4.2 56 26-87 24-88 (94)
166 KOG3439 Protein conjugation fa 26.4 2.6E+02 0.0056 20.5 5.5 73 8-82 29-104 (116)
167 cd01782 AF6_RA_repeat1 Ubiquit 26.4 1.8E+02 0.0039 21.2 4.7 41 7-49 21-62 (112)
168 cd06404 PB1_aPKC PB1 domain is 26.0 1.3E+02 0.0028 20.7 3.8 43 13-57 2-45 (83)
169 PF10729 CedA: Cell division a 25.4 19 0.00041 24.2 -0.4 15 111-125 58-72 (80)
170 TIGR03260 met_CoM_red_D methyl 24.9 1.5E+02 0.0033 22.6 4.3 54 8-76 65-118 (150)
171 PF11305 DUF3107: Protein of u 24.2 1.8E+02 0.0038 19.6 4.1 31 10-42 1-31 (74)
172 PF02991 Atg8: Autophagy prote 24.0 1.3E+02 0.0028 21.2 3.6 37 25-63 37-74 (104)
173 cd01612 APG12_C Ubiquitin-like 23.7 2.4E+02 0.0053 19.1 6.2 50 10-61 2-54 (87)
174 PF09662 Phenyl_P_gamma: Pheny 23.5 1.2E+02 0.0026 20.9 3.2 48 6-62 16-63 (84)
175 PF10407 Cytokin_check_N: Cdc1 23.2 2.4E+02 0.0051 18.8 5.0 32 23-56 5-37 (73)
176 cd02413 40S_S3_KH K homology R 22.4 2.5E+02 0.0054 18.7 5.5 43 8-55 30-72 (81)
177 PF14533 USP7_C2: Ubiquitin-sp 21.8 67 0.0015 25.1 2.0 36 23-60 135-175 (213)
178 cd01817 RGS12_RBD Ubiquitin do 21.5 2.6E+02 0.0057 18.7 5.4 43 16-61 6-48 (73)
179 KOG1364 Predicted ubiquitin re 21.1 1.3E+02 0.0028 26.0 3.7 70 10-84 278-350 (356)
180 smart00266 CAD Domains present 20.8 2.7E+02 0.006 18.6 6.6 54 25-88 14-69 (74)
181 COG1977 MoaD Molybdopterin con 20.6 1.4E+02 0.003 19.9 3.1 47 30-87 27-78 (84)
182 cd01783 DAGK_delta_RA Ubiquiti 20.4 3.2E+02 0.0069 19.3 5.1 47 7-55 2-52 (97)
183 PTZ00490 Ferredoxin superfamil 20.1 2E+02 0.0044 21.4 4.2 29 7-36 33-61 (143)
No 1
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.78 E-value=7.7e-19 Score=116.87 Aligned_cols=73 Identities=29% Similarity=0.404 Sum_probs=67.1
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEec
Q 032671 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAVK 89 (136)
Q Consensus 10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~~~ 89 (136)
|+|+||+..|+. +.++|+++.||++||++|++ ++|+|+++|||+|+|+.|.|+.+ |++|||++|++|.++..
T Consensus 1 m~i~vk~~~G~~-~~l~v~~~~tV~~lK~~i~~--~~gi~~~~q~L~~~G~~L~d~~~-----L~~~~i~~~~~l~l~~~ 72 (74)
T cd01807 1 MFLTVKLLQGRE-CSLQVSEKESVSTLKKLVSE--HLNVPEEQQRLLFKGKALADDKR-----LSDYSIGPNAKLNLVVR 72 (74)
T ss_pred CEEEEEeCCCCE-EEEEECCCCcHHHHHHHHHH--HHCCCHHHeEEEECCEECCCCCC-----HHHCCCCCCCEEEEEEc
Confidence 789999999975 88999999999999999999 99999999999999999999988 99999999999955544
Q ss_pred C
Q 032671 90 P 90 (136)
Q Consensus 90 p 90 (136)
|
T Consensus 73 ~ 73 (74)
T cd01807 73 P 73 (74)
T ss_pred C
Confidence 3
No 2
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.78 E-value=7.9e-19 Score=117.83 Aligned_cols=70 Identities=17% Similarity=0.146 Sum_probs=65.3
Q ss_pred ceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032671 9 SVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA 86 (136)
Q Consensus 9 ~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv 86 (136)
+|+|+||+..|+. +.+++++++||++||++|++ ..++|+++|||+|+|+.|+|+.+ |++|||++|++|++
T Consensus 1 ~~~i~vkt~~Gk~-~~~~v~~~~TV~~LK~~I~~--~~~~~~~~qrLi~~Gk~L~D~~t-----L~~ygi~~~stv~l 70 (73)
T cd01791 1 MIEVVCNDRLGKK-VRVKCNPDDTIGDLKKLIAA--QTGTRPEKIVLKKWYTIFKDHIS-----LGDYEIHDGMNLEL 70 (73)
T ss_pred CEEEEEECCCCCE-EEEEeCCCCcHHHHHHHHHH--HhCCChHHEEEEeCCcCCCCCCC-----HHHcCCCCCCEEEE
Confidence 5899999998866 88999999999999999998 88999999999999999999888 99999999999944
No 3
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.76 E-value=1.7e-18 Score=117.33 Aligned_cols=76 Identities=25% Similarity=0.337 Sum_probs=67.5
Q ss_pred eEEEEEeCCCCCcEEEE-ecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEe
Q 032671 10 VEITVKTIGPAPPSRLS-VSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAV 88 (136)
Q Consensus 10 m~I~VKt~~~~~~~~v~-v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~~ 88 (136)
|+|+||+.+|...+.++ ++++.||++||++|++ .+|+|+++|||+|+||.|+|+.+ |++|||++|++|.+..
T Consensus 1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~--~~gi~~~~QrLi~~Gk~L~D~~t-----L~~y~i~~~~~i~l~~ 73 (78)
T cd01797 1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQE--LFNVEPECQRLFYRGKQMEDGHT-----LFDYNVGLNDIIQLLV 73 (78)
T ss_pred CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHH--HhCCCHHHeEEEeCCEECCCCCC-----HHHcCCCCCCEEEEEE
Confidence 79999999997534674 7889999999999999 99999999999999999999999 9999999999996665
Q ss_pred cCCC
Q 032671 89 KPKP 92 (136)
Q Consensus 89 ~p~~ 92 (136)
.+.|
T Consensus 74 ~~~~ 77 (78)
T cd01797 74 RQDP 77 (78)
T ss_pred ecCC
Confidence 5443
No 4
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.75 E-value=6.4e-18 Score=112.35 Aligned_cols=71 Identities=25% Similarity=0.379 Sum_probs=65.6
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCC--CCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 032671 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHL--PIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAA 87 (136)
Q Consensus 10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi--~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~ 87 (136)
|+|+||+..+.. +.++++++.||.+||++|++ .+|+ |+++|||+|+|+.|.|+.+ |++|||++|++|++.
T Consensus 1 m~i~vk~~~g~~-~~l~v~~~~TV~~lK~~i~~--~~~i~~~~~~q~L~~~G~~L~d~~~-----L~~~~i~~~~~i~~~ 72 (77)
T cd01805 1 MKITFKTLKQQT-FPIEVDPDDTVAELKEKIEE--EKGCDYPPEQQKLIYSGKILKDDTT-----LEEYKIDEKDFVVVM 72 (77)
T ss_pred CEEEEEeCCCCE-EEEEECCCCcHHHHHHHHHH--hhCCCCChhHeEEEECCEEccCCCC-----HHHcCCCCCCEEEEE
Confidence 789999999965 88999999999999999999 8998 9999999999999998888 999999999999544
Q ss_pred e
Q 032671 88 V 88 (136)
Q Consensus 88 ~ 88 (136)
.
T Consensus 73 ~ 73 (77)
T cd01805 73 V 73 (77)
T ss_pred E
Confidence 4
No 5
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.75 E-value=5.2e-18 Score=114.57 Aligned_cols=71 Identities=23% Similarity=0.279 Sum_probs=65.4
Q ss_pred ceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEe
Q 032671 9 SVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAV 88 (136)
Q Consensus 9 ~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~~ 88 (136)
.|+|+||+..|+. +.+++++++||++||++|++ ..++++++|||+|+|+.|+|+ + |++|||++|++|+++.
T Consensus 1 ~m~I~Vk~~~G~~-~~l~v~~~~TV~~LK~~I~~--~~~~~~~~qrL~~~Gk~L~d~-~-----L~~~gi~~~~~i~l~~ 71 (78)
T cd01804 1 PMNLNIHSTTGTR-FDLSVPPDETVEGLKKRISQ--RLKVPKERLALLHRETRLSSG-K-----LQDLGLGDGSKLTLVP 71 (78)
T ss_pred CeEEEEEECCCCE-EEEEECCcCHHHHHHHHHHH--HhCCChHHEEEEECCcCCCCC-c-----HHHcCCCCCCEEEEEe
Confidence 4899999999876 88999999999999999998 889999999999999999987 8 9999999999995443
No 6
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.73 E-value=1.2e-17 Score=114.07 Aligned_cols=72 Identities=17% Similarity=0.182 Sum_probs=61.9
Q ss_pred ceEEEEEeCCCCC-cEEEEecCCCcHHHHHHHHHhccCC--CCCCCceEEEecCeecCCCCCCCCCCccccC--CCCCCE
Q 032671 9 SVEITVKTIGPAP-PSRLSVSSPIKVRDLRKLIATSSAN--HLPIENLRLVFRGKVLDDTQDDDDRDDVYLQ--LSNGDS 83 (136)
Q Consensus 9 ~m~I~VKt~~~~~-~~~v~v~~~~TV~eLK~~Ia~~~~~--gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~--I~dG~t 83 (136)
.|+|+||+++++. .+.+++++++||++||++|++ .. .+++++|||||+||+|+|+.+ |++|+ +++|++
T Consensus 1 ~i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~--~~~~~~~~~~QrLIy~GKiLkD~~t-----L~~~~~~~~~~~t 73 (79)
T cd01790 1 PVTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSR--VYPSKPLEQDQRLIYSGKLLPDHLK-----LRDVLRKQDEYHM 73 (79)
T ss_pred CeEEEEECCCCCeEEEEEecCCcChHHHHHHHHHH--hcCCCCChhHeEEEEcCeeccchhh-----HHHHhhcccCCce
Confidence 4899999999976 234555899999999999998 54 467899999999999999988 99996 999999
Q ss_pred E-EEE
Q 032671 84 V-IAA 87 (136)
Q Consensus 84 I-lv~ 87 (136)
| +|+
T Consensus 74 iHLV~ 78 (79)
T cd01790 74 VHLVC 78 (79)
T ss_pred EEEEe
Confidence 9 665
No 7
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.71 E-value=4.5e-17 Score=115.85 Aligned_cols=73 Identities=18% Similarity=0.220 Sum_probs=67.9
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032671 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA 86 (136)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv 86 (136)
.++|+|+||+.+|.. +.++++++.||.+||++|++ ..|+|+++|||+|+|+.|+|+.+ |++|+|++|++|.+
T Consensus 25 ~~~M~I~Vk~l~G~~-~~leV~~~~TV~~lK~kI~~--~~gip~~~QrLi~~Gk~L~D~~t-----L~dy~I~~~stL~l 96 (103)
T cd01802 25 YDTMELFIETLTGTC-FELRVSPFETVISVKAKIQR--LEGIPVAQQHLIWNNMELEDEYC-----LNDYNISEGCTLKL 96 (103)
T ss_pred CCCEEEEEEcCCCCE-EEEEeCCCCcHHHHHHHHHH--HhCCChHHEEEEECCEECCCCCc-----HHHcCCCCCCEEEE
Confidence 467999999999976 88999999999999999998 99999999999999999999988 99999999999944
Q ss_pred E
Q 032671 87 A 87 (136)
Q Consensus 87 ~ 87 (136)
.
T Consensus 97 ~ 97 (103)
T cd01802 97 V 97 (103)
T ss_pred E
Confidence 3
No 8
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.71 E-value=4.2e-17 Score=108.60 Aligned_cols=67 Identities=16% Similarity=0.211 Sum_probs=61.9
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032671 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA 86 (136)
Q Consensus 10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv 86 (136)
|+|+||+. + .+.++++++.||++||++|++ ..|+|+++|||+|+|+.|.|+.+ |++|+|+++++|.+
T Consensus 1 mqi~vk~~--~-~~~l~v~~~~tV~~lK~~i~~--~~gip~~~q~Li~~Gk~L~D~~t-----L~~~~i~~~~tl~l 67 (74)
T cd01793 1 MQLFVRAQ--N-THTLEVTGQETVSDIKAHVAG--LEGIDVEDQVLLLAGVPLEDDAT-----LGQCGVEELCTLEV 67 (74)
T ss_pred CEEEEECC--C-EEEEEECCcCcHHHHHHHHHh--hhCCCHHHEEEEECCeECCCCCC-----HHHcCCCCCCEEEE
Confidence 78999984 3 378999999999999999999 99999999999999999999988 99999999999944
No 9
>PTZ00044 ubiquitin; Provisional
Probab=99.70 E-value=6.5e-17 Score=107.39 Aligned_cols=71 Identities=14% Similarity=0.328 Sum_probs=66.1
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEe
Q 032671 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAV 88 (136)
Q Consensus 10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~~ 88 (136)
|+|+||+.+|.. +.++++++.||++||++|++ .+|+|++.|||+|+|+.|.|+.+ |++|++++|++|.+..
T Consensus 1 m~i~vk~~~G~~-~~l~v~~~~tv~~lK~~i~~--~~gi~~~~q~L~~~g~~L~d~~~-----l~~~~i~~~~~i~l~~ 71 (76)
T PTZ00044 1 MQILIKTLTGKK-QSFNFEPDNTVQQVKMALQE--KEGIDVKQIRLIYSGKQMSDDLK-----LSDYKVVPGSTIHMVL 71 (76)
T ss_pred CEEEEEeCCCCE-EEEEECCCCcHHHHHHHHHH--HHCCCHHHeEEEECCEEccCCCc-----HHHcCCCCCCEEEEEE
Confidence 789999999976 88999999999999999999 99999999999999999998888 9999999999995444
No 10
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.70 E-value=5.3e-17 Score=109.81 Aligned_cols=72 Identities=26% Similarity=0.330 Sum_probs=66.2
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEE--EecCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 032671 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRL--VFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAA 87 (136)
Q Consensus 10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRL--I~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~ 87 (136)
|+|+||+.+|+. +.++++++.||.+||++|++ ..++|+++||| +|+|+.|+|+.+ |++|||++|++|++.
T Consensus 3 ~~i~Vk~~~G~~-~~~~v~~~~TV~~lK~~I~~--~~~i~~~~qrL~~~~~G~~L~D~~t-----L~~~gi~~gs~l~l~ 74 (80)
T cd01792 3 WDLKVKMLGGNE-FLVSLRDSMTVSELKQQIAQ--KIGVPAFQQRLAHLDSREVLQDGVP-----LVSQGLGPGSTVLLV 74 (80)
T ss_pred eEEEEEeCCCCE-EEEEcCCCCcHHHHHHHHHH--HhCCCHHHEEEEeccCCCCCCCCCC-----HHHcCCCCCCEEEEE
Confidence 899999999976 88999999999999999998 88999999999 999999999888 999999999999554
Q ss_pred ec
Q 032671 88 VK 89 (136)
Q Consensus 88 ~~ 89 (136)
.+
T Consensus 75 ~~ 76 (80)
T cd01792 75 VQ 76 (80)
T ss_pred EE
Confidence 43
No 11
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.70 E-value=4.2e-17 Score=108.41 Aligned_cols=69 Identities=26% Similarity=0.241 Sum_probs=63.5
Q ss_pred EEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEe
Q 032671 12 ITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAV 88 (136)
Q Consensus 12 I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~~ 88 (136)
++||..+|+. +.++++++.||++||++|++ ..|+|+++|||+|+|+.|+|+.+ |++|+|++|++|.+++
T Consensus 1 ~~vk~~~G~~-~~l~v~~~~TV~~lK~~I~~--~~gi~~~~q~Li~~G~~L~D~~~-----l~~~~i~~~~tv~~~~ 69 (70)
T cd01794 1 LKVRLSTGKD-VKLSVSSKDTVGQLKKQLQA--AEGVDPCCQRWFFSGKLLTDKTR-----LQETKIQKDYVVQVIV 69 (70)
T ss_pred CeEEcCCCCE-EEEEECCcChHHHHHHHHHH--HhCCCHHHeEEEECCeECCCCCC-----HHHcCCCCCCEEEEEe
Confidence 4789998976 89999999999999999998 89999999999999999999988 9999999999996543
No 12
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.69 E-value=5.7e-17 Score=108.85 Aligned_cols=70 Identities=24% Similarity=0.236 Sum_probs=63.8
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEe---cCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032671 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVF---RGKVLDDTQDDDDRDDVYLQLSNGDSVIA 86 (136)
Q Consensus 10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~---~GK~L~D~~t~d~~~L~~~~I~dG~tIlv 86 (136)
|+|+||+.+.. +.++++++.||++||++|++ .+++|+++|||+| +|+.++|+.+ |++|+|++|++|++
T Consensus 1 ~~i~vk~~g~~--~~v~v~~~~Tv~~lK~~i~~--~tgvp~~~QKLi~~~~~Gk~l~D~~~-----L~~~~i~~g~~i~l 71 (74)
T cd01813 1 VPVIVKWGGQE--YSVTTLSEDTVLDLKQFIKT--LTGVLPERQKLLGLKVKGKPAEDDVK-----ISALKLKPNTKIMM 71 (74)
T ss_pred CEEEEEECCEE--EEEEECCCCCHHHHHHHHHH--HHCCCHHHEEEEeecccCCcCCCCcC-----HHHcCCCCCCEEEE
Confidence 67899996553 78999999999999999999 9999999999996 9999999888 99999999999987
Q ss_pred Ee
Q 032671 87 AV 88 (136)
Q Consensus 87 ~~ 88 (136)
++
T Consensus 72 mG 73 (74)
T cd01813 72 MG 73 (74)
T ss_pred Ee
Confidence 65
No 13
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.69 E-value=1.6e-16 Score=104.76 Aligned_cols=71 Identities=20% Similarity=0.380 Sum_probs=65.6
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEe
Q 032671 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAV 88 (136)
Q Consensus 10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~~ 88 (136)
|+|+||+.+|+. +.++++++.||++||++|++ .+++|+++|||+|.|+.|.|+.+ |++|++++|++|.+..
T Consensus 1 m~i~v~~~~g~~-~~~~v~~~~tv~~lK~~i~~--~~g~~~~~qrL~~~g~~L~d~~t-----l~~~~i~~g~~i~l~~ 71 (76)
T cd01806 1 MLIKVKTLTGKE-IEIDIEPTDKVERIKERVEE--KEGIPPQQQRLIYSGKQMNDDKT-----AADYKLEGGSVLHLVL 71 (76)
T ss_pred CEEEEEeCCCCE-EEEEECCCCCHHHHHHHHhH--hhCCChhhEEEEECCeEccCCCC-----HHHcCCCCCCEEEEEE
Confidence 789999999976 88999999999999999998 89999999999999999998888 9999999999995443
No 14
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.68 E-value=1.5e-16 Score=103.94 Aligned_cols=70 Identities=30% Similarity=0.528 Sum_probs=65.2
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 032671 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAA 87 (136)
Q Consensus 10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~ 87 (136)
|+|+||+..+.. +.++++++.||.+||++|++ .+|+|+++|||+|+|+.|.|+.+ |++||+++|++|++.
T Consensus 1 i~i~vk~~~g~~-~~~~v~~~~tv~~lK~~i~~--~~gi~~~~q~L~~~g~~L~d~~~-----L~~~~i~~~~~l~l~ 70 (72)
T cd01809 1 IEIKVKTLDSQT-HTFTVEEEITVLDLKEKIAE--EVGIPVEQQRLIYSGRVLKDDET-----LSEYKVEDGHTIHLV 70 (72)
T ss_pred CEEEEEeCCCCE-EEEEECCCCcHHHHHHHHHH--HHCcCHHHeEEEECCEECCCcCc-----HHHCCCCCCCEEEEE
Confidence 789999999876 88999999999999999999 99999999999999999999888 999999999999543
No 15
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.68 E-value=8.6e-17 Score=107.08 Aligned_cols=68 Identities=19% Similarity=0.249 Sum_probs=63.3
Q ss_pred EEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 032671 12 ITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAA 87 (136)
Q Consensus 12 I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~ 87 (136)
|+||+..++. +.++++++.||++||++|++ ..|+|+++|+|+|+|+.|.|+.+ |++|||++|++|.+.
T Consensus 1 i~vk~~~g~~-~~l~v~~~~tV~~lK~~I~~--~~gi~~~~q~L~~~G~~L~D~~t-----L~~~~i~~~~tl~l~ 68 (74)
T cd01810 1 ILVRNDKGRS-SIYEVQLTQTVATLKQQVSQ--RERVQADQFWLSFEGRPMEDEHP-----LGEYGLKPGCTVFMN 68 (74)
T ss_pred CEEECCCCCE-EEEEECCcChHHHHHHHHHH--HhCCCHHHeEEEECCEECCCCCC-----HHHcCCCCCCEEEEE
Confidence 6899999976 88999999999999999998 99999999999999999999988 999999999999443
No 16
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.68 E-value=9.3e-17 Score=104.92 Aligned_cols=70 Identities=26% Similarity=0.380 Sum_probs=63.6
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEe
Q 032671 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAV 88 (136)
Q Consensus 10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~~ 88 (136)
|+|+||+. +.. +.+++++++||.+||++|++ .+|+|+++|||+|+|+.|.|+.+ |++||+++|++|++++
T Consensus 1 i~i~vk~~-g~~-~~i~v~~~~tv~~lK~~i~~--~~gi~~~~q~L~~~g~~l~d~~~-----L~~~~i~~g~~l~v~~ 70 (71)
T cd01812 1 IRVRVKHG-GES-HDLSISSQATFGDLKKMLAP--VTGVEPRDQKLIFKGKERDDAET-----LDMSGVKDGSKVMLLE 70 (71)
T ss_pred CEEEEEEC-CEE-EEEEECCCCcHHHHHHHHHH--hhCCChHHeEEeeCCcccCccCc-----HHHcCCCCCCEEEEec
Confidence 68999997 444 78999999999999999999 99999999999999999988777 9999999999997654
No 17
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.68 E-value=1.5e-16 Score=104.99 Aligned_cols=68 Identities=25% Similarity=0.400 Sum_probs=62.8
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032671 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA 86 (136)
Q Consensus 10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv 86 (136)
|+|+||+..+. ..+++++++||++||++|++ ..++++++|||+|+|+.|.|+.+ |++||+++|++|.+
T Consensus 1 ~~i~vk~~~g~--~~l~v~~~~TV~~lK~~I~~--~~~i~~~~~~Li~~Gk~L~d~~t-----L~~~~i~~~stl~l 68 (71)
T cd01808 1 IKVTVKTPKDK--EEIEIAEDASVKDFKEAVSK--KFKANQEQLVLIFAGKILKDTDT-----LTQHNIKDGLTVHL 68 (71)
T ss_pred CEEEEEcCCCC--EEEEECCCChHHHHHHHHHH--HhCCCHHHEEEEECCeEcCCCCc-----HHHcCCCCCCEEEE
Confidence 57999999884 58999999999999999998 88999999999999999999888 99999999999944
No 18
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.68 E-value=1.2e-16 Score=105.15 Aligned_cols=68 Identities=22% Similarity=0.339 Sum_probs=63.2
Q ss_pred EEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 032671 12 ITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAA 87 (136)
Q Consensus 12 I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~ 87 (136)
|+||+..|.. +.++++++.||++||++|++ +.|+|+++|+|+|+|+.|.|+.+ |++|||++|++|.+.
T Consensus 1 i~vk~~~g~~-~~~~v~~~~tV~~lK~~i~~--~~gi~~~~q~Li~~G~~L~d~~~-----l~~~~i~~~stl~l~ 68 (70)
T cd01798 1 VYVRTNTGHT-FPVEVDPDTDIKQLKEVVAK--RQGVPPDQLRVIFAGKELRNTTT-----IQECDLGQQSILHAV 68 (70)
T ss_pred CEEEcCCCCE-EEEEECCCChHHHHHHHHHH--HHCCCHHHeEEEECCeECCCCCc-----HHHcCCCCCCEEEEE
Confidence 5789998876 88999999999999999999 99999999999999999999988 999999999999543
No 19
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.67 E-value=1.9e-16 Score=104.43 Aligned_cols=71 Identities=21% Similarity=0.347 Sum_probs=65.8
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEe
Q 032671 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAV 88 (136)
Q Consensus 10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~~ 88 (136)
|+|+||+.+|+. +.++++++.||++||++|++ .+++|+++|||+|.|+.|.|+.+ |++|++++|++|.+..
T Consensus 1 m~i~v~~~~g~~-~~~~v~~~~tV~~lK~~i~~--~~g~~~~~q~L~~~g~~L~d~~~-----L~~~~i~~~~~i~l~~ 71 (76)
T cd01803 1 MQIFVKTLTGKT-ITLEVEPSDTIENVKAKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIQKESTLHLVL 71 (76)
T ss_pred CEEEEEcCCCCE-EEEEECCcCcHHHHHHHHHH--HhCCCHHHeEEEECCEECCCCCc-----HHHcCCCCCCEEEEEE
Confidence 789999999876 88999999999999999999 99999999999999999998888 9999999999995543
No 20
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.67 E-value=1.2e-16 Score=103.99 Aligned_cols=68 Identities=31% Similarity=0.473 Sum_probs=62.6
Q ss_pred EeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEecC
Q 032671 15 KTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAVKP 90 (136)
Q Consensus 15 Kt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~~~p 90 (136)
|+.+|+. +.+++++++||.+||++|++ .+++|+++|+|+|+|+.|.|+.+ |.+|||++|++|++..+|
T Consensus 1 k~~~g~~-~~~~v~~~~tV~~lK~~i~~--~~~~~~~~~~L~~~G~~L~d~~t-----L~~~~i~~~~~I~l~~k~ 68 (69)
T PF00240_consen 1 KTLSGKT-FTLEVDPDDTVADLKQKIAE--ETGIPPEQQRLIYNGKELDDDKT-----LSDYGIKDGSTIHLVIKP 68 (69)
T ss_dssp EETTSEE-EEEEEETTSBHHHHHHHHHH--HHTSTGGGEEEEETTEEESTTSB-----TGGGTTSTTEEEEEEESS
T ss_pred CCCCCcE-EEEEECCCCCHHHhhhhccc--ccccccccceeeeeeecccCcCc-----HHHcCCCCCCEEEEEEec
Confidence 5777864 89999999999999999999 99999999999999999998888 999999999999777665
No 21
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.65 E-value=2.7e-16 Score=104.31 Aligned_cols=67 Identities=22% Similarity=0.393 Sum_probs=60.8
Q ss_pred EEEEeC-CCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCC-CCCCCCCccccCCCCCCEEEE
Q 032671 12 ITVKTI-GPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDT-QDDDDRDDVYLQLSNGDSVIA 86 (136)
Q Consensus 12 I~VKt~-~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~-~t~d~~~L~~~~I~dG~tIlv 86 (136)
|+||+. ++.. +.++++++.||++||++|++ .+|+|+++|||+|+|+.|.|+ .+ |++|||++|++|++
T Consensus 1 l~v~~~~~g~~-~~l~v~~~~TV~~lK~~I~~--~~gip~~~q~Li~~Gk~L~D~~~~-----L~~~gi~~~~~l~l 69 (71)
T cd01796 1 ITVYTARSETT-FSLDVDPDLELENFKALCEA--ESGIPASQQQLIYNGRELVDNKRL-----LALYGVKDGDLVVL 69 (71)
T ss_pred CEEEECCCCCE-EEEEECCcCCHHHHHHHHHH--HhCCCHHHeEEEECCeEccCCccc-----HHHcCCCCCCEEEE
Confidence 578999 6654 88999999999999999998 999999999999999999886 46 99999999999965
No 22
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.60 E-value=2.5e-15 Score=127.77 Aligned_cols=74 Identities=23% Similarity=0.449 Sum_probs=67.2
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCC---CCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEE-
Q 032671 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANH---LPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVI- 85 (136)
Q Consensus 10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~g---i~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIl- 85 (136)
|+|+||+..++. +.|+|+++.||.+||++|+. ..| +++++|||||+||+|+|+.+ |++|+|++|++|+
T Consensus 1 MkItVKtl~g~~-~~IeV~~~~TV~dLK~kI~~--~~g~~~ip~~~QkLIy~GkiL~Dd~t-----L~dy~I~e~~~Ivv 72 (378)
T TIGR00601 1 MTLTFKTLQQQK-FKIDMEPDETVKELKEKIEA--EQGKDAYPVAQQKLIYSGKILSDDKT-----VREYKIKEKDFVVV 72 (378)
T ss_pred CEEEEEeCCCCE-EEEEeCCcChHHHHHHHHHH--hhCCCCCChhHeEEEECCEECCCCCc-----HHHcCCCCCCEEEE
Confidence 789999999976 89999999999999999998 887 99999999999999999988 9999999999994
Q ss_pred EEecCC
Q 032671 86 AAVKPK 91 (136)
Q Consensus 86 v~~~p~ 91 (136)
++.+++
T Consensus 73 mv~k~k 78 (378)
T TIGR00601 73 MVSKPK 78 (378)
T ss_pred EeccCC
Confidence 444543
No 23
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.56 E-value=1.1e-14 Score=92.20 Aligned_cols=64 Identities=33% Similarity=0.581 Sum_probs=59.4
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCC
Q 032671 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGD 82 (136)
Q Consensus 10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~ 82 (136)
|+|+||+.+ .. +.++++++.||++||++|+. .+++|+++|||+|.|+.|.|+.+ |++||+++|+
T Consensus 1 ~~i~vk~~~-~~-~~~~v~~~~tv~~lk~~i~~--~~~~~~~~~~L~~~g~~L~d~~t-----L~~~~i~~~~ 64 (64)
T smart00213 1 IELTVKTLD-GT-ITLEVKPSDTVSELKEKIAE--LTGIPVEQQRLIYKGKVLEDDRT-----LADYNIQDGS 64 (64)
T ss_pred CEEEEEECC-ce-EEEEECCCCcHHHHHHHHHH--HHCCCHHHEEEEECCEECCCCCC-----HHHcCCcCCC
Confidence 689999998 44 88999999999999999998 99999999999999999998877 9999999985
No 24
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.54 E-value=1.5e-14 Score=96.84 Aligned_cols=62 Identities=19% Similarity=0.307 Sum_probs=56.6
Q ss_pred cEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEecC
Q 032671 22 PSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAVKP 90 (136)
Q Consensus 22 ~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~~~p 90 (136)
.+.+++++++||.+||++|+. .+|+|+++|||+|+|+.|+|+.+ |++|+|++|++|.|...+
T Consensus 9 ~~~l~v~~~~TV~~lK~~i~~--~~gip~~~q~L~~~G~~L~d~~t-----L~~~~i~~g~~l~v~~~~ 70 (76)
T cd01800 9 MLNFTLQLSDPVSVLKVKIHE--ETGMPAGKQKLQYEGIFIKDSNS-----LAYYNLANGTIIHLQLKE 70 (76)
T ss_pred EEEEEECCCCcHHHHHHHHHH--HHCCCHHHEEEEECCEEcCCCCc-----HHHcCCCCCCEEEEEEec
Confidence 378999999999999999998 99999999999999999999888 999999999999555443
No 25
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.54 E-value=1.1e-14 Score=126.16 Aligned_cols=72 Identities=26% Similarity=0.393 Sum_probs=66.6
Q ss_pred ceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EEE
Q 032671 9 SVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IAA 87 (136)
Q Consensus 9 ~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI-lv~ 87 (136)
.|+|+||+.+.+ ..|.|..++||.+||+.|+. .+++++++|+|||.||+|+|+++ |..|||+||+|| +|+
T Consensus 15 ~irV~Vkt~~dk--~~~~V~~~ssV~qlKE~I~~--~f~a~~dqlvLIfaGrILKD~dT-----L~~~gI~Dg~TvHLVi 85 (493)
T KOG0010|consen 15 LIRVTVKTPKDK--YEVNVASDSSVLQLKELIAQ--RFGAPPDQLVLIYAGRILKDDDT-----LKQYGIQDGHTVHLVI 85 (493)
T ss_pred eeEEEEecCCcc--eeEecccchHHHHHHHHHHH--hcCCChhHeeeeecCccccChhh-----HHHcCCCCCcEEEEEe
Confidence 489999999994 68999999999999999999 99999999999999999999999 999999999999 554
Q ss_pred ec
Q 032671 88 VK 89 (136)
Q Consensus 88 ~~ 89 (136)
..
