Query 032671
Match_columns 136
No_of_seqs 117 out of 1109
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 06:42:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032671.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032671hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a20_A Ubiquitin-like protein 99.8 2.8E-19 9.7E-24 125.0 10.5 75 7-89 17-95 (98)
2 2wyq_A HHR23A, UV excision rep 99.8 2.5E-19 8.5E-24 119.4 9.7 76 8-91 4-82 (85)
3 3plu_A Ubiquitin-like modifier 99.8 1.4E-19 4.8E-24 126.0 8.5 72 5-84 17-88 (93)
4 3phx_B Ubiquitin-like protein 99.8 4.2E-19 1.4E-23 117.1 9.1 73 8-88 3-75 (79)
5 4dwf_A HLA-B-associated transc 99.8 5.1E-19 1.7E-23 119.5 9.4 76 6-90 2-77 (90)
6 2lxa_A Ubiquitin-like protein 99.8 2.4E-19 8.2E-24 122.9 7.8 76 9-92 1-80 (87)
7 3m62_B UV excision repair prot 99.8 2.7E-19 9.3E-24 125.7 7.6 75 9-91 1-76 (106)
8 3v6c_B Ubiquitin; structural g 99.8 8E-19 2.7E-23 119.3 9.3 77 4-88 12-88 (91)
9 2kk8_A Uncharacterized protein 99.8 4.6E-19 1.6E-23 119.9 7.7 75 8-90 9-84 (84)
10 1uel_A HHR23B, UV excision rep 99.8 1.6E-18 5.5E-23 119.1 10.4 71 10-88 1-74 (95)
11 2dzi_A Ubiquitin-like protein 99.8 1.2E-18 4E-23 114.7 9.3 77 6-90 4-80 (81)
12 1wgd_A Homocysteine-responsive 99.8 1.2E-18 4.2E-23 118.9 9.2 80 5-91 3-87 (93)
13 2faz_A Ubiquitin-like containi 99.8 2.1E-18 7.4E-23 113.3 10.0 76 8-90 1-77 (78)
14 1uh6_A Ubiquitin-like 5; beta- 99.8 6.7E-19 2.3E-23 124.0 7.5 71 7-85 26-96 (100)
15 1wju_A NEDD8 ultimate buster-1 99.8 1.5E-18 5.1E-23 122.2 9.0 76 8-91 14-93 (100)
16 4eew_A Large proline-rich prot 99.8 1.9E-18 6.4E-23 116.3 8.7 74 5-87 13-86 (88)
17 3dbh_I NEDD8; cell cycle, acti 99.8 1.7E-18 5.8E-23 115.8 8.4 75 6-88 9-83 (88)
18 4fbj_B NEDD8; effector-HOST ta 99.8 1.9E-18 6.7E-23 117.1 8.5 72 10-89 1-72 (88)
19 2hj8_A Interferon-induced 17 k 99.8 1.9E-18 6.4E-23 117.1 8.2 75 8-90 3-77 (88)
20 1wy8_A NP95-like ring finger p 99.8 8E-18 2.7E-22 113.2 11.0 78 6-90 4-82 (89)
21 2bwf_A Ubiquitin-like protein 99.8 3.6E-18 1.2E-22 111.4 9.0 72 10-90 5-76 (77)
22 3mtn_B UBA80, ubcep1, ubiquiti 99.8 3.8E-18 1.3E-22 113.0 9.0 74 8-89 2-75 (85)
23 3n3k_B Ubiquitin; hydrolase, p 99.8 2.7E-18 9.1E-23 114.0 7.9 74 8-89 2-75 (85)
24 1wgg_A Ubiquitin carboxyl-term 99.8 2.4E-18 8.3E-23 119.1 7.9 77 5-91 3-80 (96)
25 1yqb_A Ubiquilin 3; structural 99.7 4.9E-18 1.7E-22 118.2 9.2 80 3-91 16-95 (100)
26 2klc_A Ubiquilin-1; ubiquitin- 99.7 7E-18 2.4E-22 117.5 9.7 78 6-92 22-99 (101)
27 2kan_A Uncharacterized protein 99.7 5.4E-18 1.9E-22 116.8 9.0 76 7-91 13-89 (94)
28 2daf_A FLJ35834 protein; hypot 99.7 4.2E-18 1.4E-22 123.1 8.6 85 6-98 12-98 (118)
29 1ndd_A NEDD8, protein (ubiquit 99.7 6.2E-18 2.1E-22 109.5 8.5 71 10-88 1-71 (76)
30 1wxv_A BAG-family molecular ch 99.7 6.3E-18 2.1E-22 115.0 8.9 78 7-93 5-88 (92)
31 4hcn_B Polyubiquitin, ubiquiti 99.7 4E-18 1.4E-22 117.7 7.9 74 7-88 20-93 (98)
32 1ttn_A DC-UBP, dendritic cell- 99.7 5.5E-18 1.9E-22 118.7 8.6 77 7-91 21-98 (106)
33 3a9j_A Ubiquitin; protein comp 99.7 9.9E-18 3.4E-22 108.5 9.1 72 10-89 1-72 (76)
34 1wh3_A 59 kDa 2'-5'-oligoadeny 99.7 1.2E-17 4E-22 111.8 9.6 77 6-90 4-80 (87)
35 1j8c_A Ubiquitin-like protein 99.7 9.6E-18 3.3E-22 121.4 9.6 79 3-90 26-104 (125)
36 1v5o_A 1700011N24RIK protein; 99.7 7.7E-18 2.6E-22 117.2 8.7 76 7-89 5-84 (102)
37 1wx8_A Riken cDNA 4931431F19; 99.7 6.5E-18 2.2E-22 115.6 7.2 77 6-91 14-90 (96)
38 3k9o_B Ubiquitin, UBB+1; E2-25 99.7 1.6E-17 5.3E-22 113.2 9.1 72 10-89 2-73 (96)
39 1x1m_A Ubiquitin-like protein 99.7 1.8E-17 6.2E-22 116.4 9.7 78 7-92 10-102 (107)
40 1v5t_A 8430435I17RIK protein; 99.7 5.7E-18 1.9E-22 115.5 6.8 76 7-91 5-84 (90)
41 1sif_A Ubiquitin; hydrophobic 99.7 1.4E-17 4.8E-22 112.9 8.1 73 9-89 9-81 (88)
42 1yx5_B Ubiquitin; proteasome, 99.7 2.9E-17 9.8E-22 112.9 9.7 73 10-90 1-73 (98)
43 2uyz_B Small ubiquitin-related 99.7 1.2E-17 4E-22 110.1 7.0 73 8-88 2-74 (79)
44 3vdz_A Ubiquitin-40S ribosomal 99.7 2.4E-17 8.4E-22 116.5 9.0 74 7-88 33-106 (111)
45 1wia_A Hypothetical ubiquitin- 99.7 6.7E-17 2.3E-21 110.5 10.3 73 6-89 4-77 (95)
46 1wx7_A Ubiquilin 3; ubiquitin- 99.7 4E-17 1.4E-21 114.1 9.1 76 5-89 13-88 (106)
47 1wyw_B Ubiquitin-like protein 99.7 3.4E-17 1.2E-21 113.0 7.6 74 7-88 19-92 (97)
48 3m63_B Ubiquitin domain-contai 99.7 6.6E-18 2.3E-22 117.9 4.0 73 7-88 26-98 (101)
49 2kdb_A Homocysteine-responsive 99.7 2.6E-17 8.9E-22 115.1 6.7 73 7-86 21-98 (99)
50 1we6_A Splicing factor, putati 99.7 1.4E-16 4.7E-21 112.3 10.1 76 7-90 25-104 (111)
51 3b1l_X E3 ubiquitin-protein li 99.5 2.1E-18 7.1E-23 112.7 0.0 72 10-89 1-72 (76)
52 1wgh_A Ubiquitin-like 3, HCG-1 99.7 4.4E-16 1.5E-20 112.0 11.6 82 7-94 14-103 (116)
53 2ojr_A Ubiquitin; lanthide-bin 99.7 1.9E-16 6.6E-21 111.6 9.6 75 7-89 33-107 (111)
54 2l7r_A Ubiquitin-like protein 99.7 5.5E-17 1.9E-21 111.2 6.6 72 7-88 17-88 (93)
55 2dzj_A Synaptic glycoprotein S 99.7 1.5E-16 5.2E-21 108.7 8.4 72 9-87 10-86 (88)
56 1v86_A DNA segment, CHR 7, way 99.7 4.9E-17 1.7E-21 112.1 5.7 75 7-91 15-89 (95)
57 2kd0_A LRR repeats and ubiquit 99.7 1.5E-16 5.3E-21 107.4 7.5 74 8-90 11-84 (85)
58 3u30_A Ubiquitin, linear DI-ub 99.7 4.1E-16 1.4E-20 116.7 10.4 76 6-89 17-92 (172)
59 3rt3_B Ubiquitin-like protein 99.7 2.2E-16 7.4E-21 116.4 8.3 72 10-89 3-76 (159)
60 2kdi_A Ubiquitin, vacuolar pro 99.7 4.7E-16 1.6E-20 110.6 9.6 75 8-90 8-82 (114)
61 3rt3_B Ubiquitin-like protein 99.7 4.3E-16 1.5E-20 114.8 9.5 75 7-89 79-153 (159)
62 3l0w_B Monoubiquitinated proli 99.7 3.5E-16 1.2E-20 118.2 9.3 71 10-88 1-71 (169)
63 1v2y_A 3300001G02RIK protein; 99.7 1.1E-16 3.6E-21 113.4 5.9 74 7-88 5-95 (105)
64 2gow_A HCG-1 protein, ubiquiti 99.7 6.7E-16 2.3E-20 112.3 10.2 80 7-92 15-102 (125)
65 4dbg_A Ranbp-type and C3HC4-ty 99.7 4.9E-16 1.7E-20 110.2 9.0 74 9-89 24-100 (105)
66 1se9_A Ubiquitin family; ubiqu 99.6 1.5E-15 5.2E-20 110.8 11.0 71 6-82 13-89 (126)
67 3b08_A Polyubiquitin-C, ubiqui 99.6 1.1E-15 3.9E-20 110.5 9.3 74 10-91 1-74 (152)
68 1we7_A SF3A1 protein; structur 99.6 1.5E-15 5.3E-20 107.6 9.4 75 7-88 23-106 (115)
69 2fnj_B Transcription elongatio 99.6 3.4E-16 1.2E-20 113.1 5.6 72 10-88 1-80 (118)
70 3q3f_A Ribonuclease/ubiquitin 99.6 9.2E-16 3.2E-20 118.5 8.2 73 9-89 105-177 (189)
71 1t0y_A Tubulin folding cofacto 99.6 2.7E-15 9.1E-20 107.8 9.9 78 8-92 5-90 (122)
72 4ajy_B Transcription elongatio 99.6 6.8E-16 2.3E-20 111.5 6.6 72 10-88 1-80 (118)
73 3u5e_m 60S ribosomal protein L 99.6 5.9E-17 2E-21 117.0 0.0 71 10-88 1-71 (128)
74 3b08_A Polyubiquitin-C, ubiqui 99.6 5.7E-15 2E-19 106.8 9.8 74 8-89 75-148 (152)
75 4b6w_A Tubulin-specific chaper 99.6 1.1E-14 3.9E-19 99.1 9.9 75 9-90 2-85 (86)
76 2kj6_A Tubulin folding cofacto 99.6 5.8E-15 2E-19 102.9 8.5 76 5-87 10-93 (97)
77 2dzm_A FAS-associated factor 1 99.6 5.2E-15 1.8E-19 103.8 8.3 74 7-89 6-81 (100)
78 3shq_A UBLCP1; phosphatase, hy 99.6 3E-15 1E-19 123.3 7.9 76 7-91 3-81 (320)
79 2kjr_A CG11242; UBL, ubiquitin 99.6 7E-15 2.4E-19 102.0 8.3 74 6-86 12-92 (95)
80 1v6e_A Cytoskeleton-associated 99.6 1.6E-14 5.3E-19 99.2 9.4 73 9-88 7-86 (95)
81 3u5c_f 40S ribosomal protein S 99.6 2.4E-16 8.1E-21 117.9 0.0 70 10-87 1-70 (152)
82 3u30_A Ubiquitin, linear DI-ub 99.6 7.9E-15 2.7E-19 109.6 8.1 73 8-88 95-167 (172)
83 1oqy_A HHR23A, UV excision rep 99.5 7.8E-15 2.7E-19 123.1 7.7 78 7-90 5-84 (368)
84 1wf9_A NPL4 family protein; be 99.5 1.1E-14 3.7E-19 102.3 7.0 75 7-90 5-95 (107)
85 3ai5_A Yeast enhanced green fl 99.5 3.5E-14 1.2E-18 116.8 8.8 74 7-88 231-304 (307)
86 2kzr_A Ubiquitin thioesterase 99.5 2.3E-14 7.9E-19 96.6 5.6 76 10-91 1-79 (86)
87 2io1_B Small ubiquitin-related 99.4 9.4E-13 3.2E-17 91.0 8.2 75 5-87 3-78 (94)
88 2xzm_9 RPS31E; ribosome, trans 99.3 7.6E-14 2.6E-18 107.9 0.0 65 10-87 1-66 (189)
89 2io0_B Small ubiquitin-related 99.3 6.4E-12 2.2E-16 86.4 8.9 74 7-88 3-77 (91)
90 3a4r_A Nfatc2-interacting prot 99.3 7.4E-12 2.5E-16 83.6 8.6 75 6-87 4-78 (79)
91 1wjn_A Tubulin-folding protein 99.3 2.1E-11 7.1E-16 83.7 11.1 77 7-89 7-92 (97)
92 1wm3_A Ubiquitin-like protein 99.3 1E-11 3.5E-16 81.3 7.9 69 10-86 2-70 (72)
93 2d07_B Ubiquitin-like protein 99.3 2.1E-11 7.2E-16 83.9 8.4 73 7-87 15-87 (93)
94 1wz0_A Ubiquitin-like protein 99.2 3.7E-11 1.3E-15 84.6 7.6 74 7-88 22-95 (104)
95 2k8h_A Small ubiquitin protein 99.2 2.4E-11 8.3E-16 86.4 6.1 73 7-87 24-96 (110)
96 2eke_C Ubiquitin-like protein 99.2 1.1E-10 3.7E-15 82.6 8.0 72 7-87 29-100 (106)
97 3kyd_D Small ubiquitin-related 98.9 6.4E-09 2.2E-13 74.6 8.7 72 7-86 38-109 (115)
98 3pge_A SUMO-modified prolifera 98.7 9.4E-08 3.2E-12 74.3 8.8 74 7-89 27-101 (200)
99 2pjh_A Protein NPL4, nuclear p 98.7 9.7E-09 3.3E-13 68.8 2.6 73 8-87 3-78 (80)
100 2jxx_A Nfatc2-interacting prot 98.5 6.7E-07 2.3E-11 62.1 8.8 75 6-87 22-96 (97)
101 3tix_A Ubiquitin-like protein 98.5 2.7E-07 9.3E-12 71.8 7.2 73 7-88 55-127 (207)
102 3goe_A DNA repair protein RAD6 98.5 1.1E-06 3.8E-11 59.3 8.8 71 8-86 8-80 (82)
103 4efo_A Serine/threonine-protei 98.3 9.3E-07 3.2E-11 61.2 5.4 52 10-63 13-64 (94)
104 3v7o_A Minor nucleoprotein VP3 98.2 1.2E-07 4.2E-12 74.6 0.0 72 7-87 19-91 (227)
105 3uf8_A Ubiquitin-like protein 98.0 1.4E-05 4.7E-10 61.7 7.6 71 7-86 19-89 (209)
106 2l76_A Nfatc2-interacting prot 97.9 5E-05 1.7E-09 52.7 8.2 72 7-87 19-90 (95)
107 3ix6_A TS, tsase, thymidylate 97.9 1.7E-06 5.8E-11 72.4 0.0 73 6-87 18-91 (360)
108 4da1_A Protein phosphatase 1K, 97.7 4E-06 1.4E-10 69.6 0.0 70 7-85 28-97 (389)
109 2bps_A YUKD protein; ubiquitin 97.5 0.00015 5E-09 48.8 4.8 69 9-85 4-79 (81)
110 3qx1_A FAS-associated factor 1 97.4 0.0016 5.5E-08 43.0 9.2 77 5-87 3-81 (84)
111 2al3_A TUG long isoform; TUG U 97.3 0.00049 1.7E-08 47.2 6.1 76 8-91 8-84 (90)
112 2kc2_A Talin-1, F1; FERM, adhe 97.1 0.00057 2E-08 49.5 4.4 70 11-88 13-121 (128)
113 2dzk_A UBX domain-containing p 97.0 0.0064 2.2E-07 42.3 9.0 83 7-94 11-95 (109)
114 1wj4_A KIAA0794 protein; UBX d 96.2 0.017 5.8E-07 41.1 7.3 75 7-87 41-117 (124)
115 2cr5_A Reproduction 8; UBX dom 96.0 0.028 9.5E-07 38.9 7.2 75 7-88 21-97 (109)
116 3rpf_C Molybdopterin convertin 95.4 0.12 4.1E-06 32.9 8.0 65 10-86 1-67 (74)
117 2l32_A Small archaeal modifier 95.3 0.064 2.2E-06 34.8 6.4 59 10-86 1-60 (74)
118 1s3s_G P47 protein; AAA ATPase 95.2 0.088 3E-06 37.4 7.5 72 6-83 49-122 (127)
119 4e71_A Plexin-B2, MM1; transme 95.1 0.23 7.7E-06 35.0 9.3 80 7-86 9-108 (111)
120 3jyu_A Ubiquitin carboxyl-term 94.3 0.22 7.4E-06 38.6 8.3 62 24-91 155-222 (231)
121 2r2o_A Plexin-B1; effector dom 94.1 0.29 1E-05 35.7 8.1 80 7-86 22-126 (138)
122 1ryj_A Unknown; beta/alpha pro 94.0 0.42 1.4E-05 30.1 8.0 60 9-86 4-64 (70)
123 4a3p_A Ubiquitin carboxyl-term 94.0 0.13 4.5E-06 39.4 6.4 62 23-90 142-209 (217)
124 1oey_A P67-PHOX, neutrophil cy 94.0 0.16 5.5E-06 34.0 6.0 48 8-60 4-51 (83)
125 3kuz_A Plexin-C1; structural g 93.4 0.55 1.9E-05 33.8 8.4 80 8-87 18-125 (126)
126 3ivf_A Talin-1; FERM domain, c 93.2 0.32 1.1E-05 39.5 7.9 83 9-100 3-95 (371)
127 1wgk_A Riken cDNA 2900073H19 p 93.2 1.1 3.8E-05 31.1 9.6 74 8-87 10-102 (114)
128 3h6n_A Plexin-D1; structural g 93.2 1.3 4.5E-05 31.8 10.1 78 9-86 4-102 (127)
129 1vjk_A Molybdopterin convertin 93.1 0.52 1.8E-05 31.4 7.6 67 8-86 8-91 (98)
130 4e74_A Plexin-A4; RBD, structu 92.9 0.75 2.6E-05 32.6 8.4 79 8-86 12-112 (117)
131 2daj_A KIAA0977 protein, COBL- 91.0 0.43 1.5E-05 32.4 5.0 76 7-90 8-83 (91)
132 2kvr_A Ubiquitin carboxyl-term 90.7 0.16 5.4E-06 36.4 2.8 34 23-58 58-91 (130)
133 2qjl_A URM1, ubiquitin-related 88.9 2.2 7.7E-05 28.3 7.4 33 10-42 2-43 (99)
134 1tyg_B YJBS; alpha beta barrel 87.4 1 3.5E-05 30.0 4.9 62 7-86 18-81 (87)
135 3onh_A Ubiquitin-activating en 87.1 1.2 4E-05 32.1 5.3 63 24-89 9-79 (127)
136 2c7h_A RBBP6, retinoblastoma-b 86.8 2.8 9.6E-05 28.1 6.7 75 8-93 5-84 (86)
137 2k9x_A Tburm1, uncharacterized 85.0 0.55 1.9E-05 32.6 2.6 71 8-87 3-96 (110)
138 4eut_A Serine/threonine-protei 84.9 3.9 0.00013 32.5 8.0 48 12-61 313-360 (396)
139 2kmm_A Guanosine-3',5'-BIS(dip 84.8 1.7 6E-05 26.7 4.7 60 10-86 1-61 (73)
140 1vd2_A Protein kinase C, IOTA 83.9 5.7 0.0002 26.6 7.2 52 5-60 2-54 (89)
141 1fm0_D Molybdopterin convertin 82.7 4.2 0.00014 25.4 6.0 51 23-86 19-74 (81)
142 3po0_A Small archaeal modifier 82.2 6.9 0.00024 25.0 7.0 53 23-87 20-83 (89)
143 1wgy_A RAP guanine nucleotide 81.0 6.8 0.00023 27.0 6.9 75 7-89 7-86 (104)
144 3hm6_X Plexin-B1; structural g 80.9 7.2 0.00025 34.8 8.6 80 8-87 256-360 (644)
145 2ylm_A Ubiquitin carboxyl-term 80.8 1 3.6E-05 38.8 3.2 32 23-56 38-69 (530)
146 3ig3_A Plxna3 protein; plexin 78.2 11 0.00038 33.5 8.9 80 8-87 232-333 (627)
147 2q5w_D Molybdopterin convertin 77.4 2.9 9.8E-05 26.0 3.8 51 23-86 18-70 (77)
148 3qa8_A MGC80376 protein; kinas 74.8 9.3 0.00032 33.9 7.6 41 23-65 324-364 (676)
149 2hj1_A Hypothetical protein; s 74.2 13 0.00044 25.0 6.6 69 8-86 11-83 (97)
150 3dwg_C 9.5 kDa culture filtrat 73.9 15 0.00051 23.6 6.8 55 24-87 20-87 (93)
151 1wgr_A Growth factor receptor- 72.1 15 0.00051 25.0 6.6 59 6-67 6-71 (100)
152 2k5p_A THis protein, thiamine- 71.5 2.2 7.7E-05 27.5 2.2 51 24-86 9-63 (78)
153 3hvz_A Uncharacterized protein 69.3 8.4 0.00029 24.8 4.6 60 11-87 7-67 (78)
154 1y8x_B Ubiquitin-activating en 68.9 2.1 7.2E-05 29.2 1.6 63 23-86 7-81 (98)
155 2l52_A Methanosarcina acetivor 68.6 8.2 0.00028 25.5 4.6 69 9-86 3-92 (99)
156 2juo_A GA-binding protein alph 68.6 17 0.00058 24.4 6.0 67 25-98 7-76 (89)
157 1rws_A Hypothetical protein PF 67.8 2.9 9.8E-05 26.5 2.1 45 24-84 24-68 (77)
158 1f0z_A THis protein; ubiquitin 67.5 10 0.00036 23.0 4.6 51 24-86 9-60 (66)
159 2kl0_A Putative thiamin biosyn 65.6 10 0.00036 23.9 4.4 50 24-86 9-59 (73)
160 1ip9_A BEM1 protein; ubiquitin 64.4 25 0.00084 23.4 6.2 47 8-60 11-58 (85)
161 2v1y_A Phosphatidylinositol-4, 64.2 9.7 0.00033 26.4 4.4 35 7-42 17-51 (108)
162 2cu3_A Unknown function protei 60.6 17 0.00059 21.8 4.7 50 24-86 8-58 (64)
163 2g1e_A Hypothetical protein TA 60.2 29 0.00098 21.7 6.6 55 24-86 18-83 (90)
164 2dhz_A RAP guanine nucleotide 55.8 28 0.00094 24.5 5.6 76 6-89 6-92 (120)
165 3ivf_A Talin-1; FERM domain, c 46.4 1.1E+02 0.0037 24.3 9.2 73 8-88 84-166 (371)
166 1q1o_A Cell division control p 44.1 17 0.00058 24.7 2.8 40 8-49 4-49 (98)
167 2c5l_C Phosphoinositide-specif 43.8 79 0.0027 22.0 6.4 50 5-56 3-61 (117)
168 4gdk_A Ubiquitin-like protein 42.0 58 0.002 21.4 5.2 52 7-60 3-57 (91)
169 3ge3_C Toluene-4-monooxygenase 41.1 76 0.0026 21.0 9.5 71 10-87 4-82 (84)
170 2ylm_A Ubiquitin carboxyl-term 40.8 1.7E+02 0.0058 24.9 9.4 58 8-67 338-404 (530)
171 3qij_A Protein 4.1; cytoskelet 39.3 29 0.00098 27.1 3.9 48 8-58 16-64 (296)
172 2lkz_A RNA-binding protein 5; 38.1 43 0.0015 21.5 4.0 44 1-57 1-45 (95)
173 1pqs_A Cell division control p 37.7 20 0.00069 23.1 2.3 25 23-49 4-28 (77)
174 1ef1_A Moesin; membrane, FERM 37.5 35 0.0012 26.1 4.1 67 9-84 1-73 (294)
175 2eel_A Cell death activator CI 36.4 63 0.0021 21.6 4.7 35 31-67 28-64 (91)
176 1j0g_A Hypothetical protein 18 36.3 93 0.0032 20.6 7.0 62 16-84 18-81 (92)
177 3r8s_T 50S ribosomal protein L 35.7 74 0.0025 21.1 5.0 39 23-63 30-69 (93)
178 2bt6_A Adrenodoxin 1; rutheniu 34.3 51 0.0017 21.5 4.0 30 6-36 3-32 (108)
179 2aff_B MKI67 FHA domain intera 34.1 12 0.00043 21.9 0.7 18 100-117 26-43 (44)
180 1h4r_A Merlin; FERM, neurofibr 32.3 50 0.0017 25.5 4.2 69 7-84 20-93 (314)
181 3au4_A Myosin-X; protein-prote 32.3 75 0.0026 26.8 5.6 48 8-58 215-264 (555)
182 2i1j_A Moesin; FERM, coiled-co 31.6 1.7E+02 0.0057 25.2 7.8 68 8-84 3-76 (575)
183 4gmv_A RAS-associated and plec 29.6 1.1E+02 0.0037 24.2 5.8 71 10-88 32-113 (281)
184 3hui_A Ferredoxin; cytochrome 29.5 85 0.0029 21.6 4.6 32 4-36 16-47 (126)
185 3hk0_A Growth factor receptor- 28.1 1.2E+02 0.004 23.5 5.7 42 11-55 10-51 (256)
186 4a6q_A Histone deacetylase com 27.9 40 0.0014 24.4 2.7 63 24-90 57-139 (143)
187 1f2r_I Inhibitor of caspase-ac 26.0 99 0.0034 21.0 4.3 50 31-89 37-90 (100)
188 2y5c_A Adrenodoxin-like protei 25.9 92 0.0032 20.3 4.2 28 8-36 4-31 (109)
189 2nvu_B Maltose binding protein 25.8 1.3E+02 0.0044 26.5 6.2 60 23-87 714-789 (805)
190 3tve_T 50S ribosomal protein L 25.6 1E+02 0.0035 20.3 4.3 38 23-62 24-62 (92)
191 1jq4_A Methane monooxygenase c 25.3 93 0.0032 19.7 4.0 29 8-37 3-31 (98)
192 1v8c_A MOAD related protein; r 25.0 1.4E+02 0.0046 21.6 5.2 55 24-87 17-81 (168)
193 3pvl_A Myosin VIIA isoform 1; 25.0 1.1E+02 0.0037 26.8 5.5 47 8-57 262-309 (655)
194 2nnz_A Hypothetical protein; b 24.4 36 0.0012 24.6 1.9 36 3-40 23-61 (153)
195 2bn8_A CEDA, cell division act 23.9 13 0.00046 24.3 -0.4 15 111-125 65-79 (87)
196 2wlb_A ETP1-FD, electron trans 22.4 1.3E+02 0.0045 19.1 4.4 28 8-36 2-29 (103)
197 1wmh_B Partitioning defective- 21.5 1.8E+02 0.0061 19.1 4.8 49 7-59 4-54 (86)
198 2bb6_A TCII, TC II, transcobal 21.2 3.6E+02 0.012 22.5 8.1 70 10-86 319-409 (414)
199 2y3a_A Phosphatidylinositol-4, 21.1 1.3E+02 0.0043 28.4 5.3 68 7-79 49-127 (1092)
200 2dnf_A Doublecortin domain-con 20.8 1.7E+02 0.0059 19.5 4.8 54 24-90 31-88 (108)
201 2i1s_A Hypothetical protein; m 20.5 1.1E+02 0.0038 22.2 4.0 43 8-52 7-51 (188)
No 1
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.80 E-value=2.8e-19 Score=125.02 Aligned_cols=75 Identities=19% Similarity=0.332 Sum_probs=66.2
Q ss_pred CCceEEEEEeCCCCCcEEE--EecCCCcHHHHHHHH-HhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCC-CCCC
Q 032671 7 SESVEITVKTIGPAPPSRL--SVSSPIKVRDLRKLI-ATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQL-SNGD 82 (136)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~v--~v~~~~TV~eLK~~I-a~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I-~dG~ 82 (136)
.++|+|+||+.+|+. +.+ +++++.||++||++| ++ ..|+|+++|||||+|+.|+|+.+ |++|+| ++|+
T Consensus 17 ~~~m~I~VKtl~g~~-~~i~v~v~~~~TV~~lK~~I~~~--~~gip~~~QrLi~~Gk~L~D~~t-----L~dy~I~~~g~ 88 (98)
T 4a20_A 17 NAAVHLTLKKIQAPK-FSIEHDFSPSDTILQIKQHLISE--EKASHISEIKLLLKGKVLHDNLF-----LSDLKVTPANS 88 (98)
T ss_dssp -CCEEEEEEECSSSC-EEEEEEECTTCBHHHHHHHHHHT--TSCSCGGGEEEEETTEEECTTCB-----GGGSCCBTTBC
T ss_pred CCCEEEEEEcCCCCE-EEEEEecCCCChHHHHHHHHHHH--hcCCChhhEEEEECCEECcCcCC-----HHHcCcCCCCC
Confidence 578999999999975 665 666999999999999 77 78999999999999999999888 999999 9999
Q ss_pred EEEEEec
Q 032671 83 SVIAAVK 89 (136)
Q Consensus 83 tIlv~~~ 89 (136)
+|++++.