T Consensus 86 k~ 87 (493)
T KOG0010|consen 86 KS 87 (493)
T ss_pred cc
Confidence 43
No 26
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.52 E-value=7.8e-14 Score=95.90 Aligned_cols=75 Identities=23% Similarity=0.401 Sum_probs=69.5
Q ss_pred CCCCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCE
Q 032671 4 GEISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDS 83 (136)
Q Consensus 4 ~e~~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~t 83 (136)
++.+..|+|+|++..+.. +.+.|.+++|+..||+++++ +.|+|+++|||+|.|+.|.++.| +.+|++++|++
T Consensus 6 ~~~~~~i~I~v~~~~g~~-~~~~v~~~~~l~~l~~~y~~--~~gi~~~~~rf~f~G~~L~~~~T-----~~~l~m~d~d~ 77 (87)
T cd01763 6 GEISEHINLKVKGQDGNE-VFFKIKRSTPLKKLMEAYCQ--RQGLSMNSVRFLFDGQRIRDNQT-----PDDLGMEDGDE 77 (87)
T ss_pred CCCCCeEEEEEECCCCCE-EEEEEcCCCHHHHHHHHHHH--HhCCCccceEEEECCeECCCCCC-----HHHcCCCCCCE
Confidence 456788999999998866 88999999999999999999 99999999999999999999988 99999999999
Q ss_pred EEE
Q 032671 84 VIA 86 (136)
Q Consensus 84 Ilv 86 (136)
|.|
T Consensus 78 I~v 80 (87)
T cd01763 78 IEV 80 (87)
T ss_pred EEE
Confidence 933
No 27
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.47 E-value=5.9e-14 Score=95.08 Aligned_cols=54 Identities=28% Similarity=0.377 Sum_probs=47.2
Q ss_pred ecC-CCcHHHHHHHHHhccCC--CC-CCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 032671 27 VSS-PIKVRDLRKLIATSSAN--HL-PIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAA 87 (136)
Q Consensus 27 v~~-~~TV~eLK~~Ia~~~~~--gi-~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~ 87 (136)
+++ +.||.+||++|++ ++ ++ ++++|||||+||+|+|+.+ |++|||++|++|+++
T Consensus 16 ~~~~~~TV~~LK~kI~~--~~~egi~~~dqQrLIy~GKiL~D~~T-----L~dygI~~gstlhLv 73 (75)
T cd01815 16 VSPGGYQVSTLKQLIAA--QLPDSLPDPELIDLIHCGRKLKDDQT-----LDFYGIQSGSTIHIL 73 (75)
T ss_pred cCCccCcHHHHHHHHHH--hhccCCCChHHeEEEeCCcCCCCCCc-----HHHcCCCCCCEEEEE
Confidence 444 5899999999998 75 46 5999999999999999988 999999999999544
No 28
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=9e-14 Score=90.64 Aligned_cols=68 Identities=21% Similarity=0.379 Sum_probs=64.1
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEE
Q 032671 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVI 85 (136)
Q Consensus 10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIl 85 (136)
|.|++|+..++. +.+++++..+|+.+|+.|.+ +.|+||.+|||||.||++.|+.+ -.+|++.-|+.+.
T Consensus 1 m~iKvktLt~Ke-IeidIep~DkverIKErvEE--keGIPp~qqrli~~gkqm~DD~t-----A~~Y~~~~GSVlH 68 (70)
T KOG0005|consen 1 MLIKVKTLTGKE-IEIDIEPTDKVERIKERVEE--KEGIPPQQQRLIYAGKQMNDDKT-----AAHYNLLGGSVLH 68 (70)
T ss_pred CeeeEeeeccce-EEEeeCcchHHHHHHHHhhh--hcCCCchhhhhhhcccccccccc-----HHHhhhccceeEe
Confidence 679999999987 99999999999999999999 99999999999999999999988 9999999999883
No 29
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=99.41 E-value=5.9e-13 Score=96.27 Aligned_cols=82 Identities=13% Similarity=0.182 Sum_probs=65.2
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhcc---CCC--CCCCceEEEecCeecCCCCCCCCCCccccC----
Q 032671 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSS---ANH--LPIENLRLVFRGKVLDDTQDDDDRDDVYLQ---- 77 (136)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~---~~g--i~~~~QRLI~~GK~L~D~~t~d~~~L~~~~---- 77 (136)
.+.+.|++|...|...-...++++.||++||++|++.. +.+ +++++|||||+||+|+|+.+ |++|+
T Consensus 2 ~~~~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~T-----L~d~~~p~g 76 (113)
T cd01814 2 EEQIEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKT-----VGECRSPVG 76 (113)
T ss_pred CccEEEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCc-----HHHhCCccc
Confidence 36789999999997634578899999999999998511 234 44999999999999999988 99999
Q ss_pred --CCCCCEEEEEecCCCC
Q 032671 78 --LSNGDSVIAAVKPKPP 93 (136)
Q Consensus 78 --I~dG~tIlv~~~p~~~ 93 (136)
+.-..|++|...|+++
T Consensus 77 ~~~~~~~TmHvvlr~~~~ 94 (113)
T cd01814 77 DIAGGVITMHVVVQPPLA 94 (113)
T ss_pred ccCCCceEEEEEecCCCC
Confidence 6666777666665544
No 30
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.40 E-value=8.4e-13 Score=88.94 Aligned_cols=67 Identities=19% Similarity=0.205 Sum_probs=56.5
Q ss_pred EEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecC-CCCCCCCCCccccCCC-CCCEEEE
Q 032671 11 EITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLD-DTQDDDDRDDVYLQLS-NGDSVIA 86 (136)
Q Consensus 11 ~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~-D~~t~d~~~L~~~~I~-dG~tIlv 86 (136)
.|.=|...+.. +.+++++++||++||++|++ .+|+|+++||| |.|+.|. |+.+ |++||++ +|+++++
T Consensus 4 ~~~~~~~~~~t-~~l~v~~~~TV~~lK~kI~~--~~gip~~~QrL-~~G~~L~dD~~t-----L~~ygi~~~g~~~~l 72 (75)
T cd01799 4 SVEDAQSHTVT-IWLTVRPDMTVAQLKDKVFL--DYGFPPAVQRW-VIGQRLARDQET-----LYSHGIRTNGDSAFL 72 (75)
T ss_pred EEeccccCCCe-EEEEECCCCcHHHHHHHHHH--HHCcCHHHEEE-EcCCeeCCCcCC-----HHHcCCCCCCCEEEE
Confidence 34445555554 78999999999999999999 99999999999 9999985 5566 9999999 8899954
No 31
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=99.40 E-value=4.6e-13 Score=111.58 Aligned_cols=74 Identities=24% Similarity=0.367 Sum_probs=67.9
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCC--CCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EE
Q 032671 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANH--LPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IA 86 (136)
Q Consensus 10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~g--i~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI-lv 86 (136)
|+|+||+..+.. +++++.++.||.++|+.|+. ..| +|+++|+|||.||+|+|+.+ +.+|+|++++.| ++
T Consensus 1 m~lt~KtL~q~~-F~iev~Pe~tV~evK~kIet--~~g~dyP~~~QkLIy~GkiL~D~~t-----v~Eykv~E~~fiVvM 72 (340)
T KOG0011|consen 1 MKLTVKTLKQQT-FTIEVKPEDTVVEVKKKIET--EKGPDYPAEQQKLIYSGKILKDETT-----VGEYKVKEKKFIVVM 72 (340)
T ss_pred CeeEeeeccCce-eEeecCcchhHHHHHHHHHh--ccCCCCchhhheeeecceeccCCcc-----hhhhccccCceEEEE
Confidence 789999999987 99999999999999999999 666 99999999999999999988 999999999999 55
Q ss_pred EecCC
Q 032671 87 AVKPK 91 (136)
Q Consensus 87 ~~~p~ 91 (136)
+.+++
T Consensus 73 lsK~k 77 (340)
T KOG0011|consen 73 LSKDK 77 (340)
T ss_pred EecCc
Confidence 55664
No 32
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=99.40 E-value=1e-12 Score=84.05 Aligned_cols=67 Identities=28% Similarity=0.413 Sum_probs=59.8
Q ss_pred EEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEe
Q 032671 14 VKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAV 88 (136)
Q Consensus 14 VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~~ 88 (136)
||+..+.. +.+.+++++||++||++|+. .+++|+++|+|+|.|+.|.|+.+ |.+|++.+|++|+++.
T Consensus 2 v~~~~~~~-~~~~~~~~~ti~~lK~~i~~--~~~~~~~~~~l~~~g~~l~d~~~-----l~~~~v~~~~~i~v~~ 68 (69)
T cd01769 2 VKTLTGKT-FELEVSPDDTVAELKAKIAA--KEGVPPEQQRLIYAGKILKDDKT-----LSDYGIQDGSTLHLVL 68 (69)
T ss_pred eEccCCCE-EEEEECCCChHHHHHHHHHH--HHCcChHHEEEEECCcCCCCcCC-----HHHCCCCCCCEEEEEE
Confidence 56666654 78999999999999999999 99999999999999999988877 9999999999997653
No 33
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=1.3e-12 Score=98.87 Aligned_cols=70 Identities=21% Similarity=0.361 Sum_probs=65.3
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EEE
Q 032671 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IAA 87 (136)
Q Consensus 10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI-lv~ 87 (136)
|+|+|++..++. +.+++.++.||..+|++|+. +.+||+++|||||.|+.|+|..+ |++|+|+..+|| +++
T Consensus 1 m~ifVk~l~~kt-i~~eve~~~ti~~~Kakiq~--~egIp~dqqrlifag~qLedgrt-----lSDY~Iqkestl~l~l 71 (156)
T KOG0004|consen 1 MQIFVKTLTGKT-ITLEVEANDTIDNVKAKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIQKESTLHLVL 71 (156)
T ss_pred Cccchhhccccc-eeeeecccccHHHHHHhhhc--ccCCCchhhhhhhhhcccccCCc-----cccccccccceEEEEE
Confidence 689999999976 88999999999999999998 99999999999999999999988 999999999999 554
No 34
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=9e-13 Score=94.94 Aligned_cols=69 Identities=22% Similarity=0.380 Sum_probs=64.2
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EE
Q 032671 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IA 86 (136)
Q Consensus 10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI-lv 86 (136)
|++++++..|+. +.+++.++.||..||++|.. +.|+|+++|+|+|.|++|+|..| +++||++--+|| ++
T Consensus 1 ~~~~~~~~~GKT-~~le~EpS~ti~~vKA~i~~--~~Gi~~~~~~L~~~~k~LED~~T-----la~Y~i~~~~Tl~~~ 70 (128)
T KOG0003|consen 1 MQIFVKTLTGKT-ITLEVEPSDTIDNVKAKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LADYNIQKESTLHLV 70 (128)
T ss_pred CcEEEEEeeCce-EEEEecccchHHHHHHHhcc--ccCCCHHHHHHHhcccccccCCc-----ccccCccchhhhhhh
Confidence 578899998976 88999999999999999988 99999999999999999999888 999999999999 44
No 35
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=99.22 E-value=8.1e-11 Score=80.58 Aligned_cols=72 Identities=18% Similarity=0.265 Sum_probs=58.0
Q ss_pred ceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEE-EecCe-----ec-CCCCCCCCCCccccCCCCC
Q 032671 9 SVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRL-VFRGK-----VL-DDTQDDDDRDDVYLQLSNG 81 (136)
Q Consensus 9 ~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRL-I~~GK-----~L-~D~~t~d~~~L~~~~I~dG 81 (136)
+++|.|++..........+++++||.+||++++. .+|++|+.||| +|.|+ .| +|+ .+|.+||+++|
T Consensus 1 ~v~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~--~~G~~~~~mrL~l~~~~~~~~~~l~~d~-----~~L~~y~~~dg 73 (84)
T cd01789 1 TVTVNITSSADSFSFEKKYSRGLTIAELKKKLEL--VVGTPASSMRLQLFDGDDKLVSKLDDDD-----ALLGSYPVDDG 73 (84)
T ss_pred CEEEEEEeCCCceeeeEecCCCCcHHHHHHHHHH--HHCCCccceEEEEEcCCCCeEeecCCCc-----cEeeeccCCCC
Confidence 3678888876544344569999999999999999 99999999999 58888 34 344 45999999999
Q ss_pred CEEEEE
Q 032671 82 DSVIAA 87 (136)
Q Consensus 82 ~tIlv~ 87 (136)
.+|+|.
T Consensus 74 ~~IhVv 79 (84)
T cd01789 74 CRIHVI 79 (84)
T ss_pred CEEEEE
Confidence 999543
No 36
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=99.18 E-value=5e-11 Score=78.17 Aligned_cols=68 Identities=25% Similarity=0.421 Sum_probs=62.0
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCC-CceEEEecCeecCCCCCCCCCCccccCCCCCCEEE
Q 032671 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPI-ENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVI 85 (136)
Q Consensus 10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~-~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIl 85 (136)
|+|+|++.+++. +.+.|.++.++..|++.+++ ..++++ +.++|+|.|+.|.++.| +.++|+++|++|-
T Consensus 1 I~i~v~~~~~~~-~~~~v~~~~~~~~l~~~~~~--~~~i~~~~~~~l~fdG~~L~~~~T-----~~~~~ied~d~Id 69 (72)
T PF11976_consen 1 ITIKVRSQDGKE-IKFKVKPTTTVSKLIEKYCE--KKGIPPEESIRLIFDGKRLDPNDT-----PEDLGIEDGDTID 69 (72)
T ss_dssp EEEEEEETTSEE-EEEEEETTSCCHHHHHHHHH--HHTTTT-TTEEEEETTEEE-TTSC-----HHHHT-STTEEEE
T ss_pred CEEEEEeCCCCE-EEEEECCCCcHHHHHHHHHH--hhCCCccceEEEEECCEEcCCCCC-----HHHCCCCCCCEEE
Confidence 789999998874 88999999999999999998 999999 99999999999998888 9999999999993
No 37
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=99.13 E-value=1.1e-10 Score=83.03 Aligned_cols=60 Identities=22% Similarity=0.207 Sum_probs=54.1
Q ss_pred EEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEe
Q 032671 23 SRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAV 88 (136)
Q Consensus 23 ~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~~ 88 (136)
..++|++++||++||.+|.+ .++++|++|+|+|.|+.|.| |+.+|++|||..|+.|+++.
T Consensus 17 ~~L~V~~~~TVg~LK~lImQ--~f~V~P~dQkL~~dG~~L~D----DsrTLssyGv~sgSvl~Lli 76 (107)
T cd01795 17 KALLVSANQTLKELKIQIMH--AFSVAPFDQNLSIDGKILSD----DCATLGTLGVIPESVILLKA 76 (107)
T ss_pred ceEEeCccccHHHHHHHHHH--HhcCCcccceeeecCceecc----CCccHHhcCCCCCCEEEEEe
Confidence 46899999999999999999 99999999999999998864 44679999999999996665
No 38
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=99.13 E-value=1.4e-10 Score=77.86 Aligned_cols=69 Identities=29% Similarity=0.363 Sum_probs=54.4
Q ss_pred EEEEEeCC-CCCcEEEEe-cCCCcHHHHHHHHHhccCCC-CCCCceEE--EecCeecCCCCCCCCCCccccCCCCCCEEE
Q 032671 11 EITVKTIG-PAPPSRLSV-SSPIKVRDLRKLIATSSANH-LPIENLRL--VFRGKVLDDTQDDDDRDDVYLQLSNGDSVI 85 (136)
Q Consensus 11 ~I~VKt~~-~~~~~~v~v-~~~~TV~eLK~~Ia~~~~~g-i~~~~QRL--I~~GK~L~D~~t~d~~~L~~~~I~dG~tIl 85 (136)
+|.++..+ ... ..+++ ++++||.+||..|++ .++ ++++|||| +++|+.|.|+.+ |.+||+++|++||
T Consensus 2 ~i~~~~~~~k~~-~~~~~~~~~aTV~dlk~~i~~--~~~~~~~~Rqrl~~~~~g~~L~d~~t-----L~~~gv~~g~~ly 73 (77)
T cd01801 2 EILDAKRSDKPI-GKLKVSSGDATIADLKKLIAK--SSPQLTVNRQSLRLEPKGKSLKDDDT-----LVDLGVGAGATLY 73 (77)
T ss_pred eeeccccCcCce-eecccCCCCccHHHHHHHHHH--HcCCCCcceeEEEeCCCCcccCCccc-----HhhcCCCCCCEEE
Confidence 45666555 322 22334 478999999999998 664 68999999 589999998888 9999999999998
Q ss_pred EE
Q 032671 86 AA 87 (136)
Q Consensus 86 v~ 87 (136)
|+
T Consensus 74 vK 75 (77)
T cd01801 74 VR 75 (77)
T ss_pred Ee
Confidence 86
No 39
>PLN02560 enoyl-CoA reductase
Probab=99.10 E-value=2.8e-10 Score=94.70 Aligned_cols=73 Identities=26% Similarity=0.295 Sum_probs=61.1
Q ss_pred eEEEEEeCCCCCc--EEEEecCCCcHHHHHHHHHhccCCCC-CCCceEEEec---C----eecCCCCCCCCCCccccCCC
Q 032671 10 VEITVKTIGPAPP--SRLSVSSPIKVRDLRKLIATSSANHL-PIENLRLVFR---G----KVLDDTQDDDDRDDVYLQLS 79 (136)
Q Consensus 10 m~I~VKt~~~~~~--~~v~v~~~~TV~eLK~~Ia~~~~~gi-~~~~QRLI~~---G----K~L~D~~t~d~~~L~~~~I~ 79 (136)
|+|+|+..+|+.. .++++++++||++||++|++ +.++ +++||||++. | +.|+|+.+ |+++|++
T Consensus 1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk--~~~~~~~~RqRL~~~~~~gk~~g~~L~d~kt-----L~d~gv~ 73 (308)
T PLN02560 1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHK--RKKKYYPSRQRLTLPLPPGKTRPTVLDDSKS-----LKDYGLG 73 (308)
T ss_pred CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHH--HcCCCChhheEEEEecCCCCcCccccCCCCC-----HHhcCCC
Confidence 6789998777652 26899999999999999998 7775 8999999983 3 36777766 9999999
Q ss_pred CCCEEEEEec
Q 032671 80 NGDSVIAAVK 89 (136)
Q Consensus 80 dG~tIlv~~~ 89 (136)
+|++|+++--
T Consensus 74 ~gstLy~kDL 83 (308)
T PLN02560 74 DGGTVVFKDL 83 (308)
T ss_pred CCceEEEEeC
Confidence 9999998754
No 40
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=98.94 E-value=3.1e-09 Score=72.62 Aligned_cols=77 Identities=16% Similarity=0.278 Sum_probs=57.6
Q ss_pred ceEEEEEeCCCC-CcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEec----CeecCCCCCCCCCCccccCCCCCCE
Q 032671 9 SVEITVKTIGPA-PPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFR----GKVLDDTQDDDDRDDVYLQLSNGDS 83 (136)
Q Consensus 9 ~m~I~VKt~~~~-~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~----GK~L~D~~t~d~~~L~~~~I~dG~t 83 (136)
.++|.|.+...+ ......++.++||.+||++|+. .+|+|++.|||.|. +.... ...+|+.+|.+||+++|.+
T Consensus 1 ~v~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~--~~Gi~~~~m~L~l~~~~~~~~~~-~~~dd~~~L~~y~~~dg~~ 77 (87)
T PF14560_consen 1 VVKLFITSSNSKQRSVEKRFPKSITVSELKQKLEK--LTGIPPSDMRLQLKSDKDDSKIE-ELDDDDATLGSYGIKDGMR 77 (87)
T ss_dssp EEEEEEEESSSSSSEEEEEEETTSBHHHHHHHHHH--HHTS-TTTEEEEEE-TSSSSEEE-ESSGSSSBCCHHT-STTEE
T ss_pred CEEEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHH--HhCCCcccEEEEEEecCCCcccc-ccCCCccEeecCCCCCCCE
Confidence 367888887664 2367899999999999999999 99999999999887 22211 1123456699999999999
Q ss_pred EEEEe
Q 032671 84 VIAAV 88 (136)
Q Consensus 84 Ilv~~ 88 (136)
|+|.-
T Consensus 78 i~V~D 82 (87)
T PF14560_consen 78 IHVVD 82 (87)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 97653
No 41
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=1.5e-09 Score=100.96 Aligned_cols=79 Identities=23% Similarity=0.540 Sum_probs=68.1
Q ss_pred EEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEecC
Q 032671 11 EITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAVKP 90 (136)
Q Consensus 11 ~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~~~p 90 (136)
.|+|||+.... +++.|....||.+||.+|.+ +.+|+.+.|||||.|++|.|+++ +.+||| +|.+|.++-.|
T Consensus 4 ~v~vktld~r~-~t~~ig~q~ti~~~~d~~r~--~~ni~s~~qr~i~~grvl~~~k~-----vq~~~v-dgk~~hlverp 74 (1143)
T KOG4248|consen 4 NVLVKTLDSRT-RTFIIGAQMTIKEFKDHIRA--SVNIPSEKQRLIYQGRVLQDDKK-----VQEYNV-DGKVIHLVERP 74 (1143)
T ss_pred ceeeeecccce-eEEEechHHHHHHHHHHHHH--hcccccccceeeecceeeccchh-----hhhccC-CCeEEEeeccC
Confidence 48999999966 89999999999999999999 99999999999999999999988 999999 89888655553
Q ss_pred CCCCccccc
Q 032671 91 KPPPRHLRD 99 (136)
Q Consensus 91 ~~~~~~~~~ 99 (136)
||+.++.+
T Consensus 75 -pp~~~~~s 82 (1143)
T KOG4248|consen 75 -PPQTHLPS 82 (1143)
T ss_pred -CCCccccc
Confidence 34444443
No 42
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=98.84 E-value=4.7e-08 Score=70.57 Aligned_cols=71 Identities=18% Similarity=0.355 Sum_probs=53.7
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCC-----CCCCceEEEecCeecCCCCCCCCCCccccCCCCCC
Q 032671 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANH-----LPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGD 82 (136)
Q Consensus 8 ~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~g-----i~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~ 82 (136)
+.|.|+++-..|.....+.+++++||.+||+.|...-... ..++.+||||.||.|.|+.+ |.++.+..|+
T Consensus 1 ~~i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~t-----L~~~~~~~~~ 75 (111)
T PF13881_consen 1 DKIELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKT-----LSDCRLPSGE 75 (111)
T ss_dssp TSEEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSB-----TGGGT--TTS
T ss_pred CeEEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCc-----HHHhCCCCCC
Confidence 3688999999998446789999999999999998622122 23667999999999999988 9999999988
Q ss_pred E
Q 032671 83 S 83 (136)
Q Consensus 83 t 83 (136)
+
T Consensus 76 ~ 76 (111)
T PF13881_consen 76 T 76 (111)
T ss_dssp E
T ss_pred C
Confidence 5
No 43
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=1.8e-08 Score=87.54 Aligned_cols=73 Identities=18% Similarity=0.191 Sum_probs=64.9
Q ss_pred ceEEEEEeCCCCCcEEE-EecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 032671 9 SVEITVKTIGPAPPSRL-SVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAA 87 (136)
Q Consensus 9 ~m~I~VKt~~~~~~~~v-~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~ 87 (136)
+..|.||+.+..+ .+ +++.+.|+..||+++.. .+|++|+|||++++|+.++|+-. +..++|++|.+|+|+
T Consensus 3 ~~~v~VKW~gk~y--~v~~l~~d~t~~vlKaqlf~--LTgV~PeRQKv~vKGg~a~dd~~-----~~al~iKpn~~lmMm 73 (473)
T KOG1872|consen 3 SDTVIVKWGGKKY--PVETLSTDETPSVLKAQLFA--LTGVPPERQKVMVKGGLAKDDVD-----WGALQIKPNETLMMM 73 (473)
T ss_pred cceEeeeecCccc--cceeccCCCchHHHHHHHHH--hcCCCccceeEEEeccccccccc-----ccccccCCCCEEEee
Confidence 4578999987765 55 49999999999999999 99999999999999999998766 999999999999888
Q ss_pred ecC
Q 032671 88 VKP 90 (136)
Q Consensus 88 ~~p 90 (136)
+.+
T Consensus 74 Gt~ 76 (473)
T KOG1872|consen 74 GTA 76 (473)
T ss_pred ccc
Confidence 753
No 44
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.70 E-value=1.9e-07 Score=58.62 Aligned_cols=69 Identities=25% Similarity=0.395 Sum_probs=61.0
Q ss_pred EEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEe
Q 032671 12 ITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAV 88 (136)
Q Consensus 12 I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~~ 88 (136)
+++++..++. +.+.+.+..+|..+|.+|+. ..++++..|++.+.|+.|.|+.+ +.+|+|..+.++.+..
T Consensus 2 ~~~~~~~gk~-~~~~~~~~~~i~~~k~~i~~--~~~~~~~~q~~~~~~~~l~d~~~-----l~~~~i~~~~~~~l~~ 70 (75)
T KOG0001|consen 2 IFVKTLDGKT-ITLEVSPSDTIEVVKAKIRD--KEGIPVDQQRLIFGGKPLEDGRT-----LADYNIQEGSTLHLVL 70 (75)
T ss_pred EEEEecCCCE-EEEEecCCCHHHHHHHHHHh--hcCCCCeeEEEEECCEECcCCCc-----HHHhCCCCCCEEEEEE
Confidence 5677766655 88999999999999999998 88999999999999999999877 9999999999995433
No 45
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=98.64 E-value=6.1e-08 Score=66.13 Aligned_cols=75 Identities=20% Similarity=0.277 Sum_probs=44.2
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCC-CCCCCCccccCCCCCCEEEE
Q 032671 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQ-DDDDRDDVYLQLSNGDSVIA 86 (136)
Q Consensus 8 ~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~-t~d~~~L~~~~I~dG~tIlv 86 (136)
+.|-|-|++..|. ..|++++++|+.+|+++|++ .++++++.|.| |..+...+.. ..++.+|+++||+.||.|++
T Consensus 3 ~~milRvrS~dG~--~Rie~~~~~t~~~L~~kI~~--~l~~~~~~~~L-~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL 77 (80)
T PF11543_consen 3 SSMILRVRSKDGM--KRIEVSPSSTLSDLKEKISE--QLSIPDSSQSL-SKDRNNKEELKSSDSKTLSSLGLKHGDMLYL 77 (80)
T ss_dssp ---EEEEE-SSEE--EEEEE-TTSBHHHHHHHHHH--HS---TTT----BSSGGGGGCSSS-TT-CCCCT---TT-EEE-
T ss_pred ccEEEEEECCCCC--EEEEcCCcccHHHHHHHHHH--HcCCCCcceEE-EecCCCCcccccCCcCCHHHcCCCCccEEEE
Confidence 6789999999985 57899999999999999999 99999999887 4433322222 23457799999999999976
Q ss_pred E
Q 032671 87 A 87 (136)
Q Consensus 87 ~ 87 (136)
.
T Consensus 78 ~ 78 (80)
T PF11543_consen 78 K 78 (80)
T ss_dssp -
T ss_pred e
Confidence 4
No 46
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=98.51 E-value=2.4e-07 Score=67.38 Aligned_cols=72 Identities=15% Similarity=0.148 Sum_probs=57.2
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCC-------CCCC
Q 032671 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQL-------SNGD 82 (136)
Q Consensus 10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I-------~dG~ 82 (136)
|.+++...-.+.++-++..++.||.+||+.|+. -...||+.|||+..+.+|+|+++ |++||+ ++-.
T Consensus 1 MdvFlmIrR~KTTiF~dakes~tVlelK~~ieg--I~k~pp~dQrL~kd~qvLeD~kT-----L~d~g~t~~~akaq~pA 73 (119)
T cd01788 1 MDVFLMIRRHKTTIFTDAKESTTVYELKRIVEG--ILKRPPEDQRLYKDDQLLDDGKT-----LGDCGFTSQTARPQAPA 73 (119)
T ss_pred CceEEEEEecceEEEeecCCcccHHHHHHHHHH--HhcCChhHheeecCceeeccccc-----HHHcCccccccccCCCC
Confidence 345555555555566899999999999999998 89999999999966777888877 999999 5566
Q ss_pred EE-EEEe
Q 032671 83 SV-IAAV 88 (136)
Q Consensus 83 tI-lv~~ 88 (136)
+| +.+.
T Consensus 74 ~vgLa~r 80 (119)
T cd01788 74 TVGLAFR 80 (119)
T ss_pred eEEEEEe
Confidence 66 5444
No 47
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=98.51 E-value=7e-07 Score=52.85 Aligned_cols=62 Identities=31% Similarity=0.392 Sum_probs=54.1
Q ss_pred CCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 032671 18 GPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAA 87 (136)
Q Consensus 18 ~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~ 87 (136)
++.. ..+.++++.|+.+||+.|.+ +.++++++|+|.+.|..+.+... +.++++.+|++|.+.
T Consensus 6 ~~~~-~~~~~~~~~tv~~l~~~i~~--~~~~~~~~~~l~~~~~~~~~~~~-----~~~~~~~~~~~i~~~ 67 (69)
T cd00196 6 DGKT-VELLVPSGTTVADLKEKLAK--KLGLPPEQQRLLVNGKILPDSLT-----LEDYGLQDGDELVLV 67 (69)
T ss_pred CCCE-EEEEcCCCCcHHHHHHHHHH--HHCcChHHeEEEECCeECCCCCc-----HHHcCCCCCCEEEEE
Confidence 3433 67888899999999999998 88999999999999999988777 789999999999654
No 48
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=1.2e-05 Score=67.94 Aligned_cols=65 Identities=23% Similarity=0.408 Sum_probs=55.3
Q ss_pred CCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EEEecC
Q 032671 19 PAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IAAVKP 90 (136)
Q Consensus 19 ~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI-lv~~~p 90 (136)
....++|+|+.+.+|.+||+.++. ..|+|+++.|+||.||.|.|+.+ +..+.+...+.+ +|...|
T Consensus 12 ~~h~l~v~v~~~t~I~~lke~Vak--~~gvp~D~L~viFaGKeLs~~tt-----v~~cDL~qqs~~hi~~lRP 77 (446)
T KOG0006|consen 12 SSHGLPVEVDSDTSIFQLKEVVAK--RQGVPADQLRVIFAGKELSNDTT-----VQNCDLSQQSATHIMLLRP 77 (446)
T ss_pred ccCceeEEEecCCCHHHHHHHHHH--hhCCChhheEEEEeccccccCce-----eecccccccchhhhhccCc
Confidence 333367899999999999999999 99999999999999999998877 998888777777 555555
No 49
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=97.85 E-value=5.5e-05 Score=53.40 Aligned_cols=56 Identities=25% Similarity=0.435 Sum_probs=41.4
Q ss_pred EEEEeCCCCCcEEEEec--CCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCC
Q 032671 12 ITVKTIGPAPPSRLSVS--SPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQD 67 (136)
Q Consensus 12 I~VKt~~~~~~~~v~v~--~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t 67 (136)
|+|+...+-.-..++++ ...||.+||+.|.+.......-.++||||.||.|.|+..
T Consensus 3 l~IRFs~sipDl~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~ 60 (97)
T PF10302_consen 3 LTIRFSDSIPDLPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTD 60 (97)
T ss_pred EEEEECCCCCCceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccch
Confidence 56676665443567777 679999999999882212355566999999999998766
No 50
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=0.00054 Score=48.68 Aligned_cols=72 Identities=19% Similarity=0.402 Sum_probs=59.8
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EE
Q 032671 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IA 86 (136)
Q Consensus 8 ~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI-lv 86 (136)
.-|+|+|+.-.+ ....+.|.-++.+.-|..+.++ +.|++.+..|++|.|+.+...+| -.+++.++||.| ++
T Consensus 19 ~hi~LKV~gqd~-~~~~Fkikr~t~LkKLM~aYc~--r~Gl~~~s~RFlFdG~rI~~~~T-----P~~L~mEd~D~Iev~ 90 (99)
T KOG1769|consen 19 EHINLKVKGQDG-SVVVFKIKRHTPLKKLMKAYCE--RQGLSMNSLRFLFDGQRIRETHT-----PADLEMEDGDEIEVV 90 (99)
T ss_pred ceEEEEEecCCC-CEEEEEeecCChHHHHHHHHHH--HcCCccceEEEEECCcCcCCCCC-----hhhhCCcCCcEEEEE
Confidence 345555555333 2245788899999999999988 99999999999999999999999 999999999999 54
Q ss_pred E
Q 032671 87 A 87 (136)
Q Consensus 87 ~ 87 (136)
.
T Consensus 91 ~ 91 (99)
T KOG1769|consen 91 Q 91 (99)
T ss_pred e
Confidence 3
No 51
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=6.1e-05 Score=63.79 Aligned_cols=81 Identities=16% Similarity=0.125 Sum_probs=58.7
Q ss_pred CCCceEEEEEeCCCCCc-EEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCC--CC
Q 032671 6 ISESVEITVKTIGPAPP-SRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSN--GD 82 (136)
Q Consensus 6 ~~~~m~I~VKt~~~~~~-~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~d--G~ 82 (136)
-+.++++.||..+.++. .+|..+-.+||++||..++..+....-...|||||+||.|.|... |.+.-.+. .+
T Consensus 6 ~e~~v~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgkllld~qc-----l~d~lrkq~k~H 80 (391)
T KOG4583|consen 6 FEFPVTLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLLDHQC-----LTDWLRKQVKEH 80 (391)
T ss_pred CCcceEEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhccccccchh-----HHHHHHHHHHHH
Confidence 34678999999988773 235566679999999999874444444566999999999999888 77765543 33
Q ss_pred EE-EEEecCC
Q 032671 83 SV-IAAVKPK 91 (136)
Q Consensus 83 tI-lv~~~p~ 91 (136)
.+ +|+..+.
T Consensus 81 v~hlvcnsk~ 90 (391)
T KOG4583|consen 81 VKHLVCNSKE 90 (391)
T ss_pred HHHHhcCCCC
Confidence 34 5555443
No 52
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=97.47 E-value=0.0011 Score=45.18 Aligned_cols=69 Identities=17% Similarity=0.240 Sum_probs=55.1
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEec---Ce--ecCCCCCCCCCCccccCCCCCCEE
Q 032671 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFR---GK--VLDDTQDDDDRDDVYLQLSNGDSV 84 (136)
Q Consensus 10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~---GK--~L~D~~t~d~~~L~~~~I~dG~tI 84 (136)
|+|+|+-.+... ..+.|+|..+|..+|++|.. ..+++- .|||-|. |+ .|.+..+ |.+|||=..-.|
T Consensus 1 iqVtV~q~g~~d-l~l~vnPy~pI~k~K~kI~~--~~~~~g-~qrLsfQepgg~rqlL~s~~s-----LA~yGiFs~~~i 71 (80)
T cd01811 1 IQVTVEQTGYSD-WILRVNPYSPIRKIKEKIRR--SRNCSG-LQRLSFQEPGGERQLLSSRKS-----LADYGIFSKTNI 71 (80)
T ss_pred CEEEeeecCCCc-eEEEeCCcchHHHHHHHHHH--hhCccc-ceEEEeecCCccccccccccc-----HhhhcceeccEE
Confidence 589999888866 89999999999999999988 777766 9999886 32 2455555 999999877777
Q ss_pred EEE
Q 032671 85 IAA 87 (136)
Q Consensus 85 lv~ 87 (136)
.++
T Consensus 72 ~ll 74 (80)
T cd01811 72 CLL 74 (80)
T ss_pred EEE
Confidence 433
No 53
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=7.3e-05 Score=49.64 Aligned_cols=67 Identities=18% Similarity=0.202 Sum_probs=56.2
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE
Q 032671 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV 84 (136)
Q Consensus 10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI 84 (136)
+++.+...-|++ ..+..+++.||++||..||. ++|-.++...|---+.+++|.-+ |++|.|.+|-.+
T Consensus 2 iev~~nDrLGKK-VRvKCn~dDtiGD~KKliaa--QtGT~~~kivl~k~~~i~kd~I~-----L~dyeihdg~~l 68 (73)
T KOG3493|consen 2 IEVVLNDRLGKK-VRVKCNTDDTIGDLKKLIAA--QTGTRPEKIVLKKWYTIFKDHIT-----LSDYEIHDGMNL 68 (73)
T ss_pred ceehhhhhcCce-EEEEeCCcccccCHHHHHHH--hhCCChhHhHHHhhhhhhhcccc-----eeeEEeccCccE
Confidence 456666666766 77899999999999999998 99999998877655677788877 999999999876
No 54
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=97.34 E-value=0.002 Score=42.92 Aligned_cols=78 Identities=19% Similarity=0.238 Sum_probs=61.5
Q ss_pred CCCCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCc-eEEE--ecCeecCCCCCCCCCCccccCCCC
Q 032671 4 GEISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIEN-LRLV--FRGKVLDDTQDDDDRDDVYLQLSN 80 (136)
Q Consensus 4 ~e~~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~-QRLI--~~GK~L~D~~t~d~~~L~~~~I~d 80 (136)
+++...+.|.||.++|+. +.-...++.||.+|..-|.. ....+... ..|+ |--+.+.++. +.+|.++|+.+
T Consensus 1 ~~~~~~~~I~vRlpdG~~-l~~~F~~~~tl~~l~~~v~~--~~~~~~~~~f~L~~~~Pr~~l~~~~---~~tl~e~~l~p 74 (82)
T PF00789_consen 1 SEESDVVRIQVRLPDGSR-LQRRFPKSDTLQDLYDFVES--QLFSPEESDFELITAFPRRELTDED---SKTLEEAGLLP 74 (82)
T ss_dssp -STSSEEEEEEEETTSTE-EEEEEETTSBHHHHHHHHHH--HHHCTTTSSEEEEESSSTEECCSTT---TSBTCCCTTSS
T ss_pred CCCCCEEEEEEECCCCCE-EEEEECCcchHHHHHHHHHH--hcCCCCCccEEEEeCCCCcCCCccc---cccHHHhcCCC
Confidence 467788999999999976 77899999999999999987 55455544 7886 5677776544 35699999999
Q ss_pred CCEEEEE
Q 032671 81 GDSVIAA 87 (136)
Q Consensus 81 G~tIlv~ 87 (136)
+.+|+|.
T Consensus 75 ~~~l~v~ 81 (82)
T PF00789_consen 75 SATLIVE 81 (82)
T ss_dssp CEEEEEE
T ss_pred CeEEEEE
Confidence 9998763
No 55
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=97.29 E-value=0.00047 Score=49.08 Aligned_cols=63 Identities=13% Similarity=0.112 Sum_probs=48.1
Q ss_pred EEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEec-C-eecCCCCCCCCCCccccCCCCC
Q 032671 12 ITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFR-G-KVLDDTQDDDDRDDVYLQLSNG 81 (136)
Q Consensus 12 I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~-G-K~L~D~~t~d~~~L~~~~I~dG 81 (136)
++++..-.+.++-++..++.||-+||.+++. -..-|++.|||..- - ..|.|..+ |+++|+...
T Consensus 3 ~f~~VrR~kttif~da~es~tV~elK~~l~g--i~~~Pvn~qrL~kmd~eqlL~D~kt-----L~d~gfts~ 67 (110)
T KOG4495|consen 3 VFLRVRRHKTTIFTDAKESSTVFELKRKLEG--ILKRPVNEQRLYKMDTEQLLDDGKT-----LGDCGFTSQ 67 (110)
T ss_pred eeeeeeecceeEEeecCccccHHHHHHHHHH--HHhCCCcchheeecCHHHHhhccch-----hhhcccccc
Confidence 4444444544466789999999999999988 88899999999763 3 46677666 999988643
No 56
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=97.25 E-value=0.00082 Score=45.05 Aligned_cols=69 Identities=20% Similarity=0.225 Sum_probs=48.1
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCC---C---ceEEE-ecCeecCCCCCCCCCCccccCCCCCC
Q 032671 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPI---E---NLRLV-FRGKVLDDTQDDDDRDDVYLQLSNGD 82 (136)
Q Consensus 10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~---~---~QRLI-~~GK~L~D~~t~d~~~L~~~~I~dG~ 82 (136)
+.|+|....+.. +.+.++.+.+|.+|...|.+ ..+.+. . .-+|. -+|..|.++.+ |.++||.+|+
T Consensus 3 ~rVtv~~~~~~~-~Dl~lP~~vpv~~li~~l~~--~~~~~~~~~~~~~~~~L~~~~g~~L~~~~t-----L~~~gV~dGd 74 (79)
T PF08817_consen 3 CRVTVDAGNGRQ-VDLALPADVPVAELIPELVE--LLGLPGDDPPGHGQWVLARAGGRPLDPDQT-----LADAGVRDGD 74 (79)
T ss_dssp EEEEEE-TT--E-EEEEEETTSBTTHHHHHHHH--HS---S---TT-E-EEEG-GGTEEEETTSB-----CGGGT--TT-
T ss_pred EEEEEEcCCCcE-EEEEcCCCCcHHHHHHHHHH--HhCCccCCCCCcceEEEEecCCcccCCcCc-----HhHcCCCCCC
Confidence 577888765333 78999999999999999988 665532 2 24555 67999999888 9999999999
Q ss_pred EEEE
Q 032671 83 SVIA 86 (136)
Q Consensus 83 tIlv 86 (136)
.+++
T Consensus 75 ~L~L 78 (79)
T PF08817_consen 75 VLVL 78 (79)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9954
No 57
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=0.0025 Score=50.98 Aligned_cols=110 Identities=14% Similarity=0.242 Sum_probs=70.6
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEE-EecC-eecCCCCCCCCCCccccCCCCCCEEEEE
Q 032671 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRL-VFRG-KVLDDTQDDDDRDDVYLQLSNGDSVIAA 87 (136)
Q Consensus 10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRL-I~~G-K~L~D~~t~d~~~L~~~~I~dG~tIlv~ 87 (136)
+.|.|-+.....+....++++.||.+||.+++. .+|.+++..+| +|.| -...-...+++..|..|+..+|-.|.|.
T Consensus 2 v~v~Iss~~~~~~~Ekr~~~~ltl~q~K~KLe~--~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihvi 79 (234)
T KOG3206|consen 2 VRVVISSSLNDFRTEKRLSNSLTLAQFKDKLEL--LTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVI 79 (234)
T ss_pred eEEEEecccccchhhhhcCCcCcHHHHHhhhhh--hhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEE
Confidence 567777766654455788999999999999988 99999999999 4766 1222222234456999999999888544
Q ss_pred e-cCCCCCccccccc-----CCCCcccccccccCCCChHHHHHH
Q 032671 88 V-KPKPPPRHLRDDT-----CIDDDDLDLKFKLPQSTSRWKRKL 125 (136)
Q Consensus 88 ~-~p~~~~~~~~~~~-----~~~~~~~~~~~~~p~~~~~~~~~~ 125 (136)
- .+.+-.+ ..|.+ ++.++|=. +=.+|-.+|+.+-
T Consensus 80 D~~~~~~~~-~~d~s~veky~iSee~Y~---qRtdSvr~~kk~~ 119 (234)
T KOG3206|consen 80 DSNAQSISN-TEDESIVEKYEISEEDYL---QRTDSVRRFKKKH 119 (234)
T ss_pred ecCcccccc-ccccccceeeecCHHHHh---hhhHHHHHHHHHh
Confidence 3 3333222 22222 33333322 2245777887653
No 58
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=96.84 E-value=0.002 Score=52.98 Aligned_cols=74 Identities=19% Similarity=0.172 Sum_probs=54.2
Q ss_pred eEEEEEeCCCCCcEE-EEecCCCcHHHHHHHHHhccCCCCCCCceE----EEecCeecCCCCCCCCCCccccCCCCCCEE
Q 032671 10 VEITVKTIGPAPPSR-LSVSSPIKVRDLRKLIATSSANHLPIENLR----LVFRGKVLDDTQDDDDRDDVYLQLSNGDSV 84 (136)
Q Consensus 10 m~I~VKt~~~~~~~~-v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QR----LI~~GK~L~D~~t~d~~~L~~~~I~dG~tI 84 (136)
|+|++.+.++...+. ..++...|+.|+++.+++ ...++.+.++| +-.+|+.+.|+.+ |++|+..+|++|
T Consensus 1 m~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~-~~~k~~~~~~r~tlr~e~kgkpl~~~s~-----l~e~~~~s~~~i 74 (297)
T KOG1639|consen 1 MEITIASRSKGLRIKEKDLSGSETIDDLLKAISA-KNLKITPYRIRLTLRVEPKGKPLIDNSK-----LQEYGDGSGATI 74 (297)
T ss_pred CceeeeccCCCceeeeecCCCCCcHHHHHHHHHH-hhhccCccchhheeeccCCCccccchhH-----HHHhccCCCCEE
Confidence 567888776644244 455567899999987775 24466664433 3456999998888 999999999999
Q ss_pred EEEec
Q 032671 85 IAAVK 89 (136)
Q Consensus 85 lv~~~ 89 (136)
+|+--
T Consensus 75 ~vKDL 79 (297)
T KOG1639|consen 75 YVKDL 79 (297)
T ss_pred EEecc
Confidence 88753
No 59
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=96.81 E-value=0.016 Score=38.65 Aligned_cols=75 Identities=9% Similarity=0.126 Sum_probs=58.0
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEE--ecCeecCCCCCCCCCCccccCCCCCCEEE
Q 032671 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLV--FRGKVLDDTQDDDDRDDVYLQLSNGDSVI 85 (136)
Q Consensus 8 ~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI--~~GK~L~D~~t~d~~~L~~~~I~dG~tIl 85 (136)
...+|.||..+|+. +....+.+.||.+|.+-|.. ..+.......|+ |--+.+.++.. +.+|.++|+..+.+|+
T Consensus 3 ~~~~I~iRlPdG~r-i~~~F~~~~tl~~v~~~v~~--~~~~~~~~f~L~t~~Prk~l~~~d~--~~tL~e~gL~p~~~l~ 77 (80)
T smart00166 3 DQCRLQIRLPDGSR-LVRRFPSSDTLRTVYEFVSA--ALTDGNDPFTLNSPFPRRTFTKDDY--SKTLLELALLPSSTLV 77 (80)
T ss_pred CeEEEEEEcCCCCE-EEEEeCCCCcHHHHHHHHHH--cccCCCCCEEEEeCCCCcCCccccc--cCCHHHCCCCCceEEE
Confidence 56789999999987 77899999999999999965 556666677775 55666754321 3569999999888887
Q ss_pred EE
Q 032671 86 AA 87 (136)
Q Consensus 86 v~ 87 (136)
|.
T Consensus 78 v~ 79 (80)
T smart00166 78 LE 79 (80)
T ss_pred Ee
Confidence 63
No 60
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=96.68 E-value=0.029 Score=37.11 Aligned_cols=72 Identities=22% Similarity=0.292 Sum_probs=53.7
Q ss_pred ceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEE--ecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032671 9 SVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLV--FRGKVLDDTQDDDDRDDVYLQLSNGDSVIA 86 (136)
Q Consensus 9 ~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI--~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv 86 (136)
+.+|.||..+|+. +....+.+.||.+|.+-|.. .+.......|+ |-.+.+.++ +.+.+|.++||. .+++++
T Consensus 2 ~t~i~iRlpdG~~-~~~~F~~~~tl~~l~~fv~~---~~~~~~~f~L~t~~Pr~~~~~~--~~~~TL~e~gL~-~s~~~~ 74 (77)
T cd01767 2 TTKIQIRLPDGKR-LEQRFNSTHKLSDVRDFVES---NGPPAEPFTLMTSFPRRVLTDL--DYELTLQEAGLV-NEVVFQ 74 (77)
T ss_pred cEEEEEEcCCCCE-EEEEeCCCCCHHHHHHHHHH---cCCCCCCEEEEeCCCCccCCCC--CccCcHHHcCCc-cceEEE
Confidence 4689999999976 77899999999999999975 33335667776 556777653 234679999999 555554
Q ss_pred E
Q 032671 87 A 87 (136)
Q Consensus 87 ~ 87 (136)
.
T Consensus 75 ~ 75 (77)
T cd01767 75 R 75 (77)
T ss_pred E
Confidence 3
No 61
>COG5417 Uncharacterized small protein [Function unknown]
Probab=96.63 E-value=0.013 Score=40.01 Aligned_cols=69 Identities=12% Similarity=0.229 Sum_probs=56.0
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCC---CceEEEecCeecCCCCCCCCCCccccCCCCCCEE
Q 032671 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPI---ENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV 84 (136)
Q Consensus 10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~---~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI 84 (136)
++|-++.-+++. +.+.++...++..|-..+.++.+-.+++ ...|..-+++.|.++.. |.+|+|.+||.+
T Consensus 7 VTvD~t~y~g~~-yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~llsgd~k-----L~d~~IadGD~L 78 (81)
T COG5417 7 VTVDFTNYNGGT-YDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLSGDDK-----LIDYQIADGDIL 78 (81)
T ss_pred EEEEeEecCCce-EEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEecCCce-----EEeccccCCCEE
Confidence 455566777765 8899999999999998888844444443 34899999999999888 999999999988
No 62
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=96.34 E-value=0.062 Score=36.80 Aligned_cols=76 Identities=16% Similarity=0.116 Sum_probs=58.4
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecC--eecCCC---CCCCCCCccccCCCCC
Q 032671 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRG--KVLDDT---QDDDDRDDVYLQLSNG 81 (136)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~G--K~L~D~---~t~d~~~L~~~~I~dG 81 (136)
...++|.||.++|+. +.-....+.||.+|..-|.. .+..++...|+++= |.+..- ..+.+.||.+.||.+.
T Consensus 2 ~~~~~I~iRlp~G~R-l~rrF~~~~tl~~l~~fv~~---~~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s 77 (85)
T cd01774 2 PDTVKIVFKLPNGTR-VERRFLFTQSLRVIHDFLFS---LKETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNS 77 (85)
T ss_pred CceEEEEEECCCCCE-EEEEeCCCCcHHHHHHHHHh---CCCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCc
Confidence 457899999999987 77789999999999999964 45677889998654 677421 2233457999999988
Q ss_pred CEEEE
Q 032671 82 DSVIA 86 (136)
Q Consensus 82 ~tIlv 86 (136)
.+|+|
T Consensus 78 ~~L~V 82 (85)
T cd01774 78 EVLFV 82 (85)
T ss_pred cEEEE
Confidence 87765
No 63
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.03 E-value=0.013 Score=47.08 Aligned_cols=55 Identities=20% Similarity=0.254 Sum_probs=48.0
Q ss_pred EEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE
Q 032671 23 SRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV 84 (136)
Q Consensus 23 ~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI 84 (136)
+.+.++.-.|++++|.+++. +.++++--|+++|+|+.|-|... |..|+|..|...