T Consensus 89 ti~lmvs 95 (98)
T 4a20_A 89 TITVMIK 95 (98)
T ss_dssp EEEEEEC
T ss_pred EEEEEEe
Confidence 9955543
No 2
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.80 E-value=2.5e-19 Score=119.38 Aligned_cols=76 Identities=21% Similarity=0.371 Sum_probs=67.7
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccC---CCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE
Q 032671 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSA---NHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV 84 (136)
Q Consensus 8 ~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~---~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI 84 (136)
.+|+|+||+.+++. +.+++++++||.+||++|++ . +|+|+++|||+|+|+.|+|+.+ |++|||++|++|
T Consensus 4 ~~m~i~vk~~~g~~-~~~~v~~~~TV~~lK~~i~~--~~~~~gip~~~qrLi~~Gk~L~D~~t-----L~~~~i~~g~~i 75 (85)
T 2wyq_A 4 MAVTITLKTLQQQT-FKIRMEPDETVKVLKEKIEA--EKGRDAFPVAGQKLIYAGKILSDDVP-----IRDYRIDEKNFV 75 (85)
T ss_dssp CCEEEEEEETTSCE-EEEEECTTSBHHHHHHHHHH--HHCTTTCCGGGEEEEETTEECCTTSB-----GGGGCCCTTSEE
T ss_pred ceEEEEEEECCCCE-EEEEECCCCCHHHHHHHHHh--hccccCCCHHHeEEEECCEECcCCCC-----HHHcCCCCCCEE
Confidence 57999999998865 88999999999999999998 6 8999999999999999998888 999999999999
Q ss_pred EEEecCC
Q 032671 85 IAAVKPK 91 (136)
Q Consensus 85 lv~~~p~ 91 (136)
++...++
T Consensus 76 ~l~~~~~ 82 (85)
T 2wyq_A 76 VVMVTKT 82 (85)
T ss_dssp EEEEC--
T ss_pred EEEEcCC
Confidence 5555443
No 3
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.80 E-value=1.4e-19 Score=126.05 Aligned_cols=72 Identities=17% Similarity=0.137 Sum_probs=66.9
Q ss_pred CCCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE
Q 032671 5 EISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV 84 (136)
Q Consensus 5 e~~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI 84 (136)
..++.|+|+||+..|++ +.++++++.||++||++|++ +.|+|+++|||+|.|++|+|+.+ |++|+|++|++|
T Consensus 17 ~~~~mIqI~Vk~~~Gkk-~~v~v~p~DTI~~LK~~I~~--k~Gip~~qQrLif~Gk~LkD~~T-----L~dY~I~dgstL 88 (93)
T 3plu_A 17 RGSHMIEVVVNDRLGKK-VRVKCLGEDSVGDFKKVLSL--QIGTQPNKIVLQKGGSVLKDHIS-----LEDYEVHDQTNL 88 (93)
T ss_dssp ---CEEEEEEECTTSCE-EEEEEETTSBHHHHHHHHHH--HHTCCGGGEEEEETTEECCTTSB-----TGGGTCCTTCEE
T ss_pred CCCceEEEEEECCCCCE-EEEEECCcCHHHHHHHHHHH--HhCCCHHHEEEEeCCEEccCcCC-----HHHcCCCCCCEE
Confidence 34688999999999977 89999999999999999999 99999999999999999999988 999999999999
No 4
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.79 E-value=4.2e-19 Score=117.13 Aligned_cols=73 Identities=21% Similarity=0.202 Sum_probs=67.8
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 032671 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAA 87 (136)
Q Consensus 8 ~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~ 87 (136)
..|+|+||+.+|+. +.+++++++||.+||++|++ .+|+|+++|||+|+|+.|+|+.+ |++|||++|++|++.
T Consensus 3 ~~m~i~Vk~~~g~~-~~~~v~~~~tV~~lK~~i~~--~~gip~~~qrL~~~G~~L~d~~t-----L~~~~i~~~~~l~l~ 74 (79)
T 3phx_B 3 EPLSILVRNNKGRS-STYEVRLTQTVAHLKQQVSG--LEGVQDDLFWLTFEGKPLEDQLP-----LGEYGLKPLSTVFMN 74 (79)
T ss_dssp CCEEEEEECTTSCE-EEEEECTTSBHHHHHHHHHH--HHTCCGGGEEEEETTEECCTTSB-----GGGGTCCTTCEEEEE
T ss_pred CCEEEEEEeCCCCE-EEEEECCcChHHHHHHHHHh--hcCCCHHHEEEEECCEECCCCCc-----HHHCCCCCCCEEEEE
Confidence 67999999999876 88999999999999999998 99999999999999999999888 999999999999554
Q ss_pred e
Q 032671 88 V 88 (136)
Q Consensus 88 ~ 88 (136)
.
T Consensus 75 ~ 75 (79)
T 3phx_B 75 L 75 (79)
T ss_dssp E
T ss_pred E
Confidence 3
No 5
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.79 E-value=5.1e-19 Score=119.54 Aligned_cols=76 Identities=24% Similarity=0.458 Sum_probs=68.5
Q ss_pred CCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEE
Q 032671 6 ISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVI 85 (136)
Q Consensus 6 ~~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIl 85 (136)
++.+|+|+||+.+++. +.++|++++||.+||++|++ .+++|+++|||+|+|+.|+|+.+ |.+|+| +|++|+
T Consensus 2 ~~~~m~i~Vk~~~g~~-~~~~v~~~~tV~~lK~~i~~--~~gip~~~qrLi~~Gk~L~d~~t-----L~~~~i-~g~~i~ 72 (90)
T 4dwf_A 2 EPDSLEVLVKTLDSQT-RTFIVGAQMNVKEFKEHIAA--SVSIPSEKQRLIYQGRVLQDDKK-----LQEYNV-GGKVIH 72 (90)
T ss_dssp CCCEEEEEEEETTCCE-EEEEEETTCBHHHHHHHHHH--HHTCCGGGEEEEETTEECCTTSB-----GGGGTC-TTEEEE
T ss_pred CCcEEEEEEEcCCCCE-EEEEECCCCCHHHHHHHHHH--HhCCCHHHEEEEECCeECCCCCC-----HHHcCC-CCcEEE
Confidence 4578999999998876 88999999999999999999 89999999999999999999888 999999 899995
Q ss_pred EEecC
Q 032671 86 AAVKP 90 (136)
Q Consensus 86 v~~~p 90 (136)
++..+
T Consensus 73 l~~~~ 77 (90)
T 4dwf_A 73 LVERA 77 (90)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 44443
No 6
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.79 E-value=2.4e-19 Score=122.87 Aligned_cols=76 Identities=18% Similarity=0.322 Sum_probs=68.4
Q ss_pred ceEEEEEeCCCCCcEEEEec--CCCcHHHHHHHH-HhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCC-CCCCEE
Q 032671 9 SVEITVKTIGPAPPSRLSVS--SPIKVRDLRKLI-ATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQL-SNGDSV 84 (136)
Q Consensus 9 ~m~I~VKt~~~~~~~~v~v~--~~~TV~eLK~~I-a~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I-~dG~tI 84 (136)
+|+|+||+..++. +.++++ ++.||.+||++| ++ ..|+|+++|||||+||.|+|+.+ |++|+| ++|++|
T Consensus 1 mmqI~VKtl~g~~-~~i~v~v~~~~TV~~lK~~I~~~--~~gip~~~QrLi~~Gk~L~D~~t-----L~~y~I~~~~stl 72 (87)
T 2lxa_A 1 MVHLTLKKIQAPK-FSIEHDFSPSDTILQIKQHLISE--EKASHISEIKLLLKGKVLHDNLF-----LSDLKVTPANSTI 72 (87)
T ss_dssp CCEEEEEECSSSC-EECCEECCTTCBHHHHHHHHHHT--TSCSSSTTEEEEETTEECCTTCB-----HHHHCCCGGGCEE
T ss_pred CEEEEEEcCCCCE-EEEEEcCCCCCcHHHHHHHHHHH--hcCCChHHEEEEECCEECcCcCC-----HHHcCCCCCCCEE
Confidence 4899999999976 777654 999999999999 88 88999999999999999999988 999999 699999
Q ss_pred EEEecCCC
Q 032671 85 IAAVKPKP 92 (136)
Q Consensus 85 lv~~~p~~ 92 (136)
.|...|.-
T Consensus 73 ~v~~~~~~ 80 (87)
T 2lxa_A 73 TVMIKPNL 80 (87)
T ss_dssp EEEECCCC
T ss_pred EEEcCCCc
Confidence 88887753
No 7
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.78 E-value=2.7e-19 Score=125.69 Aligned_cols=75 Identities=21% Similarity=0.333 Sum_probs=65.7
Q ss_pred ceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE-E
Q 032671 9 SVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA-A 87 (136)
Q Consensus 9 ~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv-~ 87 (136)
+|+|+||+.+|+. +.++|++++||.+||++|++ .+|+|+++|||+|+|+.|+|+.+ |.+|||++|++|++ .
T Consensus 1 mm~I~Vk~~~g~~-~~l~v~~~~TV~~LK~~I~~--~~gip~~~QrLi~~Gk~L~D~~t-----L~~~~i~~g~~i~lv~ 72 (106)
T 3m62_B 1 MVSLTFKNFKKEK-VPLDLEPSNTILETKTKLAQ--SISCEESQIKLIYSGKVLQDSKT-----VSECGLKDGDQVVFMV 72 (106)
T ss_dssp --CEEEECTTCCE-EEECCCTTSBHHHHHHHHHH--TTTSCGGGCEEEETTEECCTTSB-----TTTTTCCTTCEEEEEC
T ss_pred CEEEEEEeCCCCE-EEEEECCCCcHHHHHHHHHH--HHCCChhhEEEEECCEECCCcCC-----HHHcCCCCCCEEEEEE
Confidence 3899999998876 88999999999999999999 99999999999999999999888 99999999999944 4
Q ss_pred ecCC
Q 032671 88 VKPK 91 (136)
Q Consensus 88 ~~p~ 91 (136)
..|+
T Consensus 73 ~~~~ 76 (106)
T 3m62_B 73 SQKK 76 (106)
T ss_dssp CC--
T ss_pred cCCC
Confidence 4444
No 8
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.78 E-value=8e-19 Score=119.26 Aligned_cols=77 Identities=19% Similarity=0.276 Sum_probs=70.2
Q ss_pred CCCCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCE
Q 032671 4 GEISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDS 83 (136)
Q Consensus 4 ~e~~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~t 83 (136)
++....|+|+||+.+|+. +.+++++++||.+||++|++ .+|+|+++|||+|+|+.|+|+.+ |.+|||++|++
T Consensus 12 ~~~~~~m~i~Vk~~~g~~-~~l~v~~~~TV~~LK~~I~~--~~gip~~~qrL~~~Gk~L~D~~t-----L~~~gi~~g~~ 83 (91)
T 3v6c_B 12 LVPRGSMQIFVNTLTGTH-ITLEVEPSDTIENVKAKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIQKEST 83 (91)
T ss_dssp CCCCCSEEEEEECTTSCE-EEEEECTTCBHHHHHHHHHH--HHCCCGGGCEEEETTEECCTTCB-----TGGGTCCTTCE
T ss_pred CCCCCeEEEEEEeCCCCE-EEEEECCCCCHHHHHHHHHh--hhCCChhhEEEEECCeECCCcCc-----HHHCCCCCCCE
Confidence 345678999999998866 88999999999999999999 99999999999999999999888 99999999999
Q ss_pred EEEEe
Q 032671 84 VIAAV 88 (136)
Q Consensus 84 Ilv~~ 88 (136)
|++..
T Consensus 84 i~l~~ 88 (91)
T 3v6c_B 84 LHLVL 88 (91)
T ss_dssp EEEEC
T ss_pred EEEEE
Confidence 96554
No 9
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.78 E-value=4.6e-19 Score=119.94 Aligned_cols=75 Identities=16% Similarity=0.241 Sum_probs=69.2
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCee-cCCCCCCCCCCccccCCCCCCEEEE
Q 032671 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKV-LDDTQDDDDRDDVYLQLSNGDSVIA 86 (136)
Q Consensus 8 ~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~-L~D~~t~d~~~L~~~~I~dG~tIlv 86 (136)
.-|+|+||+..|+. +.+++++++||.+||++|++ .+|+|+++|||+|+|+. |+|+.+ |++|||++|++|++
T Consensus 9 ~~~~i~vk~l~g~~-~~l~v~~~~TV~~LK~~I~~--~~gip~~~QrLi~~Gk~lL~D~~t-----L~~y~I~~gs~i~l 80 (84)
T 2kk8_A 9 SHMKFLVENLNGSS-FELEVDYRDTLLVVKQKIER--SQHIPVSKQTLIVDGIVILREDLT-----VEQCQIVPTSDIQL 80 (84)
T ss_dssp CCEEEEEEETTSCE-EEEEECTTSBHHHHHHHHHH--HHTCCGGGEEEEETTEECCCSSSB-----HHHHTCCTTSCEEE
T ss_pred CceEEEEEecCCcE-EEEEECCCChHHHHHHHHHH--HHCcChHHEEEEECCEEecCCcCC-----HHHcCCCCCCEEEE
Confidence 56999999999976 89999999999999999999 99999999999999999 998888 99999999999976
Q ss_pred EecC
Q 032671 87 AVKP 90 (136)
Q Consensus 87 ~~~p 90 (136)
...|
T Consensus 81 v~~p 84 (84)
T 2kk8_A 81 EVSS 84 (84)
T ss_dssp EECC
T ss_pred EEcC
Confidence 6654
No 10
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.78 E-value=1.6e-18 Score=119.06 Aligned_cols=71 Identities=20% Similarity=0.446 Sum_probs=65.4
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccC---CCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032671 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSA---NHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA 86 (136)
Q Consensus 10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~---~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv 86 (136)
|+|+||+..++. +.+++++++||.+||++|++ . +|+|+++|||+|+|+.|+|+.+ |++|||++|++|++
T Consensus 1 M~I~Vk~~~g~~-~~~~v~~~~TV~~LK~~I~~--~~~~~gip~~~qrLi~~Gk~L~D~~t-----L~~ygI~~g~~i~l 72 (95)
T 1uel_A 1 MQVTLKTLQQQT-FKIDIDPEETVKALKEKIES--EKGKDAFPVAGQKLIYAGKILNDDTA-----LKEYKIDEKNFVVV 72 (95)
T ss_dssp CEEEEEETTCCE-EEEECCTTSBHHHHHHHHHH--HHCTTTCCTTTEEEEETTEECCTTSB-----GGGGTCCSSSEEEE
T ss_pred CEEEEEeCCCCE-EEEEECCCCHHHHHHHHHHh--hcccCCCChhhEEEEECCEECCCcCc-----HHHCCCCCCCEEEE
Confidence 789999998865 88999999999999999998 7 8999999999999999998888 99999999999955
Q ss_pred Ee
Q 032671 87 AV 88 (136)
Q Consensus 87 ~~ 88 (136)
..
T Consensus 73 ~~ 74 (95)
T 1uel_A 73 MV 74 (95)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 11
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.2e-18 Score=114.74 Aligned_cols=77 Identities=26% Similarity=0.397 Sum_probs=69.8
Q ss_pred CCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEE
Q 032671 6 ISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVI 85 (136)
Q Consensus 6 ~~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIl 85 (136)
++++|+|+||+.+++. +.+++++++||.+||++|++ .+++|+++|||+|+|+.|.|+.+ |.+|||++|++|+
T Consensus 4 ~~~~m~i~vk~~~g~~-~~~~v~~~~tV~~LK~~i~~--~~~i~~~~qrL~~~gk~L~d~~t-----L~~~~i~~g~~i~ 75 (81)
T 2dzi_A 4 GSSGMQLTVKALQGRE-CSLQVPEDELVSTLKQLVSE--KLNVPVRQQRLLFKGKALADGKR-----LSDYSIGPNSKLN 75 (81)
T ss_dssp SSSSEEEEEEETTSCE-EEEEECSSCBHHHHHHHHHH--HTCCCTTTCEEEETTEECCTTSB-----GGGGTCCSSBCCE
T ss_pred CCCcEEEEEEeCCCCE-EEEEECCCCcHHHHHHHHHH--HHCcCHHHEEEEECCeECCCCCc-----HHHcCCCCCCEEE
Confidence 4578999999988864 88999999999999999999 99999999999999999998888 9999999999997
Q ss_pred EEecC
Q 032671 86 AAVKP 90 (136)
Q Consensus 86 v~~~p 90 (136)
+...+
T Consensus 76 l~~~~ 80 (81)
T 2dzi_A 76 LVVKP 80 (81)
T ss_dssp EECCC
T ss_pred EEEeC
Confidence 66543
No 12
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.77 E-value=1.2e-18 Score=118.95 Aligned_cols=80 Identities=23% Similarity=0.172 Sum_probs=69.3
Q ss_pred CCCCceEEEEEeCCCCC-cEEEEecCCCcHHHHHHHHHhccCC--CCCCCceEEEecCeecCCCCCCCCCCcccc--CCC
Q 032671 5 EISESVEITVKTIGPAP-PSRLSVSSPIKVRDLRKLIATSSAN--HLPIENLRLVFRGKVLDDTQDDDDRDDVYL--QLS 79 (136)
Q Consensus 5 e~~~~m~I~VKt~~~~~-~~~v~v~~~~TV~eLK~~Ia~~~~~--gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~--~I~ 79 (136)
++...|+|+||+.++.. .+.+++++++||.+||++|++ .+ ++|+++|||||+|+.|+|+.+ |++| +|+
T Consensus 3 ~~~~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~--~~~~~i~~~~QrLi~~Gk~L~D~~t-----L~~~~~~i~ 75 (93)
T 1wgd_A 3 SGSSGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSR--VYPERPRPEDQRLIYSGKLLLDHQC-----LRDLLPKQE 75 (93)
T ss_dssp CCSCCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHH--HSTTCCCTTTCEEEETTEECCSSSC-----HHHHSCSSS
T ss_pred CCCcEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHH--HhcCCCChHHeEEEECCEECcCcCC-----HHHHhcCCC
Confidence 45678999999998863 366777799999999999998 77 999999999999999999888 9999 999
Q ss_pred CCCEEEEEecCC
Q 032671 80 NGDSVIAAVKPK 91 (136)
Q Consensus 80 dG~tIlv~~~p~ 91 (136)
+|++|+++..+.
T Consensus 76 ~~~~i~lv~~~~ 87 (93)
T 1wgd_A 76 KRHVLHLVCNVK 87 (93)
T ss_dssp CSEEEEEECCCC
T ss_pred CCCEEEEEeCCC
Confidence 999996555443
No 13
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.77 E-value=2.1e-18 Score=113.29 Aligned_cols=76 Identities=25% Similarity=0.327 Sum_probs=67.6
Q ss_pred CceEEEEEeCCCCCcEEEE-ecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032671 8 ESVEITVKTIGPAPPSRLS-VSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA 86 (136)
Q Consensus 8 ~~m~I~VKt~~~~~~~~v~-v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv 86 (136)
+.|+|+||+..|+..+.++ +++++||.+||++|++ .+|+|+++|||+|+|+.|.|+.+ |++|||++|++|++
T Consensus 1 g~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~--~~gip~~~qrL~~~g~~L~d~~t-----L~~~~i~~g~~i~l 73 (78)
T 2faz_A 1 GSMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQE--LFHVEPGLQRLFYRGKQMEDGHT-----LFDYEVRLNDTIQL 73 (78)
T ss_dssp -CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHH--HHCCCGGGEEEEETTEECCTTCB-----TTTTTCCTTCEEEE
T ss_pred CcEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHH--HHCcChhhEEEEECCEECCCCCC-----HHHcCCCCCCEEEE
Confidence 3699999999887623798 9999999999999999 99999999999999999998888 99999999999966
Q ss_pred EecC
Q 032671 87 AVKP 90 (136)
Q Consensus 87 ~~~p 90 (136)
...+
T Consensus 74 ~~r~ 77 (78)
T 2faz_A 74 LVRQ 77 (78)
T ss_dssp EECC
T ss_pred EEeC
Confidence 5543
No 14
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.77 E-value=6.7e-19 Score=123.96 Aligned_cols=71 Identities=15% Similarity=0.152 Sum_probs=66.6
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEE
Q 032671 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVI 85 (136)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIl 85 (136)
.++|+|+||+..|+. +.++|+++.||++||++|++ +.|+|+++|||+|.|+.|+|+.+ |++|||++|++|.
T Consensus 26 ~~mm~I~VKtl~Gk~-i~lev~p~dTV~~lK~~Ia~--k~Gip~~qQrLi~~Gk~L~D~~T-----L~dygI~~gstlh 96 (100)
T 1uh6_A 26 ATMIEVVCNDRLGKK-VRVKCNTDDTIGDLKKLIAA--QTGTRWNKIVLKKWYTIFKDHVS-----LGDYEIHDGMNLE 96 (100)
T ss_dssp CCEEEEEEECSSSSC-EEEEEETTSBHHHHHHHHHH--HHCCCGGGCEEEETTEECCSSCB-----HHHHTCCTTEEEE
T ss_pred CCeEEEEEECCCCCE-EEEEeCCCCcHHHHHHHHHH--HhCCCHHHEEEEECCEECCCCCC-----HHHcCCCCCCEEE
Confidence 456999999998866 99999999999999999999 99999999999999999999888 9999999999993
No 15
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.77 E-value=1.5e-18 Score=122.18 Aligned_cols=76 Identities=17% Similarity=0.069 Sum_probs=66.8
Q ss_pred CceEEEEEeCC----CCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCE
Q 032671 8 ESVEITVKTIG----PAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDS 83 (136)
Q Consensus 8 ~~m~I~VKt~~----~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~t 83 (136)
+..+|.|+..+ ++. +.++|++++||.+||++|++ +.|+|+++|||||+||+|+|+.+ |++|+|++|++
T Consensus 14 g~ati~V~~~~~~~~~~~-~~lev~~~~TV~~lK~kI~~--k~gip~~qQrLI~~GKiL~D~~T-----L~~y~I~~gst 85 (100)
T 1wju_A 14 GIATIEVFLPPRLKKDRK-NLLETRLHITGRELRSKIAE--TFGLQENYIKIVINKKQLQLGKT-----LEEQGVAHNVK 85 (100)
T ss_dssp CEEEEEEECCTTTCCSSS-EEEEEESSSBHHHHHHHHHH--HTTCCSTTCEEEETTEECCTTSB-----HHHHTCCSSEE
T ss_pred ceEEEEEEecCCCCCCcE-EEEEeCCcCHHHHHHHHHHH--HHCcCHHHeEEEeCCeECCCCCc-----HHHcCCCCCCE
Confidence 44677888777 434 89999999999999999999 99999999999999999999988 99999999999
Q ss_pred EEEEecCC
Q 032671 84 VIAAVKPK 91 (136)
Q Consensus 84 Ilv~~~p~ 91 (136)
|+|+....
T Consensus 86 i~vl~lrg 93 (100)
T 1wju_A 86 AMVLELKQ 93 (100)
T ss_dssp EEEECCCC
T ss_pred EEEEEECC
Confidence 97666444
No 16
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.76 E-value=1.9e-18 Score=116.28 Aligned_cols=74 Identities=26% Similarity=0.482 Sum_probs=66.6
Q ss_pred CCCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE
Q 032671 5 EISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV 84 (136)
Q Consensus 5 e~~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI 84 (136)
+.++.|+|+||+.+++. +.+++++++||.+||++|++ .+|+|+++|||+|+|+.|+|+.+ |++||| +|++|
T Consensus 13 ~~~~~m~i~Vk~~~g~~-~~~~v~~~~tV~~lK~~i~~--~~gip~~~qrLi~~Gk~L~D~~t-----L~~~~i-~g~~i 83 (88)
T 4eew_A 13 EEPDSLEVLVKTLDSQT-RTFIVGAQMNVKEFKEHIAA--SVSIPSEKQRLIYQGRVLQDDKK-----LQEYNV-GGKVI 83 (88)
T ss_dssp --CCEEEEEEEETTSCE-EEEEEETTCBHHHHHHHHHH--HHTCCGGGEEEEETTEECCTTSB-----GGGGTC-TTEEE
T ss_pred cCCCeEEEEEEcCCCCE-EEEEECCCCCHHHHHHHHHH--HhCCCHHHEEEEECCEECCCCCc-----HHHcCC-CCcEE
Confidence 34678999999998876 88999999999999999999 89999999999999999999888 999999 89999
Q ss_pred EEE
Q 032671 85 IAA 87 (136)
Q Consensus 85 lv~ 87 (136)
++.
T Consensus 84 ~lv 86 (88)
T 4eew_A 84 HLV 86 (88)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
No 17
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.76 E-value=1.7e-18 Score=115.79 Aligned_cols=75 Identities=19% Similarity=0.344 Sum_probs=68.9
Q ss_pred CCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEE
Q 032671 6 ISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVI 85 (136)
Q Consensus 6 ~~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIl 85 (136)
...+|+|+||+.+++. +.+++++++||.+||++|++ .+++|+++|||+|+|+.|+|+.+ |.+|+|++|++|+
T Consensus 9 ~~~~m~i~vk~~~g~~-~~~~v~~~~tV~~lK~~i~~--~~gip~~~qrL~~~G~~L~d~~t-----L~~~~i~~~~~i~ 80 (88)
T 3dbh_I 9 SGGSMLIKVKTLTGKE-IEIDIEPTDKVERIKERVEE--KEGIPPQQQRLIYSGKQMNDEKT-----AADYKILGGSVLH 80 (88)
T ss_dssp CCCCEEEEEECTTSCE-EEEEECTTCBHHHHHHHHHH--HHCCCGGGCCEEETTEECCTTSB-----GGGGTCCTTCEEE
T ss_pred CCCcEEEEEEcCCCCE-EEEEECCCCCHHHHHHHHHH--HHCcCHHHEEEEECCeECCCCCc-----HHHcCCCCCCEEE
Confidence 3567999999998866 89999999999999999999 89999999999999999999888 9999999999996
Q ss_pred EEe
Q 032671 86 AAV 88 (136)
Q Consensus 86 v~~ 88 (136)
+..
T Consensus 81 l~~ 83 (88)
T 3dbh_I 81 LVL 83 (88)
T ss_dssp ECC
T ss_pred EEE
Confidence 554
No 18
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.76 E-value=1.9e-18 Score=117.13 Aligned_cols=72 Identities=18% Similarity=0.356 Sum_probs=66.5
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEec
Q 032671 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAVK 89 (136)
Q Consensus 10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~~~ 89 (136)
|+|+||+.+++. +.+++++++||.+||++|++ .+++|+++|||+|+|+.|+|+.+ |++|+|++|++|++...
T Consensus 1 M~I~Vk~~~g~~-~~l~v~~~~TV~~LK~~I~~--~~gip~~~qrLi~~Gk~L~D~~t-----L~~~~i~~g~~l~l~~r 72 (88)
T 4fbj_B 1 MLIKVKTLTGKE-IEIDIEPTDKVERIKERVEE--KEGIPPQQQRLIYSGKQMNDEKT-----AADYKILGGSVLHLVLA 72 (88)
T ss_dssp CEEEEEETTCCE-EEEECCTTCBHHHHHHHHHH--HHCCCGGGCEEEETTEECCTTSB-----TTTTTCCTTCEEEEECB
T ss_pred CEEEEEcCCCCE-EEEEECCCCCHHHHHHHHHH--HHCcChhHEEEEECCeECCCCCc-----HHHcCCCCCCEEEEEEE
Confidence 789999999876 89999999999999999999 99999999999999999999888 99999999999955543
No 19
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.76 E-value=1.9e-18 Score=117.06 Aligned_cols=75 Identities=20% Similarity=0.198 Sum_probs=68.0
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 032671 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAA 87 (136)
Q Consensus 8 ~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~ 87 (136)
++|+|+||+..|+. +.+++++++||.+||++|++ .+|+|+++|||+|+|+.|+|+.+ |++|||++|++|++.
T Consensus 3 ~~m~I~Vk~~~g~~-~~~~v~~~~TV~~LK~~I~~--~~gip~~~qrL~~~Gk~L~D~~t-----L~~~~I~~g~~i~l~ 74 (88)
T 2hj8_A 3 EPLSILVRNNKGRS-STYEVRLTQTVAHLKQQVSG--LEGVQDDLFWLTFEGKPLEDQLP-----LGEYGLKPLSTVFMN 74 (88)
T ss_dssp CEEEEEEEETTSCE-EEEEEESSSBHHHHHHHHHH--HTCSCTTTEEEESSSSCCCTTSB-----HHHHHCSTTCEEEEE
T ss_pred ccEEEEEECCCCCE-EEEEECCCCcHHHHHHHHHH--HhCCChhHEEEEECCEECCCCCc-----HHHcCCCCCCEEEEE
Confidence 57999999998855 88999999999999999999 99999999999999999998888 999999999999655
Q ss_pred ecC
Q 032671 88 VKP 90 (136)
Q Consensus 88 ~~p 90 (136)
..+
T Consensus 75 ~~~ 77 (88)
T 2hj8_A 75 LRL 77 (88)
T ss_dssp EC-
T ss_pred EEc
Confidence 543
No 20
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.76 E-value=8e-18 Score=113.23 Aligned_cols=78 Identities=24% Similarity=0.298 Sum_probs=69.5
Q ss_pred CCCceEEEEEeCCCCCcEEE-EecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE
Q 032671 6 ISESVEITVKTIGPAPPSRL-SVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV 84 (136)
Q Consensus 6 ~~~~m~I~VKt~~~~~~~~v-~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI 84 (136)
++..|+|+||+..++..+.+ ++++++||.+||++|++ .+++|+++|||+|+|+.|.|+.+ |.+|+|++|++|
T Consensus 4 ~~~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~--~~gip~~~qrL~~~gk~L~d~~t-----L~~~~i~~g~~i 76 (89)
T 1wy8_A 4 GSSGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWA--LFDVRPECQRLFYRGKQLENGYT-----LFDYDVGLNDII 76 (89)
T ss_dssp CSSCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHH--HSCCCTTTEEEEETTEECCSSSB-----HHHHTCCTTCEE
T ss_pred CCCcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHH--HHCcChhhEEEEECCeECCCCCC-----HHHCCCCCCCEE
Confidence 45789999999988434889 59999999999999999 99999999999999999998888 999999999999
Q ss_pred EEEecC
Q 032671 85 IAAVKP 90 (136)
Q Consensus 85 lv~~~p 90 (136)
++...+
T Consensus 77 ~l~~~~ 82 (89)
T 1wy8_A 77 QLLVRP 82 (89)
T ss_dssp EEEECC
T ss_pred EEEEeC
Confidence 655543
No 21
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.76 E-value=3.6e-18 Score=111.42 Aligned_cols=72 Identities=28% Similarity=0.473 Sum_probs=65.7
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEec
Q 032671 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAVK 89 (136)
Q Consensus 10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~~~ 89 (136)
|+|+||+ +++. +.+++++++||.+||++|++ .+|+|+++|||+|+|+.|.|+.+ |++|||++|++|++...
T Consensus 5 m~i~vk~-~g~~-~~~~v~~~~tV~~LK~~i~~--~~~i~~~~qrL~~~gk~L~d~~t-----L~~~~i~~g~~i~l~~~ 75 (77)
T 2bwf_A 5 LNIHIKS-GQDK-WEVNVAPESTVLQFKEAINK--ANGIPVANQRLIYSGKILKDDQT-----VESYHIQDGHSVHLVKS 75 (77)
T ss_dssp EEEEEEE-TTEE-EEEEECTTCBHHHHHHHHHH--HHCCCGGGEEEEETTEECCTTSB-----TGGGTCCTTCEEEEEEC
T ss_pred EEEEEEE-CCEE-EEEEECCCCcHHHHHHHHHH--HhCCCHHHEEEEECCeEcCCCCC-----HHHcCCCCCCEEEEEEc
Confidence 8999999 6654 88999999999999999999 99999999999999999998888 99999999999976654
Q ss_pred C
Q 032671 90 P 90 (136)
Q Consensus 90 p 90 (136)
+
T Consensus 76 ~ 76 (77)
T 2bwf_A 76 Q 76 (77)
T ss_dssp C
T ss_pred C
Confidence 4
No 22
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.75 E-value=3.8e-18 Score=113.02 Aligned_cols=74 Identities=20% Similarity=0.339 Sum_probs=67.8
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 032671 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAA 87 (136)
Q Consensus 8 ~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~ 87 (136)
++|+|+||+..+.. +.+++++++||.+||++|++ .+++|+++|||+|+|+.|.|+.+ |.+|+|++|++|++.
T Consensus 2 s~m~i~vk~~~g~~-~~~~v~~~~tV~~lK~~i~~--~~~i~~~~qrL~~~g~~L~d~~t-----L~~~~i~~~~~l~l~ 73 (85)
T 3mtn_B 2 SHMQIFVKTLTGKT-ITLEVEPSDTIENVKAKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIQKWSTLFLL 73 (85)
T ss_dssp -CEEEEEECTTSCE-EEEEECTTCBHHHHHHHHHH--HHCCCGGGCEEEETTEECCTTSB-----TGGGTCCTTCEEEEE
T ss_pred CeEEEEEEcCCCCE-EEEEECCCCCHHHHHHHHHH--HHCcChHHEEEEECCEECCCCCC-----HHHcCCCCCCEEEEE
Confidence 67999999998865 88999999999999999999 99999999999999999999888 999999999999665
Q ss_pred ec
Q 032671 88 VK 89 (136)
Q Consensus 88 ~~ 89 (136)
..
T Consensus 74 ~r 75 (85)
T 3mtn_B 74 LR 75 (85)
T ss_dssp CC
T ss_pred EE
Confidence 44
No 23
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.75 E-value=2.7e-18 Score=113.96 Aligned_cols=74 Identities=23% Similarity=0.338 Sum_probs=66.8
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 032671 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAA 87 (136)
Q Consensus 8 ~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~ 87 (136)
++|+|+||+.++.. +.+++++++||.+||++|++ .+++|+++|||+|+|+.|+|+.+ |++|+|++|++|++.
T Consensus 2 s~m~i~vk~~~g~~-~~~~v~~~~tV~~lK~~i~~--~~~ip~~~qrL~~~g~~L~d~~t-----L~~~~i~~~~~i~l~ 73 (85)
T 3n3k_B 2 SHMRIVVKTLMGRT-IILEVEPSDTIENVKAKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIHNHSALYLL 73 (85)
T ss_dssp --CEEEEECGGGCE-EEEECCTTCBHHHHHHHHHH--HHCCCGGGEEEEETBEECCTTCB-----TTTTTCCTTCEEEEE
T ss_pred CeEEEEEEeCCCCE-EEEEECCCCcHHHHHHHHHH--HHCCCHHHEEEEECCeECCCCCC-----HHHCCCCCCCEEEEE
Confidence 57999999998865 88999999999999999999 99999999999999999999888 999999999999655
Q ss_pred ec
Q 032671 88 VK 89 (136)
Q Consensus 88 ~~ 89 (136)
..
T Consensus 74 ~r 75 (85)
T 3n3k_B 74 LK 75 (85)
T ss_dssp EC
T ss_pred Ee
Confidence 54
No 24
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.75 E-value=2.4e-18 Score=119.11 Aligned_cols=77 Identities=14% Similarity=0.127 Sum_probs=68.1
Q ss_pred CCCCceEEEEEeCCCCCcE-EEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCE
Q 032671 5 EISESVEITVKTIGPAPPS-RLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDS 83 (136)
Q Consensus 5 e~~~~m~I~VKt~~~~~~~-~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~t 83 (136)
..+++|+|+||+. ++ .+ .++++++.||.+||++|++ .+|+|+++|||+|+|+.|+|+ + |++|||++|++
T Consensus 3 ~~~~~m~i~Vk~~-g~-~~~~l~v~~~~TV~~lK~~I~~--~tgip~~~QkLi~~Gk~L~D~-t-----L~~~~I~~g~~ 72 (96)
T 1wgg_A 3 SGSSGYSVTVKWG-KE-KFEGVELNTDEPPMVFKAQLFA--LTGVQPARQKVMVKGGTLKDD-D-----WGNIKMKNGMT 72 (96)
T ss_dssp SCCCEEEEEEEET-TE-EEEEEEEESSSCHHHHHHHHHH--HTCCCTTTSCCEETTEECCSS-C-----CCSCCCCSSCE
T ss_pred CCCcEEEEEEEEC-CE-EEEEEEECCCCcHHHHHHHHHH--HHCcCHHHeEEEECCcCCCCC-C-----HHHCCCCCCCE
Confidence 3457899999974 43 38 5999999999999999999 999999999999999999988 8 99999999999
Q ss_pred EEEEecCC
Q 032671 84 VIAAVKPK 91 (136)
Q Consensus 84 Ilv~~~p~ 91 (136)
|++++.+.
T Consensus 73 i~l~~~~~ 80 (96)
T 1wgg_A 73 VLMMGSAD 80 (96)
T ss_dssp EECCCCCC
T ss_pred EEEEecch
Confidence 97776554
No 25
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.75 E-value=4.9e-18 Score=118.23 Aligned_cols=80 Identities=23% Similarity=0.304 Sum_probs=70.9
Q ss_pred CCCCCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCC
Q 032671 3 MGEISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGD 82 (136)
Q Consensus 3 ~~e~~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~ 82 (136)
|-..+.+|+|+||+.+++ +.+++++++||.+||++|++ .+++|+++|||+|+|+.|+|+.+ |++|||++|+
T Consensus 16 ~~~~~~~m~I~Vk~~~g~--~~l~v~~~~TV~~LK~~I~~--~~gip~~~QrLi~~Gk~L~D~~t-----L~~ygI~~gs 86 (100)
T 1yqb_A 16 PRGSPHLIKVTVKTPKDK--EDFSVTDTCTIQQLKEEISQ--RFKAHPDQLVLIFAGKILKDPDS-----LAQCGVRDGL 86 (100)
T ss_dssp CSCCTTEEEEEEECSSCE--EEEEEETTCBHHHHHHHHHH--HHTCCGGGEEEEETTEECCTTSB-----HHHHTCCTTC
T ss_pred CCCCCCeEEEEEEcCCCc--EEEEECCCCcHHHHHHHHHH--HHCcChhhEEEEECCEECCCcCc-----HHHCCCCCCC
Confidence 344578899999999884 68999999999999999999 99999999999999999998888 9999999999
Q ss_pred EEEEEecCC
Q 032671 83 SVIAAVKPK 91 (136)
Q Consensus 83 tIlv~~~p~ 91 (136)
+|++.....
T Consensus 87 tI~l~~r~~ 95 (100)
T 1yqb_A 87 TVHLVIKRQ 95 (100)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEcCC
Confidence 996655443
No 26
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.75 E-value=7e-18 Score=117.54 Aligned_cols=78 Identities=22% Similarity=0.309 Sum_probs=68.7
Q ss_pred CCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEE
Q 032671 6 ISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVI 85 (136)
Q Consensus 6 ~~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIl 85 (136)
+...|+|+||+. ++. +.+++++++||.+||++|++ .+|+|+++|||+|+|+.|+|+.+ |.+|||++|++|+
T Consensus 22 ~~~~m~I~Vk~~-g~~-~~l~v~~~~TV~~LK~~I~~--~~gip~~~qrLi~~Gk~L~D~~t-----L~~~gI~~g~~I~ 92 (101)
T 2klc_A 22 HPKIMKVTVKTP-KEK-EEFAVPENSSVQQFKEEISK--RFKSHTDQLVLIFAGKILKDQDT-----LSQHGIHDGLTVH 92 (101)
T ss_dssp -CCCEEEEEECS-SCE-EEEEECSCCCHHHHHHHHHH--HHTCCGGGEEEEETTEEECTTCC-----TGGGTCCTTCEEE
T ss_pred CCCeEEEEEEeC-CcE-EEEEECCCCCHHHHHHHHHH--HHCcChhhEEEEECCEECCCcCc-----HHHcCCCCCCEEE
Confidence 357899999998 544 88999999999999999999 99999999999999999998888 9999999999996
Q ss_pred EEecCCC
Q 032671 86 AAVKPKP 92 (136)
Q Consensus 86 v~~~p~~ 92 (136)
+...+++
T Consensus 93 l~~~~~~ 99 (101)
T 2klc_A 93 LVIKTQN 99 (101)
T ss_dssp EEECCSS
T ss_pred EEEcCCC
Confidence 6655443
No 27
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.75 E-value=5.4e-18 Score=116.82 Aligned_cols=76 Identities=18% Similarity=0.267 Sum_probs=68.6
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCC-CCCCCCCccccCCCCCCEEE
Q 032671 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDT-QDDDDRDDVYLQLSNGDSVI 85 (136)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~-~t~d~~~L~~~~I~dG~tIl 85 (136)
...|+|+||+.++ . +.++|++++||.+||++|++ .+|+|+++|||+|+|+.|+|+ .+ |++|||++|++|+
T Consensus 13 ~~~~~I~Vk~~~~-~-~~l~v~~~~TV~~LK~~I~~--~~gip~~~QrLi~~Gk~L~D~~~t-----L~~ygI~~gstl~ 83 (94)
T 2kan_A 13 VRKIHVTVKFPSK-Q-FTVEVDRTETVSSLKDKIHI--VENTPIKRMQLYYSGIELADDYRN-----LNEYGITEFSEIV 83 (94)
T ss_dssp SCCEEEEEECSSC-E-EEEEECTTCBHHHHHHHHHH--HSSSCTTTEEEEETTEEECCTTSB-----HHHHTCCTTEEEE
T ss_pred CCCEEEEEEcCCc-E-EEEEECCCCcHHHHHHHHHH--HHCcCHHHEEEEECCEECCCCccc-----HHHCCCCCCCEEE
Confidence 5779999999877 4 88999999999999999999 999999999999999999988 78 9999999999996
Q ss_pred EEecCC
Q 032671 86 AAVKPK 91 (136)
Q Consensus 86 v~~~p~ 91 (136)
+...+.
T Consensus 84 lv~r~~ 89 (94)
T 2kan_A 84 VFLKSI 89 (94)
T ss_dssp EEECCC
T ss_pred EEEeCC
Confidence 555443
No 28
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=4.2e-18 Score=123.07 Aligned_cols=85 Identities=13% Similarity=0.160 Sum_probs=73.9
Q ss_pred CCCceEEEEE-eCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE
Q 032671 6 ISESVEITVK-TIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV 84 (136)
Q Consensus 6 ~~~~m~I~VK-t~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI 84 (136)
....|+|+|+ +..+.. +.+++++++||++||++++. .+++|+++|||||+||.|+|+.+ |.+|||++|+||
T Consensus 12 ~~~~itvkv~l~~~~~k-~tv~v~~d~TV~dLKe~ls~--~~~iP~e~qrLIy~GKiLKD~eT-----L~~~gIk~g~TI 83 (118)
T 2daf_A 12 EDSLATVKVVLIPVGQE-IVIPFKVDTILKYLKDHFSH--LLGIPHSVLQIRYSGKILKNNET-----LVQHGVKPQEIV 83 (118)
T ss_dssp CSSCEEEEEEETTTCCE-EEEEECSSSCSHHHHHHHHH--HHTCCTTTEEEEETTEEECSSCC-----HHHHSCCSSCEE
T ss_pred cCccEEEEEEEcCCCcE-EEEEeCCCCcHHHHHHHHHh--hhCCChHHEEEEECCeEcCCcch-----HHHcCCCCCCEE
Confidence 3456889988 444544 89999999999999999999 89999999999999999999999 999999999999
Q ss_pred -EEEecCCCCCcccc
Q 032671 85 -IAAVKPKPPPRHLR 98 (136)
Q Consensus 85 -lv~~~p~~~~~~~~ 98 (136)
+++....|-..+++
T Consensus 84 hLvi~s~~p~~~p~~ 98 (118)
T 2daf_A 84 QVEIFSTNPDLYPVR 98 (118)
T ss_dssp EEEEEESCTTTSCCC
T ss_pred EEEEecCCCccCcce
Confidence 77777666666666
No 29
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.74 E-value=6.2e-18 Score=109.46 Aligned_cols=71 Identities=18% Similarity=0.363 Sum_probs=65.6
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEe
Q 032671 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAV 88 (136)
Q Consensus 10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~~ 88 (136)
|+|+||+.+++. +.+++++++||.+||++|++ .+++|+++|||+|+|+.|.|+.+ |++|||++|++|++..
T Consensus 1 M~i~vk~~~g~~-~~~~v~~~~tv~~lK~~i~~--~~~i~~~~q~L~~~g~~L~d~~t-----L~~~~i~~g~~i~l~~ 71 (76)
T 1ndd_A 1 MLIKVKTLTGKE-IEIDIEPTDKVERIKERVEE--KEGIPPQQQRLIYSGKQMNDEKT-----AADYKILGGSVLHLVL 71 (76)
T ss_dssp CEEEEECTTSCE-EEEECCTTCBHHHHHHHHHH--HHCCCGGGEEEEETTEECCTTSB-----GGGGTCCTTCEEEEEE
T ss_pred CEEEEECCCCCE-EEEEECCCChHHHHHHHHHH--HHCcChHHEEEEECCEECCCCCc-----HHHcCCCCCCEEEEEE
Confidence 789999998865 88999999999999999999 99999999999999999998888 9999999999995544
No 30
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.74 E-value=6.3e-18 Score=115.03 Aligned_cols=78 Identities=24% Similarity=0.325 Sum_probs=67.4
Q ss_pred CCceEEEEEeCCCCCcEEEEecCC-----CcHHHHHHHHHhccCCCCCCCceEEEecCeecCC-CCCCCCCCccccCCCC
Q 032671 7 SESVEITVKTIGPAPPSRLSVSSP-----IKVRDLRKLIATSSANHLPIENLRLVFRGKVLDD-TQDDDDRDDVYLQLSN 80 (136)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~v~v~~~-----~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D-~~t~d~~~L~~~~I~d 80 (136)
+++|+|+||+. ++. +.++++++ +||.+||++|++ .+|+|+++|||+|+|+.|+| +.+ |.+|+|++
T Consensus 5 ~~~~~v~Vk~~-~~~-~~i~v~~~~~~~~~TV~~LK~~i~~--~~gip~~~qrL~~~Gk~L~D~~~~-----L~~~~i~~ 75 (92)
T 1wxv_A 5 SSGLTVTVTHS-NEK-HDLHVTSQQGSSEPVVQDLAQVVEE--VIGVPQSFQKLIFKGKSLKEMETP-----LSALGIQD 75 (92)
T ss_dssp CSSEEEEEECS-SSE-EEEEECCCSSSSSCBHHHHHHHHHH--HTCCCTTTCEEEETTEEECCSSSB-----HHHHTCCS
T ss_pred CCeEEEEEEEC-CEE-EEEEECCCcCcccCcHHHHHHHHHH--HHCcCHHHEEEEECCeecCCCccc-----HHHCCCCC
Confidence 46899999995 433 78999995 999999999999 99999999999999999987 446 99999999
Q ss_pred CCEEEEEecCCCC
Q 032671 81 GDSVIAAVKPKPP 93 (136)
Q Consensus 81 G~tIlv~~~p~~~ 93 (136)
|++|+++..+.++
T Consensus 76 g~~i~l~~~~~~~ 88 (92)
T 1wxv_A 76 GCRVMLIGKKNSG 88 (92)
T ss_dssp SEEEEEESCCSCS
T ss_pred CCEEEEEecCCCC
Confidence 9999777665544
No 31
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.74 E-value=4e-18 Score=117.66 Aligned_cols=74 Identities=22% Similarity=0.346 Sum_probs=67.2
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032671 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA 86 (136)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv 86 (136)
+..|+|+||+.+++. +.++|++++||.+||++|++ .+++|+++|||+|+|+.|+|+.+ |.+|+|++|++|++
T Consensus 20 ~~~m~I~Vk~~~g~~-~~l~v~~~~TV~~LK~~I~~--~~gip~~~qrLi~~Gk~L~D~~t-----L~~~~i~~g~~i~l 91 (98)
T 4hcn_B 20 GRPMQIFVKTLTGKT-ITLEVESSDTIDNVKSKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIQKESTLHL 91 (98)
T ss_dssp --CCEEEEEETTCCE-EEEECCTTCBHHHHHHHHHH--HHCCCGGGCEEEETTEECCTTCB-----SGGGTCCTTEEEEE
T ss_pred CCeEEEEEEeCCCCE-EEEEECCCCcHHHHHHHHHH--HhCCChhHEEEEECCEECCCCCc-----HHHCCCCCCCEEEE
Confidence 567999999998876 89999999999999999999 99999999999999999999888 99999999999955
Q ss_pred Ee
Q 032671 87 AV 88 (136)
Q Consensus 87 ~~ 88 (136)
..
T Consensus 92 ~~ 93 (98)
T 4hcn_B 92 VL 93 (98)
T ss_dssp EC
T ss_pred EE
Confidence 44
No 32
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.74 E-value=5.5e-18 Score=118.74 Aligned_cols=77 Identities=18% Similarity=0.212 Sum_probs=68.8
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032671 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA 86 (136)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv 86 (136)
+..|+|+||+.+|+. +.++|++++||.+||++|++ .+|+|+++|||+|+|+.|.|+.+ |.+|||++|++|++
T Consensus 21 ~~~m~I~Vk~~~g~~-~~l~v~~~~TV~~LK~~I~~--~~gip~~~qrLi~~Gk~L~D~~t-----L~~ygI~~g~ti~l 92 (106)
T 1ttn_A 21 GYECQLRLRLSTGKD-LKLVVRSTDTVFHMKRRLHA--AEGVEPGSQRWFFSGRPLTDKMK-----FEELKIPKDYVVQV 92 (106)
T ss_dssp CCSEEEEEEETTTEE-EEEEECTTSHHHHHHHHHHH--TTCCCSTTCEEEETTEECCTTSH-----HHHCCCSSSCEEEE
T ss_pred CCeEEEEEEcCCCCE-EEEEeCCCCcHHHHHHHHHH--HHCcCcccEEEEECCEECCCCCc-----HHHcCCCCCCEEEE
Confidence 356999999998865 88999999999999999999 99999999999999999998888 99999999999954
Q ss_pred Ee-cCC
Q 032671 87 AV-KPK 91 (136)
Q Consensus 87 ~~-~p~ 91 (136)
+. .|.