T Consensus 159 ~~lta~~~Dtv~eik~~L~A--aeg~D~~sQrif~Sg~~l~dkt~-----LeEc~iekg~rY 213 (231)
T KOG0013|consen 159 FWLTAPHYDTVGEIKRALRA--AEGVDPLSQRIFFSGGVLVDKTD-----LEECKIEKGQRY 213 (231)
T ss_pred eeecccCcCcHHHHHHHHHH--hhccchhhheeeccCCceecccc-----ceeeeecCCCEE
Confidence 44666677899999999998 99999999999999999987766 999999999544
No 64
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=96.02 E-value=0.092 Score=35.18 Aligned_cols=73 Identities=12% Similarity=0.170 Sum_probs=55.1
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEE--ecCeecCCCCCCCCCCccccCCCCCCEEE
Q 032671 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLV--FRGKVLDDTQDDDDRDDVYLQLSNGDSVI 85 (136)
Q Consensus 8 ~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI--~~GK~L~D~~t~d~~~L~~~~I~dG~tIl 85 (136)
...+|.||..+|+. +.-..+.+.|+.+|.+-|.. .. .......|+ |--|.+.++. -+.+|.++|+.+..+|+
T Consensus 3 ~~~~i~iRlp~G~~-~~~~F~~~~tl~~v~~fV~~--~~-~~~~~f~L~t~fPrk~~~~~d--~~~TL~elgL~Psa~L~ 76 (79)
T cd01772 3 TETRIQIRLLDGTT-LKQTFKAREQLAAVRLFVEL--NT-GNGGPFTLMTPFPRKVFTEDD--MEKPLQELGLVPSAVLI 76 (79)
T ss_pred cEEEEEEECCCCCE-EEEEeCCCChHHHHHHHHHH--cC-CCCCCEEEEeCCCCeECCccc--ccCCHHHCCCCCceEEE
Confidence 34789999999976 77789999999999999976 33 223557776 6677775432 13569999999988886
Q ss_pred E
Q 032671 86 A 86 (136)
Q Consensus 86 v 86 (136)
|
T Consensus 77 v 77 (79)
T cd01772 77 V 77 (79)
T ss_pred E
Confidence 5
No 65
>KOG3249 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.98 E-value=0.0051 Score=47.54 Aligned_cols=81 Identities=46% Similarity=0.732 Sum_probs=55.2
Q ss_pred HHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEecCCCCCcccccccCCCCccccccc
Q 032671 33 VRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAVKPKPPPRHLRDDTCIDDDDLDLKF 112 (136)
Q Consensus 33 V~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~~~p~~~~~~~~~~~~~~~~~~~~~~ 112 (136)
.+++++++++ + | |++..|...+|+.+.++...++. ...+++-.++.+.+.|.|++ .+-.+++++...+
T Consensus 8 lR~~Rk~k~~--k-~-~v~~~k~~lr~~~~qttg~~~d~---~itlK~~p~f~~a~~~npr~-----es~~~~~~e~v~e 75 (181)
T KOG3249|consen 8 LRDLRKAKAE--K-G-PVSTLKMKLRGKALQTTGDGDDL---YITLKDQPSFIVAVIPNPRA-----ESFDDDDDEDVPE 75 (181)
T ss_pred HHHHHHHhhc--c-C-chhhcchHHHHHHhcCCCCCccc---eeeeecCCcceeeecCCCch-----hhccCCccccCch
Confidence 4566666655 3 3 89999999999999876663332 22355555565555555554 2233456677999
Q ss_pred ccCCCChHHHHHH
Q 032671 113 KLPQSTSRWKRKL 125 (136)
Q Consensus 113 ~~p~~~~~~~~~~ 125 (136)
+.|++.++|.|++
T Consensus 76 ~qP~~St~~t~k~ 88 (181)
T KOG3249|consen 76 KQPPSSTRWTRKL 88 (181)
T ss_pred hcCCccccccccc
Confidence 9999999999976
No 66
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=95.93 E-value=0.076 Score=35.80 Aligned_cols=70 Identities=20% Similarity=0.237 Sum_probs=53.5
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCC-CCCCceEEE--ecCeecCCCCCCCCCCccccCCCCCCEE
Q 032671 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANH-LPIENLRLV--FRGKVLDDTQDDDDRDDVYLQLSNGDSV 84 (136)
Q Consensus 8 ~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~g-i~~~~QRLI--~~GK~L~D~~t~d~~~L~~~~I~dG~tI 84 (136)
.+.+|.||..+|+. +....+.+.||++|.+-|.. ..+ .......|+ |-.|.|.|+ +.+|.++|+.+ +.|
T Consensus 3 p~t~iqiRlpdG~r-~~~rF~~~~tv~~l~~~v~~--~~~~~~~~~f~L~t~fP~k~l~~~----~~Tl~eagL~~-s~v 74 (79)
T cd01770 3 PTTSIQIRLADGKR-LVQKFNSSHRVSDVRDFIVN--ARPEFAARPFTLMTAFPVKELSDE----SLTLKEANLLN-AVI 74 (79)
T ss_pred CeeEEEEECCCCCE-EEEEeCCCCcHHHHHHHHHH--hCCCCCCCCEEEecCCCCcccCCC----CCcHHHCCCcC-cEE
Confidence 46789999999987 77899999999999999976 432 223557775 678888654 46799999996 444
Q ss_pred E
Q 032671 85 I 85 (136)
Q Consensus 85 l 85 (136)
+
T Consensus 75 ~ 75 (79)
T cd01770 75 V 75 (79)
T ss_pred E
Confidence 3
No 67
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=95.76 E-value=0.16 Score=34.36 Aligned_cols=74 Identities=15% Similarity=0.195 Sum_probs=59.3
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEE--ecCeecCCCCCCCCCCccccCCCCCCEE
Q 032671 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLV--FRGKVLDDTQDDDDRDDVYLQLSNGDSV 84 (136)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI--~~GK~L~D~~t~d~~~L~~~~I~dG~tI 84 (136)
...++|.||.++|+. +.-....+.|+.+|-.-|.. .|.++...+|+ |-=|.+.+.. -+.+|.++|+....+|
T Consensus 2 ~~~~~i~iRlP~G~r-~~rrF~~t~~L~~l~~fv~~---~~~~~~~f~L~t~fPRk~~~~~d--~~~TL~e~gL~p~~~L 75 (80)
T cd01771 2 EPISKLRVRTPSGDF-LERRFLGDTPLQVLLNFVAS---KGYPIDEYKLLSSWPRRDLTQLD--PNFTLLELKLYPQETL 75 (80)
T ss_pred CCeEEEEEECCCCCE-EEEEeCCCCcHHHHHHHHHh---cCCCCCCEEEecCCCCCCCcCCC--CCCcHHHcCCCCCcEE
Confidence 467899999999976 66789999999999998865 47888899996 6677774221 2357999999998888
Q ss_pred EE
Q 032671 85 IA 86 (136)
Q Consensus 85 lv 86 (136)
+|
T Consensus 76 ~V 77 (80)
T cd01771 76 IL 77 (80)
T ss_pred EE
Confidence 76
No 68
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=95.73 E-value=0.028 Score=36.94 Aligned_cols=55 Identities=15% Similarity=0.085 Sum_probs=39.9
Q ss_pred EEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE
Q 032671 23 SRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV 84 (136)
Q Consensus 23 ~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI 84 (136)
..|.+.+++|+.++=+..-+ ++++++++-.|.|++|.++-+.+ +.-.||-+|.++
T Consensus 9 ~~vkvtp~~~l~~VL~eac~--k~~l~~~~~~L~h~~k~ldlslp-----~R~snL~n~akL 63 (65)
T PF11470_consen 9 FKVKVTPNTTLNQVLEEACK--KFGLDPSSYDLKHNNKPLDLSLP-----FRLSNLPNNAKL 63 (65)
T ss_dssp EEE---TTSBHHHHHHHHHH--HTT--GGG-EEEETTEEESSS-B-----HHHH---SS-EE
T ss_pred EEEEECCCCCHHHHHHHHHH--HcCCCccceEEEECCEEeccccc-----eeecCCCCCCEE
Confidence 77999999999999888877 99999999999999999987777 889999999987
No 69
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=94.89 E-value=0.13 Score=36.37 Aligned_cols=66 Identities=18% Similarity=0.316 Sum_probs=54.9
Q ss_pred EEEEEeC--CCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE
Q 032671 11 EITVKTI--GPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV 84 (136)
Q Consensus 11 ~I~VKt~--~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI 84 (136)
.|.+|.. ++.. +.+.|-..+|..-|-.+.+. ..|-..+..|++|.|+.+.-++| -.+++..+++.|
T Consensus 24 hinLkvv~qd~te-lfFkiKktT~f~klm~af~~--rqGK~m~slRfL~dG~rI~~dqT-----P~dldmEdnd~i 91 (103)
T COG5227 24 HINLKVVDQDGTE-LFFKIKKTTTFKKLMDAFSR--RQGKNMSSLRFLFDGKRIDLDQT-----PGDLDMEDNDEI 91 (103)
T ss_pred ccceEEecCCCCE-EEEEEeccchHHHHHHHHHH--HhCcCcceeEEEEcceecCCCCC-----hhhcCCccchHH
Confidence 3445544 4433 66788889999999999988 89999999999999999988888 999999999887
No 70
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=94.76 E-value=0.53 Score=32.27 Aligned_cols=74 Identities=14% Similarity=0.198 Sum_probs=59.3
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEE--ecCeecCCCCCCCCCCccccCCCCCCEE
Q 032671 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLV--FRGKVLDDTQDDDDRDDVYLQLSNGDSV 84 (136)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI--~~GK~L~D~~t~d~~~L~~~~I~dG~tI 84 (136)
...-+|.||.++|+. ..-....+.++.+|-.-|.. .|.+++..+|+ |-=|.+..+.. +.+|.++|+.+..+|
T Consensus 3 ~~~t~i~vRlP~G~r-~~rrF~~~~~L~~v~~fv~~---~g~~~~~f~L~t~FPRr~~~~~d~--~~TL~e~GL~P~~~L 76 (82)
T cd01773 3 GPKARLMLRYPDGKR-EQIALPEQAKLLALVRHVQS---KGYPNERFELLTNFPRRKLSHLDY--DITLQEAGLCPQETV 76 (82)
T ss_pred CCeeEEEEECCCCCE-EEEEeCCCCcHHHHHHHHHh---cCCCCCCEEEecCCCCcccCCccc--CCCHHHcCCCCCcEE
Confidence 356789999999987 77788888999999988765 57889999997 55777743322 357999999999999
Q ss_pred EE
Q 032671 85 IA 86 (136)
Q Consensus 85 lv 86 (136)
+|
T Consensus 77 fV 78 (82)
T cd01773 77 FV 78 (82)
T ss_pred EE
Confidence 76
No 71
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=93.89 E-value=0.28 Score=37.78 Aligned_cols=66 Identities=21% Similarity=0.229 Sum_probs=47.1
Q ss_pred eEEEEEeCCCC---CcEEEEecCCCcHHHHHHHHHhccCCCCCCCce-EEEe-cCeec--CCCCCCCCCCccccCCCCCC
Q 032671 10 VEITVKTIGPA---PPSRLSVSSPIKVRDLRKLIATSSANHLPIENL-RLVF-RGKVL--DDTQDDDDRDDVYLQLSNGD 82 (136)
Q Consensus 10 m~I~VKt~~~~---~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~Q-RLI~-~GK~L--~D~~t~d~~~L~~~~I~dG~ 82 (136)
|+|.|++..+. .++.+.+++++||.+|+..|.. ..++++..| -|.+ .++.| .++.. ++.+.-.+.+
T Consensus 1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~--~~~~~~~~~~~L~~~~n~~l~~~~~~~-----~s~l~~~~~~ 73 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSE--RLPIPSSSQLYLTTNSNGQLSPSSDIP-----LSSLLSSSQD 73 (162)
T ss_pred CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHh--hcCCCccceeEEEEeCCCeeCCCcccc-----HHhhccCcCC
Confidence 68999999995 3377899999999999999998 888888884 3444 35555 23333 6655544443
No 72
>PRK06437 hypothetical protein; Provisional
Probab=93.30 E-value=0.83 Score=29.69 Aligned_cols=48 Identities=17% Similarity=0.248 Sum_probs=37.9
Q ss_pred EEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EE
Q 032671 23 SRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IA 86 (136)
Q Consensus 23 ~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI-lv 86 (136)
..++++...||.+|= + ..+++++..-+...|+.+.. ++-|++||+| ++
T Consensus 13 ~~~~i~~~~tv~dLL---~---~Lgi~~~~vaV~vNg~iv~~----------~~~L~dgD~Veiv 61 (67)
T PRK06437 13 KTIEIDHELTVNDII---K---DLGLDEEEYVVIVNGSPVLE----------DHNVKKEDDVLIL 61 (67)
T ss_pred eEEEcCCCCcHHHHH---H---HcCCCCccEEEEECCEECCC----------ceEcCCCCEEEEE
Confidence 568888889998884 3 36788899999999999963 3368999999 54
No 73
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=92.35 E-value=0.65 Score=30.77 Aligned_cols=65 Identities=17% Similarity=0.141 Sum_probs=40.0
Q ss_pred eEEEEEeCC------CCCcEEEEecCCCcHHHHHHHHHhccCC-CCCC--CceEEEecCeecCCCCCCCCCCccccCCCC
Q 032671 10 VEITVKTIG------PAPPSRLSVSSPIKVRDLRKLIATSSAN-HLPI--ENLRLVFRGKVLDDTQDDDDRDDVYLQLSN 80 (136)
Q Consensus 10 m~I~VKt~~------~~~~~~v~v~~~~TV~eLK~~Ia~~~~~-gi~~--~~QRLI~~GK~L~D~~t~d~~~L~~~~I~d 80 (136)
|+|+|+... +.....++++..+|+.+|.+.+.. .. ++.. ..-.+..+|+...+ +.-|++
T Consensus 2 m~i~V~~fa~~re~~g~~~~~~~~~~~~tv~~L~~~l~~--~~p~l~~~~~~~~vavN~~~v~~----------~~~l~d 69 (82)
T PLN02799 2 VEIKVLFFARARELTGVSDMTLELPAGSTTADCLAELVA--KFPSLEEVRSCCVLALNEEYTTE----------SAALKD 69 (82)
T ss_pred eEEEEEehHHHHHHhCCCeEEEECCCCCcHHHHHHHHHH--HChhHHHHhhCcEEEECCEEcCC----------CcCcCC
Confidence 677887432 333356788888999999999976 43 1111 11234556666532 235899
Q ss_pred CCEEEE
Q 032671 81 GDSVIA 86 (136)
Q Consensus 81 G~tIlv 86 (136)
||+|-+
T Consensus 70 gDeVai 75 (82)
T PLN02799 70 GDELAI 75 (82)
T ss_pred CCEEEE
Confidence 999944
No 74
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=92.27 E-value=0.2 Score=43.12 Aligned_cols=62 Identities=16% Similarity=0.233 Sum_probs=54.2
Q ss_pred EEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEec
Q 032671 23 SRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAVK 89 (136)
Q Consensus 23 ~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~~~ 89 (136)
+.+++..+..+..|+..++. .++++.+..-|+|+++.+..... .++..+|+++|+++++-.+
T Consensus 15 ~~i~v~~dg~L~nl~aL~~~--d~g~~~~~~~li~n~~~l~s~~s---~~l~Q~g~~~~dsl~lr~k 76 (380)
T KOG0012|consen 15 FPIPVTTDGELNNLAALCWK--DTGIVYDPSDLIYNPRPLVSNES---QGLTQIGLKDGDSLALRCK 76 (380)
T ss_pred eccccccccchhhHHHHHHH--HhCcccchhhcccCCCccccchh---hhhhhcccccceeEeccCC
Confidence 67888888999999999988 99999999999999999986644 5699999999999976554
No 75
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.86 E-value=0.6 Score=40.07 Aligned_cols=63 Identities=17% Similarity=0.265 Sum_probs=48.9
Q ss_pred EEEecCCCcHHHHHHHHHhccCCCCCCCceEEEec---CeecCCCCCCCCCCccccCCCCCCEEEEEe
Q 032671 24 RLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFR---GKVLDDTQDDDDRDDVYLQLSNGDSVIAAV 88 (136)
Q Consensus 24 ~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~---GK~L~D~~t~d~~~L~~~~I~dG~tIlv~~ 88 (136)
...|.-.-||.+|+..+.. +-|+.+.+.||+|= ||.-..+..+-++-|..|+|++||.++|-.
T Consensus 351 s~~I~~~~TV~D~~~~Ld~--~VGvk~trMkLf~L~eD~rt~~~ss~~~N~~L~~fkIedGDs~lvqe 416 (418)
T KOG2982|consen 351 SGLICMTRTVLDFMKILDP--KVGVKFTRMKLFLLREDGRTDDFSSSDYNMPLHYFKIEDGDSFLVQE 416 (418)
T ss_pred ceEEEeehHHHHHHHHhcc--ccccccceeEEEEEcccCccCCccccCCCCcceEEeccCCCEeeeec
Confidence 3556666799999999988 99999999999874 555444444445679999999999997643
No 76
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=91.70 E-value=2.1 Score=27.84 Aligned_cols=60 Identities=20% Similarity=0.220 Sum_probs=41.6
Q ss_pred ceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EE
Q 032671 9 SVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IA 86 (136)
Q Consensus 9 ~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI-lv 86 (136)
+|+|++.... ....++++...|+.+|-+. .++++..-.+...|..... +.-+++||.| ++
T Consensus 4 mm~v~vng~~--~~~~~~~~~~~tv~~ll~~------l~~~~~~v~v~vNg~iv~~----------~~~l~~gD~Veii 64 (70)
T PRK08364 4 MIRVKVIGRG--IEKEIEWRKGMKVADILRA------VGFNTESAIAKVNGKVALE----------DDPVKDGDYVEVI 64 (70)
T ss_pred EEEEEEeccc--cceEEEcCCCCcHHHHHHH------cCCCCccEEEEECCEECCC----------CcCcCCCCEEEEE
Confidence 3566664432 2256788888999988654 4566777777888988843 3368999999 54
No 77
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=91.68 E-value=0.49 Score=31.71 Aligned_cols=58 Identities=26% Similarity=0.352 Sum_probs=43.4
Q ss_pred ecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCcccc-CCCCCCEEEEEecC
Q 032671 27 VSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYL-QLSNGDSVIAAVKP 90 (136)
Q Consensus 27 v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~-~I~dG~tIlv~~~p 90 (136)
|+++.+|.++++.++. ......-....|.++|+.|.+... |+++ |+++|.+|-++-+|
T Consensus 1 v~~~d~v~dvrq~L~~-~~~t~~~Tn~~L~~~g~~L~~~~e-----l~~i~~~~~~~~L~lve~p 59 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAE-SPETCYLTNFSLEHNGQRLDDFVE-----LSEIEGIKDGCVLELVEEP 59 (76)
T ss_pred CChhhHHHHHHHHHHh-CccccceeEEEEEECCCccCCchh-----hhhhhCCCCCcEEEEEecC
Confidence 4677899999999987 222356667899999999977666 7666 58999999555444
No 78
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=91.01 E-value=0.91 Score=31.11 Aligned_cols=38 Identities=18% Similarity=0.360 Sum_probs=34.2
Q ss_pred cEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCee
Q 032671 22 PSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKV 61 (136)
Q Consensus 22 ~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~ 61 (136)
.+.+.++++.+..+|.++|.+ +.++|++..+|-|+-..
T Consensus 12 tIaIrvp~~~~y~~L~~ki~~--kLkl~~e~i~LsYkde~ 49 (80)
T cd06406 12 TVAIQVARGLSYATLLQKISS--KLELPAEHITLSYKSEA 49 (80)
T ss_pred EEEEEcCCCCCHHHHHHHHHH--HhCCCchhcEEEeccCC
Confidence 378999999999999999999 99999999999998543
No 79
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=90.84 E-value=0.84 Score=29.84 Aligned_cols=45 Identities=27% Similarity=0.403 Sum_probs=35.8
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEec
Q 032671 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFR 58 (136)
Q Consensus 10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~ 58 (136)
++|+++. +...+.+.++.+.|..+|+.+|.+ +++.+.+..+|-|.
T Consensus 2 ~~vK~~~--~~~~~~~~~~~~~s~~dL~~~i~~--~~~~~~~~~~l~Y~ 46 (81)
T smart00666 2 VDVKLRY--GGETRRLSVPRDISFEDLRSKVAK--RFGLDNQSFTLKYQ 46 (81)
T ss_pred ccEEEEE--CCEEEEEEECCCCCHHHHHHHHHH--HhCCCCCCeEEEEE
Confidence 4566666 333377899999999999999999 88887777888777
No 80
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=90.56 E-value=0.79 Score=31.73 Aligned_cols=44 Identities=16% Similarity=0.098 Sum_probs=35.7
Q ss_pred EEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCC---ceEEEe
Q 032671 11 EITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIE---NLRLVF 57 (136)
Q Consensus 11 ~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~---~QRLI~ 57 (136)
..++|+++|.. +.+.+.+++.+.+|++.|++ +.|+... ...|-|
T Consensus 2 ~FK~~~~~Grv-hRf~~~~s~~~~~L~~~I~~--Rl~~d~~~~~~~~L~Y 48 (86)
T cd06409 2 AFKFKDPKGRV-HRFRLRPSESLEELRTLISQ--RLGDDDFETHLYALSY 48 (86)
T ss_pred cEEeeCCCCCE-EEEEecCCCCHHHHHHHHHH--HhCCccccCCcccEEE
Confidence 35788887755 88999999999999999999 9998874 455555
No 81
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=89.66 E-value=2.7 Score=26.98 Aligned_cols=46 Identities=17% Similarity=0.289 Sum_probs=35.1
Q ss_pred EEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 032671 24 RLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAA 87 (136)
Q Consensus 24 ~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~ 87 (136)
.+++..++|+.+||.++.. .+ + -+||.|=..+++. -|++||.|++.
T Consensus 9 ~~~~~~~~tl~~lr~~~k~--~~----D--I~I~NGF~~~~d~----------~L~e~D~v~~I 54 (57)
T PF14453_consen 9 EIETEENTTLFELRKESKP--DA----D--IVILNGFPTKEDI----------ELKEGDEVFLI 54 (57)
T ss_pred EEEcCCCcCHHHHHHhhCC--CC----C--EEEEcCcccCCcc----------ccCCCCEEEEE
Confidence 5788888999999998754 22 2 5799999987543 58899999654
No 82
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=89.40 E-value=2.3 Score=27.49 Aligned_cols=53 Identities=17% Similarity=0.230 Sum_probs=37.2
Q ss_pred EEEEecCCCcHHHHHHHHHhccCCCC----CCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 032671 23 SRLSVSSPIKVRDLRKLIATSSANHL----PIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAA 87 (136)
Q Consensus 23 ~~v~v~~~~TV~eLK~~Ia~~~~~gi----~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~ 87 (136)
..++++...||.+|.+.+.. ...- ......+...|+.... +.-|++||.|.++
T Consensus 18 ~~~~~~~~~tv~~ll~~l~~--~~~~~~~~~~~~~~v~vNg~~v~~----------~~~l~~gD~v~i~ 74 (80)
T cd00754 18 EELELPEGATVGELLDALEA--RYPGLLEELLARVRIAVNGEYVRL----------DTPLKDGDEVAII 74 (80)
T ss_pred EEEECCCCCcHHHHHHHHHH--HCchHHHhhhhcEEEEECCeEcCC----------CcccCCCCEEEEe
Confidence 56778778999999999987 5421 2334566677887752 2369999999443
No 83
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=89.04 E-value=1 Score=29.48 Aligned_cols=48 Identities=25% Similarity=0.340 Sum_probs=37.5
Q ss_pred ceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecC
Q 032671 9 SVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRG 59 (136)
Q Consensus 9 ~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~G 59 (136)
++.|++...+... ..+.++.+.|..+|+..|++ .++.+....+|-|..
T Consensus 1 t~~vK~~~~~~~~-~~~~~~~~~s~~~L~~~i~~--~~~~~~~~~~l~Y~D 48 (84)
T PF00564_consen 1 TVRVKVRYGGDIR-RIISLPSDVSFDDLRSKIRE--KFGLLDEDFQLKYKD 48 (84)
T ss_dssp SEEEEEEETTEEE-EEEEECSTSHHHHHHHHHHH--HHTTSTSSEEEEEEE
T ss_pred CEEEEEEECCeeE-EEEEcCCCCCHHHHHHHHHH--HhCCCCccEEEEeeC
Confidence 3566666655533 33899999999999999999 888888888888863
No 84
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=89.04 E-value=2.2 Score=27.36 Aligned_cols=51 Identities=16% Similarity=0.253 Sum_probs=38.2
Q ss_pred EEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EEE
Q 032671 24 RLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IAA 87 (136)
Q Consensus 24 ~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI-lv~ 87 (136)
..+++...|+.+| +. ..++++...-+.+.|..+..+.- ..+ +++||.| ++.
T Consensus 9 ~~~~~~~~tl~~l---l~---~l~~~~~~vav~~N~~iv~r~~~------~~~-L~~gD~ieIv~ 60 (65)
T PRK05863 9 QVEVDEQTTVAAL---LD---SLGFPEKGIAVAVDWSVLPRSDW------ATK-LRDGARLEVVT 60 (65)
T ss_pred EEEcCCCCcHHHH---HH---HcCCCCCcEEEEECCcCcChhHh------hhh-cCCCCEEEEEe
Confidence 3566777888777 43 36789999999999998875544 345 9999999 553
No 85
>PRK01777 hypothetical protein; Validated
Probab=88.23 E-value=5.5 Score=27.83 Aligned_cols=62 Identities=18% Similarity=0.151 Sum_probs=40.7
Q ss_pred ceEEEEEeCCCCCc--EEEEecCCCcHHHHHHHHHhccCCCCCCC-------ceEEEecCeecCCCCCCCCCCccccCCC
Q 032671 9 SVEITVKTIGPAPP--SRLSVSSPIKVRDLRKLIATSSANHLPIE-------NLRLVFRGKVLDDTQDDDDRDDVYLQLS 79 (136)
Q Consensus 9 ~m~I~VKt~~~~~~--~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~-------~QRLI~~GK~L~D~~t~d~~~L~~~~I~ 79 (136)
.|+|.|-....... ..++++..+||.++=.+ +|++.+ .-.+.-.|+...- +.-|+
T Consensus 3 ~i~v~V~ya~~~~~~~~~l~vp~GtTv~dal~~------sgi~~~~pei~~~~~~vgI~Gk~v~~----------d~~L~ 66 (95)
T PRK01777 3 KIRVEVVYALPERQYLQRLTLQEGATVEEAIRA------SGLLELRTDIDLAKNKVGIYSRPAKL----------TDVLR 66 (95)
T ss_pred eeEEEEEEECCCceEEEEEEcCCCCcHHHHHHH------cCCCccCcccccccceEEEeCeECCC----------CCcCC
Confidence 67888876544332 34789999999987443 455444 2356566777642 33689
Q ss_pred CCCEE-EE
Q 032671 80 NGDSV-IA 86 (136)
Q Consensus 80 dG~tI-lv 86 (136)
+||.| ++
T Consensus 67 dGDRVeIy 74 (95)
T PRK01777 67 DGDRVEIY 74 (95)
T ss_pred CCCEEEEe
Confidence 99999 65
No 86
>PRK07440 hypothetical protein; Provisional
Probab=88.04 E-value=4.2 Score=26.62 Aligned_cols=62 Identities=18% Similarity=0.215 Sum_probs=44.7
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EE
Q 032671 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IA 86 (136)
Q Consensus 8 ~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI-lv 86 (136)
.+|+|+|. |+ ..+++...||.+|-+ ..++++...-+-+.|..+.-+ . ..+.-+++||.| ++
T Consensus 3 ~~m~i~vN---G~---~~~~~~~~tl~~lL~------~l~~~~~~vav~~N~~iv~r~-~-----w~~~~L~~gD~IEIv 64 (70)
T PRK07440 3 NPITLQVN---GE---TRTCSSGTSLPDLLQ------QLGFNPRLVAVEYNGEILHRQ-F-----WEQTQVQPGDRLEIV 64 (70)
T ss_pred CceEEEEC---CE---EEEcCCCCCHHHHHH------HcCCCCCeEEEEECCEEeCHH-H-----cCceecCCCCEEEEE
Confidence 45666664 32 467778889888743 367788888889999998632 2 567789999999 55
Q ss_pred E
Q 032671 87 A 87 (136)
Q Consensus 87 ~ 87 (136)
.
T Consensus 65 ~ 65 (70)
T PRK07440 65 T 65 (70)
T ss_pred E
Confidence 3
No 87
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=87.18 E-value=1.6 Score=29.71 Aligned_cols=38 Identities=16% Similarity=0.176 Sum_probs=29.3
Q ss_pred CCCcEEEEecCCCcHHHHHHHHHhccCCCCCC-CceEEEec
Q 032671 19 PAPPSRLSVSSPIKVRDLRKLIATSSANHLPI-ENLRLVFR 58 (136)
Q Consensus 19 ~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~-~~QRLI~~ 58 (136)
+...+.+.+++++++.+|++.|+. ++++.. ....|=|.
T Consensus 8 ~~d~~r~~l~~~~~~~~L~~~i~~--r~~~~~~~~f~LkY~ 46 (82)
T cd06407 8 GEEKIRFRLPPSWGFTELKQEIAK--RFKLDDMSAFDLKYL 46 (82)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH--HhCCCCCCeeEEEEE
Confidence 334478999999999999999999 888764 45555554
No 88
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=86.26 E-value=2 Score=29.42 Aligned_cols=60 Identities=12% Similarity=0.188 Sum_probs=29.2
Q ss_pred EEecC-CCcHHHHHHHHHhccCCCCCCC----ceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032671 25 LSVSS-PIKVRDLRKLIATSSANHLPIE----NLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA 86 (136)
Q Consensus 25 v~v~~-~~TV~eLK~~Ia~~~~~gi~~~----~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv 86 (136)
+.++. .+|+++|-+.|-. .+.|+... ..+++|..-. .....--+++|+++||.+|+.|.|
T Consensus 2 v~~d~~~~TL~~lv~~Vlk-~~Lg~~~P~v~~~~~ilyd~de-~~~~~~l~k~L~elgi~~gs~L~v 66 (87)
T PF14732_consen 2 VKVDTKKMTLGDLVEKVLK-KKLGMNEPDVSVGGTILYDSDE-EEYDDNLPKKLSELGIVNGSILTV 66 (87)
T ss_dssp EEE-TTT-BHHHHHHHCCC-CCS--SSEEEEES-EEEE-SSS-SSSTTCTTSBGGGGT--TT-EEEE
T ss_pred EEEechhCcHHHHHHHHHH-hccCCCCCEEEeCCCEEEcCCc-chhhhcccCChhHcCCCCCCEEEE
Confidence 44554 4899999988743 13444432 2344444332 000111237899999999998865
No 89
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=86.13 E-value=2.8 Score=30.94 Aligned_cols=62 Identities=23% Similarity=0.372 Sum_probs=41.5
Q ss_pred EecC-CCcHHHHHHHHHhccC--CCCCC------CceEEEecCe---------ecCCCC------CCCCCCccccCCCCC
Q 032671 26 SVSS-PIKVRDLRKLIATSSA--NHLPI------ENLRLVFRGK---------VLDDTQ------DDDDRDDVYLQLSNG 81 (136)
Q Consensus 26 ~v~~-~~TV~eLK~~Ia~~~~--~gi~~------~~QRLI~~GK---------~L~D~~------t~d~~~L~~~~I~dG 81 (136)
.|+. +.||.+|++.+.+.+. .|++| +..|++++.. .|+++. .+++++|.++||.+.
T Consensus 21 ~vdL~~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~~~~tL~~~gv~nE 100 (122)
T PF10209_consen 21 NVDLKDTTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIYTKAHGSKTNNLVINLEDDEDWILDVSDDDKTLKELGVENE 100 (122)
T ss_pred cCCcccCcHHHHHHHHHHHHhcCCCCCCceeeecceEEEEecCCCCCcCCceeeccCCcceeeecCCCCCcHHHcCCCcc
Confidence 4776 7899999887765333 35555 3478876532 134443 246788999999999
Q ss_pred CEE-EEE
Q 032671 82 DSV-IAA 87 (136)
Q Consensus 82 ~tI-lv~ 87 (136)
..| ++.
T Consensus 101 TEiSfF~ 107 (122)
T PF10209_consen 101 TEISFFN 107 (122)
T ss_pred ceeeeeC
Confidence 888 543
No 90
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=85.60 E-value=6.8 Score=25.79 Aligned_cols=52 Identities=21% Similarity=0.332 Sum_probs=40.5
Q ss_pred EEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EEE
Q 032671 24 RLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IAA 87 (136)
Q Consensus 24 ~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI-lv~ 87 (136)
.++++...|+.+| +++ .+++++..-..+.|..+..+. -.+.-+++||.| ++.
T Consensus 11 ~~e~~~~~tv~dL---L~~---l~~~~~~vav~vNg~iVpr~~------~~~~~l~~gD~ievv~ 63 (68)
T COG2104 11 EVEIAEGTTVADL---LAQ---LGLNPEGVAVAVNGEIVPRSQ------WADTILKEGDRIEVVR 63 (68)
T ss_pred EEEcCCCCcHHHH---HHH---hCCCCceEEEEECCEEccchh------hhhccccCCCEEEEEE
Confidence 5778888899988 443 788899999999999996432 466689999999 554
No 91
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=85.28 E-value=7 Score=25.61 Aligned_cols=52 Identities=19% Similarity=0.281 Sum_probs=35.2
Q ss_pred EEEEecCC-CcHHHHHHHHHhccCCC-CC--CCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032671 23 SRLSVSSP-IKVRDLRKLIATSSANH-LP--IENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA 86 (136)
Q Consensus 23 ~~v~v~~~-~TV~eLK~~Ia~~~~~g-i~--~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv 86 (136)
..++++.+ +||.+|.+.+.+ ... +- .....+...|+...+ +.-|++||.|.+
T Consensus 18 ~~~~~~~~~~tv~~L~~~L~~--~~p~l~~~~~~~~v~vn~~~v~~----------~~~l~dgDevai 73 (80)
T TIGR01682 18 ETLELPDESTTVGELKEHLAK--EGPELAASRGQVMVAVNEEYVTD----------DALLNEGDEVAF 73 (80)
T ss_pred EEEECCCCCcCHHHHHHHHHH--hCchhhhhccceEEEECCEEcCC----------CcCcCCCCEEEE
Confidence 46788877 899999999987 542 11 122455566776653 347899999943
No 92
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=85.05 E-value=5.5 Score=25.09 Aligned_cols=52 Identities=21% Similarity=0.245 Sum_probs=38.0
Q ss_pred EEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EEE
Q 032671 24 RLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IAA 87 (136)
Q Consensus 24 ~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI-lv~ 87 (136)
.++++...|+.+|= . ..++++...-+.+.|..+.... ..+.-+++||.| ++.
T Consensus 9 ~~~~~~~~tl~~lL---~---~l~~~~~~vav~vNg~iv~r~~------~~~~~l~~gD~vei~~ 61 (66)
T PRK05659 9 PRELPDGESVAALL---A---REGLAGRRVAVEVNGEIVPRSQ------HASTALREGDVVEIVH 61 (66)
T ss_pred EEEcCCCCCHHHHH---H---hcCCCCCeEEEEECCeEeCHHH------cCcccCCCCCEEEEEE
Confidence 45777888988774 3 3678888888999998886321 455569999999 553
No 93
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=83.45 E-value=5.1 Score=25.37 Aligned_cols=51 Identities=16% Similarity=0.239 Sum_probs=38.3
Q ss_pred EEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EE
Q 032671 24 RLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IA 86 (136)
Q Consensus 24 ~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI-lv 86 (136)
.++++...|+.+|.+. .+++++...+.+.|+.+..+. ..+.-|++||+| ++
T Consensus 8 ~~~~~~~~tv~~ll~~------l~~~~~~i~V~vNg~~v~~~~------~~~~~L~~gD~V~ii 59 (65)
T cd00565 8 PREVEEGATLAELLEE------LGLDPRGVAVALNGEIVPRSE------WASTPLQDGDRIEIV 59 (65)
T ss_pred EEEcCCCCCHHHHHHH------cCCCCCcEEEEECCEEcCHHH------cCceecCCCCEEEEE
Confidence 4677888899988764 446778888899999986431 344579999999 44
No 94
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=82.63 E-value=5.7 Score=25.12 Aligned_cols=51 Identities=16% Similarity=0.217 Sum_probs=37.8
Q ss_pred EEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EE
Q 032671 24 RLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IA 86 (136)
Q Consensus 24 ~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI-lv 86 (136)
.++++...|+.+|.+. .+++++...+.+.|+.+..+. ..++-|++||.| ++
T Consensus 7 ~~~~~~~~tv~~ll~~------l~~~~~~v~v~vN~~iv~~~~------~~~~~L~~gD~veii 58 (64)
T TIGR01683 7 PVEVEDGLTLAALLES------LGLDPRRVAVAVNGEIVPRSE------WDDTILKEGDRIEIV 58 (64)
T ss_pred EEEcCCCCcHHHHHHH------cCCCCCeEEEEECCEEcCHHH------cCceecCCCCEEEEE
Confidence 4677888899988764 446677888889999985322 345679999999 54
No 95
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=81.19 E-value=4.9 Score=25.95 Aligned_cols=45 Identities=29% Similarity=0.339 Sum_probs=33.0
Q ss_pred EEEEEeCCCCCcEEEEec-CCCcHHHHHHHHHhccCCCCCCCceEEEecC
Q 032671 11 EITVKTIGPAPPSRLSVS-SPIKVRDLRKLIATSSANHLPIENLRLVFRG 59 (136)
Q Consensus 11 ~I~VKt~~~~~~~~v~v~-~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~G 59 (136)
.|+++..+. . +.+.++ .+.|..+|+.+|.+ .++.+....++-|..
T Consensus 2 ~vK~~~~~~-~-~~~~~~~~~~s~~~L~~~i~~--~~~~~~~~~~l~y~D 47 (81)
T cd05992 2 RVKVKYGGE-I-RRFVVVSRSISFEDLRSKIAE--KFGLDAVSFKLKYPD 47 (81)
T ss_pred cEEEEecCC-C-EEEEEecCCCCHHHHHHHHHH--HhCCCCCcEEEEeeC
Confidence 455555433 2 678888 88999999999998 888776566666654
No 96
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=79.03 E-value=7.3 Score=33.83 Aligned_cols=70 Identities=20% Similarity=0.181 Sum_probs=51.8
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEE--ecCeecCCCCCCCCCCccccCCCCCC
Q 032671 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLV--FRGKVLDDTQDDDDRDDVYLQLSNGD 82 (136)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI--~~GK~L~D~~t~d~~~L~~~~I~dG~ 82 (136)
..+-.|.||..+|+. +...++..-||.+++..|.. .+-+.+-.-|-|+ |--|.|.|+ +.||++.||.+--
T Consensus 303 ~PtTsIQIRLanG~R-lV~~fN~sHTv~DIR~fI~~-aRp~~~~~~F~L~~~FPpk~l~D~----sqTle~AgL~Nsv 374 (380)
T KOG2086|consen 303 EPTTSIQIRLANGTR-LVLKFNHSHTVSDIREFIDT-ARPGDSSTYFILMMAFPPKPLSDD----SQTLEEAGLLNSV 374 (380)
T ss_pred CCcceEEEEecCCce-eeeeccCcccHHHHHHHHHh-cCCCCcCCceeeeecCCCcccCCc----chhHHhccchhhh
Confidence 345789999999987 77788888999999999987 2334444456665 557777653 3469999998653
No 97
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=78.61 E-value=12 Score=25.59 Aligned_cols=52 Identities=17% Similarity=0.217 Sum_probs=38.7
Q ss_pred EEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EEE
Q 032671 24 RLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IAA 87 (136)
Q Consensus 24 ~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI-lv~ 87 (136)
..+++...||.+|= .. .++++...-+-+.|..+.-+ . ..+.-|++||.| ++.
T Consensus 27 ~~~~~~~~tl~~LL---~~---l~~~~~~vAVevNg~iVpr~-~-----w~~t~L~egD~IEIv~ 79 (84)
T PRK06083 27 SIQVDISSSLAQII---AQ---LSLPELGCVFAINNQVVPRS-E-----WQSTVLSSGDAISLFQ 79 (84)
T ss_pred EEEcCCCCcHHHHH---HH---cCCCCceEEEEECCEEeCHH-H-----cCcccCCCCCEEEEEE
Confidence 35677788888774 33 56788888888999999643 2 677789999999 553
No 98
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=77.10 E-value=13 Score=25.91 Aligned_cols=60 Identities=15% Similarity=0.093 Sum_probs=38.0
Q ss_pred EEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCe-----ecCCCCCCCCCCccccCCCCCCEEEEEec
Q 032671 23 SRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGK-----VLDDTQDDDDRDDVYLQLSNGDSVIAAVK 89 (136)
Q Consensus 23 ~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK-----~L~D~~t~d~~~L~~~~I~dG~tIlv~~~ 89 (136)
++...+...||+.+...+.+ .+.| ...-||=-.+- .|.+.+ .|+.+.+|.+|.+|++=.+
T Consensus 16 ~t~~FSk~DTI~~v~~~~rk--lf~i-~~E~RLW~~~~~~~~e~L~~~~----~Tv~da~L~~gQ~vliE~r 80 (88)
T PF14836_consen 16 LTKQFSKTDTIGFVEKEMRK--LFNI-QEETRLWNKYSENSYELLNNPE----ITVEDAGLYDGQVVLIEER 80 (88)
T ss_dssp EEEEE-TTSBHHHHHHHHHH--HCT--TS-EEEEEECTTTCEEEE--TT----SBTTTTT--TTEEEEEEE-
T ss_pred hHhhccccChHHHHHHHHHH--HhCC-CccceehhccCCcchhhhCCCC----ccHHHccCcCCCEEEEEee
Confidence 45677888999999999988 8999 66677743222 243332 3499999999999976543
No 99
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=76.01 E-value=17 Score=23.32 Aligned_cols=51 Identities=18% Similarity=0.229 Sum_probs=37.3
Q ss_pred EEecCC-CcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EEE
Q 032671 25 LSVSSP-IKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IAA 87 (136)
Q Consensus 25 v~v~~~-~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI-lv~ 87 (136)
.+++.. .||.+|=+ ..++++...-+-+.|..+..+ . ..+.-|++||.| ++.
T Consensus 10 ~~~~~~~~tv~~lL~------~l~~~~~~vav~vN~~iv~r~-~-----w~~~~L~~gD~iEIv~ 62 (67)
T PRK07696 10 IEVPESVKTVAELLT------HLELDNKIVVVERNKDILQKD-D-----HTDTSVFDGDQIEIVT 62 (67)
T ss_pred EEcCCCcccHHHHHH------HcCCCCCeEEEEECCEEeCHH-H-----cCceecCCCCEEEEEE
Confidence 456665 67877743 367788888889999999643 2 567789999999 553
No 100
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=75.80 E-value=0.87 Score=38.39 Aligned_cols=60 Identities=22% Similarity=0.548 Sum_probs=0.0
Q ss_pred CCceEEEEEeCCCCCcEEEEec---C--CCcHHHHHHHHHh----c----cCCCCCCCceE-----EEecCeecCCCCC
Q 032671 7 SESVEITVKTIGPAPPSRLSVS---S--PIKVRDLRKLIAT----S----SANHLPIENLR-----LVFRGKVLDDTQD 67 (136)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~v~v~---~--~~TV~eLK~~Ia~----~----~~~gi~~~~QR-----LI~~GK~L~D~~t 67 (136)
...|+|.+|+.-+.. +.+.++ + +.||.++|..+++ + ..+++|.+..| |+|+-|.+.|.++
T Consensus 76 ~~sItV~Lks~rnp~-l~i~L~~~~plattSv~dlk~~v~~rv~~~~~~~~~~~vp~dKik~~~~~lL~~kkPv~~~kt 153 (309)
T PF12754_consen 76 SKSITVHLKSLRNPP-LDISLPNVPPLATTSVQDLKDAVQQRVHPSQATYDETRVPLDKIKNFRCRLLYKKKPVGDSKT 153 (309)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred CceEEEEeecCCCCC-ceeEeCCCCcCCcCcHHHHHHHHHhhhcccccccccccCCHHHhhhhhhhheecCccCCCcCc
Confidence 356899999887654 444333 2 4789999999865 0 05678988888 9999999876666
No 101
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=74.68 E-value=18 Score=31.84 Aligned_cols=83 Identities=13% Similarity=0.128 Sum_probs=54.4
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCC------CCCceEEE-ecCeecCCCCCCCCCCccccCCCCCC
Q 032671 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHL------PIENLRLV-FRGKVLDDTQDDDDRDDVYLQLSNGD 82 (136)
Q Consensus 10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi------~~~~QRLI-~~GK~L~D~~t~d~~~L~~~~I~dG~ 82 (136)
.+|+|-.... . ..+-++.+..|.||--.|-+ ..+- .+..-.|. ..|..|+.+.+ |.+.+|.||+
T Consensus 3 ~RVtV~~~~~-~-~DlaLPa~~PvaellP~ll~--~~~~~~~~~~~~~~w~L~r~gG~pL~~~~s-----L~~~gV~DG~ 73 (452)
T TIGR02958 3 CRVTVLAGRR-A-VDVALPADVPVAELIPDLVD--LLDDRGAAELGAVRWALARAGGSPLDPDAS-----LAEAGVRDGE 73 (452)
T ss_pred EEEEEeeCCe-e-eeeecCCCCcHHHHHHHHHH--HhCcccccCCCCcceEEecCCCCCCCCCCC-----HHHcCCCCCC
Confidence 4677776543 2 67889999999998877766 3332 12334443 45778888777 9999999999
Q ss_pred EEEEEecCCCCCccccccc
Q 032671 83 SVIAAVKPKPPPRHLRDDT 101 (136)
Q Consensus 83 tIlv~~~p~~~~~~~~~~~ 101 (136)
.+++.....+++..+-||.
T Consensus 74 ~L~L~p~~~~~p~~v~dDv 92 (452)
T TIGR02958 74 LLVLVPASATEPAPVVEDV 92 (452)
T ss_pred eEEEeeCCCCCCCCccccH
Confidence 9966553332222244443
No 102
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=74.41 E-value=10 Score=24.07 Aligned_cols=56 Identities=23% Similarity=0.352 Sum_probs=41.2
Q ss_pred EEEEecCCCcHHHHHHHHHhccCCC--CCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 032671 23 SRLSVSSPIKVRDLRKLIATSSANH--LPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAA 87 (136)
Q Consensus 23 ~~v~v~~~~TV~eLK~~Ia~~~~~g--i~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~ 87 (136)
..+.++...||.+|.+.+.. ... .......+...|+...+ . ..+.-+++||.|.++
T Consensus 14 ~~~~~~~~~tv~~ll~~l~~--~~p~~~~~~~~~v~vN~~~v~~--~-----~~~~~l~~gD~V~i~ 71 (77)
T PF02597_consen 14 EEIEVPEGSTVRDLLEALAE--RYPELALRDRVAVAVNGEIVPD--D-----GLDTPLKDGDEVAIL 71 (77)
T ss_dssp EEEEESSTSBHHHHHHHHCH--HTGGGHTTTTEEEEETTEEEGG--G-----TTTSBEETTEEEEEE
T ss_pred eEEecCCCCcHHHHHHHHHh--hccccccCccEEEEECCEEcCC--c-----cCCcCcCCCCEEEEE
Confidence 45788889999999999976 431 12377888899999875 2 345578999999443
No 103
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=73.05 E-value=17 Score=25.10 Aligned_cols=46 Identities=13% Similarity=0.196 Sum_probs=32.2
Q ss_pred EEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCe
Q 032671 12 ITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGK 60 (136)
Q Consensus 12 I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK 60 (136)
|+||..-+...+.+.++++.+..+|.++|.. ++++. ...++=|+--
T Consensus 3 ikVKv~~~~Dv~~i~v~~~i~f~dL~~kIrd--kf~~~-~~~~iKykDE 48 (86)
T cd06408 3 IRVKVHAQDDTRYIMIGPDTGFADFEDKIRD--KFGFK-RRLKIKMKDD 48 (86)
T ss_pred EEEEEEecCcEEEEEcCCCCCHHHHHHHHHH--HhCCC-CceEEEEEcC
Confidence 4444432223367899999999999999999 99884 4555555543
No 104
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=72.97 E-value=11 Score=28.08 Aligned_cols=47 Identities=13% Similarity=0.168 Sum_probs=37.7
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCc-eEEEe
Q 032671 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIEN-LRLVF 57 (136)
Q Consensus 8 ~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~-QRLI~ 57 (136)
..+.|.|...+|.. ..+.+++.+|+.++-+.++. +.|+.... .-|.+
T Consensus 2 ~~~~~~V~l~dg~~-~~~~~~~~~t~~ev~~~v~~--~~~l~~~~~F~L~~ 49 (207)
T smart00295 2 KPRVLKVYLLDGTT-LEFEVDSSTTAEELLETVCR--KLGIRESEYFGLQF 49 (207)
T ss_pred CcEEEEEEecCCCE-EEEEECCCCCHHHHHHHHHH--HhCCCccceeEEEE
Confidence 46788899999876 78999999999999999999 99985422 44443
No 105
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=72.85 E-value=24 Score=23.26 Aligned_cols=54 Identities=20% Similarity=0.211 Sum_probs=34.7
Q ss_pred EEEEecCCCcHHHHHHHHHhccCCC-----CCC------CceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 032671 23 SRLSVSSPIKVRDLRKLIATSSANH-----LPI------ENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAA 87 (136)
Q Consensus 23 ~~v~v~~~~TV~eLK~~Ia~~~~~g-----i~~------~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~ 87 (136)
..++++ .+||.+|.+.+.+ ... +-. ....+..+|+....+. ..-|++||.|.++
T Consensus 18 ~~v~~~-~~tv~~l~~~l~~--~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~--------~~~l~dgdev~i~ 82 (88)
T TIGR01687 18 EEIEIE-GKTVGDLLNELMA--RYPKEFSELFKEGLGLVPNVIILVNGRNVDWGL--------GTELKDGDVVAIF 82 (88)
T ss_pred EEEEeC-CCCHHHHHHHHHH--HCcHHHHHhCccCCcccccEEEEECCEecCccC--------CCCCCCCCEEEEe
Confidence 556776 8899999999987 442 101 2255566777665321 1468999999543
No 106
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=72.28 E-value=9.7 Score=26.07 Aligned_cols=35 Identities=11% Similarity=0.091 Sum_probs=26.1
Q ss_pred EEEeCCCCCcEEEEecC--CCcHHHHHHHHHhccCCCCC
Q 032671 13 TVKTIGPAPPSRLSVSS--PIKVRDLRKLIATSSANHLP 49 (136)
Q Consensus 13 ~VKt~~~~~~~~v~v~~--~~TV~eLK~~Ia~~~~~gi~ 49 (136)
+||..-+.....+.+++ .+|..+|++.|+. .++++
T Consensus 2 ~vKaty~~d~~rf~~~~~~~~~~~~L~~ev~~--rf~l~ 38 (81)
T cd06396 2 NLKVTYNGESQSFLVSDSENTTWASVEAMVKV--SFGLN 38 (81)
T ss_pred EEEEEECCeEEEEEecCCCCCCHHHHHHHHHH--HhCCC
Confidence 34433233336788888 7799999999999 99988
No 107
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=71.74 E-value=7.3 Score=26.56 Aligned_cols=36 Identities=22% Similarity=0.261 Sum_probs=31.9
Q ss_pred EEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCe
Q 032671 23 SRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGK 60 (136)
Q Consensus 23 ~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK 60 (136)
+.+.+++..+..+|.++|++ +...+++.-+|-|+-.
T Consensus 9 Vai~v~~g~~y~~L~~~ls~--kL~l~~~~~~LSY~~~ 44 (78)
T cd06411 9 VALRAPRGADVSSLRALLSQ--ALPQQAQRGQLSYRAP 44 (78)
T ss_pred EEEEccCCCCHHHHHHHHHH--HhcCChhhcEEEecCC
Confidence 45788899999999999999 9999999999998743
No 108
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=71.59 E-value=15 Score=33.35 Aligned_cols=80 Identities=14% Similarity=0.299 Sum_probs=47.9
Q ss_pred CceEEEEEeCCC-CCcEEEEecCCCcHHHHHHHHHhccCCCCC------CCceEEEec----Ce-ecCCCCCCC----C-
Q 032671 8 ESVEITVKTIGP-APPSRLSVSSPIKVRDLRKLIATSSANHLP------IENLRLVFR----GK-VLDDTQDDD----D- 70 (136)
Q Consensus 8 ~~m~I~VKt~~~-~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~------~~~QRLI~~----GK-~L~D~~t~d----~- 70 (136)
.+++|.|-..++ ...+.+.|-.-.||.++|++|-.+.-.+.| ++..-|.++ |+ .|.|....- .
T Consensus 188 ~~ltl~v~~~~~~~~~i~VkVLdCDTItQVKeKiLDavyk~~p~S~rp~~~d~dLEwr~~~~~~~iL~D~D~ts~~~~~w 267 (539)
T PF08337_consen 188 KTLTLNVVPQEEGSEEIPVKVLDCDTITQVKEKILDAVYKNTPYSQRPRADDVDLEWRQGRGGRLILQDEDSTSKVEGGW 267 (539)
T ss_dssp -EEEEEEECTTTSSTCEEEEEETTSBHHHHHHHHHHHHTTTS-GGGS--GGGEEEEEEETTSEEEEESSSSTTSEEETTE
T ss_pred EEEEEEEEecCCCCceEEEEEEecCcccHHHHHHHHHHHcCCCCCCCCCccccceeeecCCCCcccccCCCCCcccCCCc
Confidence 567777664432 233678887878999999999875545544 344555443 33 455543200 0
Q ss_pred ---CCccccCCCCCCEE-EEE
Q 032671 71 ---RDDVYLQLSNGDSV-IAA 87 (136)
Q Consensus 71 ---~~L~~~~I~dG~tI-lv~ 87 (136)
-||..|+|.+|++| ++.
T Consensus 268 krLNTL~HY~V~dga~vaLv~ 288 (539)
T PF08337_consen 268 KRLNTLAHYKVPDGATVALVP 288 (539)
T ss_dssp EE--BHHHHT--TTEEEEEEE
T ss_pred eEeccHhhcCCCCCceEEEee
Confidence 46899999999999 443
No 109
>PF08783 DWNN: DWNN domain; InterPro: IPR014891 The ~75-residue DWNN (Domain With No Name) domain is highly conserved through eukaryotic species but is absent in prokaryotes. The DWNN domain is found only at the N terminus of the RBBP6 family of proteins which includes: Mammalian RBBP6, a splicing-associated protein that plays a role in the induction of apoptosis and regulation of the cell cycle. Drosophila melanogaster (Fruit fly) SNAMA (something that sticks like glue), a protein that appears to play a role in apoptosis. All of the identified RBBP6 homologues include the DWNN domain, a CCHC-type zinc finger (see PDOC50158 from PROSITEDOC) and a RING-type zinc finger (see PDOC00449 from PROSITEDOC). The three domain form is found in plants, protozoa, fungi and microsporidia. The RBBP6 homologues in vertebrates, insects and worms are longer and include additional domains. In addition to forming part of the full-length RBBP6 protein, the DWNN domain is also expressed in vertebrates as a small protein containing a DWNN domain and a short C-terminal tail (RBBP6 variant 3). The DWNN domain adopts a fold similar to the ubiquitin one, characterised by two alpha-helices and four beta-sheets ordered as beta-beta-alpha-beta-alpha-beta along the sequence. The similarity of DWNN domain to ubiquitin and the presence of the RING finger suggest that the DWNN domain may act as an ubiquitin-like modifier, possibly playing a role in the regulation of the splicing machinery [, ]. ; GO: 0008270 zinc ion binding, 0005634 nucleus; PDB: 2C7H_A.
Probab=71.22 E-value=9.6 Score=25.60 Aligned_cols=39 Identities=15% Similarity=0.105 Sum_probs=23.3
Q ss_pred EEEeCCCCCcEEEEecC-CCcHHHHHHHHHhccCCCCCCC
Q 032671 13 TVKTIGPAPPSRLSVSS-PIKVRDLRKLIATSSANHLPIE 51 (136)
Q Consensus 13 ~VKt~~~~~~~~v~v~~-~~TV~eLK~~Ia~~~~~gi~~~ 51 (136)
.-|..+.+....|.++. ..+|.+||..|.+..+.|-..+
T Consensus 2 ~YKFkS~k~~~~i~fdG~~Isv~dLKr~I~~~~~lg~~~d 41 (74)
T PF08783_consen 2 HYKFKSQKDYDTITFDGTSISVFDLKREIIEKKKLGKGTD 41 (74)
T ss_dssp EEEETT-SSEEEEEESSSEEEHHHHHHHHHHHHT---TTT
T ss_pred eEEecccCCccEEEECCCeeEHHHHHHHHHHHhCCCcCCc
Confidence 34544454435678886 4899999999988334443334
No 110
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=70.72 E-value=24 Score=22.36 Aligned_cols=51 Identities=12% Similarity=0.181 Sum_probs=36.5
Q ss_pred EEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EE
Q 032671 24 RLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IA 86 (136)
Q Consensus 24 ~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI-lv 86 (136)
..+++...|+.+|-+.+ +++.....+-..|..+..+. ..+.-|++||.| ++
T Consensus 9 ~~~~~~~~tl~~ll~~l------~~~~~~vaVavN~~iv~r~~------w~~~~L~~gD~Ieii 60 (66)
T PRK08053 9 PMQCAAGQTVHELLEQL------NQLQPGAALAINQQIIPREQ------WAQHIVQDGDQILLF 60 (66)
T ss_pred EEEcCCCCCHHHHHHHc------CCCCCcEEEEECCEEeChHH------cCccccCCCCEEEEE
Confidence 46777888999887543 44556678889999986321 455579999999 54
No 111
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=68.20 E-value=27 Score=21.93 Aligned_cols=49 Identities=16% Similarity=0.208 Sum_probs=33.9
Q ss_pred EEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EE
Q 032671 25 LSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IA 86 (136)
Q Consensus 25 v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI-lv 86 (136)
++++ ..|+.+|.+.+ ++++....+-..|..+..+ . ..+.-+++||.| ++
T Consensus 10 ~~~~-~~tl~~Ll~~l------~~~~~~vavavN~~iv~~~-~-----~~~~~L~dgD~Ieiv 59 (65)
T PRK06488 10 LQTE-ATTLALLLAEL------DYEGNWLATAVNGELVHKE-A-----RAQFVLHEGDRIEIL 59 (65)
T ss_pred EEcC-cCcHHHHHHHc------CCCCCeEEEEECCEEcCHH-H-----cCccccCCCCEEEEE
Confidence 3443 46888887543 4566667788999998632 2 456689999999 55
No 112
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=67.58 E-value=15 Score=25.40 Aligned_cols=35 Identities=17% Similarity=0.334 Sum_probs=27.6
Q ss_pred EEEEecC-----CCcHHHHHHHHHhccCCCCCC-CceEEEecC
Q 032671 23 SRLSVSS-----PIKVRDLRKLIATSSANHLPI-ENLRLVFRG 59 (136)
Q Consensus 23 ~~v~v~~-----~~TV~eLK~~Ia~~~~~gi~~-~~QRLI~~G 59 (136)
+.+.++. +.+..+|+++|++ .+++++ ....|-|.-
T Consensus 12 rRf~l~~~~~~~d~~~~~L~~kI~~--~f~l~~~~~~~l~Y~D 52 (91)
T cd06398 12 RRFTFPVAENQLDLNMDGLREKVEE--LFSLSPDADLSLTYTD 52 (91)
T ss_pred EEEEeccccccCCCCHHHHHHHHHH--HhCCCCCCcEEEEEEC
Confidence 5566664 7999999999999 999987 556666763
No 113
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=66.23 E-value=26 Score=32.88 Aligned_cols=50 Identities=16% Similarity=0.240 Sum_probs=41.2
Q ss_pred EEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeec
Q 032671 11 EITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVL 62 (136)
Q Consensus 11 ~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L 62 (136)
.|.|-.......+.+.++++.|+..|++.|+. .+|+|.+.|-|+|.|...
T Consensus 315 vvhiFs~~~~~~~~~~~~~~ntl~~~~~~I~~--~Tgipe~~qeLL~e~~~~ 364 (732)
T KOG4250|consen 315 VVHIFSMVQATSHEYYVHADNTLHSLIERISK--QTGIPEGKQELLFEGGLS 364 (732)
T ss_pred eeEEEeeccceEEEEecChhhhHHHHHHHHHH--hhCCCCccceeeeecCcc
Confidence 34455555555577899999999999999998 999999999999997764
No 114
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=65.10 E-value=33 Score=23.21 Aligned_cols=50 Identities=22% Similarity=0.335 Sum_probs=37.9
Q ss_pred EEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEe-cCeecCCCCCCCCCCccccCCCCCCEEEEEe
Q 032671 23 SRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVF-RGKVLDDTQDDDDRDDVYLQLSNGDSVIAAV 88 (136)
Q Consensus 23 ~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~-~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~~ 88 (136)
+...++..+||+++ |. ..|+|.....+|+ +|+.-. + +|-+++|+.|-|..