T Consensus 93 v~~~~~ 98 (106)
T 1ttn_A 93 IVSQPV 98 (106)
T ss_dssp ECCCSS
T ss_pred EEeCCC
Confidence 44 443
No 33
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.74 E-value=9.9e-18 Score=108.50 Aligned_cols=72 Identities=21% Similarity=0.352 Sum_probs=66.2
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEec
Q 032671 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAVK 89 (136)
Q Consensus 10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~~~ 89 (136)
|+|+||+.+++. +.+++++++||.+||++|++ .+++|+++|||+|+|+.|.|+.+ |++|||++|++|++...
T Consensus 1 M~i~vk~~~g~~-~~i~v~~~~tv~~lK~~i~~--~~~i~~~~q~L~~~g~~L~d~~t-----L~~~~i~~g~~i~l~~~ 72 (76)
T 3a9j_A 1 MQIFVKTLTGKT-ITLEVEPSDTIENVKAKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIQRESTLHLVLR 72 (76)
T ss_dssp CEEEEEETTSCE-EEEECCTTCBHHHHHHHHHH--HHCCCGGGEEEEETTEECCTTCB-----TGGGTCCTTCEEEEEEC
T ss_pred CEEEEEcCCCCE-EEEEECCCCcHHHHHHHHHH--HHCcCHHHeEEEECCeECCCCCc-----HHHcCCCCCCEEEEEEe
Confidence 789999998865 88999999999999999999 99999999999999999998877 99999999999966554
No 34
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.74 E-value=1.2e-17 Score=111.83 Aligned_cols=77 Identities=21% Similarity=0.274 Sum_probs=69.6
Q ss_pred CCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEE
Q 032671 6 ISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVI 85 (136)
Q Consensus 6 ~~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIl 85 (136)
....|+|+||+..++. +.+++++++||.+||++|++ .+++|+++|||+|+|+.|.|+.+ |++|+|++|++|+
T Consensus 4 ~~~~m~i~Vk~~~g~~-~~~~v~~~~tV~~lK~~i~~--~~gi~~~~qrL~~~Gk~L~d~~t-----L~~~~i~~g~~i~ 75 (87)
T 1wh3_A 4 GSSGIQVFVKNPDGGS-YAYAINPNSFILGLKQQIED--QQGLPKKQQQLEFQGQVLQDWLG-----LGIYGIQDSDTLI 75 (87)
T ss_dssp CSSSEEEEEEETTTEE-EEEEECSSSBHHHHHHHHHH--HTCCCTTTEEEEETTEECCSSSB-----HHHHTCCTTEEEE
T ss_pred CCCCEEEEEEcCCCCE-EEEEeCCCChHHHHHHHHHH--HhCCChHHEEEEECCEEccCCCC-----HHHCCCCCCCEEE
Confidence 3467999999998865 88999999999999999999 99999999999999999998888 9999999999996
Q ss_pred EEecC
Q 032671 86 AAVKP 90 (136)
Q Consensus 86 v~~~p 90 (136)
+....
T Consensus 76 l~~~~ 80 (87)
T 1wh3_A 76 LSKKK 80 (87)
T ss_dssp EEECS
T ss_pred EEEec
Confidence 65543
No 35
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.74 E-value=9.6e-18 Score=121.40 Aligned_cols=79 Identities=22% Similarity=0.320 Sum_probs=70.3
Q ss_pred CCCCCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCC
Q 032671 3 MGEISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGD 82 (136)
Q Consensus 3 ~~e~~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~ 82 (136)
|.++.++|+|+||+. ++. +.++|+++.||.+||++|++ .+++|+++|||+|+|+.|+|+.+ |.+|||++|+
T Consensus 26 ~~~~~~~m~I~Vk~~-g~~-~~l~v~~~~TV~~LK~~I~~--~~gip~~~QrLi~~Gk~L~D~~t-----L~dygI~~gs 96 (125)
T 1j8c_A 26 APAEPKIIKVTVKTP-KEK-EEFAVPENSSVQQFKEAISK--RFKSQTDQLVLIFAGKILKDQDT-----LIQHGIHDGL 96 (125)
T ss_dssp CCCCCCCEEEEEECS-SCE-EEEEECTTCCHHHHHHHHHH--HHCSCSSSEEEEETTEEESTTSC-----GGGTTCSSSE
T ss_pred ccCCCCcEEEEEEeC-CeE-EEEEECCCCcHHHHHHHHHH--HHCcCcceEEEEECCEEcCCCCC-----HHHcCCCCCC
Confidence 556678899999998 544 88999999999999999999 99999999999999999998888 9999999999
Q ss_pred EEEEEecC
Q 032671 83 SVIAAVKP 90 (136)
Q Consensus 83 tIlv~~~p 90 (136)
+|++...+
T Consensus 97 tI~lv~~~ 104 (125)
T 1j8c_A 97 TVHLVIKR 104 (125)
T ss_dssp EEEEEEC-
T ss_pred EEEEEecc
Confidence 99665543
No 36
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.74 E-value=7.7e-18 Score=117.25 Aligned_cols=76 Identities=24% Similarity=0.306 Sum_probs=67.3
Q ss_pred CCceEEEEEeCCCC---CcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCC-CCCCCCCccccCCCCCC
Q 032671 7 SESVEITVKTIGPA---PPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDT-QDDDDRDDVYLQLSNGD 82 (136)
Q Consensus 7 ~~~m~I~VKt~~~~---~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~-~t~d~~~L~~~~I~dG~ 82 (136)
+..|+|+||+..+. ..+.++|++++||.+||++|++ .+++|+++|||+|+|+.|+|+ .+ |++|+|++|+
T Consensus 5 ~~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~--~~gip~~~qrL~~~gk~L~D~~~t-----L~~ygI~~g~ 77 (102)
T 1v5o_A 5 SSGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCEL--ESGVPAEEAQIVYMEQLLTDDHCS-----LGSYGLKDGD 77 (102)
T ss_dssp SCCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHH--HTCCCGGGBCEEETTEEECCSSSB-----HHHHTCCTTE
T ss_pred CCeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHH--HHCcChHHeEEEECCEECCCCccc-----HHHCCCCCCC
Confidence 46699999997653 4478999999999999999999 999999999999999999877 46 9999999999
Q ss_pred EEEEEec
Q 032671 83 SVIAAVK 89 (136)
Q Consensus 83 tIlv~~~ 89 (136)
+|+++..
T Consensus 78 ~l~l~~~ 84 (102)
T 1v5o_A 78 MVVLLQK 84 (102)
T ss_dssp EEEECBC
T ss_pred EEEEEEC
Confidence 9976654
No 37
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.73 E-value=6.5e-18 Score=115.60 Aligned_cols=77 Identities=25% Similarity=0.326 Sum_probs=68.6
Q ss_pred CCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEE
Q 032671 6 ISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVI 85 (136)
Q Consensus 6 ~~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIl 85 (136)
.+++|+|+||+. ++. +.+++++++||.+||++|++ .+++|+++|||+|+|+.|+|+.+ |.+|+|++|++|+
T Consensus 14 ~~~~m~i~Vk~~-g~~-~~~~v~~~~TV~~LK~~I~~--~~gip~~~qrL~~~Gk~L~D~~t-----L~~~gi~~g~~i~ 84 (96)
T 1wx8_A 14 SSRIIRVSVKTP-QDC-HEFFLAENSNVRRFKKQISK--YLHCNADRLVLIFTGKILRDQDI-----LSQRGILDGSTVH 84 (96)
T ss_dssp CSCEEEEEEECS-SSE-EEEEEETTCCHHHHHHHHHH--HTCSCTTTBCCEETTEECCTTSC-----HHHHTCCTTEEEE
T ss_pred CCCcEEEEEEEC-CeE-EEEEECCCCCHHHHHHHHHH--HhCCCHHHEEEEECCEECCCcCC-----HHHCCCCCCCEEE
Confidence 357799999998 544 88999999999999999999 99999999999999999998888 9999999999996
Q ss_pred EEecCC
Q 032671 86 AAVKPK 91 (136)
Q Consensus 86 v~~~p~ 91 (136)
+...+.
T Consensus 85 l~~~~~ 90 (96)
T 1wx8_A 85 VVVRSH 90 (96)
T ss_dssp CCBCCS
T ss_pred EEEeCC
Confidence 655443
No 38
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.73 E-value=1.6e-17 Score=113.21 Aligned_cols=72 Identities=21% Similarity=0.355 Sum_probs=66.7
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEec
Q 032671 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAVK 89 (136)
Q Consensus 10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~~~ 89 (136)
|+|+||+.++.. +.+++++++||.+||++|++ .+++|+++|||+|+|+.|+|+.+ |.+|+|++|++|++...
T Consensus 2 m~i~vk~~~g~~-~~~~v~~~~TV~~LK~~i~~--~~gip~~~qrL~~~G~~L~d~~t-----L~~~~i~~~~~i~l~~r 73 (96)
T 3k9o_B 2 MQIFVKTLTGKT-ITLEVEPSDTIENVKAKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIQKESTLHLVLR 73 (96)
T ss_dssp CEEEEEETTCCE-EEEECCTTCBHHHHHHHHHH--HHCCCGGGEEEEETTEECCTTSB-----TGGGTCCTTCEEEEEEC
T ss_pred cEEEEEeCCCCE-EEEEECCCCCHHHHHHHHHh--hhCCChhHEEEEECCEECCCCCc-----HHHcCCCCCCEEEEEEE
Confidence 899999998865 88999999999999999999 99999999999999999998888 99999999999965543
No 39
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.73 E-value=1.8e-17 Score=116.37 Aligned_cols=78 Identities=22% Similarity=0.279 Sum_probs=67.3
Q ss_pred CCceEEEEEeCCC---CCcEEEEecC---------CCcHHHHHHHHHhccCC--CCCCCc-eEEEecCeecCCCCCCCCC
Q 032671 7 SESVEITVKTIGP---APPSRLSVSS---------PIKVRDLRKLIATSSAN--HLPIEN-LRLVFRGKVLDDTQDDDDR 71 (136)
Q Consensus 7 ~~~m~I~VKt~~~---~~~~~v~v~~---------~~TV~eLK~~Ia~~~~~--gi~~~~-QRLI~~GK~L~D~~t~d~~ 71 (136)
...|+|+||+.++ .. +.+++++ ++||.+||++|++ .+ ++|+++ |||+|+|+.|+|+.+
T Consensus 10 ~~~~~i~Vk~~~~~~~~~-~~l~v~~~~~~~v~~~~~TV~~LK~~i~~--~~~~gip~~~~qrLi~~Gk~L~D~~t---- 82 (107)
T 1x1m_A 10 LSDWHLAVKLADQPLAPK-SILQLPETELGEYSLGGYSISFLKQLIAG--KLQESVPDPELIDLIYCGRKLKDDQT---- 82 (107)
T ss_dssp CCSCCEEEEETTCTTSCC-EEECCCCCSSCSSCCCCCBHHHHHHHHHH--HCTTTCCCSSSEEEEETTEECCTTCB----
T ss_pred CCceEEEEEeCCCCCccE-EEEEecCccccccCcccCCHHHHHHHHHH--HhccCCChhhcEEEEECCeECCCCCc----
Confidence 4569999999988 55 7888554 5999999999999 88 999999 999999999998888
Q ss_pred CccccCCCCCCEEEEEecCCC
Q 032671 72 DDVYLQLSNGDSVIAAVKPKP 92 (136)
Q Consensus 72 ~L~~~~I~dG~tIlv~~~p~~ 92 (136)
|.+|+|++|++|+++..+.+
T Consensus 83 -L~~y~i~~g~~i~lv~~~~~ 102 (107)
T 1x1m_A 83 -LDFYGIQPGSTVHVLRKSWS 102 (107)
T ss_dssp -HHHHTCCTTCEEEEEESSCC
T ss_pred -HHHcCCCCCCEEEEEeCCCC
Confidence 99999999999965554443
No 40
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.73 E-value=5.7e-18 Score=115.52 Aligned_cols=76 Identities=21% Similarity=0.252 Sum_probs=68.1
Q ss_pred CCceEEEEEeCCCCCcEEE-EecCCCcHHHHHHHHHhccCCCCCCCceEEE---ecCeecCCCCCCCCCCccccCCCCCC
Q 032671 7 SESVEITVKTIGPAPPSRL-SVSSPIKVRDLRKLIATSSANHLPIENLRLV---FRGKVLDDTQDDDDRDDVYLQLSNGD 82 (136)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~v-~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI---~~GK~L~D~~t~d~~~L~~~~I~dG~ 82 (136)
++.|+|+||+ .++. +.+ ++++++||.+||++|++ .+|+|+++|||+ |+|+.|+|+.+ |++|+|++|+
T Consensus 5 ~~~m~i~Vk~-~g~~-~~i~~v~~~~TV~~lK~~I~~--~~gip~~~QkLi~~k~~Gk~L~D~~~-----L~~~~i~~g~ 75 (90)
T 1v5t_A 5 SSGLPIIVKW-GGQE-YSVTTLSEDDTVLDLKQFLKT--LTGVLPERQKLLGLKVKGKPAENDVK-----LGALKLKPNT 75 (90)
T ss_dssp CCSCCEEEEE-TTEE-EEECSCCSSSBHHHHHHHHHH--HTCCCTTTCEEESCEETTEECCTTSB-----HHHHTCCTTE
T ss_pred CceEEEEEEE-CCEE-EEEEEeCCCCCHHHHHHHHHH--HHCcCHHHeEEEeeccCCcCcCCCCC-----HHHcCCCCCC
Confidence 4679999998 4433 789 99999999999999999 999999999999 99999998888 9999999999
Q ss_pred EEEEEecCC
Q 032671 83 SVIAAVKPK 91 (136)
Q Consensus 83 tIlv~~~p~ 91 (136)
+|++++.+.
T Consensus 76 ~l~l~~~~~ 84 (90)
T 1v5t_A 76 KIMMMGTRE 84 (90)
T ss_dssp EEEEECCCS
T ss_pred EEEEEecCc
Confidence 997777654
No 41
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.72 E-value=1.4e-17 Score=112.87 Aligned_cols=73 Identities=16% Similarity=0.333 Sum_probs=66.5
Q ss_pred ceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEe
Q 032671 9 SVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAV 88 (136)
Q Consensus 9 ~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~~ 88 (136)
-|+|+||+.+++. +.+++++++||.+||++|++ .+++|+++|||+|+|+.|+|+.+ |++|||++|++|++..
T Consensus 9 ~~~i~v~~~~G~~-~~l~v~~~~TV~~LK~~I~~--~~gip~~~qrL~~~Gk~L~D~~t-----L~~~gi~~g~~i~l~~ 80 (88)
T 1sif_A 9 GLQLFIKTLTGKT-FTVEMEPSDTIENLKAKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIQKESTLHLVL 80 (88)
T ss_dssp -CEEEEEETTSCE-EEEECCTTSBHHHHHHHHHH--HHCCCGGGCEEEETTEECCTTSB-----SGGGTCCTTCEEEEEC
T ss_pred ceEEEEEeCCCCE-EEEEECCCChHHHHHHHHHH--HHCcChhhEEEEECCEECCCCCc-----HHHcCCCCCCEEEEEE
Confidence 4899999999976 88999999999999999999 99999999999999999998888 9999999999996554
Q ss_pred c
Q 032671 89 K 89 (136)
Q Consensus 89 ~ 89 (136)
.
T Consensus 81 r 81 (88)
T 1sif_A 81 R 81 (88)
T ss_dssp -
T ss_pred e
Confidence 3
No 42
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.72 E-value=2.9e-17 Score=112.90 Aligned_cols=73 Identities=21% Similarity=0.339 Sum_probs=66.6
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEec
Q 032671 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAVK 89 (136)
Q Consensus 10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~~~ 89 (136)
|+|+||+.+++. +.+++++++||.+||++|++ .+++|+++|||+|+|+.|.|+.+ |++|||++|++|++...
T Consensus 1 M~I~Vk~~~g~~-~~~~v~~~~TV~~LK~~I~~--~~gi~~~~qrL~~~Gk~L~D~~t-----L~~~gi~~g~~i~l~~~ 72 (98)
T 1yx5_B 1 MQIFVKTLTGKT-ITLEVEPSDTIENVKAKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIQKESTLHLVLR 72 (98)
T ss_dssp CEEEEEETTSCE-EEEECCTTCBHHHHHHHHHH--HTCCCGGGEEEEETTEECCTTSB-----TGGGTCCTTCEEEEEEC
T ss_pred CEEEEEeCCCCE-EEEEECCCCcHHHHHHHHHH--HHCcChhhEEEEECCEECCCCCC-----HHHcCCCCCCEEEEEEe
Confidence 789999998865 88999999999999999999 99999999999999999998878 99999999999955544
Q ss_pred C
Q 032671 90 P 90 (136)
Q Consensus 90 p 90 (136)
.
T Consensus 73 ~ 73 (98)
T 1yx5_B 73 L 73 (98)
T ss_dssp C
T ss_pred C
Confidence 3
No 43
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.72 E-value=1.2e-17 Score=110.15 Aligned_cols=73 Identities=16% Similarity=0.325 Sum_probs=67.4
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 032671 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAA 87 (136)
Q Consensus 8 ~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~ 87 (136)
+.|+|+||+..++. +.++|.++.||.+||++|++ +.|+|+++|||+|.|+.|.|+.+ |++|+|++|++|.+.
T Consensus 2 ~~m~i~vk~~~g~~-~~~~v~~~~tv~~lk~~i~~--~~gi~~~~qrL~~~G~~L~d~~t-----l~~~~i~~~~~i~l~ 73 (79)
T 2uyz_B 2 EYIKLKVIGQDSSE-IHFKVKMTTHLKKLKESYCQ--RQGVPMNSLRFLFEGQRIADNHT-----PKELGMEEEDVIEVY 73 (79)
T ss_dssp CEEEEEEECTTCCE-EEEEEETTSCTHHHHHHHHH--HHTCCGGGEEEEETTEECCTTCC-----HHHHTCCTTEEEEEE
T ss_pred CeEEEEEECCCCCE-EEEEECCCChHHHHHHHHHH--HHCCCcccEEEEECCEEeCCCCC-----HHHcCCCCCCEEEEE
Confidence 46999999999875 88999999999999999999 99999999999999999999888 999999999999544
Q ss_pred e
Q 032671 88 V 88 (136)
Q Consensus 88 ~ 88 (136)
.
T Consensus 74 ~ 74 (79)
T 2uyz_B 74 Q 74 (79)
T ss_dssp E
T ss_pred E
Confidence 3
No 44
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.72 E-value=2.4e-17 Score=116.52 Aligned_cols=74 Identities=20% Similarity=0.316 Sum_probs=68.1
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032671 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA 86 (136)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv 86 (136)
...|+|+||+..++. +.+++++++||.+||++|++ .+++|+++|||+|+|+.|.|+.+ |.+|+|++|++|++
T Consensus 33 ~~~m~I~Vk~~~G~~-~~l~v~~~~TV~~LK~~I~~--~~gip~~~QrLi~~Gk~L~D~~t-----L~~~gI~~gs~I~l 104 (111)
T 3vdz_A 33 LLAMQIFVKTLTGKT-ITLEVEPSDTIENVKAKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIQKESTLHL 104 (111)
T ss_dssp GGCEEEEEECSSSCE-EEEEECTTCBHHHHHHHHHH--HHCCCGGGEEEEETTEECCTTSB-----TTTTTCCTTCEEEE
T ss_pred CccEEEEEEeCCCCE-EEEEeCCCCCHHHHHHHHHH--HhCCChHHEEEEECCEECCCCCc-----HHHCCCCCCCEEEE
Confidence 457999999998866 88999999999999999999 99999999999999999999888 99999999999955
Q ss_pred Ee
Q 032671 87 AV 88 (136)
Q Consensus 87 ~~ 88 (136)
..
T Consensus 105 ~~ 106 (111)
T 3vdz_A 105 VL 106 (111)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 45
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.71 E-value=6.7e-17 Score=110.49 Aligned_cols=73 Identities=14% Similarity=0.223 Sum_probs=64.8
Q ss_pred CCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCC-CCCCCCCccccCCCCCCEE
Q 032671 6 ISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDT-QDDDDRDDVYLQLSNGDSV 84 (136)
Q Consensus 6 ~~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~-~t~d~~~L~~~~I~dG~tI 84 (136)
+.+.|+|+||+..++. +.++|++++||.+||++|++ .. +++|||+|+|+.|.|+ .+ |.+|||++|++|
T Consensus 4 ~~~~m~i~Vk~~~g~~-~~~~v~~~~TV~~LK~~i~~--~~---~~~qrLi~~Gk~L~D~~~t-----L~~y~i~~g~~i 72 (95)
T 1wia_A 4 GSSGINVRLKFLNDTE-ELAVARPEDTVGTLKSKYFP--GQ---ESQMKLIYQGRLLQDPART-----LSSLNITNNCVI 72 (95)
T ss_dssp CCCSEEEEEEETTTEE-EEEEECSSSBHHHHHHHHSS--ST---TTTCEEEETTEECCCSSCB-----TTTTTCCTTEEE
T ss_pred CCCeEEEEEEeCCCCE-EEEEECCCCcHHHHHHHHHh--hC---cCcEEEEECCEEccCCcCC-----HHHcCCCCCCEE
Confidence 3567999999998865 88999999999999999987 65 9999999999999988 78 999999999999
Q ss_pred EEEec
Q 032671 85 IAAVK 89 (136)
Q Consensus 85 lv~~~ 89 (136)
+++..
T Consensus 73 ~l~~~ 77 (95)
T 1wia_A 73 HCHRS 77 (95)
T ss_dssp EEECC
T ss_pred EEEEC
Confidence 55443
No 46
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=4e-17 Score=114.07 Aligned_cols=76 Identities=24% Similarity=0.334 Sum_probs=68.4
Q ss_pred CCCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE
Q 032671 5 EISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV 84 (136)
Q Consensus 5 e~~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI 84 (136)
+....|+|+||+.+++ +.++|+++.||.+||++|++ .+++++++|||+|+|+.|+|+.+ |.+|+|++|++|
T Consensus 13 ~~~~~m~I~Vk~~~g~--~~l~v~~~~TV~~LK~~I~~--~~gip~~~qrLi~~Gk~L~D~~t-----L~~~gi~~g~~i 83 (106)
T 1wx7_A 13 QDPHLIKVTVKTPKDK--EDFSVTDTCTIQQLKEEISQ--RFKAHPDQLVLIFAGKILKDPDS-----LAQCGVRDGLTV 83 (106)
T ss_dssp CCSSEEEEEEECSSCE--EEEEEETTCCHHHHHHHHHH--HHTCCTTTEEEEETTEECCTTSC-----HHHHTCCTTEEE
T ss_pred CCCceEEEEEEeCCCc--EEEEECCCCcHHHHHHHHHH--HHCcChhhEEEEECCEECCCcCc-----HHHcCCCCCCEE
Confidence 3467799999998874 68999999999999999999 99999999999999999998888 999999999999
Q ss_pred EEEec
Q 032671 85 IAAVK 89 (136)
Q Consensus 85 lv~~~ 89 (136)
++...
T Consensus 84 ~l~~~ 88 (106)
T 1wx7_A 84 HLVIK 88 (106)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 66554
No 47
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.70 E-value=3.4e-17 Score=113.01 Aligned_cols=74 Identities=16% Similarity=0.322 Sum_probs=68.0
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032671 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA 86 (136)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv 86 (136)
+..|+|+||+..++. +.++|.++.||.+||++|++ +.|+|+++|||+|.|+.|.|+.+ |++|+|++|++|.+
T Consensus 19 ~~~m~I~Vk~~~g~~-~~l~v~~~~tv~~lK~~i~~--~~gip~~~qrLif~Gk~L~d~~t-----l~dy~i~~g~~I~l 90 (97)
T 1wyw_B 19 GEYIKLKVIGQDSSE-IHFKVKMTTHLKKLKESYCQ--RQGVPMNSLRFLFEGQRIADNHT-----PKELGMEEEDVIEV 90 (97)
T ss_dssp CCEEEEEEECTTCCE-EEEEEETTSCTHHHHHHHHH--HHTCCGGGEEEEETTEECCTTCC-----HHHHTCCTTCEEEE
T ss_pred CCcEEEEEEeCCCCE-EEEEECCCCcHHHHHHHHHH--HHCCChhhEEEEECCeEcCCCCC-----HHHCCCCCCCEEEE
Confidence 456999999999876 88999999999999999999 99999999999999999999888 99999999999944
Q ss_pred Ee
Q 032671 87 AV 88 (136)
Q Consensus 87 ~~ 88 (136)
..
T Consensus 91 ~~ 92 (97)
T 1wyw_B 91 YQ 92 (97)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 48
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.70 E-value=6.6e-18 Score=117.88 Aligned_cols=73 Identities=29% Similarity=0.473 Sum_probs=63.3
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032671 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA 86 (136)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv 86 (136)
+-.|+|+||+ +++. +.+++++++||.+||++|++ .+|+|+++|||+|+|+.|+|+.+ |++|||++|++|++
T Consensus 26 ~m~i~I~Vk~-~g~~-~~l~v~~~~TV~~LK~~I~~--~~gip~~~QrLi~~Gk~L~D~~t-----L~~~gI~~g~tI~l 96 (101)
T 3m63_B 26 AMSLNIHIKS-GQDK-WEVNVAPESTVLQFKEAINK--ANGIPVANQRLIYSGKILKDDQT-----VESYHIQDGHSVHL 96 (101)
T ss_dssp ---CCEEEEC-SSCC-CCBCCCTTSBHHHHHHHHHH--HHSCCSTTCCEEETTEECCTTSB-----TTTTTCCTTEEEEE
T ss_pred CcEEEEEEEE-CCEE-EEEEeCCCCCHHHHHHHHHH--HHCcChHHEEEEECCEECCCcCc-----HHHCCCCCCCEEEE
Confidence 3458899998 5544 78999999999999999999 99999999999999999999888 99999999999955
Q ss_pred Ee
Q 032671 87 AV 88 (136)
Q Consensus 87 ~~ 88 (136)
+.