T Consensus 25 ~~~~~~~~~tvkd~---IE---sLGVP~tEV~~i~vNG~~v~---------~-~~~~~~Gd~v~V~P 75 (81)
T PF14451_consen 25 FTHPFDGGATVKDV---IE---SLGVPHTEVGLILVNGRPVD---------F-DYRLKDGDRVAVYP 75 (81)
T ss_pred eEEecCCCCcHHHH---HH---HcCCChHHeEEEEECCEECC---------C-cccCCCCCEEEEEe
Confidence 55678888999887 43 5899999988875 677764 2 46799999995543
No 115
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=64.22 E-value=32 Score=21.34 Aligned_cols=50 Identities=20% Similarity=0.262 Sum_probs=33.9
Q ss_pred EEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EE
Q 032671 24 RLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IA 86 (136)
Q Consensus 24 ~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI-lv 86 (136)
.++++...|+.+|-+.+. ++ ....+.+.|....... ..+.-+++||.| ++
T Consensus 9 ~~~~~~~~tl~~ll~~l~------~~-~~~~v~vN~~~v~~~~------~~~~~L~~gD~vei~ 59 (65)
T PRK06944 9 TLSLPDGATVADALAAYG------AR-PPFAVAVNGDFVARTQ------HAARALAAGDRLDLV 59 (65)
T ss_pred EEECCCCCcHHHHHHhhC------CC-CCeEEEECCEEcCchh------cccccCCCCCEEEEE
Confidence 467788889999876552 22 3456778888875321 334469999999 54
No 116
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=64.07 E-value=2.2 Score=38.06 Aligned_cols=73 Identities=18% Similarity=0.161 Sum_probs=56.6
Q ss_pred eEEEEEeCCCCCc--E-EEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032671 10 VEITVKTIGPAPP--S-RLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA 86 (136)
Q Consensus 10 m~I~VKt~~~~~~--~-~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv 86 (136)
-++.|+.....+. . .+..+-+.|-.+|...|++ +.|++-+-.|.|..||+|.-.+| |.+-|++.+..++|
T Consensus 36 at~~Vrlv~~~k~~~m~l~k~sL~i~Gselqa~iak--klgi~enhvKci~~~Kils~~kt-----laeQglk~nq~~mv 108 (568)
T KOG2561|consen 36 ATESVRLVFAGKGDRMNLKKCSLHITGSELQALIAK--KLGIKENHVKCIINGKILSCRKT-----LAEQGLKINQELMV 108 (568)
T ss_pred cceeeEeccccccchhhhhhcccccccHHHHHHHHH--HcCCchhhhheeeccceeecccc-----hhhhhhhhhhHHHH
Confidence 4455554433331 1 2456667889999999999 99999999999999999988888 99999999988855
Q ss_pred Eec
Q 032671 87 AVK 89 (136)
Q Consensus 87 ~~~ 89 (136)
.+.
T Consensus 109 ~~~ 111 (568)
T KOG2561|consen 109 AVG 111 (568)
T ss_pred Hhc
Confidence 443
No 117
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=64.00 E-value=18 Score=25.21 Aligned_cols=68 Identities=10% Similarity=0.139 Sum_probs=42.3
Q ss_pred EEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-E-EEecCCCCCcccc
Q 032671 24 RLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-I-AAVKPKPPPRHLR 98 (136)
Q Consensus 24 ~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI-l-v~~~p~~~~~~~~ 98 (136)
...++-...+..||..+.. +.++.-+.-.+.+....|..+++ |.+-+++-...| + +-+++....+.+.
T Consensus 6 ~q~mDI~epl~~Lk~lLe~--Rl~~~L~~~~f~LQD~~L~~~k~-----L~dQcVqgeGlVQlnvQi~s~~~~~riN 75 (88)
T PF11620_consen 6 MQHMDIREPLSTLKKLLER--RLGISLSDYEFWLQDIQLEPHKS-----LVDQCVQGEGLVQLNVQIKSNQGEPRIN 75 (88)
T ss_dssp EEEEESSSBGGGHHHHSHH--HH-S--SS-EEEETTEE--TTSB-----TTTSS----SEEEEEEEEE--TT--EEE
T ss_pred EEEEecCCcHHHHHHHHHH--hhCCCcCCCeEEeccceecCCcc-----HHHhhccccCEEEEEEEEEecCCCcceE
Confidence 4567778889999999998 99999999999889888988888 999999988888 3 3334444444444
No 118
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=63.43 E-value=29 Score=29.55 Aligned_cols=52 Identities=13% Similarity=0.161 Sum_probs=39.8
Q ss_pred EEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EEE
Q 032671 24 RLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IAA 87 (136)
Q Consensus 24 ~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI-lv~ 87 (136)
.++++...||.+|-+ ..+++++..-+.++|+.+..+ . ..++-|++||.| ++.
T Consensus 9 ~~el~e~~TL~dLL~------~L~i~~~~VAVeVNgeIVpr~-~-----w~~t~LkeGD~IEII~ 61 (326)
T PRK11840 9 PRQVPAGLTIAALLA------ELGLAPKKVAVERNLEIVPRS-E-----YGQVALEEGDELEIVH 61 (326)
T ss_pred EEecCCCCcHHHHHH------HcCCCCCeEEEEECCEECCHH-H-----cCccccCCCCEEEEEE
Confidence 357777888887743 367889999999999999643 2 567789999999 553
No 119
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=63.10 E-value=8.7 Score=25.44 Aligned_cols=47 Identities=17% Similarity=0.250 Sum_probs=30.9
Q ss_pred EEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032671 25 LSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA 86 (136)
Q Consensus 25 v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv 86 (136)
+-++ .|+.+|....++ ++|+++.+ -+.-.|-.+.|=. =|.|||.|++
T Consensus 22 i~lP--~SleeLl~ia~~--kfg~~~~~-v~~~dgaeIdDI~----------~IRDgD~L~~ 68 (69)
T PF11834_consen 22 IWLP--DSLEELLKIASE--KFGFSATK-VLNEDGAEIDDID----------VIRDGDHLYL 68 (69)
T ss_pred EEcC--ccHHHHHHHHHH--HhCCCceE-EEcCCCCEEeEEE----------EEEcCCEEEE
Confidence 4444 499999998888 99996322 2333455554321 3789999965
No 120
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=62.45 E-value=28 Score=23.02 Aligned_cols=44 Identities=18% Similarity=0.140 Sum_probs=35.8
Q ss_pred EEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecC
Q 032671 13 TVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRG 59 (136)
Q Consensus 13 ~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~G 59 (136)
.|-.++|+. ..+.+.+..|+.|+=+.+-+ +.|+.++.--+.+.|
T Consensus 3 ~V~LPng~~-t~V~vrpg~ti~d~L~~~c~--kr~l~~~~~~v~~~~ 46 (72)
T cd01760 3 RVYLPNGQR-TVVPVRPGMSVRDVLAKACK--KRGLNPECCDVFLLG 46 (72)
T ss_pred EEECcCCCe-EEEEECCCCCHHHHHHHHHH--HcCCCHHHEEEEEec
Confidence 344566755 67999999999999999988 999999997776664
No 121
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=60.14 E-value=30 Score=24.19 Aligned_cols=40 Identities=15% Similarity=0.263 Sum_probs=31.6
Q ss_pred EEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEe
Q 032671 14 VKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVF 57 (136)
Q Consensus 14 VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~ 57 (136)
++..+|.. ..+.|+.+.|..+|+.++++ .++++.. ..|=|
T Consensus 17 l~Y~GG~t-r~i~V~r~~s~~el~~kl~~--~~~~~~~-~~lky 56 (97)
T cd06410 17 LRYVGGET-RIVSVDRSISFKELVSKLSE--LFGAGVV-VTLKY 56 (97)
T ss_pred EEEcCCce-EEEEEcCCCCHHHHHHHHHH--HhCCCCc-eEEEE
Confidence 56667755 77899999999999999998 8888766 44433
No 122
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=57.96 E-value=32 Score=23.75 Aligned_cols=36 Identities=8% Similarity=0.100 Sum_probs=29.7
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHh
Q 032671 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIAT 42 (136)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~ 42 (136)
++.+.|.|...+...++++.++.+.|+.+|-+.+..
T Consensus 14 ~~~i~v~v~~~~~~~~~t~~~~~~~t~~~li~~~l~ 49 (106)
T PF00794_consen 14 NNKIKVSVHFENSQQSFTFQVDPNSTPEELIAQALK 49 (106)
T ss_dssp SSEEEEEEEETTCSEEEEEEEETTS-HHHHHHHHHH
T ss_pred CCeEEEEEEEcCCCcEEEEEECCCCCHHHHHHHHHH
Confidence 567899999987766688999999999999887776
No 123
>COG5100 NPL4 Nuclear pore protein [Nuclear structure]
Probab=56.87 E-value=74 Score=28.47 Aligned_cols=72 Identities=14% Similarity=0.107 Sum_probs=50.2
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEec----Cee--cCCCCCCCCCCccccCCCCCCE
Q 032671 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFR----GKV--LDDTQDDDDRDDVYLQLSNGDS 83 (136)
Q Consensus 10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~----GK~--L~D~~t~d~~~L~~~~I~dG~t 83 (136)
|-+.+|+..|. +.+++.++.+++-|-.+|-.-...++.|++.-+.-+ |-+ +..+++ +.++|++.|+.
T Consensus 1 Mi~rfRsk~G~--~Rve~qe~d~lg~l~~kll~~~~~n~~~e~~svc~~p~~qG~~~s~l~dqt-----~~dlGL~hGqm 73 (571)
T COG5100 1 MIFRFRSKEGQ--RRVEVQESDVLGMLSPKLLAFFEVNYSPEQISVCSAPDGQGEIFSLLKDQT-----PDDLGLRHGQM 73 (571)
T ss_pred CeEEEecCCCc--eeeeccccchhhhhhHHHHhhhccCCCccceEEEeCCCCCceeeecccccC-----hhhhccccCcE
Confidence 44677777775 578999999999888777653344677777666532 221 233444 99999999999
Q ss_pred EEEEe
Q 032671 84 VIAAV 88 (136)
Q Consensus 84 Ilv~~ 88 (136)
+++--
T Consensus 74 Lyl~y 78 (571)
T COG5100 74 LYLEY 78 (571)
T ss_pred EEEEe
Confidence 96643
No 124
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=54.92 E-value=58 Score=21.34 Aligned_cols=50 Identities=22% Similarity=0.255 Sum_probs=28.6
Q ss_pred EEecC-CCcHHHHHHHHHhccCCC-----CCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032671 25 LSVSS-PIKVRDLRKLIATSSANH-----LPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA 86 (136)
Q Consensus 25 v~v~~-~~TV~eLK~~Ia~~~~~g-----i~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv 86 (136)
++++. .+||.+|++.+.+ +.. ......+.-.++.... .+.-|++||.|-+
T Consensus 19 ~~v~~~~~tv~~l~~~L~~--~~~~~~~~~~~~~~~~aVN~~~~~----------~~~~l~dgDeVai 74 (81)
T PRK11130 19 LELAADFPTVEALRQHLAQ--KGDRWALALEDGKLLAAVNQTLVS----------FDHPLTDGDEVAF 74 (81)
T ss_pred EEecCCCCCHHHHHHHHHH--hCccHHhhhcCCCEEEEECCEEcC----------CCCCCCCCCEEEE
Confidence 45544 4799999999987 541 1122233333443321 1235899999943
No 125
>smart00455 RBD Raf-like Ras-binding domain.
Probab=54.04 E-value=49 Score=21.57 Aligned_cols=43 Identities=21% Similarity=0.118 Sum_probs=35.9
Q ss_pred EEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecC
Q 032671 14 VKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRG 59 (136)
Q Consensus 14 VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~G 59 (136)
|-.++++. ..+.+.|..|+.|+=+.+-+ +.|+.++.-.+.+.|
T Consensus 4 v~LP~~~~-~~V~vrpg~tl~e~L~~~~~--kr~l~~~~~~v~~~g 46 (70)
T smart00455 4 VHLPDNQR-TVVKVRPGKTVRDALAKALK--KRGLNPECCVVRLRG 46 (70)
T ss_pred EECCCCCE-EEEEECCCCCHHHHHHHHHH--HcCCCHHHEEEEEcC
Confidence 34456654 77999999999999999988 999999998888866
No 126
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=51.72 E-value=57 Score=25.53 Aligned_cols=43 Identities=28% Similarity=0.293 Sum_probs=24.9
Q ss_pred EEEEecCCCcHHHHHHHHHhccCCCCCCC---ceEE--EecCee---cCCCCC
Q 032671 23 SRLSVSSPIKVRDLRKLIATSSANHLPIE---NLRL--VFRGKV---LDDTQD 67 (136)
Q Consensus 23 ~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~---~QRL--I~~GK~---L~D~~t 67 (136)
+.+-++.+.||.+|-+.++. +.+++.+ ..|| ++.+|. +..+..
T Consensus 36 ~~~~vpk~~tV~Dll~~l~~--k~~~~~~~~~~lrl~ev~~~ki~~~~~~d~~ 86 (213)
T PF14533_consen 36 YELLVPKTGTVSDLLEELQK--KVGFSEEGTGKLRLWEVSNHKIYKILSEDEP 86 (213)
T ss_dssp EEE--BTT-BHHHHHHHHHT--T----TT----EEEEEEETTEEEEEE-TTSB
T ss_pred EEEEECCCCCHHHHHHHHHH--HcCCCcCCcCcEEEEEeECCEEEeecCCCCc
Confidence 45788999999999999998 8888765 3554 467775 444444
No 127
>cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2. DRG1 and DRG2 have a C-terminal TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) with a predominantly beta-sheet structure. The function of TGS is unknown but its presence in two types of regulatory proteins (the DRG GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=51.20 E-value=47 Score=22.06 Aligned_cols=33 Identities=18% Similarity=0.271 Sum_probs=24.0
Q ss_pred eEEEEEeCCCCCc--EEEEecCCCcHHHHHHHHHh
Q 032671 10 VEITVKTIGPAPP--SRLSVSSPIKVRDLRKLIAT 42 (136)
Q Consensus 10 m~I~VKt~~~~~~--~~v~v~~~~TV~eLK~~Ia~ 42 (136)
|+|+-|..+.... -.+.++..+||.++=.+|..
T Consensus 2 irvytk~~g~~~d~~~~liL~~GaTV~D~a~~iH~ 36 (75)
T cd01666 2 IRVYTKPKGQEPDFDEPVILRRGSTVEDVCNKIHK 36 (75)
T ss_pred EEEEeCCCCCCCCCCCCEEECCCCCHHHHHHHHHH
Confidence 5666676655432 24788999999999888875
No 128
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=50.99 E-value=37 Score=27.28 Aligned_cols=46 Identities=24% Similarity=0.294 Sum_probs=33.5
Q ss_pred ceEEEEEeCCCC--CcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEE
Q 032671 9 SVEITVKTIGPA--PPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLV 56 (136)
Q Consensus 9 ~m~I~VKt~~~~--~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI 56 (136)
.+.|.++-.... ..+.+.++..+|-.+|-++|++ ..+++|+..||.
T Consensus 176 rv~V~f~~~~~~~~~~F~l~ls~~~tY~~la~~Va~--~l~~dP~~lr~~ 223 (249)
T PF12436_consen 176 RVEVEFKPKDNPNDPEFTLWLSKKMTYDQLAEKVAE--HLNVDPEHLRFF 223 (249)
T ss_dssp EEEEEEEETTSTT---EEEEEETT--HHHHHHHHHH--HHTS-GGGEEEE
T ss_pred eEEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHH--HHCCChHHEEEE
Confidence 366777753222 3478999999999999999999 999999999985
No 129
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=47.75 E-value=18 Score=23.16 Aligned_cols=41 Identities=17% Similarity=0.224 Sum_probs=31.6
Q ss_pred EEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCC-CCceEEEe
Q 032671 14 VKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLP-IENLRLVF 57 (136)
Q Consensus 14 VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~-~~~QRLI~ 57 (136)
|..+++.. ..+++++++|+.+|=+.|+. ..++. .+-.=|.|
T Consensus 1 V~llD~~~-~~~~v~~~~t~~~l~~~v~~--~l~l~e~~~FgL~~ 42 (80)
T PF09379_consen 1 VRLLDGTT-KTFEVDPKTTGQDLLEQVCD--KLGLKEKEYFGLQY 42 (80)
T ss_dssp EEESSEEE-EEEEEETTSBHHHHHHHHHH--HHTTSSGGGEEEEE
T ss_pred CCCcCCCc-EEEEEcCCCcHHHHHHHHHH--HcCCCCccEEEEEE
Confidence 44566654 77999999999999999998 77765 33377777
No 130
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=46.71 E-value=76 Score=20.63 Aligned_cols=32 Identities=25% Similarity=0.251 Sum_probs=26.5
Q ss_pred EEEEecCCCcHHHHHHHHHhccCCCCC--CCceEEE
Q 032671 23 SRLSVSSPIKVRDLRKLIATSSANHLP--IENLRLV 56 (136)
Q Consensus 23 ~~v~v~~~~TV~eLK~~Ia~~~~~gi~--~~~QRLI 56 (136)
.+|.|+.++|..++=..+.+ ++++. +....|+
T Consensus 15 kti~V~~~~t~~~Vi~~~l~--k~~l~~~~~~y~L~ 48 (87)
T cd01768 15 KTLRVSKDTTAQDVIQQLLK--KFGLDDDPEDYALV 48 (87)
T ss_pred EEEEECCCCCHHHHHHHHHH--HhCCcCCcccEEEE
Confidence 57999999999999999988 88887 5555554
No 131
>PF02192 PI3K_p85B: PI3-kinase family, p85-binding domain; InterPro: IPR003113 This is the region of the p110 phosphatidylinositol 3-kinase (PI3-Kinase) that binds the p85 subunit.; GO: 0046934 phosphatidylinositol-4,5-bisphosphate 3-kinase activity, 0007165 signal transduction, 0005942 phosphatidylinositol 3-kinase complex; PDB: 3HIZ_A 3HHM_A 2RD0_A 4A55_A 2Y3A_A 2V1Y_A.
Probab=46.27 E-value=20 Score=24.27 Aligned_cols=20 Identities=15% Similarity=0.209 Sum_probs=16.9
Q ss_pred EEEEecCCCcHHHHHHHHHh
Q 032671 23 SRLSVSSPIKVRDLRKLIAT 42 (136)
Q Consensus 23 ~~v~v~~~~TV~eLK~~Ia~ 42 (136)
+.++++.++|+.++|+.+.+
T Consensus 2 i~l~~~~~~Tl~~iK~~lw~ 21 (78)
T PF02192_consen 2 IPLRVSRDATLSEIKEELWE 21 (78)
T ss_dssp EEEEEETT-BHHHHHHHHHH
T ss_pred eEEEccCcCcHHHHHHHHHH
Confidence 46889999999999998886
No 132
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=45.71 E-value=62 Score=22.68 Aligned_cols=36 Identities=14% Similarity=0.063 Sum_probs=29.4
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHh
Q 032671 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIAT 42 (136)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~ 42 (136)
++.+.|.|...+....+++.++++.|+.+|-+.+-.
T Consensus 15 ~~~i~v~i~~~~~~~~~t~~v~~~~~p~~li~~~l~ 50 (108)
T smart00144 15 ANKILIVVHLEKDQQTKTLKVNPNCTPDSVLAQAFT 50 (108)
T ss_pred CCeEEEEEEEccCceeEEEEECCCCCHHHHHHHHHH
Confidence 467888888877666688999999999999887765
No 133
>PF03671 Ufm1: Ubiquitin fold modifier 1 protein; InterPro: IPR005375 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin-like molecules (UBLs) can be divided into two subclasses: type-1 UBLs, which ligate to target proteins in a manner similar, but not identical, to the ubiquitylation pathway, such as SUMO, NEDD8, and UCRP/ISG15, and type-2 UBLs (also called UDPs, ubiquitin-domain proteins), which contain ubiquitin-like structure embedded in a variety of different classes of large proteins with apparently distinct functions, such as Rad23, Elongin B, Scythe, Parkin, and HOIL-1. This entry represents Ufm1 (ubiquitin-fold modifier), which is a ubiquitin-like protein with structural similarities to ubiquitin [, ]. Ufm1 is one of a number of ubiquitin-like modifiers that conjugate to target proteins in cells through Uba5 (E1) and Ufc1 (E2). The Ufm1-system is conserved in metazoa and plants, suggesting it has a potential role in multicellular organisms []. Human Ufm1 is synthesized as a precursor consisting of 85 amino-acid residues. Prior to activation by Uba5, the extra amino acids at the C-terminal region of Ufm1 are removed to expose Gly, which is necessary for conjugation to target molecule(s). C-terminal processing of Ufm1 requires two specific cysteine peptidases (IPR012462 from INTERPRO): UfSP1 and UfSP2; both peptidases are also able to release Ufm1 from Ufm1-conjugated cellular proteins. UfSP2 is present in most, if not all, of multi-cellular organisms including plant, nematode, fly, and mammal, whereas UfSP1 is not present in plants and nematodes []. For further information on ubiquitin, please see Protein of the Month [].; PDB: 1J0G_A 1WXS_A 1L7Y_A.
Probab=44.77 E-value=97 Score=20.99 Aligned_cols=62 Identities=19% Similarity=0.273 Sum_probs=40.6
Q ss_pred eCCCCCcEE-EEecCCCcHHHHHHHHHhccCCCCCCCceEEEec-CeecCCCCCCCCCCccccCCCCCCEE
Q 032671 16 TIGPAPPSR-LSVSSPIKVRDLRKLIATSSANHLPIENLRLVFR-GKVLDDTQDDDDRDDVYLQLSNGDSV 84 (136)
Q Consensus 16 t~~~~~~~~-v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~-GK~L~D~~t~d~~~L~~~~I~dG~tI 84 (136)
+...+.++. +.|+.++....+-.-.++ ++.+|+..--+|-. |--+.-.++ -.+.-++-|+.|
T Consensus 10 tsDp~~p~kv~sVPE~apftaVlkfaAe--eF~vp~~tsaiItndG~GInP~QT-----ag~vflKhGseL 73 (76)
T PF03671_consen 10 TSDPKLPYKVISVPEEAPFTAVLKFAAE--EFKVPPATSAIITNDGVGINPQQT-----AGNVFLKHGSEL 73 (76)
T ss_dssp STSSTS-EEEEEEETTSBHHHHHHHHHH--HTTS-SSSEEEEESSS-EE-TTSB-----HHHHHHHT-SEE
T ss_pred ccCCCCcceEEecCCCCchHHHHHHHHH--HcCCCCceEEEEecCCcccccchh-----hhhhHhhcCcEe
Confidence 445555554 799999877777666777 89999988777765 555666666 666667777776
No 134
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=44.76 E-value=1.1e+02 Score=21.72 Aligned_cols=45 Identities=24% Similarity=0.184 Sum_probs=31.6
Q ss_pred EEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCC-CceEE-EecC
Q 032671 12 ITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPI-ENLRL-VFRG 59 (136)
Q Consensus 12 I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~-~~QRL-I~~G 59 (136)
|.|--.++.. .++.++.++||.|+=.+++. ++.++. ..-+| +..|
T Consensus 5 IRIFr~D~Tf-~Tls~~l~tTv~eli~~L~r--K~~l~~~~ny~l~l~~~ 51 (97)
T cd01775 5 IRVFRSDGTF-TTLSCPLNTTVSELIPQLAK--KFYLPSGGNYQLSLKKH 51 (97)
T ss_pred EEEEecCCcE-EEEEcCCcCcHHHHHHHHHH--hhcCCCCCCeEEEEEEC
Confidence 3444445544 57899999999999999988 887776 33444 3444
No 135
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=44.03 E-value=86 Score=20.17 Aligned_cols=46 Identities=17% Similarity=0.164 Sum_probs=31.6
Q ss_pred ceEEEEEeCCCCC-cEEEEecCCCcHHHHHHHHHhccCCCC--CCCceEEE
Q 032671 9 SVEITVKTIGPAP-PSRLSVSSPIKVRDLRKLIATSSANHL--PIENLRLV 56 (136)
Q Consensus 9 ~m~I~VKt~~~~~-~~~v~v~~~~TV~eLK~~Ia~~~~~gi--~~~~QRLI 56 (136)
.++|+.-...... ..+|.|+..+|+.++=+.+.+ ++++ .+....|.
T Consensus 4 ~lrVy~~~~~~~~~~k~i~v~~~tTa~evi~~~l~--k~~l~~~~~~y~L~ 52 (93)
T PF00788_consen 4 VLRVYDGDGSPGSTYKTIKVSSSTTAREVIEMALE--KFGLAEDPSDYCLV 52 (93)
T ss_dssp EEEEEETTSSSCCSEEEEEEETTSBHHHHHHHHHH--HTTTSSSGGGEEEE
T ss_pred EEEEEcCCCCCCccEEEEEECCCCCHHHHHHHHHH--HhCCCCCCCCEEEE
Confidence 3444444433222 256999999999999999988 8998 34556663
No 136
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=43.80 E-value=71 Score=22.06 Aligned_cols=39 Identities=23% Similarity=0.323 Sum_probs=31.1
Q ss_pred EEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCc
Q 032671 11 EITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIEN 52 (136)
Q Consensus 11 ~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~ 52 (136)
-|+|-...+.. -.+.|+..+|++++=+.++. +.++..+.
T Consensus 4 vvkv~~~Dg~s-K~l~V~~~~Ta~dV~~~L~~--K~h~~~~~ 42 (85)
T cd01787 4 VVKVYSEDGAS-KSLEVDERMTARDVCQLLVD--KNHCQDDS 42 (85)
T ss_pred EEEEEecCCCe-eEEEEcCCCcHHHHHHHHHH--HhCCCCCC
Confidence 35666677755 78999999999999999988 88876655
No 137
>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]
Probab=42.48 E-value=52 Score=30.03 Aligned_cols=62 Identities=19% Similarity=0.195 Sum_probs=37.8
Q ss_pred EEEEecCC-CcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCC--CCCCccccCCCCCCEEEEE
Q 032671 23 SRLSVSSP-IKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDD--DDRDDVYLQLSNGDSVIAA 87 (136)
Q Consensus 23 ~~v~v~~~-~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~--d~~~L~~~~I~dG~tIlv~ 87 (136)
..+.++.. .|+..|-..|-. .+.++.|+ ..|.+ -+.+.|.... .+++|+++||.+|+.|.+.
T Consensus 445 ~~l~ln~~~~~~~~L~D~ivk-~r~~~~pd-vsll~-~~Li~~~d~e~n~~k~lsel~i~ngsli~~~ 509 (603)
T KOG2013|consen 445 LVLELNTRKSTLRDLVDKIVK-TRLGYLPD-VSLLD-DDLIDDMDFEDNLDKTLSELGILNGSLINVK 509 (603)
T ss_pred eEEEeccccchHHHHHHHHHH-HHhccCcc-cchhh-hhhcccccchhhhhhhHHhhCCCCCceEeee
Confidence 34566653 789999877765 35666553 33333 2333222222 2388999999999977554
No 138
>cd01776 Rin1_RA Ubiquitin domain of RIN1 RAS effector. Rin1_RA RIN1 is a RAS effector that binds with specificity and high affinity to activated RAS via its carboxy-terminal RA (RAS-associated) domain. RIN1 competes directly with RAF1 for RAS binding and is thought to divert signaling away from RAF and the MAPK pathway while also shunting RAS signals through alternate pathways. In addition, Rin1 and Rin2 are Rab5-binding proteins, binding preferentially to the GTP-bound form, that enhance the GDP-GTP exchange reaction on Rab5 that regulate the docking and fusion processes of endocytic vesicles. In addition to the RA domain, RIN1 and RIN2 have an SH2 (Src homology 2) domain, a proline-rich SH3 domain, and a Vps9 domain.
Probab=40.14 E-value=1e+02 Score=21.38 Aligned_cols=32 Identities=25% Similarity=0.237 Sum_probs=27.7
Q ss_pred EEEEecCCCcHHHHHHHHHhccCCCCC-CCceEEE
Q 032671 23 SRLSVSSPIKVRDLRKLIATSSANHLP-IENLRLV 56 (136)
Q Consensus 23 ~~v~v~~~~TV~eLK~~Ia~~~~~gi~-~~~QRLI 56 (136)
-++-|.|.+|+.+|=..+|+ ++.+. |+...|+
T Consensus 16 KTL~V~P~~tt~~vc~lcA~--Kf~V~qPe~y~LF 48 (87)
T cd01776 16 KTLLVRPYITTEDVCQLCAE--KFKVTQPEEYSLF 48 (87)
T ss_pred eeeecCCCCcHHHHHHHHHH--HhccCChhheeEE
Confidence 36899999999999999999 99886 7777775
No 139
>PF07929 PRiA4_ORF3: Plasmid pRiA4b ORF-3-like protein; InterPro: IPR012912 Members of this family are similar to the protein product of ORF-3 (Q44206 from SWISSPROT) found on plasmid pRiA4 in the bacterium Agrobacterium rhizogenes. This plasmid is responsible for tumourigenesis at wound sites of plants infected by this bacterium, but the ORF-3 product does not seem to be involved in the pathogenetic process []. Other proteins found in this family are annotated as being putative TnpR resolvases (Q9LCU7 from SWISSPROT, Q50439 from SWISSPROT), but no further evidence was found to back this. Moreover, another member of this family is described as a probable lexA repressor (Q7UEI4 from SWISSPROT) and in fact carries a LexA DNA binding domain (IPR006199 from INTERPRO), but no references were found to expand on this. ; PDB: 2I1S_A.
Probab=39.04 E-value=71 Score=23.96 Aligned_cols=42 Identities=26% Similarity=0.435 Sum_probs=26.4
Q ss_pred ceEEEEEeCCCCCc--EEEEecCCCcHHHHHHHHHhccCCCCCCCc
Q 032671 9 SVEITVKTIGPAPP--SRLSVSSPIKVRDLRKLIATSSANHLPIEN 52 (136)
Q Consensus 9 ~m~I~VKt~~~~~~--~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~ 52 (136)
..+|+|+-.+.+.+ ..|.|+.+.|+.+|=..|.. .++..-.-
T Consensus 4 ~y~lkV~L~~~~p~iwRri~Vp~~~tl~~Lh~~Iq~--afgw~~~H 47 (179)
T PF07929_consen 4 VYQLKVSLKGSKPPIWRRIEVPADITLADLHEVIQA--AFGWDDDH 47 (179)
T ss_dssp EEEEEEEETT-SS-EEEEEEEETT-BHHHHHHHHHH--HTT----S
T ss_pred EEEEEEEEcCCCCCeEEEEEECCCCCHHHHHHHHHH--HhCcCCCE
Confidence 34566665544333 35899999999999999988 88876554
No 140
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=38.96 E-value=83 Score=21.66 Aligned_cols=44 Identities=11% Similarity=0.186 Sum_probs=33.0
Q ss_pred EEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEec
Q 032671 11 EITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFR 58 (136)
Q Consensus 11 ~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~ 58 (136)
+.+|+..+.. ..+..+..-|...|+++|.. .+++|+...-+-|-
T Consensus 2 ~fKv~~~g~~--RRf~~~~~pt~~~L~~kl~~--Lf~lp~~~~~vtYi 45 (82)
T cd06397 2 QFKSSFLGDT--RRIVFPDIPTWEALASKLEN--LYNLPEIKVGVTYI 45 (82)
T ss_pred eEEEEeCCce--EEEecCCCccHHHHHHHHHH--HhCCChhHeEEEEE
Confidence 4556655553 46777888899999999998 99999877666553
No 141
>smart00143 PI3K_p85B PI3-kinase family, p85-binding domain. Region of p110 PI3K that binds the p85 subunit.
Probab=38.03 E-value=30 Score=23.52 Aligned_cols=20 Identities=10% Similarity=0.135 Sum_probs=17.9
Q ss_pred EEEEecCCCcHHHHHHHHHh
Q 032671 23 SRLSVSSPIKVRDLRKLIAT 42 (136)
Q Consensus 23 ~~v~v~~~~TV~eLK~~Ia~ 42 (136)
+.++++.++|+.++|+.+.+
T Consensus 2 i~l~v~~~aTl~~IK~~lw~ 21 (78)
T smart00143 2 VTLRVLREATLSTIKHELFK 21 (78)
T ss_pred eeEEccccccHHHHHHHHHH
Confidence 46789999999999999987
No 142
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=37.93 E-value=57 Score=20.34 Aligned_cols=56 Identities=23% Similarity=0.232 Sum_probs=33.8
Q ss_pred EEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE
Q 032671 12 ITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV 84 (136)
Q Consensus 12 I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI 84 (136)
|+|.++.|+ ..+++..+|+.++=..|...... .-.--...|+... -++-|++|++|
T Consensus 1 I~v~lpdG~---~~~~~~g~T~~d~A~~I~~~l~~----~~~~A~Vng~~vd----------l~~~L~~~d~v 56 (60)
T PF02824_consen 1 IRVYLPDGS---IKELPEGSTVLDVAYSIHSSLAK----RAVAAKVNGQLVD----------LDHPLEDGDVV 56 (60)
T ss_dssp EEEEETTSC---EEEEETTBBHHHHHHHHSHHHHH----CEEEEEETTEEEE----------TTSBB-SSEEE
T ss_pred CEEECCCCC---eeeCCCCCCHHHHHHHHCHHHHh----heeEEEEcCEECC----------CCCCcCCCCEE
Confidence 456666664 46799999999998888751111 1112234554442 34468888888
No 143
>PF07001 BAT2_N: BAT2 N-terminus; InterPro: IPR009738 This entry represents the N terminus (approximately 200 residues) of the proline-rich protein BAT2. BAT2 is similar to other proteins with large proline-rich domains, such as some nuclear proteins, collagens, elastin, and synapsin [].
Probab=36.46 E-value=30 Score=27.24 Aligned_cols=62 Identities=19% Similarity=0.337 Sum_probs=36.2
Q ss_pred EecCeecCCCCCCCCCCccccCCCCCCEE-EEEecCCCCCcccccccCCCCcccccccccCCCChHHH
Q 032671 56 VFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IAAVKPKPPPRHLRDDTCIDDDDLDLKFKLPQSTSRWK 122 (136)
Q Consensus 56 I~~GK~L~D~~t~d~~~L~~~~I~dG~tI-lv~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 122 (136)
+|+|+.++..+. ..-.-.|++.=.+| .+...| ||++.=..-.|..+-|-+..+ +|.++.-|-
T Consensus 26 ~YkGks~e~qk~---~~~~~hGmqsLGKv~~aRRmP-pPaNLPSLKaEn~GnDpnv~l-VP~~GsGWa 88 (189)
T PF07001_consen 26 LYKGKSLEPQKS---TVPRRHGMQSLGKVPSARRMP-PPANLPSLKAENKGNDPNVSL-VPKGGSGWA 88 (189)
T ss_pred hhcCCccccccC---CccCCCcceecccccccccCC-CCCCCcchhhhccCCCCCcee-ecCCCcCcc
Confidence 589999985443 33344455543343 222222 333333344567788888888 999888884
No 144
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=36.42 E-value=1.2e+02 Score=19.88 Aligned_cols=32 Identities=34% Similarity=0.346 Sum_probs=26.2
Q ss_pred EEEEecCCCcHHHHHHHHHhccCCCCCC--CceEEE
Q 032671 23 SRLSVSSPIKVRDLRKLIATSSANHLPI--ENLRLV 56 (136)
Q Consensus 23 ~~v~v~~~~TV~eLK~~Ia~~~~~gi~~--~~QRLI 56 (136)
.+|.|+.++|..++=..+.+ +++++. +...|+
T Consensus 18 kti~v~~~tTa~~Vi~~~l~--k~~l~~~~~~y~L~ 51 (90)
T smart00314 18 KTLRVSSRTTARDVIQQLLE--KFHLTDDPEEYVLV 51 (90)
T ss_pred EEEEECCCCCHHHHHHHHHH--HhCCCCCcccEEEE
Confidence 57999999999999999988 888874 455554
No 145
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=36.35 E-value=38 Score=24.85 Aligned_cols=35 Identities=9% Similarity=0.036 Sum_probs=28.1
Q ss_pred EecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecC
Q 032671 26 SVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLD 63 (136)
Q Consensus 26 ~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~ 63 (136)
-|+.+.||++|...|.. +.+++++.. .+|-+..+.
T Consensus 46 lVP~d~tV~qF~~iIRk--rl~l~~~k~-flfVnn~lp 80 (121)
T PTZ00380 46 ALPRDATVAELEAAVRQ--ALGTSAKKV-TLAIEGSTP 80 (121)
T ss_pred EcCCCCcHHHHHHHHHH--HcCCChhHE-EEEECCccC
Confidence 69999999999999988 889999984 555555443
No 146
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=35.61 E-value=80 Score=28.28 Aligned_cols=82 Identities=12% Similarity=0.202 Sum_probs=61.8
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEE--EecCeecCCCCCCCCCCccccCCCCCCEEE
Q 032671 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRL--VFRGKVLDDTQDDDDRDDVYLQLSNGDSVI 85 (136)
Q Consensus 8 ~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRL--I~~GK~L~D~~t~d~~~L~~~~I~dG~tIl 85 (136)
....|.|+.++|.. +.-..+.+.-+..++.-+.. ..++.....-| .|--|..-+++. +++|.++.|-+...|+
T Consensus 313 d~~rLqiRLPdGss-fte~Fps~~vL~~vr~yvrq--~~~i~~g~f~LatpyPRReft~eDy--~KtllEl~L~psaalv 387 (506)
T KOG2507|consen 313 DDVRLQIRLPDGSS-FTEKFPSTSVLRMVRDYVRQ--NQTIGLGAFDLATPYPRREFTDEDY--DKTLLELRLFPSAALV 387 (506)
T ss_pred ceeEEEEecCCccc-hhhcCCcchHHHHHHHHHHh--cccccccceeeccccccccccchhh--hhhHHHhccCCcceEE
Confidence 34789999999976 77678888888899988877 66666666555 576777655433 4789999999999888
Q ss_pred EEecCCCCC
Q 032671 86 AAVKPKPPP 94 (136)
Q Consensus 86 v~~~p~~~~ 94 (136)
|+.+..+..
T Consensus 388 vlpk~r~t~ 396 (506)
T KOG2507|consen 388 VLPKKRATV 396 (506)
T ss_pred EEecCCcce
Confidence 877666554
No 147
>PRK10113 cell division modulator; Provisional
Probab=34.63 E-value=16 Score=24.59 Aligned_cols=15 Identities=33% Similarity=0.975 Sum_probs=12.6
Q ss_pred ccccCCCChHHHHHH
Q 032671 111 KFKLPQSTSRWKRKL 125 (136)
Q Consensus 111 ~~~~p~~~~~~~~~~ 125 (136)
-|-+|+++.||-.++
T Consensus 58 aFs~PEsAQRWAnQi 72 (80)
T PRK10113 58 AFSVPESAQRWANQI 72 (80)
T ss_pred ccCCcHHHHHHHHHh
Confidence 478999999998765
No 148
>KOG4361 consensus BCL2-associated athanogene-like proteins and related BAG family chaperone regulators [Signal transduction mechanisms]
Probab=34.07 E-value=27 Score=29.95 Aligned_cols=73 Identities=14% Similarity=0.129 Sum_probs=50.7
Q ss_pred ceEEEEEeCCCCCcEEEEecCCCcHH---HHHHHHHhccCCCCCCCce--EEEecCeecCCCCCCCCCCccccCCCCCCE
Q 032671 9 SVEITVKTIGPAPPSRLSVSSPIKVR---DLRKLIATSSANHLPIENL--RLVFRGKVLDDTQDDDDRDDVYLQLSNGDS 83 (136)
Q Consensus 9 ~m~I~VKt~~~~~~~~v~v~~~~TV~---eLK~~Ia~~~~~gi~~~~Q--RLI~~GK~L~D~~t~d~~~L~~~~I~dG~t 83 (136)
.++|.+..... .+.+.+.+..+.+ ++++...+ ..++....+ +++|.++.+.|... .+..++.++-+.
T Consensus 61 ~~~v~~~~~~~--~~~~~i~p~~~~g~~~d~a~~~~~--~ag~sh~d~~~k~~y~~~e~rd~~l----~l~~~g~p~~sk 132 (344)
T KOG4361|consen 61 GIRVQIEYGQL--GHGLAIVPQYPSGNALDLAKPLTE--DAGLSHYDQEVKLVYVDKELRDQSL----RLSSAGVPDASK 132 (344)
T ss_pred Cccceeeeccc--ccccccccccccccchhhhccccc--ccceeecccccccceeccccccccc----ccccccCccccc
Confidence 35555555333 2455666655555 77776666 778777776 99999999987666 599999999998
Q ss_pred EEEEec
Q 032671 84 VIAAVK 89 (136)
Q Consensus 84 Ilv~~~ 89 (136)
+.++..
T Consensus 133 ~~~~~~ 138 (344)
T KOG4361|consen 133 INVVPD 138 (344)
T ss_pred ceeccC
Confidence 855443
No 149
>PF02505 MCR_D: Methyl-coenzyme M reductase operon protein D; InterPro: IPR003901 Methyl-coenzyme M reductase (MCR) catalyses the reduction of methyl-coenzyme M (CH3-SCoM) and coenzyme B (HS-CoB) to methane and the corresponding heterosulphide CoM-S-S-CoB (2.8.4.1 from EC), the final step in methane biosynthesis. This reaction proceeds under anaerobic conditions by methanogenic Archaea [], and requires a nickel-porphinoid prosthetic group, coenzyme F430, which is in the EPR-detectable Ni(I) oxidation state in the active enzyme. Studies on a catalytically inactive enzyme aerobically co-crystallized with coenzyme M displayed a fully occupied coenzyme M-binding site with no alternate conformations. The binding of coenzyme M appears to induce specific conformational changes that suggests a molecular mechanism by which the enzyme ensures that methyl-coenzyme M enters the substrate channel prior to coenzyme B, as required by the active-site geometry []. MCR is a hexamer composed of 2 alpha, 2 beta, and 2 gamma subunits with two identical nickel porphinoid active sites, which form two long active site channels with F430 embedded at the bottom [, ]. Genes encoding the beta (mcrB) and gamma (mcrG) subunits of MCR are separated by two open reading frames coding for two proteins C and D [, ]. The function of proteins C and D is unknown. This entry represents protein D.; GO: 0015948 methanogenesis
Probab=33.92 E-value=97 Score=23.72 Aligned_cols=54 Identities=19% Similarity=0.186 Sum_probs=38.1
Q ss_pred CceEEEEEeCCCCCcEEEEecC-CCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCcccc
Q 032671 8 ESVEITVKTIGPAPPSRLSVSS-PIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYL 76 (136)
Q Consensus 8 ~~m~I~VKt~~~~~~~~v~v~~-~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~ 76 (136)
..|.++|+. | . +.+++.. ...+..+++.+.+...+++. +..|+-+....| +++|
T Consensus 66 ~~veL~V~v--G-r-i~lele~~~~~ie~I~~iCee~lpf~y~------i~~G~f~r~~~T-----vtDY 120 (153)
T PF02505_consen 66 EEVELTVKV--G-R-IILELEDEEDVIEKIREICEEVLPFGYD------IKEGKFIRTKPT-----VTDY 120 (153)
T ss_pred EEEEEEEEE--e-E-EEEEecCcHHHHHHHHHHHHHhCCCceE------eeeeEEeccCCc-----hhhh
Confidence 557777777 4 3 6788888 78899999988773333333 345888887777 7776
No 150
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=33.69 E-value=1.6e+02 Score=24.75 Aligned_cols=75 Identities=7% Similarity=0.064 Sum_probs=54.4
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEE--ecCeecCCCCCCCCCCccccCCCCCCEE
Q 032671 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLV--FRGKVLDDTQDDDDRDDVYLQLSNGDSV 84 (136)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI--~~GK~L~D~~t~d~~~L~~~~I~dG~tI 84 (136)
...-+|.||..+|+. +..++++..|+..++.-|.. .++..++-..|. |-=+.+.++. -.+.|..+++-+-.+|
T Consensus 208 ys~crlQiRl~DG~T-l~~tF~a~E~L~~VR~wVd~--n~~~~~~P~~f~t~fPR~tf~edD--~~KpLq~L~L~Psa~l 282 (290)
T KOG2689|consen 208 YSQCRLQIRLPDGQT-LTQTFNARETLAAVRLWVDL--NRGDGLDPYSFHTGFPRVTFTEDD--ELKPLQELDLVPSAVL 282 (290)
T ss_pred ccceEEEEEcCCCCe-eeeecCchhhHHHHHHHHHH--hccCCCCCeeeecCCCceeccccc--ccccHHHhccccchhe
Confidence 356789999999965 88899999999999999987 887666554442 3333443221 1267999999888877
Q ss_pred EE
Q 032671 85 IA 86 (136)
Q Consensus 85 lv 86 (136)
++
T Consensus 283 il 284 (290)
T KOG2689|consen 283 IL 284 (290)
T ss_pred ec
Confidence 54
No 151
>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function.
Probab=32.82 E-value=65 Score=22.91 Aligned_cols=33 Identities=18% Similarity=0.215 Sum_probs=23.9
Q ss_pred EEEecCeecCCCCCCCCCCccccCCCCCC-EEEEEecCC
Q 032671 54 RLVFRGKVLDDTQDDDDRDDVYLQLSNGD-SVIAAVKPK 91 (136)
Q Consensus 54 RLI~~GK~L~D~~t~d~~~L~~~~I~dG~-tIlv~~~p~ 91 (136)
.|-|.||.|..+.+ |++|--++.- +|+|+..++
T Consensus 3 ~LW~aGK~l~~~k~-----l~dy~GkNEKtKiivKl~~~ 36 (98)
T PF11069_consen 3 QLWWAGKELQRGKK-----LSDYIGKNEKTKIIVKLQKR 36 (98)
T ss_pred eEEeccccccCCCc-----HHHhcCCCcceeEEEEeccC
Confidence 46799999988888 9999444443 557777554
No 152
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=32.80 E-value=62 Score=22.09 Aligned_cols=39 Identities=10% Similarity=0.210 Sum_probs=33.1
Q ss_pred EEEEecCCCcHHHHHHHHHhccCCCCCCCceEE-EecCeecC
Q 032671 23 SRLSVSSPIKVRDLRKLIATSSANHLPIENLRL-VFRGKVLD 63 (136)
Q Consensus 23 ~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRL-I~~GK~L~ 63 (136)
..+.|++++|=.++|+.|.. .+++.+...+. ++.|+.--
T Consensus 23 ~tF~V~~~atK~~Ik~aie~--iy~V~V~~Vnt~~~~gk~kR 62 (91)
T PF00276_consen 23 YTFEVDPRATKTEIKEAIEK--IYGVKVKKVNTMNYPGKKKR 62 (91)
T ss_dssp EEEEETTTSTHHHHHHHHHH--HHTSEEEEEEEEEETSEEEE
T ss_pred EEEEEeCCCCHHHHHHHHHh--hcCCCeeEEEEeEeCCCceE
Confidence 67899999999999999998 99999988554 67787654
No 153
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=31.97 E-value=2e+02 Score=26.76 Aligned_cols=65 Identities=22% Similarity=0.125 Sum_probs=43.0
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEec
Q 032671 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAVK 89 (136)
Q Consensus 10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~~~ 89 (136)
=+|+|-|++|. .+.++..+|+.||=-.|+. ..|.-.-.= -..|+... -++.+++||+|=++..
T Consensus 360 ~~i~vfTPkG~---~~~lp~gst~~DfAy~ih~--~~g~~~~~a--~vng~~v~----------l~~~l~~gd~vei~t~ 422 (683)
T TIGR00691 360 EEIYVFTPKGD---VVELPSGSTPVDFAYAVHT--DVGNKCTGA--KVNGKIVP----------LDKELENGDVVEIITG 422 (683)
T ss_pred CceEEECCCCe---EEEcCCCCCHHHHHHHHhH--HhHhceeEE--EECCEECC----------CCccCCCCCEEEEEeC
Confidence 46788888884 5899999999999877765 433222211 24566543 3457999999944444
Q ss_pred CC
Q 032671 90 PK 91 (136)
Q Consensus 90 p~ 91 (136)
+.
T Consensus 423 ~~ 424 (683)
T TIGR00691 423 KN 424 (683)
T ss_pred CC
Confidence 43
No 154
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=31.88 E-value=51 Score=26.44 Aligned_cols=76 Identities=24% Similarity=0.315 Sum_probs=46.8
Q ss_pred CCceEEEEEeCCCCCc-EE----EEecCCCcHHHHHHHHHhccCCCCCCCceEEEec----Cee--cCCCCCCCCCCccc
Q 032671 7 SESVEITVKTIGPAPP-SR----LSVSSPIKVRDLRKLIATSSANHLPIENLRLVFR----GKV--LDDTQDDDDRDDVY 75 (136)
Q Consensus 7 ~~~m~I~VKt~~~~~~-~~----v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~----GK~--L~D~~t~d~~~L~~ 75 (136)
+..+-|++|.-..... +. +-|+.+.+|.+|-..|.+ ..|+|++..=++|- +++ ++...+ +..
T Consensus 66 ~~~iLlFlK~fDp~~q~L~~iGh~~v~~~~~v~~l~~~i~~--~~g~p~~t~l~lyEEi~~~~ie~i~~~~t-----~~~ 138 (249)
T PF12436_consen 66 SDDILLFLKYFDPETQTLRYIGHVYVPKNDKVSELVPLINE--RAGLPPDTPLLLYEEIKPNMIEPIDPNQT-----FEK 138 (249)
T ss_dssp TTEEEEEEEEEETTTTEEEEEEEEEEETT-BGGGTHHHHHH--HHT--TT--EEEEEEEETTEEEE--SSSB-----HHH
T ss_pred CCcEEEEEEeeCCCCCEEEEEeEEEECCCCCHHHHHHHHHH--HcCCCCCCceEEEEEeccceeeEcCCCCc-----hhh
Confidence 4568888885433321 22 568889999999999988 89999887555443 333 554555 999
Q ss_pred cCCCCCCEEEEEec
Q 032671 76 LQLSNGDSVIAAVK 89 (136)
Q Consensus 76 ~~I~dG~tIlv~~~ 89 (136)
..|.+||.|++-..
T Consensus 139 ~el~~GdIi~fQ~~ 152 (249)
T PF12436_consen 139 AELQDGDIICFQRA 152 (249)
T ss_dssp TT--TTEEEEEEE-
T ss_pred cccCCCCEEEEEec
Confidence 99999999976543
No 155
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=31.85 E-value=1.6e+02 Score=19.85 Aligned_cols=65 Identities=22% Similarity=0.291 Sum_probs=38.6
Q ss_pred EEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEe--cCeecCCCCCCCCCCccccCCCCCCEEEEEec
Q 032671 13 TVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVF--RGKVLDDTQDDDDRDDVYLQLSNGDSVIAAVK 89 (136)
Q Consensus 13 ~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~--~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~~~ 89 (136)
.|...+... ..-|-. .++.+|+.+..+ +++++.+..+|.. .|-...|+.- .. -+.++..++++..
T Consensus 6 kv~~~~r~~--k~Gv~A-~sL~eL~~K~~~--~l~~~~~~~~lvL~eDGT~VddEey-----F~--tLp~nT~lm~L~~ 72 (78)
T PF02017_consen 6 KVRNHDRSV--KKGVAA-SSLEELLEKACD--KLQLPEEPVRLVLEEDGTEVDDEEY-----FQ--TLPDNTVLMLLEK 72 (78)
T ss_dssp EEEETTSSC--EEEEEE-SSHHHHHHHHHH--HHT-SSSTCEEEETTTTCBESSCHH-----HC--CSSSSEEEEEEES
T ss_pred EEecCCCCc--eEeEEc-CCHHHHHHHHHH--HhCCCCcCcEEEEeCCCcEEccHHH-----Hh--hCCCCCEEEEECC
Confidence 444544433 233333 589999999988 9999987777765 4666654432 21 3555544555543
No 156
>KOG0007 consensus Splicing factor 3a, subunit 1 [RNA processing and modification]
Probab=31.83 E-value=23 Score=29.83 Aligned_cols=41 Identities=24% Similarity=0.395 Sum_probs=34.8
Q ss_pred EEEEec-CCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCC
Q 032671 23 SRLSVS-SPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDT 65 (136)
Q Consensus 23 ~~v~v~-~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~ 65 (136)
+.+.+. ....+..||.+++. ..+++++-|++.+.|..|+|.
T Consensus 295 ~~~~~~~~~~~~~~~k~k~~~--~~~i~~~~q~~~~~~~~l~d~ 336 (341)
T KOG0007|consen 295 IKITVQSLSENVASLKEKIAD--ESQIPANKQKLRGEGAFLKDN 336 (341)
T ss_pred eeecccccccccccccccccc--ccccchhheeeccCCcccCcc
Confidence 344555 45679999999998 999999999999999999986
No 157
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=31.81 E-value=1.9e+02 Score=27.46 Aligned_cols=61 Identities=16% Similarity=0.122 Sum_probs=42.5
Q ss_pred EEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EEEe
Q 032671 11 EITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IAAV 88 (136)
Q Consensus 11 ~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI-lv~~ 88 (136)
+|+|-|++|. .+.++..+|+.||=-.|+. ..|.-...= -..|+... -++.+++||+| ++-.
T Consensus 405 ~V~VfTPkG~---~~~Lp~gaT~lDfAy~iHt--~iG~~~~gA--kvng~~v~----------l~~~L~~GD~VeIits 466 (743)
T PRK10872 405 RVYVFTPKGD---VVDLPAGSTPLDFAYHIHS--DVGHRCIGA--KIGGRIVP----------FTYQLQMGDQIEIITQ 466 (743)
T ss_pred eEEEECCCCC---eEEcCCCCcHHHHHHHHhH--HHHhhceEE--EECCEECC----------CCcCCCCCCEEEEEeC
Confidence 5889998885 5899999999999887876 443222222 25666553 34579999999 5543
No 158
>PF03607 DCX: Doublecortin; InterPro: IPR003533 X-linked lissencephaly is a severe brain malformation affecting males. Recently it has been demonstrated that the doublecortin gene is implicated in this disorder []. Doublecortin was found to bind to the microtubule cytoskeleton. In vivo and in vitro assays show that Doublecortin stabilises microtubules and causes bundling []. Doublecortin is a basic protein with an iso-electric point of 10, typical of microtubule-binding proteins. However, its sequence contains no known microtubule-binding domain(s). The detailed sequence analysis of Doublecortin and Doublecortin-like proteins allowed the identification of an evolutionarily conserved Doublecortin (DC) domain. This domain is found in the N terminus of proteins and consists of one or two tandemly repeated copies of an around 80 amino acids region. It has been suggested that the first DC domain of Doublecortin binds tubulin and enhances microtubule polymerisation []. Some proteins known to contain a DC domain are listed below: Doublecortin. It is required for neuronal migration []. A large number of point mutations in the human DCX gene leading to lissencephaly are located within the DC domains []. Human serine/threonine-protein kinase DCAMKL1. It is a probable kinase that may be involved in a calcium-signaling pathway controling neuronal migration in the developing brain []. Retinitis pigmentosa 1 protein. It could play a role in the differentiation of photoreceptor cells. Mutation in the human RP1 gene cause retinitis pigmentosa of type 1 []. ; GO: 0035556 intracellular signal transduction; PDB: 1UF0_A 1MG4_A 1MFW_A 2DNF_A 2XRP_I 2BQQ_A 1MJD_A.
Probab=31.79 E-value=1.3e+02 Score=18.71 Aligned_cols=43 Identities=26% Similarity=0.330 Sum_probs=29.1
Q ss_pred CcHHHHHHHHHhccCCCCCCCceEEEe--cCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032671 31 IKVRDLRKLIATSSANHLPIENLRLVF--RGKVLDDTQDDDDRDDVYLQLSNGDSVIA 86 (136)
Q Consensus 31 ~TV~eLK~~Ia~~~~~gi~~~~QRLI~--~GK~L~D~~t~d~~~L~~~~I~dG~tIlv 86 (136)
-|..+|-+.|.+ +-+++-. -|-+| .|+.+.+ +++ |++|+..++
T Consensus 9 ~s~e~lL~~it~--~v~l~~g-Vr~lyt~~G~~V~~--------l~~--l~dg~~yVa 53 (60)
T PF03607_consen 9 RSFEQLLDEITE--KVQLPSG-VRKLYTLDGKRVKS--------LDE--LEDGGSYVA 53 (60)
T ss_dssp SSHHHHHHHHHH--SSSSTTS--SEEEETTSSEESS--------GGG--S-TTEEEEE
T ss_pred cCHHHHHHHHHh--hcCCCcc-cceEECCCCCEeCC--------HHH--HCCCCEEEE
Confidence 578999999988 7777755 55555 4877753 665 888866443
No 159
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=31.69 E-value=32 Score=20.76 Aligned_cols=17 Identities=29% Similarity=0.487 Sum_probs=14.9
Q ss_pred CChHHHHHHHHhccccc
Q 032671 117 STSRWKRKLLLFSPQQV 133 (136)
Q Consensus 117 ~~~~~~~~~~~~~~~~~ 133 (136)
|.++|++..-.|.++|+
T Consensus 1 ~~s~~~~~~~~f~~nk~ 17 (56)
T PF12911_consen 1 SRSPWKDAWRRFRRNKL 17 (56)
T ss_pred CCCHHHHHHHHHHhCch
Confidence 46899999999999986
No 160
>PF03658 Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR005346 This is a small family of proteins of unknown function.; PDB: 2HJ1_B.