T Consensus 97 v~ 98 (101)
T 3m63_B 97 VK 98 (101)
T ss_dssp CC
T ss_pred Ee
Confidence 44
No 49
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.69 E-value=2.6e-17 Score=115.12 Aligned_cols=73 Identities=16% Similarity=0.176 Sum_probs=62.5
Q ss_pred CCceEEEEEeCCCCC-cEEEEecCCCcHHHHHHHHHhccC-CCC-CCCceEEEecCeecCCCCCCCCCCcccc--CCCCC
Q 032671 7 SESVEITVKTIGPAP-PSRLSVSSPIKVRDLRKLIATSSA-NHL-PIENLRLVFRGKVLDDTQDDDDRDDVYL--QLSNG 81 (136)
Q Consensus 7 ~~~m~I~VKt~~~~~-~~~v~v~~~~TV~eLK~~Ia~~~~-~gi-~~~~QRLI~~GK~L~D~~t~d~~~L~~~--~I~dG 81 (136)
...|+|+||+.+++. .+.+++++++||.+||++|++ + .|. |+++|||||+||.|+|+.+ |++| +|++|
T Consensus 21 ~~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~--~~~g~pp~~~QrLIy~Gk~L~D~~t-----L~~y~~~I~~~ 93 (99)
T 2kdb_A 21 GHPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSN--VYPSKPLTKDQRLVYSGRLLPDHLQ-----LKDILRKQDEY 93 (99)
T ss_dssp --CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHH--HSTTCCCTTTCCEEETTEEECTTSB-----THHHHTTTCSE
T ss_pred CCeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHH--HhcCCCChhhEEEEECCEECCCCCC-----HHHHhcCCCCC
Confidence 356999999998873 368899999999999999997 5 344 4699999999999999988 9999 99999
Q ss_pred CEEEE
Q 032671 82 DSVIA 86 (136)
Q Consensus 82 ~tIlv 86 (136)
++|.+
T Consensus 94 ~tihL 98 (99)
T 2kdb_A 94 HMVHL 98 (99)
T ss_dssp EEEEE
T ss_pred CEEEe
Confidence 99943
No 50
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.69 E-value=1.4e-16 Score=112.27 Aligned_cols=76 Identities=17% Similarity=0.221 Sum_probs=68.4
Q ss_pred CCceEEEEEeC---CCCCcEEEEecC-CCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCC
Q 032671 7 SESVEITVKTI---GPAPPSRLSVSS-PIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGD 82 (136)
Q Consensus 7 ~~~m~I~VKt~---~~~~~~~v~v~~-~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~ 82 (136)
.+.|+|+|++. .++. +.+++++ ++||.+||++|++ .+|+|+++|||+|+|+.|+|+.+ |++|+|++|+
T Consensus 25 ~~~i~i~Vk~~~~~~g~~-~~l~v~~l~~TV~~LK~~I~~--~~gip~~~QrL~~~Gk~L~D~~t-----L~~y~I~~g~ 96 (111)
T 1we6_A 25 PGPATIRVSKPNENDGQF-MEITVQSLSENVGSLKEKIAG--EIQIPANKQKLSGKAGFLKDNMS-----LAHYNVGAGE 96 (111)
T ss_dssp CSCEEEEECCTTCSSSCC-EEEEESCSSSBHHHHHHHHHH--HTTCCTTTSEEECSSSBCCTTSB-----TTTTTCSSSC
T ss_pred CCcEEEEEEecccCCCcE-EEEEecCCCCcHHHHHHHHHH--HHCCCHHHeEEEECCEECCCCCc-----HHHCCCCCCC
Confidence 46799999998 6655 8899998 9999999999999 99999999999999999999888 9999999999
Q ss_pred EEEEEecC
Q 032671 83 SVIAAVKP 90 (136)
Q Consensus 83 tIlv~~~p 90 (136)
+|++....
T Consensus 97 ~l~l~~r~ 104 (111)
T 1we6_A 97 ILTLSLRE 104 (111)
T ss_dssp EEEEECSS
T ss_pred EEEEEEEc
Confidence 99665543
No 51
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.51 E-value=2.1e-18 Score=112.67 Aligned_cols=72 Identities=19% Similarity=0.273 Sum_probs=65.7
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEec
Q 032671 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAVK 89 (136)
Q Consensus 10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~~~ 89 (136)
|+|+||+.+++. +.+++++++||.+||++|++ .+|+|+++|||+|+|+.|.|+.+ |++|||++|++|++...
T Consensus 1 M~i~Vk~~~g~~-~~~~v~~~~tV~~lK~~i~~--~~gi~~~~qrL~~~gk~L~d~~t-----L~~~~i~~g~~i~l~~r 72 (76)
T 3b1l_X 1 MIVFVRFNSSYG-FPVEVDSDTSILQLKEVVAK--QQGVPADQLRVIFAGKELPNHLT-----VQNCDLEQQSIVHIVQR 72 (76)
Confidence 789999988865 78999999999999999998 99999999999999999998888 99999999999955443
No 52
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.68 E-value=4.4e-16 Score=112.00 Aligned_cols=82 Identities=15% Similarity=0.229 Sum_probs=66.8
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhcc----CCC--CCCCceEEEecCeecCCCCCCCCCCccccCCCC
Q 032671 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSS----ANH--LPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSN 80 (136)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~----~~g--i~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~d 80 (136)
.+.|+|+||+..|.. +.++|+++.||.+||++|++.. +.+ +|+++|||||.||.|+|+.+ |++|+|+.
T Consensus 14 ~~~m~I~vKtl~G~t-~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~T-----L~~y~I~~ 87 (116)
T 1wgh_A 14 ADMINLRLILVSGKT-KEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVT-----LGALKLPF 87 (116)
T ss_dssp SSSEEEEEECSSSCE-EEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCB-----TTTTTCCS
T ss_pred CCeEEEEEEeCCCCE-EEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCc-----HHHcCCCC
Confidence 577999999999955 9999999999999999999711 225 46999999999999999989 99999998
Q ss_pred CCE--EEEEecCCCCC
Q 032671 81 GDS--VIAAVKPKPPP 94 (136)
Q Consensus 81 G~t--Ilv~~~p~~~~ 94 (136)
|+. |++...+.+|+
T Consensus 88 ~~~~tlhLvlr~~~~~ 103 (116)
T 1wgh_A 88 GKTTVMHLVARETLPE 103 (116)
T ss_dssp SCEEEEEEEECSSCSS
T ss_pred CCceEEEEEccCCCCC
Confidence 864 44444444443
No 53
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.68 E-value=1.9e-16 Score=111.64 Aligned_cols=75 Identities=20% Similarity=0.324 Sum_probs=68.2
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032671 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA 86 (136)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv 86 (136)
..+|+|+||+..++. +.+++++++||.+||++|++ .+++|+++|||+|+|+.|.|+.+ |++|+|++|++|++
T Consensus 33 ~~~m~I~Vk~~~g~~-~~l~v~~~~TV~~LK~~I~~--~~gip~~~qrLi~~Gk~L~D~~t-----L~~~gI~~gs~I~l 104 (111)
T 2ojr_A 33 LLAMQIFVKTLTGKT-ITLEVEPSDTIENVKAKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIQKESTLHL 104 (111)
T ss_dssp SSCEEEEEECSSSCE-EEEEECTTCBHHHHHHHHHH--HHCCCTTTEEEEETTEECCSSCB-----TTTTTCCTTCEEEE
T ss_pred CCeEEEEEEcCCCCE-EEEEeCCCCCHHHHHHHHHH--HHCcCcccEEEEECCEECCCCCc-----HHHcCCCCCCEEEE
Confidence 368999999988865 88999999999999999999 99999999999999999998888 99999999999965
Q ss_pred Eec
Q 032671 87 AVK 89 (136)
Q Consensus 87 ~~~ 89 (136)
...
T Consensus 105 ~~r 107 (111)
T 2ojr_A 105 VLR 107 (111)
T ss_dssp EEC
T ss_pred EEe
Confidence 543
No 54
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.68 E-value=5.5e-17 Score=111.20 Aligned_cols=72 Identities=14% Similarity=0.162 Sum_probs=63.4
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032671 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA 86 (136)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv 86 (136)
...|+|+||+ ++. +.++|++++||.+||++|++ .+++|+++|||+|+|+.|+|+.+ |.+|+|++|++|++
T Consensus 17 ~~~m~I~Vk~--g~~-~~l~v~~~~TV~~LK~~I~~--~~gip~~~qrLi~~Gk~L~D~~t-----L~~y~I~~gstI~l 86 (93)
T 2l7r_A 17 RGSMQLFVRA--QEL-HTFEVTGQETVAQIKAHVAS--LEGIAPEDQVVLLAGAPLEDEAT-----LGQCGVEALTTLEV 86 (93)
T ss_dssp ---CEEEEES--SSE-EEEECCSSCBHHHHHHHHHH--HHTCCGGGCEEEETTEECCTTSB-----HHHHTCCSSCEEEE
T ss_pred CCcEEEEEEC--CCE-EEEEeCCCCcHHHHHHHHHH--HhCcChhHEEEEECCEECCCCCc-----HHHCCCCCCCEEEE
Confidence 4569999999 443 88999999999999999999 99999999999999999998888 99999999999955
Q ss_pred Ee
Q 032671 87 AV 88 (136)
Q Consensus 87 ~~ 88 (136)
..
T Consensus 87 v~ 88 (93)
T 2l7r_A 87 AG 88 (93)
T ss_dssp EC
T ss_pred EE
Confidence 44
No 55
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.5e-16 Score=108.73 Aligned_cols=72 Identities=14% Similarity=0.155 Sum_probs=64.2
Q ss_pred ceEEEEEeCCCCCc-EEE-EecCCCcHHHHHHHHHhccC-CCCCCCceEEEec--CeecCCCCCCCCCCccccCCCCCCE
Q 032671 9 SVEITVKTIGPAPP-SRL-SVSSPIKVRDLRKLIATSSA-NHLPIENLRLVFR--GKVLDDTQDDDDRDDVYLQLSNGDS 83 (136)
Q Consensus 9 ~m~I~VKt~~~~~~-~~v-~v~~~~TV~eLK~~Ia~~~~-~gi~~~~QRLI~~--GK~L~D~~t~d~~~L~~~~I~dG~t 83 (136)
.|+|+||+..++.. ..+ +|++++||.+||++|++ . .++||++|||+|. |+.|+|+.+ |++|||++|++
T Consensus 10 ~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~--~~~~i~~~~QrL~~~~~Gk~L~D~~t-----L~~y~i~~~st 82 (88)
T 2dzj_A 10 HYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTK--THPQWYPARQSLRLDPKGKSLKDEDV-----LQKLPVGTTAT 82 (88)
T ss_dssp CEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHH--HCSSSCTTTCCEESSTTSCCCCTTCB-----TTTSSCCSEEE
T ss_pred EEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHH--HhcCCChHHeEEEecCCCcCcCCCCC-----HHHcCCCCCCE
Confidence 39999999988763 358 99999999999999997 5 7999999999976 999999888 99999999999
Q ss_pred EEEE
Q 032671 84 VIAA 87 (136)
Q Consensus 84 Ilv~ 87 (136)
|+++
T Consensus 83 l~~K 86 (88)
T 2dzj_A 83 LYFR 86 (88)
T ss_dssp EEEC
T ss_pred EEEE
Confidence 9774
No 56
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.67 E-value=4.9e-17 Score=112.07 Aligned_cols=75 Identities=13% Similarity=0.221 Sum_probs=65.1
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032671 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA 86 (136)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv 86 (136)
...|+|+||+. ++ .+.+++++++||.+||++|++ .+++|+++|||+|+|+.| |+.+ |.+|+|++|++|++
T Consensus 15 ~~~~~i~Vk~~-g~-~~~i~v~~~~TV~~LK~~I~~--~tgip~~~QrL~~~Gk~L-dd~t-----L~~~~i~~g~~i~l 84 (95)
T 1v86_A 15 KELVDLKIIWN-KT-KHDVKVPLDSTGSELKQKIHS--ITGLPPAMQKVMYKGLVP-EDKT-----LREIKVTSGAKIMV 84 (95)
T ss_dssp CCCEEEEEEET-TE-EEEEEECTTSBHHHHHHHHHH--HHCSCSTTCCCBSSSBCC-SSSB-----HHHHCCCTTEEEEE
T ss_pred CceEEEEEEEC-CE-EEEEEECCCCcHHHHHHHHHH--HHCcCHHHeEEEECCeeC-CcCc-----HHHCCCCCCCEEEE
Confidence 46699999964 43 378999999999999999999 999999999999999999 4447 99999999999977
Q ss_pred EecCC
Q 032671 87 AVKPK 91 (136)
Q Consensus 87 ~~~p~ 91 (136)
+..+.
T Consensus 85 v~~~~ 89 (95)
T 1v86_A 85 VGSTI 89 (95)
T ss_dssp CCSSC
T ss_pred Eeccc
Confidence 66553
No 57
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.67 E-value=1.5e-16 Score=107.43 Aligned_cols=74 Identities=26% Similarity=0.392 Sum_probs=63.6
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 032671 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAA 87 (136)
Q Consensus 8 ~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~ 87 (136)
+++.+.++. +++. +.+++++++||.+||++|++ .+|+|+++|||+|+|+.|+|+.+ |++|||++|++|++.
T Consensus 11 ~~~~~~~~~-~g~~-~~l~v~~~~TV~~LK~~I~~--~~gip~~~qrL~~~Gk~L~D~~t-----L~~~gi~~g~~l~l~ 81 (85)
T 2kd0_A 11 STIKLTVKF-GGKS-IPLSVSPDCTVKDLKSQLQP--ITNVLPRGQKLIFKGKVLVETST-----LKQSDVGSGAKLMLM 81 (85)
T ss_dssp CCEEEEEEE-TTEE-EEEEECTTSBHHHHHHHHHH--HHCCCTTTCEEEETTEECCTTCB-----TTTTTCCTTEEEEEE
T ss_pred CcEEEEEEE-CCEE-EEEEECCCCcHHHHHHHHHH--HHCcChHHEEEEECCeECCCcCC-----HHHCCCCCCCEEEEE
Confidence 455555544 5544 78999999999999999999 99999999999999999998888 999999999999776
Q ss_pred ecC
Q 032671 88 VKP 90 (136)
Q Consensus 88 ~~p 90 (136)
..|
T Consensus 82 ~s~ 84 (85)
T 2kd0_A 82 ASQ 84 (85)
T ss_dssp CCC
T ss_pred EeC
Confidence 654
No 58
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.66 E-value=4.1e-16 Score=116.70 Aligned_cols=76 Identities=20% Similarity=0.327 Sum_probs=68.3
Q ss_pred CCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEE
Q 032671 6 ISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVI 85 (136)
Q Consensus 6 ~~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIl 85 (136)
....|+|+||+.+++. +.++|++++||.+||++|++ .+|+|+++|||+|+|+.|+|+.+ |.+|||++|++|+
T Consensus 17 ~~~~m~i~Vk~~~g~~-~~l~v~~~~tV~~lK~~I~~--~~gip~~~QrL~~~g~~L~d~~t-----L~~~~i~~~~~l~ 88 (172)
T 3u30_A 17 RGSHMQIFVKTLTGKT-ITLEVEPSDTIENVKAKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIQKESTLH 88 (172)
T ss_dssp --CCEEEEEEETTTEE-EEEEECTTCBHHHHHHHHHH--HHCCCGGGEEEEETTEECCTTCB-----TGGGTCCTTCEEE
T ss_pred CCCcEEEEEEeCCCCE-EEEEECCCCcHHHHHHHHHH--HHCcChHHEEEEECCccccccCC-----HhHcCCcccceee
Confidence 3567999999999866 88999999999999999999 99999999999999999999888 9999999999995
Q ss_pred EEec
Q 032671 86 AAVK 89 (136)
Q Consensus 86 v~~~ 89 (136)
+...
T Consensus 89 l~~~ 92 (172)
T 3u30_A 89 LVLR 92 (172)
T ss_dssp EEEC
T ss_pred eeec
Confidence 5443
No 59
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.66 E-value=2.2e-16 Score=116.36 Aligned_cols=72 Identities=25% Similarity=0.295 Sum_probs=66.9
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEE-e-cCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 032671 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLV-F-RGKVLDDTQDDDDRDDVYLQLSNGDSVIAA 87 (136)
Q Consensus 10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI-~-~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~ 87 (136)
|+|+||+.+++. +.+++++++||.+||++|++ .+|+|+++|||+ | +|+.|+|+.+ |++|||++|++|++.
T Consensus 3 m~i~vk~~~g~~-~~l~v~~~~tV~~lK~~I~~--~~gip~~~QrL~~~~~g~~L~d~~t-----L~~y~i~~~~~l~l~ 74 (159)
T 3rt3_B 3 WDLTVKMLAGNE-FQVSLSSSMSVSELKAQITQ--KIGVHAFQQRLAVHPSGVALQDRVP-----LASQGLGPGSTVLLV 74 (159)
T ss_dssp CEEEEEETTSCE-EEEECCTTCCHHHHHHHHHH--HHCCCGGGEEEEEETTCCBCCTTSC-----GGGGTCCTTCEEEEE
T ss_pred eEEEEEECCCCE-EEEEeCCCCcHHHHHHHHHH--HhCCCHHHEEEEEcCCCCCCCCCCC-----HHHcCCCCCCEEEEE
Confidence 899999999876 89999999999999999999 999999999999 9 7999998888 999999999999665
Q ss_pred ec
Q 032671 88 VK 89 (136)
Q Consensus 88 ~~ 89 (136)
..
T Consensus 75 ~~ 76 (159)
T 3rt3_B 75 VD 76 (159)
T ss_dssp EC
T ss_pred cc
Confidence 55
No 60
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.66 E-value=4.7e-16 Score=110.58 Aligned_cols=75 Identities=19% Similarity=0.296 Sum_probs=68.3
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 032671 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAA 87 (136)
Q Consensus 8 ~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~ 87 (136)
+..+|+||+..++. +.+++++++||.+||++|++ .+++|+++|||+|+|+.|+|+.+ |++|||++|++|++.
T Consensus 8 ~~~~i~vk~l~G~~-~~l~v~~~~TV~~LK~~I~~--~~gip~~~qrLi~~Gk~L~D~~t-----L~~ygI~~gstI~l~ 79 (114)
T 2kdi_A 8 GEFQIFAKTLTGKT-ITLEVESSDTIDNVKSKIQD--KEGIPPDQQRLIWAGKQLEDGRT-----LSDYNIQRESTLHLV 79 (114)
T ss_dssp CCCEEEEEETTCCE-EEEECCTTCBHHHHHHHHHH--HHCCCGGGEEEEETTEECCTTCB-----TTTTTCCSSCEEEEE
T ss_pred CcEEEEEEeCCCcE-EEEEECCCCcHHHHHHHHHH--HHCcChHHEEEEECCEECCCCCc-----HHHCCCCCCCEEEEE
Confidence 46899999999965 88999999999999999999 99999999999999999998888 999999999999555
Q ss_pred ecC
Q 032671 88 VKP 90 (136)
Q Consensus 88 ~~p 90 (136)
...
T Consensus 80 ~~~ 82 (114)
T 2kdi_A 80 LRL 82 (114)
T ss_dssp ECC
T ss_pred EEc
Confidence 543
No 61
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.66 E-value=4.3e-16 Score=114.76 Aligned_cols=75 Identities=20% Similarity=0.211 Sum_probs=68.8
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032671 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA 86 (136)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv 86 (136)
++.|+|+||+..|+. +.++++++.||.+||++|++ .+|+|+++|||+|+|+.|+|+.+ |.+|+|++|++|.+
T Consensus 79 ~~~m~i~vk~~~g~~-~~~~v~~~~tV~~lK~~i~~--~~gip~~~q~L~~~G~~L~d~~t-----L~~y~i~~g~~l~l 150 (159)
T 3rt3_B 79 DEPLSILVRNNKGRS-STYEVRLTQTVAHLKQQVSG--LEGVQDDLFWLTFEGKPLEDQLP-----LGEYGLKPLSTVFM 150 (159)
T ss_dssp CCCEEEEEECTTSCE-EEEEECTTSBHHHHHHHHHH--HHTCCGGGEEEEETTEECCTTSB-----GGGGTCCTTCEEEE
T ss_pred CCcEEEEEECCCCCE-EEEEeCCCCCHHHHHHHHHH--HHCCCHHHEEEEECCeecCCCCC-----HHHcCCCCCCEEEE
Confidence 467999999998876 88999999999999999999 99999999999999999999888 99999999999955
Q ss_pred Eec
Q 032671 87 AVK 89 (136)
Q Consensus 87 ~~~ 89 (136)
...
T Consensus 151 ~~r 153 (159)
T 3rt3_B 151 NLR 153 (159)
T ss_dssp EEC
T ss_pred EEe
Confidence 543
No 62
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.66 E-value=3.5e-16 Score=118.23 Aligned_cols=71 Identities=23% Similarity=0.354 Sum_probs=66.1
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEe
Q 032671 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAV 88 (136)
Q Consensus 10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~~ 88 (136)
|+|+||+.+|+. +.+++++++||.+||++|++ .+|+|+++|||+|+|+.|+|+.+ |++|+|++|++|++..
T Consensus 1 MqI~Vk~~~Gk~-~~l~v~~~~TV~~LK~~I~~--~~gip~~~QrLi~~Gk~L~D~~t-----L~~y~I~~gstI~Lvl 71 (169)
T 3l0w_B 1 MQIFVKTLTGKT-ITLEVESSDTIDNVKSKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIQKESTLHLVL 71 (169)
T ss_dssp CEEEEEETTSCE-EEEECCTTCBHHHHHHHHHH--HHCCCTTTEEEEETTEECCTTSB-----GGGGTCCTTCEEEEEE
T ss_pred CEEEEEeCCCCE-EEEEeCCCCCHHHHHHHHHH--HHCcCHHHEEEEECCccccCcCc-----HHHcCCCCCCEEEEEE
Confidence 799999999866 88999999999999999999 99999999999999999999888 9999999999995444
No 63
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.65 E-value=1.1e-16 Score=113.44 Aligned_cols=74 Identities=23% Similarity=0.214 Sum_probs=64.6
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCC---------------ceEEEecCeecC-CCCCCCC
Q 032671 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIE---------------NLRLVFRGKVLD-DTQDDDD 70 (136)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~---------------~QRLI~~GK~L~-D~~t~d~ 70 (136)
+..|+|+||+.+++. +.|+|++++||.+||++|++ +.++|++ +|||||.|+.|. |+.+
T Consensus 5 ~~~M~I~Vk~l~g~~-~~v~V~~~~TV~dLK~~I~~--~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~t--- 78 (105)
T 1v2y_A 5 SSGMTVRVCKMDGEV-MPVVVVQNATVLDLKKAIQR--YVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKK--- 78 (105)
T ss_dssp CCSEEEEEECSSSCE-EEEEECTTCBHHHHHHHHHH--HHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSB---
T ss_pred CCcEEEEEEecCCCE-EEEEECCCChHHHHHHHHHH--HhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCC---
Confidence 355999999999976 99999999999999999999 8888874 579999999997 4466
Q ss_pred CCccccCCCCCCEE-EEEe
Q 032671 71 RDDVYLQLSNGDSV-IAAV 88 (136)
Q Consensus 71 ~~L~~~~I~dG~tI-lv~~ 88 (136)
|++|||++|++| +|+.
T Consensus 79 --L~dygI~~g~~l~lv~~ 95 (105)
T 1v2y_A 79 --LRDYGIRNRDEVSFIKK 95 (105)
T ss_dssp --HHHHTCCSSEEEEEEEC
T ss_pred --HHHcCCCCCCEEEEEeh
Confidence 999999999999 4443
No 64
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.65 E-value=6.7e-16 Score=112.29 Aligned_cols=80 Identities=14% Similarity=0.207 Sum_probs=65.6
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhcc----CCCC--CCCceEEEecCeecCCCCCCCCCCccccCCCC
Q 032671 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSS----ANHL--PIENLRLVFRGKVLDDTQDDDDRDDVYLQLSN 80 (136)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~----~~gi--~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~d 80 (136)
...|+|+||+..|+. +.++++++.||.+||++|++.. +.++ ++++|||||.||.|+|+.+ |++|+|+.
T Consensus 15 ~~~m~I~vktl~G~~-~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~T-----L~~y~I~~ 88 (125)
T 2gow_A 15 ADMINLRLILVSGKT-KEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVT-----LGALKLPF 88 (125)
T ss_dssp TTCEEEEEECTTSCE-EEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCB-----TGGGCCCT
T ss_pred CCeEEEEEEeCCCCE-EEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCc-----HHHcCCCC
Confidence 356999999998854 9999999999999999998621 3466 5899999999999999988 99999998
Q ss_pred CCE--EEEEecCCC
Q 032671 81 GDS--VIAAVKPKP 92 (136)
Q Consensus 81 G~t--Ilv~~~p~~ 92 (136)
|++ |++...+..
T Consensus 89 ~~~~tlhlv~r~~~ 102 (125)
T 2gow_A 89 GKTTVMHLVARETL 102 (125)
T ss_dssp TSEEEEEEEECSCC
T ss_pred CCceEEEEEecCCC
Confidence 885 444444443
No 65
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.65 E-value=4.9e-16 Score=110.20 Aligned_cols=74 Identities=16% Similarity=0.189 Sum_probs=65.3
Q ss_pred ceEEEEEeCCC-CCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCC-CCCCEE-E
Q 032671 9 SVEITVKTIGP-APPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQL-SNGDSV-I 85 (136)
Q Consensus 9 ~m~I~VKt~~~-~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I-~dG~tI-l 85 (136)
.|+|+|+...+ +.++.+++.++.||.+||++|++ +.|+||++|||+|+|+.++|+.+ |.+||| ++|+++ +
T Consensus 24 ~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~--k~Gipp~~QRli~ggkll~D~~T-----L~~ygI~~~G~t~hL 96 (105)
T 4dbg_A 24 RLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFL--DYGFPPVLQQWVIGQRLARDQET-----LHSHGVRQNGDSAYL 96 (105)
T ss_dssp EEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHH--HHCCCGGGEEEEETTEEECTTCB-----TGGGTCCSTTCEEEE
T ss_pred EEEEEEEccCCCCceEEEEECCcChHHHHHHHHHH--HhCCCHHHEEEeccCeEccCcCc-----HHHcCCCCCCCEEEE
Confidence 48999999875 34478999999999999999999 99999999999999999998888 999999 599999 5
Q ss_pred EEec
Q 032671 86 AAVK 89 (136)
Q Consensus 86 v~~~ 89 (136)
++..