Probab=30.92 E-value=1.8e+02 Score=19.94 Aligned_cols=66 Identities=21% Similarity=0.230 Sum_probs=32.3
Q ss_pred eEEEEEeCCCCC--cEEEEecCCCcHHHHHHH--HHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-
Q 032671 10 VEITVKTIGPAP--PSRLSVSSPIKVRDLRKL--IATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV- 84 (136)
Q Consensus 10 m~I~VKt~~~~~--~~~v~v~~~~TV~eLK~~--Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI- 84 (136)
|+|.|-...... .+.++++..+||.+-=++ |.+ ..-.+..+..++=.-||..+-+ .-+++||.|
T Consensus 1 i~VeV~yA~p~~q~~~~l~vp~GtTv~~Ai~~Sgi~~-~~p~idl~~~~vGIfGk~~~~d----------~~L~~GDRVE 69 (84)
T PF03658_consen 1 IRVEVAYALPERQVILTLEVPEGTTVAQAIEASGILE-QFPEIDLEKNKVGIFGKLVKLD----------TVLRDGDRVE 69 (84)
T ss_dssp EEEEEEEEETTCEEEEEEEEETT-BHHHHHHHHTHHH-H-TT--TTTSEEEEEE-S--TT-----------B--TT-EEE
T ss_pred CEEEEEEECCCeEEEEEEECCCcCcHHHHHHHcCchh-hCcccCcccceeeeeeeEcCCC----------CcCCCCCEEE
Confidence 455555433333 245899999998875432 221 0335677788884445555422 258999999
Q ss_pred EE
Q 032671 85 IA 86 (136)
Q Consensus 85 lv 86 (136)
+.
T Consensus 70 IY 71 (84)
T PF03658_consen 70 IY 71 (84)
T ss_dssp EE
T ss_pred Ee
Confidence 65
No 161
>KOG3391 consensus Transcriptional co-repressor component [Transcription]
Probab=30.57 E-value=47 Score=25.21 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=19.0
Q ss_pred CCCCCCccccCCCCCCEE-EEEecCC
Q 032671 67 DDDDRDDVYLQLSNGDSV-IAAVKPK 91 (136)
Q Consensus 67 t~d~~~L~~~~I~dG~tI-lv~~~p~ 91 (136)
.+|+++|..++++-||.| +.+..|+
T Consensus 114 ~ddnktL~~~kf~iGD~lDVaI~~p~ 139 (151)
T KOG3391|consen 114 IDDNKTLQQTKFEIGDYLDVAITPPN 139 (151)
T ss_pred CCccchhhhCCccccceEEEEecCcc
Confidence 455667999999999999 5555443
No 162
>PF09014 Sushi_2: Beta-2-glycoprotein-1 fifth domain; InterPro: IPR015104 The fifth domain of beta-2-glycoprotein-1 (b2GP-1) is composed of four well-defined anti-parallel beta-strands and two short alpha-helices, as well as a long highly flexible loop. It plays an important role in the binding of b2GP-1 to negatively charged compounds and subsequent capture for binding of anti-b2GP-1 antibodies []. ; PDB: 1C1Z_A 3OP8_B 2KRI_A 1QUB_A 1G4G_A 1G4F_A.
Probab=28.72 E-value=33 Score=23.80 Aligned_cols=61 Identities=18% Similarity=0.310 Sum_probs=30.8
Q ss_pred CCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EEEecCCCCCcccccccCCCCcccccccccCC
Q 032671 45 ANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IAAVKPKPPPRHLRDDTCIDDDDLDLKFKLPQ 116 (136)
Q Consensus 45 ~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI-lv~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~ 116 (136)
...||+.+=|++|.|+.+.-. .+..-+|.-|++| ++.-.+.-.=....+..|+| ..+.+|+
T Consensus 3 ~C~i~vkra~Vly~g~k~~i~------d~~~~~v~Hge~VsffCknkekkCsy~~~~qC~D-----G~l~iP~ 64 (85)
T PF09014_consen 3 PCKIPVKRARVLYNGEKVWIQ------DLFKNGVLHGEIVSFFCKNKEKKCSYTVDAQCID-----GTLEIPE 64 (85)
T ss_dssp EB--SSSS-EEEETTEEEEHH------HHTTT-BETT-EEEEEEEETTTTEEEEEEEEEET-----TEE---T
T ss_pred ccccceeEEEEEECCEEechh------hcccCceeeCCEEEEEEcCCcccCCCccccEEec-----CcccCcc
Confidence 467899999999999987411 1455689999999 44443332211112233544 4566775
No 163
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=28.06 E-value=1.5e+02 Score=20.34 Aligned_cols=38 Identities=11% Similarity=0.188 Sum_probs=32.2
Q ss_pred EEEEecCCCcHHHHHHHHHhccCCCCCCCceEE-EecCeec
Q 032671 23 SRLSVSSPIKVRDLRKLIATSSANHLPIENLRL-VFRGKVL 62 (136)
Q Consensus 23 ~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRL-I~~GK~L 62 (136)
+.+.|++.+|=.++|+.|.. .+++.+...+- ++.|+.-
T Consensus 23 ~~F~V~~~a~K~eIK~aie~--lf~VkV~~VnT~~~~gk~k 61 (92)
T PRK05738 23 YVFEVAPDATKPEIKAAVEK--LFGVKVESVNTLNVKGKTK 61 (92)
T ss_pred EEEEECCCCCHHHHHHHHHH--HcCCceeEEEEEEeCCcee
Confidence 78899999999999999998 99999988554 5667664
No 164
>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades. This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The protein resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains []. ; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0045116 protein neddylation; PDB: 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H 1YOV_B 3FN1_A ....
Probab=27.82 E-value=99 Score=21.00 Aligned_cols=58 Identities=21% Similarity=0.322 Sum_probs=37.3
Q ss_pred EEecCCCcHHHHHHHHHhccCCC-------CCCCceEEEecCe-ecCCCCCCC--CCCccccCCCCCCEEEE
Q 032671 25 LSVSSPIKVRDLRKLIATSSANH-------LPIENLRLVFRGK-VLDDTQDDD--DRDDVYLQLSNGDSVIA 86 (136)
Q Consensus 25 v~v~~~~TV~eLK~~Ia~~~~~g-------i~~~~QRLI~~GK-~L~D~~t~d--~~~L~~~~I~dG~tIlv 86 (136)
|++++++|+.+|-+.+.+ ... +.-+.-.|++.+- .|.. .+.. +++|.++ +.+|+.|+|
T Consensus 1 i~v~~~~TL~~lid~L~~--~~~~qlk~PSlt~~~k~LYm~~pp~Lee-~Tr~NL~k~l~eL-~~~g~ei~V 68 (84)
T PF08825_consen 1 IEVSPSWTLQDLIDSLCE--KPEFQLKKPSLTTANKTLYMQSPPSLEE-ATRPNLSKKLKEL-LSDGEEITV 68 (84)
T ss_dssp EEESTTSBSHHHHHHHHH--STTT--SS-EEESSEEEEEESSSHHHHH-HTGGGGSSBTTTT-HHSSEEEEE
T ss_pred CCcCccchHHHHHHHHHh--ChhhhcCCCcccCCCceEEEeCCHHHHH-HhhhhhhhhHHHH-hcCCCEEEE
Confidence 578999999999999988 532 2334455655554 1111 1111 1558888 999998876
No 165
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=27.78 E-value=1.4e+02 Score=20.50 Aligned_cols=56 Identities=27% Similarity=0.251 Sum_probs=30.7
Q ss_pred EecCCCcHHHHHHHHHhccCCCCCCCceEEEec-Ce------ecCCCCCCCCCCc--cccCCCCCCEEEEE
Q 032671 26 SVSSPIKVRDLRKLIATSSANHLPIENLRLVFR-GK------VLDDTQDDDDRDD--VYLQLSNGDSVIAA 87 (136)
Q Consensus 26 ~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~-GK------~L~D~~t~d~~~L--~~~~I~dG~tIlv~ 87 (136)
++...+||++|=+.+.+ .. +..+.+|+.. |+ +|-++.. -..+ .++-+++||.|.+.
T Consensus 24 ~~~~~~tV~dll~~L~~--~~--~~~~~~lf~~~g~lr~~i~VlvN~~d--i~~l~g~~t~L~dgD~v~i~ 88 (94)
T cd01764 24 DGEKPVTVGDLLDYVAS--NL--LEERPDLFIEGGSVRPGIIVLINDTD--WELLGEEDYILEDGDHVVFI 88 (94)
T ss_pred cCCCCCcHHHHHHHHHH--hC--chhhhhhEecCCcccCCEEEEECCcc--ccccCCcccCCCCcCEEEEE
Confidence 33356899999888866 43 4444444432 21 2222211 0112 35679999999544
No 166
>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]
Probab=26.44 E-value=2.6e+02 Score=20.46 Aligned_cols=73 Identities=12% Similarity=0.182 Sum_probs=49.9
Q ss_pred CceEEEEEeCCCCCcE---EEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCC
Q 032671 8 ESVEITVKTIGPAPPS---RLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGD 82 (136)
Q Consensus 8 ~~m~I~VKt~~~~~~~---~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~ 82 (136)
..++|.+|-.++...+ ...|+++.|++-+-.-|.. ..+++.+.|-++|-.......-...=++|.+|--.+|.
T Consensus 29 ~kV~i~l~aiG~~PilK~~k~~i~~t~tfa~vi~Flkk--~Lkl~as~slflYVN~sFAPsPDq~v~~Ly~cf~~d~~ 104 (116)
T KOG3439|consen 29 RKVQIRLRAIGDAPILKKSKFKINPTQTFAKVILFLKK--FLKLQASDSLFLYVNNSFAPSPDQIVGNLYECFGTDGK 104 (116)
T ss_pred ceEEEEEeccCCCcceecceEEeCcchhhHHHHHHHHH--HhCCcccCeEEEEEcCccCCCchhHHHHHHHhcCCCCE
Confidence 3478888877765422 2689999999999988888 88999999999998777643211001345555445553
No 167
>cd01782 AF6_RA_repeat1 Ubiquitin domain of AT-6, first repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=26.43 E-value=1.8e+02 Score=21.15 Aligned_cols=41 Identities=15% Similarity=0.127 Sum_probs=32.9
Q ss_pred CCceEEEEEeCCCCCcE-EEEecCCCcHHHHHHHHHhccCCCCC
Q 032671 7 SESVEITVKTIGPAPPS-RLSVSSPIKVRDLRKLIATSSANHLP 49 (136)
Q Consensus 7 ~~~m~I~VKt~~~~~~~-~v~v~~~~TV~eLK~~Ia~~~~~gi~ 49 (136)
.+.|..++...+++-.. .|.|++.+|+.++-+.+-+ ++.++
T Consensus 21 ~gvmrf~~qd~~~k~atK~VrVsS~~tt~eVI~~LLe--KFk~d 62 (112)
T cd01782 21 HGVMRFYFQDGGEKVATKCIRVSSTATTRDVIDTLSE--KFRPD 62 (112)
T ss_pred eeEEEEEEEcCCCcEEEEEEEEecCCCHHHHHHHHHH--Hhccc
Confidence 46799999988876532 3899999999999999888 88754
No 168
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=25.96 E-value=1.3e+02 Score=20.71 Aligned_cols=43 Identities=14% Similarity=0.146 Sum_probs=29.5
Q ss_pred EEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCc-eEEEe
Q 032671 13 TVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIEN-LRLVF 57 (136)
Q Consensus 13 ~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~-QRLI~ 57 (136)
+||..-+...+...+++..|..+|.+++.+ .+....++ ..+-|
T Consensus 2 ~~K~~y~gdi~it~~d~~~s~e~L~~~v~~--~c~~~~~q~ft~kw 45 (83)
T cd06404 2 RVKAAYNGDIMITSIDPSISLEELCNEVRD--MCRFHNDQPFTLKW 45 (83)
T ss_pred eEEEEecCcEEEEEcCCCcCHHHHHHHHHH--HhCCCCCCcEEEEE
Confidence 445443444356789999999999999998 77765543 44434
No 169
>PF10729 CedA: Cell division activator CedA; InterPro: IPR019666 CedA is made up of four antiparallel beta-strands and an alpha-helix. It activates cell division by inhibiting chromosome over-replication. This is mediated by binding to dsDNA via the beta-sheet [, ]. ; GO: 0003677 DNA binding, 0051301 cell division; PDB: 2BN8_A 2D35_A.
Probab=25.37 E-value=19 Score=24.25 Aligned_cols=15 Identities=33% Similarity=0.975 Sum_probs=12.4
Q ss_pred ccccCCCChHHHHHH
Q 032671 111 KFKLPQSTSRWKRKL 125 (136)
Q Consensus 111 ~~~~p~~~~~~~~~~ 125 (136)
-|-+|+++.||-.++
T Consensus 58 ~fs~pesaqrwa~q~ 72 (80)
T PF10729_consen 58 AFSVPESAQRWANQI 72 (80)
T ss_dssp -BSSHHHHHHHHHHH
T ss_pred CcCCcHHHHHHHHHh
Confidence 488999999998765
No 170
>TIGR03260 met_CoM_red_D methyl-coenzyme M reductase operon protein D. Members of this protein family are protein D, a non-structural protein, of the operon for methyl coenzyme M reductase, also called coenzyme-B sulfoethylthiotransferase (EC 2.8.4.1). That enzyme, with alpha, beta, and gamma subunits, catalyzes the last step in methanogenesis; it has several modified sites, so accessory proteins are expected. Several methanogens have encode two such enzymes, designated I and II; this model does not separate the isozymes. Proteins in this family are expressed at much lower levels than the methyl-coenzyme M reductase itself and associate and have been shown to form at least transient associations. The precise function is unknown.
Probab=24.94 E-value=1.5e+02 Score=22.56 Aligned_cols=54 Identities=19% Similarity=0.139 Sum_probs=36.9
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCcccc
Q 032671 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYL 76 (136)
Q Consensus 8 ~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~ 76 (136)
+.|.++|+. | . +-+++.....+.++++.+.+...+++. +..|+-+....| +++|
T Consensus 65 ~~veL~V~V--G-r-I~le~~~~~~i~~I~eiC~e~~pF~y~------i~~g~f~r~~~T-----vtDY 118 (150)
T TIGR03260 65 EDVELRVQV--G-R-IILELEDEDIVEEIEEICKEMLPFGYE------VRVGKFLRTKPT-----VTDY 118 (150)
T ss_pred EEEEEEEEE--e-E-EEEEecCHHHHHHHHHHHHhhCCCceE------eeeeeEeecCCc-----hhhh
Confidence 457777777 4 2 567888888999999988773333333 355777776666 7766
No 171
>PF11305 DUF3107: Protein of unknown function (DUF3107); InterPro: IPR021456 Some members in this family of proteins are annotated as ATP-binding proteins however this cannot be confirmed. Currently no function is known.
Probab=24.15 E-value=1.8e+02 Score=19.56 Aligned_cols=31 Identities=16% Similarity=0.247 Sum_probs=22.8
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHh
Q 032671 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIAT 42 (136)
Q Consensus 10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~ 42 (136)
|+|+|=..+.. ..+.++.+.|-.++.++|..
T Consensus 1 MeIkIGi~~~~--REl~ies~~s~dev~~~v~~ 31 (74)
T PF11305_consen 1 MEIKIGIQNVA--RELVIESDQSADEVEAAVTD 31 (74)
T ss_pred CeEEEeeecCC--ceEEEecCCCHHHHHHHHHH
Confidence 44455444443 47888899999999999988
No 172
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=24.00 E-value=1.3e+02 Score=21.24 Aligned_cols=37 Identities=19% Similarity=0.209 Sum_probs=25.2
Q ss_pred EEecCCCcHHHHHHHHHhccCCCCCCCc-eEEEecCeecC
Q 032671 25 LSVSSPIKVRDLRKLIATSSANHLPIEN-LRLVFRGKVLD 63 (136)
Q Consensus 25 v~v~~~~TV~eLK~~Ia~~~~~gi~~~~-QRLI~~GK~L~ 63 (136)
+=|+.+.||.+|...|.. ..+++++. .=|+.++....
T Consensus 37 fLvp~~~tv~qf~~~ir~--rl~l~~~~alfl~Vn~~lp~ 74 (104)
T PF02991_consen 37 FLVPKDLTVGQFVYIIRK--RLQLSPEQALFLFVNNTLPS 74 (104)
T ss_dssp EEEETTSBHHHHHHHHHH--HTT--TTS-EEEEBTTBESS
T ss_pred EEEcCCCchhhHHHHhhh--hhcCCCCceEEEEEcCcccc
Confidence 458899999999999988 88887775 44444453333
No 173
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=23.68 E-value=2.4e+02 Score=19.10 Aligned_cols=50 Identities=18% Similarity=0.278 Sum_probs=35.2
Q ss_pred eEEEEEeCCCCCcE---EEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCee
Q 032671 10 VEITVKTIGPAPPS---RLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKV 61 (136)
Q Consensus 10 m~I~VKt~~~~~~~---~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~ 61 (136)
++|.+|..+.-..+ .+-|+.+.|+.+|..-|.. +.++.+++-=.+|-+..
T Consensus 2 v~i~~~~~g~~p~l~k~kflv~~~~tv~~~~~~lrk--~L~l~~~~slflyvnn~ 54 (87)
T cd01612 2 VTIRFKPIGSAPILKQKVFKISATQSFQAVIDFLRK--RLKLKASDSLFLYINNS 54 (87)
T ss_pred eEEEEEECCCCccccccEEEeCCCCCHHHHHHHHHH--HhCCCccCeEEEEECCc
Confidence 56777766654322 2679999999999999988 77777666444555554
No 174
>PF09662 Phenyl_P_gamma: Phenylphosphate carboxylase gamma subunit (Phenyl_P_gamma); InterPro: IPR014097 Members of this protein family are the gamma subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. The gamma subunit has no known homologues.
Probab=23.54 E-value=1.2e+02 Score=20.92 Aligned_cols=48 Identities=15% Similarity=0.224 Sum_probs=31.8
Q ss_pred CCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeec
Q 032671 6 ISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVL 62 (136)
Q Consensus 6 ~~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L 62 (136)
++..+++.||+.+.+. ...+-..+|+.++. ...-.|++..+-|.-..|
T Consensus 16 Eg~elel~VR~LnPG~-------~KY~~~~VkA~vSs--dp~~yPd~L~VRfgRGql 63 (84)
T PF09662_consen 16 EGKELELTVRDLNPGI-------HKYTYQWVKAEVSS--DPDKYPDKLQVRFGRGQL 63 (84)
T ss_pred CCCEEEEEEEecCcch-------hHHHHHhhhhhhcC--CcccCChheEEecccCcc
Confidence 4577899999887765 22455788888876 555556776665553333
No 175
>PF10407 Cytokin_check_N: Cdc14 phosphatase binding protein N-terminus ; InterPro: IPR018844 Cytokinesis in yeasts involves a family of proteins whose essential function is to bind Cdc14-family phosphatase and prevent this from being sequestered and inhibited in the nucleolus. This is the highly conserved N terminus of a family of proteins which act as cytokinesis checkpoint controls by allowing cells to cope with cytokinesis defects. These proteins are required for rDNA silencing and mini-chromosome maintenance [].
Probab=23.16 E-value=2.4e+02 Score=18.80 Aligned_cols=32 Identities=13% Similarity=-0.029 Sum_probs=22.5
Q ss_pred EEEEecCCCcHHHHHHHHHhccCC-CCCCCceEEE
Q 032671 23 SRLSVSSPIKVRDLRKLIATSSAN-HLPIENLRLV 56 (136)
Q Consensus 23 ~~v~v~~~~TV~eLK~~Ia~~~~~-gi~~~~QRLI 56 (136)
+-.-..++.|+.+|+..|.+ ++ .++|....+.
T Consensus 5 FLhlt~~~~tl~~L~~eI~~--~f~kLYP~~~~~~ 37 (73)
T PF10407_consen 5 FLHLTDPNNTLSQLKEEIEE--RFKKLYPNEPELE 37 (73)
T ss_pred EEEEeCCCCcHHHHHHHHHH--HHHHHCCCCCCce
Confidence 33446678999999999988 65 3566655443
No 176
>cd02413 40S_S3_KH K homology RNA-binding (KH) domain of the eukaryotic 40S small ribosomal subunit protein S3. S3 is part of the head region of the 40S ribosomal subunit and is believed to interact with mRNA as it threads its way from the latch into the channel. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=22.37 E-value=2.5e+02 Score=18.72 Aligned_cols=43 Identities=16% Similarity=0.296 Sum_probs=30.3
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEE
Q 032671 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRL 55 (136)
Q Consensus 8 ~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRL 55 (136)
..++|+|.+....- +--....++.+|++.++. .++++..+..+
T Consensus 30 ~~i~I~I~tarPg~---vIG~~G~~i~~L~~~L~k--~~~~~~~~i~v 72 (81)
T cd02413 30 TRTEIIIRATRTQN---VLGEKGRRIRELTSLVQK--RFNFPEGSVEL 72 (81)
T ss_pred CeEEEEEEeCCCce---EECCCchhHHHHHHHHHH--HhCCCCCeEEE
Confidence 44667777755532 223345789999999998 89998777665
No 177
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=21.77 E-value=67 Score=25.14 Aligned_cols=36 Identities=8% Similarity=0.076 Sum_probs=22.4
Q ss_pred EEEEecCCCcHHHHHHHHHhccCCCCCCCc---eE--EEecCe
Q 032671 23 SRLSVSSPIKVRDLRKLIATSSANHLPIEN---LR--LVFRGK 60 (136)
Q Consensus 23 ~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~---QR--LI~~GK 60 (136)
+.+.|.++.|+.++|+.|++ ++|++... .| ++..++
T Consensus 135 F~f~v~~gE~f~~tK~Rl~~--rlgv~~keF~K~Kfaiv~~~~ 175 (213)
T PF14533_consen 135 FLFVVKPGETFSDTKERLQK--RLGVSDKEFEKWKFAIVQNSR 175 (213)
T ss_dssp EEEEEETT--HHHHHHHHHH--HH---HHHHTT-EEEEEETTE
T ss_pred EEEEeeCCCcHHHHHHHHHH--HhCCChhhheeEEEEEEecCC
Confidence 33688899999999999999 99987544 33 444554
No 178
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=21.53 E-value=2.6e+02 Score=18.71 Aligned_cols=43 Identities=12% Similarity=0.113 Sum_probs=34.4
Q ss_pred eCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCee
Q 032671 16 TIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKV 61 (136)
Q Consensus 16 t~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~ 61 (136)
-++|+. -.+.+.+..||.++=..+-+ +-|+.++--.++.-|+.
T Consensus 6 LPdg~~-T~V~vrpG~ti~d~L~klle--kRgl~~~~~~vf~~g~~ 48 (73)
T cd01817 6 LPDGST-TVVPTRPGESIRDLLSGLCE--KRGINYAAVDLFLVGGD 48 (73)
T ss_pred CCCCCe-EEEEecCCCCHHHHHHHHHH--HcCCChhHEEEEEecCC
Confidence 345554 56899999999999999988 89999998887766653
No 179
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=21.12 E-value=1.3e+02 Score=26.03 Aligned_cols=70 Identities=17% Similarity=0.091 Sum_probs=48.5
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecC---eecCCCCCCCCCCccccCCCCCCEE
Q 032671 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRG---KVLDDTQDDDDRDDVYLQLSNGDSV 84 (136)
Q Consensus 10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~G---K~L~D~~t~d~~~L~~~~I~dG~tI 84 (136)
-.|.||.++|.. ....+-.+.+|.-|=.-++. .--|.+-.+.+|++.= |.|. .. -+.|+.++||.+-.++
T Consensus 278 t~i~vR~pdG~R-~qrkf~~sepv~ll~~~~~s-~~dg~~k~~FkLv~a~P~~k~l~-~~--~daT~~eaGL~nS~~~ 350 (356)
T KOG1364|consen 278 TSIQVRFPDGRR-KQRKFLKSEPVQLLWSFCYS-HMDGSDKKRFKLVQAIPASKTLD-YG--ADATFKEAGLANSETL 350 (356)
T ss_pred eEEEEecCCccH-HHHhhccccHHHHHHHHHHH-hhcccccccceeeecccchhhhh-cc--ccchHHHhccCccccc
Confidence 349999999976 33455666677777665554 2346788889999776 4443 22 2477999999988764
No 180
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=20.77 E-value=2.7e+02 Score=18.64 Aligned_cols=54 Identities=20% Similarity=0.302 Sum_probs=35.3
Q ss_pred EEecCCCcHHHHHHHHHhccCCCCCCCceEEEe--cCeecCCCCCCCCCCccccCCCCCCEEEEEe
Q 032671 25 LSVSSPIKVRDLRKLIATSSANHLPIENLRLVF--RGKVLDDTQDDDDRDDVYLQLSNGDSVIAAV 88 (136)
Q Consensus 25 v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~--~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~~ 88 (136)
.-|.. .|..+|+.+..+ +++++...-+|.+ .|-.++|+.- .. -+.++..++++.
T Consensus 14 ~GV~A-~sL~eL~~K~~~--~l~l~~~~~~l~L~eDGT~VddEey-----F~--tLp~nt~l~~L~ 69 (74)
T smart00266 14 KGVAA-SSLEELLSKVCD--KLALPDSPVTLVLEEDGTIVDDEEY-----FQ--TLPDNTELMALE 69 (74)
T ss_pred EEEEc-CCHHHHHHHHHH--HhCCCCCCcEEEEecCCcEEccHHH-----Hh--cCCCCcEEEEEc
Confidence 34443 489999999998 9999876666644 5888865544 22 345554445543
No 181
>COG1977 MoaD Molybdopterin converting factor, small subunit [Coenzyme metabolism]
Probab=20.62 E-value=1.4e+02 Score=19.89 Aligned_cols=47 Identities=19% Similarity=0.192 Sum_probs=26.7
Q ss_pred CCcHHHHHHHHHhccCCCCC---CCceEE-E-ecCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 032671 30 PIKVRDLRKLIATSSANHLP---IENLRL-V-FRGKVLDDTQDDDDRDDVYLQLSNGDSVIAA 87 (136)
Q Consensus 30 ~~TV~eLK~~Ia~~~~~gi~---~~~QRL-I-~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~ 87 (136)
..|+.+|.+.+.+ +.... -..+++ . .....+.+.. +.|++||+|.++
T Consensus 27 ~~tv~~L~~~l~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~---------t~L~dGDeVa~~ 78 (84)
T COG1977 27 GATVGELEELLPK--EGERWLLALEDNIVVNAANNEFLVGLD---------TPLKDGDEVAFF 78 (84)
T ss_pred HHHHHHHHHHHHh--hhhhHHhccCccceEEeeeceeecccc---------ccCCCCCEEEEe
Confidence 5799999999866 44311 111221 1 2223444333 389999999543
No 182
>cd01783 DAGK_delta_RA Ubiquitin-like domain of Diacylgylcerol kinase (DAGK). DAGK_delta_RA Diacylgylcerol kinase (DAGK) phosphorylates the second messenger diacylglycerol to phosphatidic acid as part of a protein kinase C pathway. Nine mammalian DAGK isotypes have been identified, which are classified into five subgroups according to their domain architecture and the DAGK-delta and -theta isozymes, which fall into one such group, contain an RA (Ras-associated) domain. DAGKs also contain a conserved catalytic domain (DAGKc), an assesory domain (DAGKa), and an array of conserved motifs that are likely to play a role in lipid-protein and protein-protein interactions in various DAG/PA-dependent signalling pathways.
Probab=20.42 E-value=3.2e+02 Score=19.26 Aligned_cols=47 Identities=19% Similarity=0.174 Sum_probs=30.0
Q ss_pred CCceEEEEEeCCCCCc-EEEEecCCCcHHHHHHHHHhccCCCCCC---CceEE
Q 032671 7 SESVEITVKTIGPAPP-SRLSVSSPIKVRDLRKLIATSSANHLPI---ENLRL 55 (136)
Q Consensus 7 ~~~m~I~VKt~~~~~~-~~v~v~~~~TV~eLK~~Ia~~~~~gi~~---~~QRL 55 (136)
.++++|+-=+..-..+ .+|.|+.++|+.++=...-+ ++|+.. ++.+|
T Consensus 2 ~g~iKVY~G~L~~~~~y~sv~V~~~tt~~dvv~eaL~--kfGl~~~~~~~y~L 52 (97)
T cd01783 2 KEVVKVYPGWLRVGVAYVSIRVNKDTTVQDVILEVLP--LFGLQAECPESFRL 52 (97)
T ss_pred CceEEEecCccccCcceEEEEecccchHHHHHHHHHH--HhCcccCCccccEE
Confidence 3455665544433232 35889999999998777666 787654 44454
No 183
>PTZ00490 Ferredoxin superfamily; Provisional
Probab=20.08 E-value=2e+02 Score=21.45 Aligned_cols=29 Identities=14% Similarity=0.164 Sum_probs=24.8
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHH
Q 032671 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDL 36 (136)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~v~v~~~~TV~eL 36 (136)
++.++|+|....|.. +.++++...|+.+.
T Consensus 33 ~g~v~I~~~~~dG~~-~~v~~~~G~sLLea 61 (143)
T PTZ00490 33 PGKVKVCVKKRDGTH-CDVEVPVGMSLMHA 61 (143)
T ss_pred CCcEEEEEEcCCCCE-EEEEECCCccHHHH
Confidence 568999999998976 78999999998775
Done!