T Consensus 97 ~l~~ 100 (105)
T 4dbg_A 97 YLLS 100 (105)
T ss_dssp EECC
T ss_pred EEEe
Confidence 5443
No 66
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.64 E-value=1.5e-15 Score=110.80 Aligned_cols=71 Identities=14% Similarity=0.260 Sum_probs=62.4
Q ss_pred CCCceEEEEEeCCCCCcE-EEEecCCCcHHHHHHHHHhc---cCCCCCC--CceEEEecCeecCCCCCCCCCCccccCCC
Q 032671 6 ISESVEITVKTIGPAPPS-RLSVSSPIKVRDLRKLIATS---SANHLPI--ENLRLVFRGKVLDDTQDDDDRDDVYLQLS 79 (136)
Q Consensus 6 ~~~~m~I~VKt~~~~~~~-~v~v~~~~TV~eLK~~Ia~~---~~~gi~~--~~QRLI~~GK~L~D~~t~d~~~L~~~~I~ 79 (136)
-.+.|+|+||+..|+. + .++++++.||.+||++|++. .+.++|+ ++|||||.||+|+|+.+ |++|+|+
T Consensus 13 ~~~~~~i~~kt~~G~~-i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~T-----Lsdy~I~ 86 (126)
T 1se9_A 13 VHNQLEIKFRLTDGSD-IGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKT-----VKDYRSP 86 (126)
T ss_dssp SCCCEEEEEEETTSCE-EEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSB-----GGGGSCC
T ss_pred hcccEEEEEEECCCCE-EEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCc-----HHHcCCC
Confidence 3578999999999976 6 69999999999999999431 1667886 89999999999999989 9999999
Q ss_pred CCC
Q 032671 80 NGD 82 (136)
Q Consensus 80 dG~ 82 (136)
+|+
T Consensus 87 ~~~ 89 (126)
T 1se9_A 87 VSN 89 (126)
T ss_dssp TTS
T ss_pred cCC
Confidence 995
No 67
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.63 E-value=1.1e-15 Score=110.46 Aligned_cols=74 Identities=20% Similarity=0.347 Sum_probs=67.4
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEec
Q 032671 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAVK 89 (136)
Q Consensus 10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~~~ 89 (136)
|+|+||+.+++. +.+++++++||.+||++|++ .+|+|+++|||+|+|+.|+|+.+ |.+|||++|++|++...
T Consensus 1 M~i~vk~~~g~~-~~~~v~~~~tv~~lK~~i~~--~~gip~~~q~L~~~g~~L~d~~t-----L~~~~i~~~~~l~l~~~ 72 (152)
T 3b08_A 1 MQIFVKTLTGKT-ITLEVEPSDTIENVKAKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIQKESTLHLVLR 72 (152)
T ss_dssp CEEEEEETTSCE-EEEECCTTCBHHHHHHHHHH--HHCCCGGGEEEEETTEECCTTSB-----TGGGTCCTTCEEEEEEC
T ss_pred CEEEEEeCCCCE-EEEEECCCCCHHHHHHHHHH--HHCcChHHeEEEECCeECcCccc-----HHHhccCCCCeeEEEee
Confidence 789999998865 88999999999999999999 99999999999999999998888 99999999999966555
Q ss_pred CC
Q 032671 90 PK 91 (136)
Q Consensus 90 p~ 91 (136)
+.
T Consensus 73 ~~ 74 (152)
T 3b08_A 73 LR 74 (152)
T ss_dssp CT
T ss_pred cc
Confidence 43
No 68
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.63 E-value=1.5e-15 Score=107.58 Aligned_cols=75 Identities=17% Similarity=0.281 Sum_probs=66.2
Q ss_pred CCceEEEEEeCCC---------CCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccC
Q 032671 7 SESVEITVKTIGP---------APPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQ 77 (136)
Q Consensus 7 ~~~m~I~VKt~~~---------~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~ 77 (136)
.+.|+|.|++.+. ...+.++|++++||.+||++|++ .+|+|+++|||+|+|+.|.|+.+ |++|+
T Consensus 23 ~~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~--~~gip~~~QrL~~~Gk~L~D~~t-----L~~y~ 95 (115)
T 1we7_A 23 KGPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHE--ATGMPAGKQKLQYEGIFIKDSNS-----LAYYN 95 (115)
T ss_dssp CSCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHH--HSSCCTTTEEEEETTEEECTTSB-----HHHHT
T ss_pred CCCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHH--HHCCChHHEEEEECCEECCCCCC-----HHHCC
Confidence 3679999998752 23478999999999999999999 99999999999999999998888 99999
Q ss_pred CCCCCEEEEEe
Q 032671 78 LSNGDSVIAAV 88 (136)
Q Consensus 78 I~dG~tIlv~~ 88 (136)
|++|++|++..
T Consensus 96 i~~g~~i~lv~ 106 (115)
T 1we7_A 96 MASGAVIHLAL 106 (115)
T ss_dssp CCSSCEEEEEE
T ss_pred CCCCCEEEEEE
Confidence 99999995544
No 69
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.62 E-value=3.4e-16 Score=113.06 Aligned_cols=72 Identities=15% Similarity=0.136 Sum_probs=62.3
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCC-------CCC
Q 032671 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLS-------NGD 82 (136)
Q Consensus 10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~-------dG~ 82 (136)
|+++|+...++.++.+++.++.||.+||++|+. +.|+|+++|||||.||.|+|+.+ |++|||+ +++
T Consensus 1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~--~egIP~~qQrLi~~Gk~LeD~~T-----Lsdy~I~~~~a~~q~~s 73 (118)
T 2fnj_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEG--ILKRPPEEQRLYKDDQLLDDGKT-----LGECGFTSQTARPQAPA 73 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHH--HHCCCGGGEEEEETTEECCTTSB-----HHHHTCCTTTSBTTBCE
T ss_pred CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHH--HhCCCHHHeEEEECCeECCCCCC-----HHHcCcccccccCCCCC
Confidence 455566555655588999999999999999999 99999999999999999999988 9999999 799
Q ss_pred EE-EEEe
Q 032671 83 SV-IAAV 88 (136)
Q Consensus 83 tI-lv~~ 88 (136)
+| +++.
T Consensus 74 tL~L~lr 80 (118)
T 2fnj_B 74 TVGLAFR 80 (118)
T ss_dssp EEEEEEB
T ss_pred EEEEEec
Confidence 99 5443
No 70
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.62 E-value=9.2e-16 Score=118.46 Aligned_cols=73 Identities=21% Similarity=0.329 Sum_probs=67.3
Q ss_pred ceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEe
Q 032671 9 SVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAV 88 (136)
Q Consensus 9 ~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~~ 88 (136)
.|+|+||+.+++. +.++|++++||.+||++|++ .+++|+++|||+|+|+.|+|+.+ |++|+|++|++|++..
T Consensus 105 eMqI~VKtl~Gkt-~~l~V~~s~TV~~LK~kI~~--~~gIp~~~QrLi~~Gk~L~D~~t-----L~dygI~~gstI~Lvl 176 (189)
T 3q3f_A 105 GGQIFVKTLTGKT-ITLEVEPSDTIENVKAKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIQKESTLHLVL 176 (189)
T ss_dssp CEEEEEECTTSCE-EEEEECTTCBHHHHHHHHHH--HHCCCGGGCCEEETTEECCTTCB-----GGGGTCCTTCEEEECC
T ss_pred ceeeeeecCCCCE-EEEEeCCCCcHHHHHHHHHh--ccCCCHHHEEEEECCEECCCCCC-----HHHCCCCCCCEEEEEE
Confidence 4999999998876 89999999999999999999 99999999999999999999888 9999999999995544
Q ss_pred c
Q 032671 89 K 89 (136)
Q Consensus 89 ~ 89 (136)
.
T Consensus 177 r 177 (189)
T 3q3f_A 177 R 177 (189)
T ss_dssp C
T ss_pred E
Confidence 3
No 71
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.62 E-value=2.7e-15 Score=107.80 Aligned_cols=78 Identities=15% Similarity=0.227 Sum_probs=65.2
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecC---ee----cCCCCCCCCCCccccCCCC
Q 032671 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRG---KV----LDDTQDDDDRDDVYLQLSN 80 (136)
Q Consensus 8 ~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~G---K~----L~D~~t~d~~~L~~~~I~d 80 (136)
..|+|+|++.+....+.+++++++||.+||++|+. .+|+||++|||+|.| +. ++|+.+ |.+|||++
T Consensus 5 ~~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~--~~Gip~~~qrL~~~g~~~~~~~~l~~D~~t-----L~~y~i~~ 77 (122)
T 1t0y_A 5 EVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLEL--VVGTTVDSMRIQLFDGDDQLKGELTDGAKS-----LKDLGVRD 77 (122)
T ss_dssp CEEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHH--HHCCCTTTEEEEEECSSSSEEEECCCCSSB-----TTTTTCCS
T ss_pred CEEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHH--HhCCCHHHeEEEEecCCCccccccCCCcCC-----HHHCCCCC
Confidence 57999999876643478999999999999999999 999999999999987 42 366666 99999999
Q ss_pred CCEEEEE-ecCCC
Q 032671 81 GDSVIAA-VKPKP 92 (136)
Q Consensus 81 G~tIlv~-~~p~~ 92 (136)
|++|+|+ ..|..
T Consensus 78 g~~ihvvd~~p~~ 90 (122)
T 1t0y_A 78 GYRIHAVDVTGGN 90 (122)
T ss_dssp SEEEEEEECTTCC
T ss_pred CCEEEEEeCCCCC
Confidence 9999554 45444
No 72
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.61 E-value=6.8e-16 Score=111.53 Aligned_cols=72 Identities=14% Similarity=0.138 Sum_probs=65.0
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCC-------CC
Q 032671 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSN-------GD 82 (136)
Q Consensus 10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~d-------G~ 82 (136)
|.++|+...++.++.+++.++.||.+||++|+. ..|+|+++|||||.|+.|+|+.+ |++|||++ ++
T Consensus 1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~--~~giPp~qQrLI~~Gk~LeD~kT-----L~dy~I~~~ta~~q~~a 73 (118)
T 4ajy_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEG--ILKRPPDEQRLYKDDQLLDDGKT-----LGECGFTSQTARPQAPA 73 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHH--HHCCCGGGEEEEETTEECCTTSB-----TTTTTCCGGGSBTTBCE
T ss_pred CceEEEEecCCEEEEEEcCCCChHHHHHHHHHH--HHCCCHHHeEEEeCCeECCCcCC-----HHHcCCCcCcccCCCCC
Confidence 567788777776688899999999999999999 99999999999999999999988 99999999 99
Q ss_pred EE-EEEe
Q 032671 83 SV-IAAV 88 (136)
Q Consensus 83 tI-lv~~ 88 (136)
+| +++.
T Consensus 74 tl~Lvlr 80 (118)
T 4ajy_B 74 TVGLAFR 80 (118)
T ss_dssp EEEEEEC
T ss_pred EEEEEEe
Confidence 99 6553
No 73
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.60 E-value=5.9e-17 Score=117.01 Aligned_cols=71 Identities=23% Similarity=0.354 Sum_probs=0.0
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEe
Q 032671 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAV 88 (136)
Q Consensus 10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~~ 88 (136)
|+|+||+.+|.. +.++|++++||.+||++|++ .+|+|+++|||+|+|+.|+|+.+ |++|||++|++|++..
T Consensus 1 M~I~Vk~~~G~~-~~l~v~~~~TV~~LK~~I~~--~~gip~~~QrLi~~Gk~L~D~~t-----L~~~~I~~gsti~l~~ 71 (128)
T 3u5e_m 1 MQIFVKTLTGKT-ITLEVESSDTIDNVKSKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIQKESTLHLVL 71 (128)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCE-EEEEeCCCCCHHHHHHHHHH--HhCcChHHEEEEECCEECCCCCc-----hhhhccCCCCEEEEEE
Confidence 789999998866 88999999999999999998 99999999999999999998888 9999999999995444
No 74
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.59 E-value=5.7e-15 Score=106.75 Aligned_cols=74 Identities=20% Similarity=0.343 Sum_probs=67.5
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 032671 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAA 87 (136)
Q Consensus 8 ~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~ 87 (136)
+.|+|+||+..++. +.+++++++||.+||++|++ .+|+|+++|||+|+|+.|.|+.+ |.+|||++|++|++.
T Consensus 75 ~~~~i~Vk~~~g~~-~~~~v~~~~tv~~lK~~i~~--~~gi~~~~qrL~~~g~~L~d~~t-----L~~~~i~~~~~i~l~ 146 (152)
T 3b08_A 75 GGMQIFVKTLTGKT-ITLEVEPSDTIENVKAKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIQKESTLHLV 146 (152)
T ss_dssp TCEEEEEEESSSCE-EEEEECTTCBHHHHHHHHHH--HHCCCGGGEEEEETTEECCTTSB-----TGGGTCCTTCEEEEE
T ss_pred cccceeeeecCCCE-EEEEeCCCCcHHHHHHHHHH--HhCcChhhEEEEECCEECCCCCC-----HHHcCCCCCCEEEEE
Confidence 45899999998865 88999999999999999999 99999999999999999998888 999999999999655
Q ss_pred ec
Q 032671 88 VK 89 (136)
Q Consensus 88 ~~ 89 (136)
..
T Consensus 147 ~r 148 (152)
T 3b08_A 147 LR 148 (152)
T ss_dssp EC
T ss_pred Ee
Confidence 43
No 75
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.58 E-value=1.1e-14 Score=99.13 Aligned_cols=75 Identities=12% Similarity=0.158 Sum_probs=62.2
Q ss_pred ceEEEEEeCCCC-CcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEe-------cCeecCCCCCCCCCCccccCCCC
Q 032671 9 SVEITVKTIGPA-PPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVF-------RGKVLDDTQDDDDRDDVYLQLSN 80 (136)
Q Consensus 9 ~m~I~VKt~~~~-~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~-------~GK~L~D~~t~d~~~L~~~~I~d 80 (136)
.++|.|.....+ ..+.+.+++++||.+||++|+. .+|+||++|||+| .|+.++|+.+ |++|||++
T Consensus 2 ~V~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~--~~Gip~~~QrLi~~~~~~~~~g~~l~d~~t-----L~~Y~i~~ 74 (86)
T 4b6w_A 2 VVKVSLTHSASRMRVPEKRYGLAQTIESIKENVFT--HFATPPEYMQLQLIDDRGITIEKNMANDKQ-----LGYYQCRD 74 (86)
T ss_dssp EEEEEEEETTCSCCEEEEEEETTSBHHHHHHHHHT--TSCCCGGGEEEEEECTTSCEEESSCCTTSB-----GGGGTCCT
T ss_pred EEEEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHH--HHCCCHHHEEEEEecCCCCceeeEcCCCCC-----HHHCCCCC
Confidence 467777755433 3256899999999999999999 9999999999997 4888998888 99999999
Q ss_pred CCEEEEE-ecC
Q 032671 81 GDSVIAA-VKP 90 (136)
Q Consensus 81 G~tIlv~-~~p 90 (136)
|++|.+. ..|
T Consensus 75 g~~ihlvd~~P 85 (86)
T 4b6w_A 75 EFVIHVVDLQP 85 (86)
T ss_dssp TCEEEEEECCC
T ss_pred CCEEEEEeCCC
Confidence 9999444 344
No 76
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.58 E-value=5.8e-15 Score=102.88 Aligned_cols=76 Identities=11% Similarity=0.113 Sum_probs=64.2
Q ss_pred CCCCceEEEEEeCCCC-CcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCe---e----cCCCCCCCCCCcccc
Q 032671 5 EISESVEITVKTIGPA-PPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGK---V----LDDTQDDDDRDDVYL 76 (136)
Q Consensus 5 e~~~~m~I~VKt~~~~-~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK---~----L~D~~t~d~~~L~~~ 76 (136)
-+++.+.|.|++...+ ..+.+++++++||.+||++|+. .+|+||++|||+|.|+ . ++|+.+ |++|
T Consensus 10 ~~~~~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~--~~Gip~~~QrLi~~g~~g~~~~~L~~D~~t-----L~~Y 82 (97)
T 2kj6_A 10 HGDDSVHLHITHANLKSFSADARFSPQMSVEAVKEKLWK--KCGTSVNSMALELYDDSGSKVAVLSDDSRP-----LGFF 82 (97)
T ss_dssp CCCCCEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHH--HHCCCTTSEEEEEECSSSCBCCCSSGGGSC-----HHHH
T ss_pred CCCceEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHH--HHCcCHHHeEEEEecCCCcccceecCCcCC-----HHHC
Confidence 3578899999986553 2378999999999999999999 9999999999999984 3 355555 9999
Q ss_pred CCCCCCEEEEE
Q 032671 77 QLSNGDSVIAA 87 (136)
Q Consensus 77 ~I~dG~tIlv~ 87 (136)
+|++|++|.+.
T Consensus 83 ~I~~g~~Ihlv 93 (97)
T 2kj6_A 83 SPFDGFRLHII 93 (97)
T ss_dssp CCCSCCEEEEE
T ss_pred CCCCCCEEEEE
Confidence 99999999443
No 77
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=5.2e-15 Score=103.78 Aligned_cols=74 Identities=12% Similarity=0.172 Sum_probs=61.8
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEe--cCeecCCCCCCCCCCccccCCCCCCEE
Q 032671 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVF--RGKVLDDTQDDDDRDDVYLQLSNGDSV 84 (136)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~--~GK~L~D~~t~d~~~L~~~~I~dG~tI 84 (136)
...|.+++++.+++. +.|+|+++.||.+||++|++ ++||||++|||+| .|+ |+|+.+ |++|+|++|++|
T Consensus 6 ~~~m~~~~vk~~Gk~-~~v~v~~~~TV~~LK~~I~~--~tgIpp~~QkLi~~~~gk-L~D~~t-----Ls~~~I~~gstL 76 (100)
T 2dzm_A 6 SGRMLDFRVEYRDRN-VDVVLEDTCTVGEIKQILEN--ELQIPVSKMLLKGWKTGD-VEDSTV-----LKSLHLPKNNSL 76 (100)
T ss_dssp CCCEEEEEEECSSCE-EEEEEETTSBHHHHHHHHHH--HHCCCTTTCCEECCSSSC-CCTTSB-----HHHHCCCSEEEE
T ss_pred CcceEEEEEEeCCeE-EEEEECCCCcHHHHHHHHHH--HHCCChhHeEEEccCCCC-CCCcCC-----HHHcCCCCCCEE
Confidence 345776776667765 88999999999999999999 9999999999996 555 887777 999999999998
Q ss_pred EEEec
Q 032671 85 IAAVK 89 (136)
Q Consensus 85 lv~~~ 89 (136)
++.-.
T Consensus 77 ~lvl~ 81 (100)
T 2dzm_A 77 YVLTP 81 (100)
T ss_dssp EECCS
T ss_pred EEEec
Confidence 65433
No 78
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.58 E-value=3e-15 Score=123.34 Aligned_cols=76 Identities=18% Similarity=0.186 Sum_probs=66.0
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEE---ecCeecCCCCCCCCCCccccCCCCCCE
Q 032671 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLV---FRGKVLDDTQDDDDRDDVYLQLSNGDS 83 (136)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI---~~GK~L~D~~t~d~~~L~~~~I~dG~t 83 (136)
.+.|+|+||+. |+. +.+++++++||.+||++|++ .+|+||++|||| |+|+.|+|+.+ |++|||++|++
T Consensus 3 ~~~i~i~Vk~~-g~~-~~v~v~~~~Tv~~lK~~I~~--~tgVpp~~QkLi~~k~~Gk~l~D~~~-----L~~~~ik~g~~ 73 (320)
T 3shq_A 3 VKEVVVIVKWS-GKE-YPVDLTDQDTVEVLRHEIFR--KTQVRPERQKLLNLKYKGKTAADNVK-----ISALELKPNFK 73 (320)
T ss_dssp -CEEEEEEEET-TEE-EEEEEETTSBHHHHHHHHHH--HHCCCGGGCEETTCBSSSSBCCTTSB-----TTSSCCC--CE
T ss_pred CceEEEEEEEC-CEE-EEEEECCCCcHHHHHHHHHH--HHCcCHHHeEEeecccCCcccCcccc-----HHHcCCCCCCE
Confidence 46799999984 433 88999999999999999999 999999999999 89999999888 99999999999
Q ss_pred EEEEecCC
Q 032671 84 VIAAVKPK 91 (136)
Q Consensus 84 Ilv~~~p~ 91 (136)
|++++.+.
T Consensus 74 l~L~gs~~ 81 (320)
T 3shq_A 74 LMMVGSTE 81 (320)
T ss_dssp EEEECCCC
T ss_pred EEEEccch
Confidence 98777654
No 79
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.57 E-value=7e-15 Score=101.96 Aligned_cols=74 Identities=9% Similarity=0.116 Sum_probs=63.4
Q ss_pred CCCceEEEEEeCCCC-CcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEec--Ce---ec-CCCCCCCCCCccccCC
Q 032671 6 ISESVEITVKTIGPA-PPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFR--GK---VL-DDTQDDDDRDDVYLQL 78 (136)
Q Consensus 6 ~~~~m~I~VKt~~~~-~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~--GK---~L-~D~~t~d~~~L~~~~I 78 (136)
.++.|+|+|++..++ ..+.+++++++||.+||++|+. .+|+||++|||+|. |+ .| +|+.+ |++|||
T Consensus 12 ~~~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~--~~GiP~~~QrL~~~~~g~~~~~L~~D~~t-----L~~Y~i 84 (95)
T 2kjr_A 12 KSDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEI--LTGGCAGTMKVQVFKGDTCVSTMDNNDAQ-----LGYYAN 84 (95)
T ss_dssp CCCEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHH--HHCSCTTTEEEEEEETTEEEEECCCTTSB-----HHHHCC
T ss_pred CCCeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHH--HHCcCHHHeEEEEecCCcccceeCCCCCC-----HhHCCc
Confidence 357899999987664 2377899999999999999999 99999999999998 45 34 67666 999999
Q ss_pred CCCCEEEE
Q 032671 79 SNGDSVIA 86 (136)
Q Consensus 79 ~dG~tIlv 86 (136)
++|++|.+
T Consensus 85 ~~gstihl 92 (95)
T 2kjr_A 85 SDGLRLHV 92 (95)
T ss_dssp SSSCEEEE
T ss_pred CCCCEEEE
Confidence 99999954
No 80
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.57 E-value=1.6e-14 Score=99.24 Aligned_cols=73 Identities=11% Similarity=0.065 Sum_probs=62.7
Q ss_pred ceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecC---ee----cCCCCCCCCCCccccCCCCC
Q 032671 9 SVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRG---KV----LDDTQDDDDRDDVYLQLSNG 81 (136)
Q Consensus 9 ~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~G---K~----L~D~~t~d~~~L~~~~I~dG 81 (136)
.|+|+|++.+....+.+++++++||.+||++|+. .+|+|+++|||+|.| +. ++|+.+ |.+|||++|
T Consensus 7 ~v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~--~~gip~~~qrL~~~~~~g~~~~~l~~D~~t-----L~~y~i~~g 79 (95)
T 1v6e_A 7 GVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLEL--VVGSPASCMELELYGADDKFYSKLDQEDAL-----LGSYPVDDG 79 (95)
T ss_dssp CEEEEEEETTSSSCEEEEECTTSBHHHHHHHHHH--HTCSCTTTCBCEEECSSSCEEEECCCSSSB-----TTSSSCCTT
T ss_pred EEEEEEEECCCCeeEEEEcCccCHHHHHHHHHHH--HHCCCHHHeEEEEeCCCCccccccCCCcCC-----HhHCCCCCC
Confidence 4899999876643478999999999999999999 999999999999987 43 466666 999999999
Q ss_pred CEEEEEe
Q 032671 82 DSVIAAV 88 (136)
Q Consensus 82 ~tIlv~~ 88 (136)
++|+|+-
T Consensus 80 ~~l~v~d 86 (95)
T 1v6e_A 80 CRIHVID 86 (95)
T ss_dssp CEEEEBC
T ss_pred CEEEEEE
Confidence 9996654
No 81
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.56 E-value=2.4e-16 Score=117.92 Aligned_cols=70 Identities=23% Similarity=0.351 Sum_probs=0.0
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 032671 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAA 87 (136)
Q Consensus 10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~ 87 (136)
|+|+||+.+|.. +.++|++++||.+||++|++ .+|+|+++|||+|+|+.|.|+.+ |++|+|++|++|++.
T Consensus 1 MqI~VK~l~G~~-~~l~V~~~~TV~~LK~~I~~--~~gip~~~QrLi~~Gk~L~D~~t-----L~dygI~~gstL~Lv 70 (152)
T 3u5c_f 1 MQIFVKTLTGKT-ITLEVESSDTIDNVKSKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIQKESTLHLV 70 (152)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCE-EEEEECCCCCHHHHHHHHHH--HhCCCHHHEEEEECCEEccccCc-----HHHcCCCCCCEEEEE
Confidence 789999998876 88999999999999999998 99999999999999999999888 999999999999443
No 82
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.56 E-value=7.9e-15 Score=109.64 Aligned_cols=73 Identities=21% Similarity=0.336 Sum_probs=67.2
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 032671 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAA 87 (136)
Q Consensus 8 ~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~ 87 (136)
+.|+|+||+.+++. +.+++++++||.+||++|+. .+|+|+++|||+|+|+.|+|+.+ |.+|+|++|++|++.
T Consensus 95 gg~~i~Vk~~~g~~-~~l~v~~~~tV~~lK~~I~~--~~gip~~~q~L~~~g~~L~D~~t-----L~~y~i~~g~tl~l~ 166 (172)
T 3u30_A 95 GGMQIFVKTLTGKT-ITLEVEPSDTIENVKAKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIQKESTLHLV 166 (172)
T ss_dssp CCEEEEEEESSCCE-EEEEECTTCBHHHHHHHHHH--HHCCCGGGCCEEETTEECCTTSB-----SGGGTCCTTCEEEEC
T ss_pred ccccceeecccCcc-eeEEecCCCCHHHHHHHHHH--HhCCCceeEEEEECCccCCCCCc-----HHHhCCCCCCEEEEE
Confidence 56899999998866 88999999999999999999 99999999999999999999888 999999999999554
Q ss_pred e
Q 032671 88 V 88 (136)
Q Consensus 88 ~ 88 (136)
.
T Consensus 167 ~ 167 (172)
T 3u30_A 167 L 167 (172)
T ss_dssp C
T ss_pred E
Confidence 3
No 83
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.54 E-value=7.8e-15 Score=123.08 Aligned_cols=78 Identities=22% Similarity=0.380 Sum_probs=67.4
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhcc-CCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-
Q 032671 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSS-ANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV- 84 (136)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~-~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI- 84 (136)
...|+|+||+..++. +.|+|+++.||.+||++|+... +.|+|+++|||||+||.|+|+.+ |.+|+|++|++|
T Consensus 5 ~~~M~I~VKtl~Gk~-~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~t-----L~dygI~~gstIv 78 (368)
T 1oqy_A 5 SSAVTITLKTLQQQT-FKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVP-----IRDYRIDEKNFVV 78 (368)
T ss_dssp -CCCCEEEEETTTEE-EEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSB-----TTTTCCCTTSCEE
T ss_pred CceEEEEEEeCCCCE-EEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCC-----HHHcCCCCCCEEE
Confidence 467999999998865 8899999999999999998722 36799999999999999999888 999999999999
Q ss_pred EEEecC
Q 032671 85 IAAVKP 90 (136)
Q Consensus 85 lv~~~p 90 (136)
++..++
T Consensus 79 ~lv~k~ 84 (368)
T 1oqy_A 79 VMVTKT 84 (368)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 555443
No 84
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.54 E-value=1.1e-14 Score=102.33 Aligned_cols=75 Identities=27% Similarity=0.314 Sum_probs=64.2
Q ss_pred CCceEEEEEeCCCCCcEEEEec-CCCcHHHHHHHHHhccCCCCCCCceEEEecCe-----------e----cCCCCCCCC
Q 032671 7 SESVEITVKTIGPAPPSRLSVS-SPIKVRDLRKLIATSSANHLPIENLRLVFRGK-----------V----LDDTQDDDD 70 (136)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~v~v~-~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK-----------~----L~D~~t~d~ 70 (136)
.+.|.|.||+..|. ..|+|+ +++||.+||++|++ .+++|+++|||+|.|+ . ++|+.+
T Consensus 5 ~~~M~irvrs~~G~--~~v~v~~~~~Tv~~LK~kI~~--~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~t--- 77 (107)
T 1wf9_A 5 SSGTMLRVRSRDGL--ERVSVDGPHITVSQLKTLIQD--QLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLR--- 77 (107)
T ss_dssp CCCEEEEEECSSCE--EEEEECCTTSBHHHHHHHHHH--HSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCB---
T ss_pred CCeEEEEEECCCCC--EEEEECCCCCcHHHHHHHHHH--HhCcCcccCEEEECCccccccCccccccccccCCCCCC---
Confidence 35599999999885 478999 99999999999999 9999999999999998 3 345555
Q ss_pred CCccccCCCCCCEEEEEecC
Q 032671 71 RDDVYLQLSNGDSVIAAVKP 90 (136)
Q Consensus 71 ~~L~~~~I~dG~tIlv~~~p 90 (136)
|++|||++|++|++...+
T Consensus 78 --L~~~gi~~G~~L~l~~~~ 95 (107)
T 1wf9_A 78 --ISSLNLAHGSMVYLAYEG 95 (107)
T ss_dssp --GGGTCCCTTCEEECCCSS
T ss_pred --HHHCCCCCCCEEEEEeCC
Confidence 999999999999766544
No 85
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.51 E-value=3.5e-14 Score=116.75 Aligned_cols=74 Identities=22% Similarity=0.346 Sum_probs=67.9
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032671 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA 86 (136)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv 86 (136)
...|+|+||+..++. +.+++++++||.+||++|++ .+++|+++|||+|+|+.|+|+.+ |++|+|++|++|++
T Consensus 231 ~~~MqI~VKtl~Gk~-~~leV~~s~TV~dLK~kI~~--~~GIp~~~QRLi~~Gk~L~D~~T-----LsdygI~~gstL~L 302 (307)
T 3ai5_A 231 TGSMQIFVKTLTGKT-ITLEVEPSDTIENVKAKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIQKESTLHL 302 (307)
T ss_dssp CCCEEEEEECTTSCE-EEEEECTTCBHHHHHHHHHH--HHCCCGGGCEEEETTEECCTTSB-----TGGGTCCTTCEEEE
T ss_pred CCeEEEEEEeCCCCE-EEEEECCCCcHHHHHHHHHH--HHCcChHHEEEEeCCeecCCCCC-----HHHcCCCCCCEEEE
Confidence 477999999998865 88999999999999999999 99999999999999999998888 99999999999955
Q ss_pred Ee
Q 032671 87 AV 88 (136)
Q Consensus 87 ~~ 88 (136)
..
T Consensus 303 vl 304 (307)
T 3ai5_A 303 VL 304 (307)
T ss_dssp EC
T ss_pred EE
Confidence 43
No 86
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.50 E-value=2.3e-14 Score=96.64 Aligned_cols=76 Identities=24% Similarity=0.288 Sum_probs=62.2
Q ss_pred eEEEEEeCCCCCcEEEE-ecCCCcHHHHHHHHHhccCCCCCCCceEEEec--CeecCCCCCCCCCCccccCCCCCCEEEE
Q 032671 10 VEITVKTIGPAPPSRLS-VSSPIKVRDLRKLIATSSANHLPIENLRLVFR--GKVLDDTQDDDDRDDVYLQLSNGDSVIA 86 (136)
Q Consensus 10 m~I~VKt~~~~~~~~v~-v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~--GK~L~D~~t~d~~~L~~~~I~dG~tIlv 86 (136)
|+|.||+.+|+. .++ +++++||.+||+.|++ ++|+|+++|||+|. +|.|.-+ +|+.+|++|||++|++|+|
T Consensus 1 m~i~vr~~~G~~--~v~~l~~~~Tv~~Lk~~I~~--~~gi~~~~qrL~~~~p~k~l~l~--~~~~tL~~~gl~~g~~l~v 74 (86)
T 2kzr_A 1 WRVRCKAKGGTH--LLQGLSSRTRLRELQGQIAA--ITGIAPGSQRILVGYPPECLDLS--DRDITLGDLPIQSGDMLIV 74 (86)
T ss_dssp CCEEEEETTEEE--EECSCCTTCBHHHHHHHHHH--HTCCCTTTCCCEESSCCCCCCCC--CSSCBTTTSSCCTTCEEEC
T ss_pred CEEEEEcCCCCE--EeeecCCCCCHHHHHHHHHH--HhCCCccceEEEeCCCCcccccC--CCCCCHHHcCCCCCCEEEE
Confidence 789999999954 577 9999999999999999 99999999999987 4777411 1234599999999999977
Q ss_pred EecCC
Q 032671 87 AVKPK 91 (136)
Q Consensus 87 ~~~p~ 91 (136)
.....
T Consensus 75 ~~~~~ 79 (86)
T 2kzr_A 75 EEDQT 79 (86)
T ss_dssp CCCSC
T ss_pred EeCCC
Confidence 66543
No 87
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.40 E-value=9.4e-13 Score=91.00 Aligned_cols=75 Identities=13% Similarity=0.341 Sum_probs=67.1
Q ss_pred CCCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE
Q 032671 5 EISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV 84 (136)
Q Consensus 5 e~~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI 84 (136)
..++.|+|+||+..++. +.+.|.+++++..|++++++ +.++++++|||+|.|+.|.++.| +++|++++||+|
T Consensus 3 ~~~~~i~ikVk~~~g~~-i~~~v~~~t~l~kl~~~y~~--~~gi~~~~~rf~FdG~~l~~~~T-----p~dl~medgD~I 74 (94)
T 2io1_B 3 HMNDHINLKVAGQDGSV-VQFKIKRHTPLSKLMKAYCE--RQGLSMRQIRFRFDGQPINETDT-----PAQLEMEDEDTI 74 (94)
T ss_dssp ---CEEEEEEECTTSCE-EEEEEETTSCTHHHHHHHHH--HHTCCGGGEEEEETTEECCTTCC-----TTTTTCCTTCEE
T ss_pred CCCCeEEEEEECCCCCE-EEEEECCCCHHHHHHHHHHH--HhCCCcccEEEEECCEEcCCCCC-----HHHcCCCCCCEE
Confidence 34678999999998865 88999999999999999999 99999999999999999999988 999999999999
Q ss_pred -EEE
Q 032671 85 -IAA 87 (136)
Q Consensus 85 -lv~ 87 (136)
++.
T Consensus 75 dv~~ 78 (94)
T 2io1_B 75 DVFQ 78 (94)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 444
No 88
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.35 E-value=7.6e-14 Score=107.91 Aligned_cols=65 Identities=18% Similarity=0.244 Sum_probs=0.0
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EEE
Q 032671 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IAA 87 (136)
Q Consensus 10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI-lv~ 87 (136)
|+|+||++.+.. +.++|+++.||.+||++|++ ..|+|+++|||||.|+.|.|+.+ |+ ++++| +++
T Consensus 1 MqI~VKtL~Gkt-itLeV~~sdTV~~LK~kI~~--keGIP~~qQRLIf~GK~LeD~~T-----Ls-----~~STLhLvl 66 (189)
T 2xzm_9 1 MQVQVKTLEGET-KIYTLEQGTSVLDLKSQISQ--DMGFEIDMMTLVNNGFIAPNTEL-----VT-----DDVTYYLSL 66 (189)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred CEEEEEcCCCCE-EEEEECCcChHHHHHHHHHH--HhCcChhHEEEEecCeECCCCCc-----cc-----CCCEEEEEE
Confidence 789999998865 88999999999999999998 99999999999999999999888 87 89999 553
No 89
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.33 E-value=6.4e-12 Score=86.43 Aligned_cols=74 Identities=14% Similarity=0.326 Sum_probs=67.3
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-E
Q 032671 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-I 85 (136)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI-l 85 (136)
++.|+|+|++..++. +.+.|.+++++..|++++++ +.|++++++||+|.|+.|.++.| .++|++++||+| +
T Consensus 3 ~~~i~ikVk~~~g~~-v~~~vk~~t~l~kl~~~y~~--~~gi~~~~~rf~FdG~~l~~~~T-----p~dl~medgD~Idv 74 (91)
T 2io0_B 3 NDHINLKVAGQDGSV-VQFKIKRHTPLSKLMKAYCE--RQGLSMRQIRFRFDGQPINETDT-----PAQLEMEDEDTIDV 74 (91)
T ss_dssp -CEEEEEEECTTSCE-EEEEEETTSCTHHHHHHHHH--HTTCCSTTEEEEETTEECCTTCC-----TTTTTCCTTEEEEE
T ss_pred CCeEEEEEECCCCCE-EEEEECCCChHHHHHHHHHH--HhCCCcccEEEEECCEEcCCCCC-----HHHcCCCCCCEEEE
Confidence 478999999988865 88999999999999999999 99999999999999999999988 999999999999 5
Q ss_pred EEe
Q 032671 86 AAV 88 (136)
Q Consensus 86 v~~ 88 (136)
+..
T Consensus 75 ~~~ 77 (91)
T 2io0_B 75 FQQ 77 (91)
T ss_dssp EEC
T ss_pred EEe
Confidence 443
No 90
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.32 E-value=7.4e-12 Score=83.64 Aligned_cols=75 Identities=20% Similarity=0.170 Sum_probs=68.3
Q ss_pred CCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEE
Q 032671 6 ISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVI 85 (136)
Q Consensus 6 ~~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIl 85 (136)
.++.|+|+|++..++..+.+.|.+++++..|++++++ +.|+++++|||+|.|+.|.++.| ..+|++++||+|-
T Consensus 4 ~~~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~--~~gi~~~~~rf~fdG~~l~~~~T-----p~~l~medgD~Id 76 (79)
T 3a4r_A 4 GSQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEE--AMGLSGHKLSFFFDGTKLSGKEL-----PADLGLESGDLIE 76 (79)
T ss_dssp CCCCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHH--HHTCTTCCCEEEETTEECCSCCC-----HHHHTCCTTCEEE
T ss_pred CCCEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHH--HhCCCcccEEEEECCEEcCCCCC-----HHHcCCCCCCEEE
Confidence 4577999999998863388999999999999999998 99999999999999999999988 9999999999996
Q ss_pred EE
Q 032671 86 AA 87 (136)
Q Consensus 86 v~ 87 (136)
|.
T Consensus 77 v~ 78 (79)
T 3a4r_A 77 VW 78 (79)
T ss_dssp EE
T ss_pred Ee
Confidence 54
No 91
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.32 E-value=2.1e-11 Score=83.70 Aligned_cols=77 Identities=14% Similarity=0.324 Sum_probs=61.6
Q ss_pred CCceEEEEEeC--CCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCe------e-cCCCCCCCCCCccccC
Q 032671 7 SESVEITVKTI--GPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGK------V-LDDTQDDDDRDDVYLQ 77 (136)
Q Consensus 7 ~~~m~I~VKt~--~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK------~-L~D~~t~d~~~L~~~~ 77 (136)
+..++|+|++. .....+...++.++||.+||.+|+. .+|+|+..|||.|.+. . |. +|+.+|.+|+
T Consensus 7 ~~~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~--~~gip~~~q~L~~~~~~~~~~~~~L~----~d~~~L~~y~ 80 (97)
T 1wjn_A 7 GQLLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSR--LLKVPVSELLLSYESSKMPGREIELE----NDLQPLQFYS 80 (97)
T ss_dssp SCEEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHT--TTTCCTTTCEEEEECTTSCSCEEECC----CSSSBSGGGT
T ss_pred CccEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHH--HHCCChhHeEEEEEcCCCCceeeccC----CCcccHhhcC
Confidence 56799999974 3333478899999999999999999 9999999999999842 2 32 2334599999
Q ss_pred CCCCCEEEEEec
Q 032671 78 LSNGDSVIAAVK 89 (136)
Q Consensus 78 I~dG~tIlv~~~ 89 (136)
+.+|++|+|...
T Consensus 81 i~~G~~I~V~d~ 92 (97)
T 1wjn_A 81 VENGDCLLVRWS 92 (97)
T ss_dssp CCTTCEEEEECC
T ss_pred CCCCCEEEEEec
Confidence 999999976653
No 92
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.29 E-value=1e-11 Score=81.32 Aligned_cols=69 Identities=14% Similarity=0.319 Sum_probs=64.5
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032671 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA 86 (136)
Q Consensus 10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv 86 (136)
|+|+|++..+.. +.+.+.+++++..|++++++ +.|++++.|||+|.|+.|.++.| .++|++++||+|-|
T Consensus 2 i~lkV~~~~g~~-v~~~v~~~t~l~kl~~~y~~--~~gi~~~~~rf~fdG~~l~~~~T-----p~~l~medgD~Idv 70 (72)
T 1wm3_A 2 INLKVAGQDGSV-VQFKIKRHTPLSKLMKAYCE--RQGLSMRQIRFRFDGQPINETDT-----PAQLEMEDEDTIDV 70 (72)
T ss_dssp EEEEEECTTSCE-EEEEECTTSCTHHHHHHHHH--HHTCCTTTCEEEETTEECCTTCC-----TTTTTCCTTEEEEE
T ss_pred EEEEEECCCCCE-EEEEECCCChHHHHHHHHHH--HhCCCcceEEEEECCEEcCCCCC-----HHHcCCCCCCEEEE
Confidence 789999988865 88999999999999999998 99999999999999999999988 99999999999944
No 93
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.26 E-value=2.1e-11 Score=83.86 Aligned_cols=73 Identities=14% Similarity=0.307 Sum_probs=66.9
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032671 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA 86 (136)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv 86 (136)
+..|+|+|++..+.. +.+.|.+++++..|+.++++ +.|++++.+||+|.|+.|.++.| ..+|++++||+|-|
T Consensus 15 ~~~i~ikV~~~~g~~-i~~~v~~~t~l~kl~~~y~~--~~gi~~~~~rf~fdG~~l~~~~T-----p~dl~medgD~Idv 86 (93)
T 2d07_B 15 NDHINLKVAGQDGSV-VQFKIKRHTPLSKLMKAYCE--RQGLSMRQIRFRFDGQPINETDT-----PAQLEMEDEDTIDV 86 (93)
T ss_dssp CCEEEEEEECTTSCE-EEEEEETTSCHHHHHHHHHH--HHTCCGGGEEEEETTEECCTTCC-----TTTTTCCTTEEEEE
T ss_pred CCeEEEEEECCCCCE-EEEEEccCCHHHHHHHHHHH--HhCCCccceEEEECCEEcCCCCC-----HHHcCCCCCCEEEE
Confidence 567999999988864 88999999999999999998 99999999999999999999888 99999999999944
Q ss_pred E
Q 032671 87 A 87 (136)
Q Consensus 87 ~ 87 (136)
+
T Consensus 87 ~ 87 (93)
T 2d07_B 87 F 87 (93)
T ss_dssp E
T ss_pred E
Confidence 3
No 94
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.21 E-value=3.7e-11 Score=84.58 Aligned_cols=74 Identities=14% Similarity=0.296 Sum_probs=67.5
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032671 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA 86 (136)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv 86 (136)
++.|+|+|++..+.. +.+.|.+++++..|+.++++ +.+++++.|||+|.|+.|.++.| ..+|++++||+|.|
T Consensus 22 ~~~I~IkVk~~~g~~-i~~kVk~~t~l~kL~~~y~e--k~gi~~~~~rf~FdG~~l~~~~T-----p~dl~medgD~Idv 93 (104)
T 1wz0_A 22 NDHINLKVAGQDGSV-VQFKIKRHTPLSKLMKAYCE--RQGLSMRQIRFRFDGQPINETDT-----PAQLEMEDEDTIDV 93 (104)
T ss_dssp SCCEEEEEECSSSCE-EEEEECTTSCHHHHHHHHHH--HHTCCTTTSCEESSSSBCCTTSC-----TTTTTCCTTEEEEE
T ss_pred CCeEEEEEECCCCCE-EEEEEcCCChHHHHHHHHHH--HhCCCcceEEEEECCEEcCCCCC-----HHHcCCCCCCEEEE
Confidence 467999999988865 88999999999999999998 99999999999999999999988 99999999999954
Q ss_pred Ee
Q 032671 87 AV 88 (136)
Q Consensus 87 ~~ 88 (136)
+.
T Consensus 94 ~~ 95 (104)
T 1wz0_A 94 FQ 95 (104)
T ss_dssp CC
T ss_pred EE
Confidence 43
No 95
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.19 E-value=2.4e-11 Score=86.41 Aligned_cols=73 Identities=18% Similarity=0.273 Sum_probs=67.2
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032671 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA 86 (136)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv 86 (136)
+..|+|+|++..+.. +.+.|.+++++..|++++++ +.++++++|||+|.|+.|.++.| ..+|++++||+|-|
T Consensus 24 ~~~I~IkVk~~~g~~-i~fkVk~~t~l~kL~~ay~e--k~gi~~~~~rfiFdG~~L~~~~T-----p~dl~mEDgD~Idv 95 (110)
T 2k8h_A 24 TALVAVKVVNADGAE-MFFRIKSRTALKKLIDTYCK--KQGISRNSVRFLFDGTPIDETKT-----PEELGMEDDDVIDA 95 (110)
T ss_dssp CCCEEEEEEETTSCC-EEEEECTTSSHHHHHHHHHH--HHTCCSSSCEEESSSCBCCSSSH-----HHHHHCSSEEEEEE
T ss_pred CCeEEEEEECCCCCE-EEEEECCCChHHHHHHHHHH--HhCCCcccEEEEECCEEcCCCCC-----HHHcCCCCCCEEEE
Confidence 456999999998875 88999999999999999998 99999999999999999999988 99999999999944
Q ss_pred E
Q 032671 87 A 87 (136)
Q Consensus 87 ~ 87 (136)
+
T Consensus 96 ~ 96 (110)
T 2k8h_A 96 M 96 (110)
T ss_dssp E
T ss_pred E
Confidence 3
No 96
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.16 E-value=1.1e-10 Score=82.62 Aligned_cols=72 Identities=17% Similarity=0.313 Sum_probs=65.4
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032671 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA 86 (136)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv 86 (136)
++.|+|+|++ .+.. +.+.|..++++..|++++++ +.|++++.+||+|.|+.|.++.| ..+|++++||+|-|
T Consensus 29 ~~~I~IkV~~-~g~~-i~fkIk~tt~l~kL~~ay~e--k~gi~~~~~rF~FdG~rl~~~~T-----p~dl~medgD~Idv 99 (106)
T 2eke_C 29 ETHINLKVSD-GSSE-IFFKIKKTTPLRRLMEAFAK--RQGKEMDSLRFLYDGIRIQADQT-----PEDLDMEDNDIIEA 99 (106)
T ss_dssp CSEEEEEEEC-SSCE-EEEEEETTSCTHHHHHHHHH--HHTCCGGGEEEEETTEECCTTCC-----TTTTTCCTTEEEEE
T ss_pred CCeEEEEEec-CCcE-EEEEeCCCCHHHHHHHHHHH--HhCCCcccEEEEECCeEcCCCCC-----HHHcCCCCCCEEEE
Confidence 4669999999 7754 88999999999999999998 99999999999999999999888 99999999999944
Q ss_pred E
Q 032671 87 A 87 (136)
Q Consensus 87 ~ 87 (136)
.
T Consensus 100 ~ 100 (106)
T 2eke_C 100 H 100 (106)
T ss_dssp E
T ss_pred E
Confidence 3
No 97
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=98.90 E-value=6.4e-09 Score=74.58 Aligned_cols=72 Identities=17% Similarity=0.348 Sum_probs=65.6
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032671 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA 86 (136)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv 86 (136)
++.|+|+|++..+.. +.+.|..++++..|+..+++ +.|++++.+||+|.|+.|.++.| ..++++++||+|-|
T Consensus 38 ~~~I~LKV~~qdg~e-v~fkIk~tt~L~KLm~aY~e--r~Gl~~~~irFlFDG~rI~~~~T-----P~dL~MEDgD~IdV 109 (115)
T 3kyd_D 38 GEYIKLKVIGQDSSE-IHFKVKMTTHLKKLKESYCQ--RQGVPMNSLRFLFEGQRIADNHT-----PKELGMEEEDVIEV 109 (115)
T ss_dssp -CEEEEEEECTTSCE-EEEEEETTSCTHHHHHHHHH--HHTCCTTSEEEEETTEECCTTCC-----TTTTTCCTTCEEEE
T ss_pred CCeEEEEEEcCCCCE-EEEEEccCChHHHHHHHHHH--HhCCChhhEEEEECCeECCCCCC-----HHHcCCCCCCEEEE
Confidence 467999999988866 78899999999999999998 99999999999999999999888 99999999999943
No 98
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.66 E-value=9.4e-08 Score=74.28 Aligned_cols=74 Identities=15% Similarity=0.298 Sum_probs=64.9
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-E
Q 032671 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-I 85 (136)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI-l 85 (136)
++.|+|+|+. .+.. +.+.|..++++..|+..+++ +.|++++++|++|.|+.|.+++| ..++++.+||+| +
T Consensus 27 ~~~I~LkV~~-~g~~-v~fkIk~~t~l~kL~~ay~e--r~Gi~~~~~RF~FdG~rI~~~~T-----P~dL~MEdgD~Idv 97 (200)
T 3pge_A 27 ETHINLKVSD-GSSE-IFFKIKKTTPLRRLMEAFAK--RQGKEMDSLRFLYDGIRIQADQT-----PEDLDMEDNDIIEA 97 (200)
T ss_dssp CCCEEEEEEC-SSCE-EEEEECTTSCTHHHHHHHHH--HHSSCGGGEEEEETTEECCTTCC-----TTTTTCCTTEEEEE
T ss_pred CCeEEEEEec-CCCE-EEEEEecCCHHHHHHHHHHH--HhCCChhhEEEEECCEEcCCCCC-----HHHcCCCCCCEEEE
Confidence 4558999974 5544 78999999999999999998 99999999999999999999999 999999999999 5
Q ss_pred EEec
Q 032671 86 AAVK 89 (136)
Q Consensus 86 v~~~ 89 (136)
+...
T Consensus 98 ~~~q 101 (200)
T 3pge_A 98 HREQ 101 (200)
T ss_dssp EECC
T ss_pred Eecc
Confidence 5443
No 99
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.65 E-value=9.7e-09 Score=68.75 Aligned_cols=73 Identities=14% Similarity=0.197 Sum_probs=57.6
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCee---cCCCCCCCCCCccccCCCCCCEE
Q 032671 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKV---LDDTQDDDDRDDVYLQLSNGDSV 84 (136)
Q Consensus 8 ~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~---L~D~~t~d~~~L~~~~I~dG~tI 84 (136)
+.|.|.||+..|. +.|++++++|+.+|+++|++ .++++++.|.+.+.-.. |. ...+.+|+++||+.||+|
T Consensus 3 ~~m~lRvrs~~G~--~Ri~v~~~~t~~~L~~~I~~--~~~i~~~~~~l~~~~~p~~~l~---~~~~~~l~~lgl~hGd~l 75 (80)
T 2pjh_A 3 ESIIIRVQSPDGV--KRITATKRETAATFLKKVAK--EFGFQNNGFSVYINRNKTGEIT---ASSSKSLHLLKIKHGDLL 75 (80)
T ss_dssp CCCCCEEECSSEE--EECCCCSSCCHHHHHHHHHH--HTCCCTTTCCCCCSCCGGGGSS---SCCCCTTTTTCCCTTCCE
T ss_pred CcEEEEEECCCCC--EEEEcCCcChHHHHHHHHHH--HcCCCCCcceEEecCCCCCccc---CCCCCCHHHcCCCCCCEE
Confidence 5688999999985 57889999999999999999 89999999887554332 21 113456999999999999
Q ss_pred EEE
Q 032671 85 IAA 87 (136)
Q Consensus 85 lv~ 87 (136)
++.
T Consensus 76 ~l~ 78 (80)
T 2pjh_A 76 FLF 78 (80)
T ss_dssp EC-
T ss_pred EEe
Confidence 753
No 100
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=98.50 E-value=6.7e-07 Score=62.13 Aligned_cols=75 Identities=19% Similarity=0.204 Sum_probs=66.9
Q ss_pred CCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEE
Q 032671 6 ISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVI 85 (136)
Q Consensus 6 ~~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIl 85 (136)
.++.|+|+|+...+...+.+.|..++++.-|..+.++ +.+++++..|++|.|..|..+.| ..++++++||+|-
T Consensus 22 ~~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~--~~g~~~~~vrF~FDG~rI~~~~T-----P~dLdMEDgD~ID 94 (97)
T 2jxx_A 22 TSQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEE--AMGLSGRKLSFFFDGTKLSGREL-----PADLGMESGDLIE 94 (97)
T ss_dssp SCSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHH--HTTCSSSCCEEEETTEECCSCSC-----HHHHTCCTTEEEE
T ss_pred CCCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHH--HHCCCcccEEEEECCEEcCCCCC-----HHHcCCCCCCEEE
Confidence 4577999999888854477899999999999999998 99999999999999999999888 9999999999995
Q ss_pred EE
Q 032671 86 AA 87 (136)
Q Consensus 86 v~ 87 (136)
|.
T Consensus 95 v~ 96 (97)
T 2jxx_A 95 VW 96 (97)
T ss_dssp EE
T ss_pred Ee
Confidence 43
No 101
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=98.50 E-value=2.7e-07 Score=71.76 Aligned_cols=73 Identities=15% Similarity=0.278 Sum_probs=64.2
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032671 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA 86 (136)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv 86 (136)
++.|+|+|+. .+.. +.+.|..++++..|+..+++ +.|+++..+|++|.|+.|.+++| ..++++.+||+|-|
T Consensus 55 ~e~InLKVk~-dG~e-V~FKIKrtTpL~KLmeAYcE--RqGL~~~sIRFLFDGqRI~~ddT-----PeDLdMEDGDtIDV 125 (207)
T 3tix_A 55 ETHINLKVSD-GSSE-IFFKIKKTTPLRRLMEAFAK--RQGKEMDSLTFLYDGIEIQADQT-----PEDLDMEDNDIIEA 125 (207)
T ss_dssp CCEEEEEEEC-SSCE-EEEEEETTSCTHHHHHHHHH--HTTCCGGGSCEEETTEECCSSCC-----TTTTTCCTTEEEEE
T ss_pred CCcEEEEEec-CCCE-EEEEEccCChHHHHHHHHHH--HhCCCcccEEEEECCeecCCCCC-----HHHcCCCCCCEEEE
Confidence 4568888874 5544 78999999999999999998 99999999999999999999988 99999999999954
Q ss_pred Ee
Q 032671 87 AV 88 (136)
Q Consensus 87 ~~ 88 (136)
+.
T Consensus 126 ~l 127 (207)
T 3tix_A 126 HR 127 (207)
T ss_dssp CC
T ss_pred EE
Confidence 44
No 102
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=98.47 E-value=1.1e-06 Score=59.25 Aligned_cols=71 Identities=24% Similarity=0.381 Sum_probs=65.5
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCC-ceEEEecCeecCCCCCCCCCCccccCCCCCCEE-E
Q 032671 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIE-NLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-I 85 (136)
Q Consensus 8 ~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~-~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI-l 85 (136)
..|++-+++.++.. +.+.|+++++|.+|-++... +.+|+++ ..||.|-|..|..+++ +.+|++.|||-| +
T Consensus 8 ~~~~~~~~~~~~~d-l~f~I~~~t~v~kLi~ayc~--~~~I~~~~~IrllFDGdRLdp~~t-----p~DlemeD~D~IDv 79 (82)
T 3goe_A 8 KLITLLLRSSKSED-LRLSIPVDFTVKDLIKRYCT--EVKISFHERIRLEFEGEWLDPNDQ-----VQSTELEDEDQVSV 79 (82)
T ss_dssp CEEEEEEEESSSCC-EEEEEETTSBHHHHHHHHHH--HHTCCCCTTCEEEETTEECCTTSB-----GGGSSCCTTCEEEE
T ss_pred HHHHHhhhccCCCC-eEEEecCCCCHHHHHHHHHH--HcCCCcCceEEEEEcCcccCccCC-----hhhhCCcCCceeee
Confidence 56889999988877 88999999999999999988 9999999 8999999999999989 999999999999 5
Q ss_pred E
Q 032671 86 A 86 (136)
Q Consensus 86 v 86 (136)
+
T Consensus 80 m 80 (82)
T 3goe_A 80 V 80 (82)
T ss_dssp E
T ss_pred e
Confidence 4
No 103
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=98.30 E-value=9.3e-07 Score=61.24 Aligned_cols=52 Identities=15% Similarity=0.239 Sum_probs=45.9
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecC
Q 032671 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLD 63 (136)
Q Consensus 10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~ 63 (136)
.-|.|-+......+.+.+.++.||..||++|++ ++|||+++|+|+|.|+.+.
T Consensus 13 kvvHVf~~~~a~~h~v~I~~~etv~~~ke~V~e--qTgIp~~~Q~LL~eg~~l~ 64 (94)
T 4efo_A 13 MVIHVFSLQQMTAHKIYIHSYNTATIFHELVYK--QTKIISSNQELIYEGRRLV 64 (94)
T ss_dssp EEEEEEETTTTEEEEEEEETTCBHHHHHHHHHH--HHCCCGGGEEEEETTEEEC
T ss_pred eeEEEEEcccceEEEEEeccchHHHHHHHHHHH--HhCCCHHHHHHHhCCCccc
Confidence 446677777776688999999999999999999 9999999999999998875
No 104
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=98.25 E-value=1.2e-07 Score=74.56 Aligned_cols=72 Identities=15% Similarity=0.297 Sum_probs=0.0
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-E
Q 032671 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-I 85 (136)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI-l 85 (136)
++.|+|+| +..+.. +.+.|..++.+..|++.+++ +.|++++.+|++|.|+.+.+++| ..++++++||+| +
T Consensus 19 ~e~InLKV-~qdGse-V~FKIKrtTpL~KLM~AYcE--RqGLs~~siRFLFDGqRI~dddT-----PadL~MEDGDtIDV 89 (227)
T 3v7o_A 19 ETHINLKV-SDGSSE-IFFKIKKTTPLRRLMEAFAK--RQGKEMDSLRFLYDGIRIQADQT-----PEDLDMEDNDIIEA 89 (227)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCeEEEEE-eCCCCE-EEEEEccCChHHHHHHHHHH--HhCCCccceEEEECCEecCCCCC-----HHHcCCCCCCEEEE
Confidence 56688888 666654 77899999999999999988 99999999999999999999988 999999999999 4
Q ss_pred EE
Q 032671 86 AA 87 (136)
Q Consensus 86 v~ 87 (136)
+.
T Consensus 90 ~l 91 (227)
T 3v7o_A 90 HR 91 (227)
T ss_dssp --
T ss_pred Ee
Confidence 43
No 105
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=98.03 E-value=1.4e-05 Score=61.74 Aligned_cols=71 Identities=17% Similarity=0.321 Sum_probs=63.3
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032671 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA 86 (136)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv 86 (136)
++.|.|+|++ .++. +.+.+..++.+.-|+++.++ +.|++++++|++|.|+.+.++++ -.++++.++|+|-+
T Consensus 19 ~~~i~ikv~~-~~~~-v~~~i~~~~~l~kl~~~y~~--~~g~~~~~~~f~fdG~~i~~~~T-----pk~L~~ed~d~I~~ 89 (209)
T 3uf8_A 19 ETHINLKVSD-GSSE-IFFKIKKTTPLRRLMEAFAK--RQGKEMDSLRFLYDGIRIQADQT-----PEDLDMEDNDIIEA 89 (209)
T ss_dssp CSEEEEEEEC-SSCE-EEEEEETTSCTHHHHHHHHH--HHTCCGGGCEEEETTEECCTTCC-----TTTTTCCTTEEEEE
T ss_pred CCcEEEEEEc-CCCE-EEEEEeeCCHHHHHHHHHHH--hhCCChheEEEEECCEeccCCCC-----hHHhhhcccccchh
Confidence 5778999987 4443 77899999999999999999 99999999999999999999888 99999999999933
No 106
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=97.94 E-value=5e-05 Score=52.66 Aligned_cols=72 Identities=15% Similarity=0.166 Sum_probs=62.4
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032671 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA 86 (136)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv 86 (136)
+..|.|+|+. .+.. ..+.+-.++-..-|..+.++ +.|++++..|++|.|..+..+.| -.++++.+||+|=+
T Consensus 19 ~~~IniKV~~-~g~e-v~FkIK~tt~l~KL~~aYc~--r~gv~~~sirFlfDG~rI~~~~T-----P~~L~meD~DiID~ 89 (95)
T 2l76_A 19 PRLFPLKIRC-RADL-VRLPLRMSEPLQSVVDHMAT--HLGVSPSRILLLFGETELSPTAT-----PRTLKLGVADIIDC 89 (95)
T ss_dssp CCCEEEEEEC-SSSE-EEEEECSSSCTHHHHHHHHH--HHTSCGGGEEEEETTEECCTTSC-----HHHHTCCSSCEEEE
T ss_pred CCeEEEEEEc-CCcE-EEEEEecCChHHHHHHHHHh--hcCCChhhEEEEECCcCCCCCCC-----HhHcCCCCCCEEEE
Confidence 4558899995 4433 66889999999999999988 99999999999999999999999 99999999999933
Q ss_pred E
Q 032671 87 A 87 (136)
Q Consensus 87 ~ 87 (136)
+
T Consensus 90 ~ 90 (95)
T 2l76_A 90 V 90 (95)
T ss_dssp E
T ss_pred E
Confidence 3
No 107
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=97.89 E-value=1.7e-06 Score=72.45 Aligned_cols=73 Identities=15% Similarity=0.292 Sum_probs=0.0
Q ss_pred CCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-
Q 032671 6 ISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV- 84 (136)
Q Consensus 6 ~~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI- 84 (136)
.++.|+|+|+. .+.. +.+.|..++++..|+.+.++ +.|++++.+|++|.|+.+.+++| ..++++++||+|
T Consensus 18 ~~~~I~LKV~~-~g~~-v~FkIk~~t~l~kLm~aY~~--r~G~~~~~~rFlFdG~rI~~~~T-----P~~L~MEDgD~Id 88 (360)
T 3ix6_A 18 PETHINLKVSD-GSSE-IFFKIKKTTPLRRLMEAFAK--RQGKEMDSLRFLYDGIRIQADQT-----PEDLDMEDNDIIE 88 (360)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCeEEEEEec-CCcE-EEEEEecCChHHHHHHHHHH--HhCCCcceEEEEECCeECCCCCC-----hHHcCCCccchhh
Confidence 35678888887 4433 67899999999999999988 99999999999999999999988 999999999999
Q ss_pred EEE
Q 032671 85 IAA 87 (136)
Q Consensus 85 lv~ 87 (136)
++.
T Consensus 89 v~~ 91 (360)
T 3ix6_A 89 AHR 91 (360)
T ss_dssp ---
T ss_pred hhh
Confidence 444
No 108
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=97.74 E-value=4e-06 Score=69.58 Aligned_cols=70 Identities=16% Similarity=0.313 Sum_probs=0.0
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEE
Q 032671 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVI 85 (136)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIl 85 (136)
++.|.|+|++ .+.. +.+.|..++++.-|++..++ +.|+++..+|++|.|+.|.+++| ..++++++|++|-
T Consensus 28 ~~~i~lkv~~-~~~~-~~~~i~~~~~~~~l~~~y~~--~~g~~~~~~~f~f~G~~i~~~~T-----p~~l~med~d~i~ 97 (389)
T 4da1_A 28 ETHINLKVSD-GSSE-IFFKIKKTTPLRRLMEAFAK--RQGKEMDSLRFLYDGIRIQADQA-----PEDLDMEDNDIIE 97 (389)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred CCcEEEEEec-CCcE-EEEEECCCChHHHHHHHHHH--HhCCCcceEEEEECCEEcCCCCC-----HHHcCCCCCCEee
Confidence 4568888887 4433 67899999999999999998 99999999999999999999988 9999999999993
No 109
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=97.48 E-value=0.00015 Score=48.80 Aligned_cols=69 Identities=19% Similarity=0.225 Sum_probs=56.0
Q ss_pred ceEEEEEe--CCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCC-----CceEEEecCeecCCCCCCCCCCccccCCCCC
Q 032671 9 SVEITVKT--IGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPI-----ENLRLVFRGKVLDDTQDDDDRDDVYLQLSNG 81 (136)
Q Consensus 9 ~m~I~VKt--~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~-----~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG 81 (136)
.|.|+|-. -.++. +.+.+|...|+.+|.+.+.+ ..+++. -..|..-+|..|.++.. |.+|+|++|
T Consensus 4 yI~ITidl~~y~~~~-~DLRIP~~~tvK~Li~~l~e--a~~l~~~~~~~~~irv~NK~~~L~~~~~-----L~d~~ItnG 75 (81)
T 2bps_A 4 YIDITIDLKHYNGSV-FDLRLSDYHPVKKVIDIAWQ--AQSVSMPPREGHWIRVVNKDKVFSGECK-----LSDCGITNG 75 (81)
T ss_dssp EEEEEEECTTTTCCE-EEEEEETTSBTTHHHHHHHH--HSCCCSCCCTTCEEEEGGGTEEEETTSB-----TGGGTCCTT
T ss_pred EEEEEEEeeccCCce-EEEECCCchhHHHHHHHHHH--HhCCCcCCCCCCEEEEecCCEEEcCCCE-----EeeCCcCCC
Confidence 46777775 34444 78999999999999999999 555443 23788899999999988 999999999
Q ss_pred CEEE
Q 032671 82 DSVI 85 (136)
Q Consensus 82 ~tIl 85 (136)
|.|-
T Consensus 76 D~Le 79 (81)
T 2bps_A 76 DRLE 79 (81)
T ss_dssp CEEE
T ss_pred CEEE
Confidence 9984
No 110
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=97.40 E-value=0.0016 Score=43.00 Aligned_cols=77 Identities=10% Similarity=0.205 Sum_probs=60.2
Q ss_pred CCCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEE--ecCeecCCCCCCCCCCccccCCCCCC
Q 032671 5 EISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLV--FRGKVLDDTQDDDDRDDVYLQLSNGD 82 (136)
Q Consensus 5 e~~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI--~~GK~L~D~~t~d~~~L~~~~I~dG~ 82 (136)
+.....+|.||..+|+. +.-..+.+.||.+|..-|.. .+.++...+|+ |-.|.+... +.+.+|.++||.++.
T Consensus 3 ~~~~~~~i~iRlpdG~r-~~~~F~~~~tl~~v~~fv~~---~~~~~~~f~L~t~fPrk~l~~~--d~~~TL~e~gL~p~a 76 (84)
T 3qx1_A 3 HMEPVSKLRIRTPSGEF-LERRFLASNKLQIVFDFVAS---KGFPWDEYKLLSTFPRRDVTQL--DPNKSLLEVKLFPQE 76 (84)
T ss_dssp -CCCEEEEEEECTTSCE-EEEEEETTSBHHHHHHHHHH---TTCCTTTEEEECSSSCCBGGGS--CTTSBTTTTTCCSEE
T ss_pred CCCCeEEEEEECCCCCE-EEEEeCCCCCHHHHHHHHHH---cCCCCCCeEEEeCCCCCCCcCC--CCCCCHHHCCCCCCC
Confidence 45677899999999976 66788999999999999976 45778889998 557777411 123569999999999
Q ss_pred EEEEE
Q 032671 83 SVIAA 87 (136)
Q Consensus 83 tIlv~ 87 (136)
+|+|-
T Consensus 77 ~L~ve 81 (84)
T 3qx1_A 77 TLFLE 81 (84)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88764
No 111
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=97.34 E-value=0.00049 Score=47.16 Aligned_cols=76 Identities=13% Similarity=0.149 Sum_probs=62.5
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EE
Q 032671 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IA 86 (136)
Q Consensus 8 ~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI-lv 86 (136)
.-|.|.|-..++.. ..|.|.++.|+.++=+...+ ++|+.+++-.|-|++|.|+=+.. +.-.||-+|.+| ++
T Consensus 8 ~~m~v~Vl~~n~rr-~~VKvtp~t~L~~VL~eaC~--K~gl~~~~~~Lkh~~k~lDLSlp-----fRlsgLpnnAkLELv 79 (90)
T 2al3_A 8 GGSAVSVLAPNGRR-HTVKVTPSTVLLQVLEDTCR--RQDFNPSEYDLKFQRTVLDLSLQ-----WRFANLPNNAKLEMV 79 (90)
T ss_dssp --CCEEEECTTSCE-EEECCCTTSBHHHHHHHHHH--HTTCCGGGCEEEETTEEESSSCB-----HHHHCCCSSCEEEEE
T ss_pred CccEEEEEcCCCcE-EEEEECCCCCHHHHHHHHHH--HhCCChhhCeEEeCCEeccccce-----eEecCCCCCCEEEEE
Confidence 34689999998876 88999999999997555555 79999999999999999987777 889999999999 55
Q ss_pred EecCC
Q 032671 87 AVKPK 91 (136)
Q Consensus 87 ~~~p~ 91 (136)
.....
T Consensus 80 ~~s~s 84 (90)
T 2al3_A 80 PVSRS 84 (90)
T ss_dssp CSSSC
T ss_pred EccCC
Confidence 44433
No 112
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=97.06 E-value=0.00057 Score=49.55 Aligned_cols=70 Identities=11% Similarity=0.114 Sum_probs=52.6
Q ss_pred EEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCC-------------------------------------ce
Q 032671 11 EITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIE-------------------------------------NL 53 (136)
Q Consensus 11 ~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~-------------------------------------~Q 53 (136)
.|+|+.+++.. .++.|+.+.||.+++..|.. +.|++.. +|
T Consensus 13 ~LkV~llDg~~-ktl~VD~S~~V~~lv~~Ic~--kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~ 89 (128)
T 2kc2_A 13 PLKIRMLDGTV-KTIMVDDSKTVTDMLMTICA--RIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQ 89 (128)
T ss_dssp EEEEECTTSCE-EEEEEEECSSHHHHHHHHHH--HHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCC
T ss_pred cEEEEcCCCCE-EEEEeCCCcCHHHHHHHHHH--HhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHH
Confidence 58999999976 88999999999999999988 8888743 23
Q ss_pred EEEe--cCeecCCCCCCCCCCccccCCCCCCEEEEEe
Q 032671 54 RLVF--RGKVLDDTQDDDDRDDVYLQLSNGDSVIAAV 88 (136)
Q Consensus 54 RLI~--~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~~ 88 (136)
||-. .+.-|.+ +.+|.++||.++++|++.-
T Consensus 90 kL~~dd~~~WLD~-----srtL~EQGI~e~~tllLRr 121 (128)
T 2kc2_A 90 KLHTDDELNWLDH-----GRTLREQGVEEHETLLLRR 121 (128)
T ss_dssp SCCCSSSEEEECS-----SSCHHHHTCCTTSEEEEEE
T ss_pred HhcccCCCCcccC-----CCcHHHcCCCCCCEEEEEE
Confidence 3311 1233333 3559999999999997653
No 113
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=96.98 E-value=0.0064 Score=42.30 Aligned_cols=83 Identities=18% Similarity=0.190 Sum_probs=63.2
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEE--ecCeecCCCCCCCCCCccccCCCCCCEE
Q 032671 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLV--FRGKVLDDTQDDDDRDDVYLQLSNGDSV 84 (136)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI--~~GK~L~D~~t~d~~~L~~~~I~dG~tI 84 (136)
....+|.||..+|.. +.-..+.+.||.+|.+-|.. ..+.+.....|+ |--|.+.++ +.+++|.++||.+..+|
T Consensus 11 ~~~t~IqIRlpdG~r-l~~rF~~~~tl~~v~~fV~~--~~~~~~~~f~L~t~fPrk~l~~~--d~~~TL~elgL~psa~L 85 (109)
T 2dzk_A 11 STIARIQFRLPDGSS-FTNQFPSDAPLEEARQFAAQ--TVGNTYGNFSLATMFPRREFTRE--DYKRRLLDLELAPSASV 85 (109)
T ss_dssp SCCEEEEEECSSSCE-EEEEECTTSBHHHHHHHHHH--HHTTSSCSCEEECSSSCCBCCTT--TTTSBTGGGTCSSEEEE
T ss_pred CCcEEEEEECCCCCE-EEEEeCCCCCHHHHHHHHHh--ccCCCCCceEEEcCCCCcCCccc--ccCCCHHHCCCCCceEE
Confidence 456999999999976 77799999999999999987 556666778887 456667532 12466999999999888
Q ss_pred EEEecCCCCC
Q 032671 85 IAAVKPKPPP 94 (136)
Q Consensus 85 lv~~~p~~~~ 94 (136)
+|....++.+
T Consensus 86 ~v~~~~~~~~ 95 (109)
T 2dzk_A 86 VLLPAGRPAT 95 (109)
T ss_dssp EEECCSSCCC
T ss_pred EEEECcCCcc
Confidence 7766554433
No 114
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=96.25 E-value=0.017 Score=41.09 Aligned_cols=75 Identities=16% Similarity=0.216 Sum_probs=59.7
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEE--ecCeecCCCCCCCCCCccccCCCCCCEE
Q 032671 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLV--FRGKVLDDTQDDDDRDDVYLQLSNGDSV 84 (136)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI--~~GK~L~D~~t~d~~~L~~~~I~dG~tI 84 (136)
....+|.||..+|.. +.-..+.+.||.+|..-|.. . ++++....|+ |-.|.|..+ +.+.+|.++||.+..+|
T Consensus 41 ~~~t~IqIRlPdG~r-l~~rF~~~~tl~~V~~fV~~--~-~~~~~~F~L~t~fPrk~l~~~--d~~~TL~e~gL~psa~L 114 (124)
T 1wj4_A 41 GPKAQLMLRYPDGKR-EQITLPEQAKLLALVKHVQS--K-GYPNERFELLTNFPRRKLSHL--DYDITLQEAGLCPQETV 114 (124)
T ss_dssp SCEEEEEEECTTSCE-EEEEEETTSCHHHHHHHHHH--H-HCCTTTEEEECSSSCCEETSS--CSSSCTTTTTCCSSBCC
T ss_pred CCcEEEEEECCCCCE-EEEEeCCCCCHHHHHHHHHh--c-CCCCCCeEEecCCCCcCCccC--CCCCCHHHCCCCCceEE
Confidence 567999999999976 77789999999999999977 4 7777888887 558888421 12356999999998888
Q ss_pred EEE
Q 032671 85 IAA 87 (136)
Q Consensus 85 lv~ 87 (136)
+|.
T Consensus 115 iv~ 117 (124)
T 1wj4_A 115 FVQ 117 (124)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
No 115
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=96.00 E-value=0.028 Score=38.87 Aligned_cols=75 Identities=11% Similarity=0.046 Sum_probs=58.7
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEE--ecCeecCCCCCCCCCCccccCCCCCCEE
Q 032671 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLV--FRGKVLDDTQDDDDRDDVYLQLSNGDSV 84 (136)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI--~~GK~L~D~~t~d~~~L~~~~I~dG~tI 84 (136)
....+|.||..+|+. +.-..+.+.||.+|..-|.. . +..+...+|+ |-.|.|..+ .+.+|.++||.+..+|
T Consensus 21 ~~~~~IqiRlpdG~r-~~rrF~~~~tl~~v~~fv~~--~-~~~~~~f~L~t~fPrk~l~~d---~~~TL~e~gL~p~a~L 93 (109)
T 2cr5_A 21 EEVVTVALRCPNGRV-LRRRFFKSWNSQVLLDWMMK--V-GYHKSLYRLSTSFPRRALEVE---GGSSLEDIGITVDTVL 93 (109)
T ss_dssp SSEEEEEEECTTSCE-EEEEEESSSBTHHHHHHHHH--H-TCCTTTEEEECSSSCCBCCCC---SSCBHHHHTCSSCEEE
T ss_pred CCcEEEEEECCCCCE-EEEEeCCCCCHHHHHHHHHh--c-CCCCCCeEEEeCCCCcCCCCC---CCCCHHHcCCCCCeEE
Confidence 457999999999976 66688899999999998875 3 5567788887 557788532 2366999999998888
Q ss_pred EEEe
Q 032671 85 IAAV 88 (136)
Q Consensus 85 lv~~ 88 (136)
+|..
T Consensus 94 ~Ve~ 97 (109)
T 2cr5_A 94 NVEE 97 (109)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 6643
No 116
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=95.40 E-value=0.12 Score=32.85 Aligned_cols=65 Identities=15% Similarity=0.351 Sum_probs=43.1
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCC--CceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032671 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPI--ENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA 86 (136)
Q Consensus 10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~--~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv 86 (136)
|+|+|+....-..-.+++ ...||.+|.+.+.. ..++.. ....+..+|+...+.. .-|++||.|-+
T Consensus 1 M~v~V~~fa~l~~~~~e~-~~~tv~~ll~~L~~--~~~l~~~l~~~~vavN~~~v~~~~---------~~l~~gDeV~i 67 (74)
T 3rpf_C 1 MMVEVRFFGPIKEENFFI-KANDLKELRAILQE--KEGLKEWLGVCAIALNDHLIDNLN---------TPLKDGDVISL 67 (74)
T ss_dssp CEEEEEECTTCCCCCEEE-ECSSHHHHHHHHHT--CTTTTTTTTTCEEEESSSEECCTT---------CCCCTTCEEEE
T ss_pred CEEEEEEEeecceeEEee-CCCcHHHHHHHHHH--CcCHHHHhhccEEEECCEEcCCCC---------cCCCCCCEEEE
Confidence 567888665544334677 66899999999976 443322 4456667777754333 36999999943
No 117
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=95.25 E-value=0.064 Score=34.79 Aligned_cols=59 Identities=22% Similarity=0.356 Sum_probs=44.1
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EE
Q 032671 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IA 86 (136)
Q Consensus 10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI-lv 86 (136)
|+|+||..+. ....++++..+|+.+| +. ..+++++.--...+|+.+..+. +.+||+| ++
T Consensus 1 M~v~Vkl~g~-~~~~~ev~~g~Tv~dL---L~---~Lgl~~~~VvV~vNG~~v~~d~-----------~l~GD~VeIv 60 (74)
T 2l32_A 1 MNVTVEVVGE-ETSEVAVDDDGTYADL---VR---AVDLSPHEVTVLVDGRPVPEDQ-----------SVEVDRVKVL 60 (74)
T ss_dssp CEEEEECSSS-SEEEEECSTTCSHHHH---HH---TTCCCSSCCCEECCCCCCCTTS-----------SSCCCCEEEC
T ss_pred CEEEEEEeCc-cceeEEcCCCCcHHHH---HH---HcCCCcceEEEEECCEECCHHH-----------CCCCCEEEEE
Confidence 6788887744 3366899999999998 43 5889999987778899886433 2359998 44
No 118
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=95.17 E-value=0.088 Score=37.38 Aligned_cols=72 Identities=15% Similarity=0.197 Sum_probs=55.0
Q ss_pred CCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEE--ecCeecCCCCCCCCCCccccCCCCCCE
Q 032671 6 ISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLV--FRGKVLDDTQDDDDRDDVYLQLSNGDS 83 (136)
Q Consensus 6 ~~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI--~~GK~L~D~~t~d~~~L~~~~I~dG~t 83 (136)
.....+|.||..+|.. +.-..+.+.||.+|..-|.. ...++......|+ |-.|.+.|+ +.+|.++||.+...
T Consensus 49 ~~~~t~IqIRlpdG~r-l~~rF~~~~tl~~v~~fV~~-~~~~~~~~~f~L~t~fPrk~l~d~----~~TL~eagL~psav 122 (127)
T 1s3s_G 49 AEPTTNIQIRLADGGR-LVQKFNHSHRISDIRLFIVD-ARPAMAATSFVLMTTFPNKELADE----NQTLKEANLLNAVI 122 (127)
T ss_dssp TSCCCCEEEEETTTTE-EEEECCSSCBHHHHHHHHHH-HCSGGGTSCEEEEETTTTEECCST----TCBHHHHTCSSCEE
T ss_pred CCCcEEEEEECCCCCE-EEEEeCCCCCHHHHHHHHHH-hCcCCCCCCeEEecCCCCCCCCCC----CCcHHHCCCcCceE
Confidence 3467899999999976 77789999999999999976 1234556778887 557788642 35699999998433
No 119
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=95.12 E-value=0.23 Score=35.02 Aligned_cols=80 Identities=11% Similarity=0.181 Sum_probs=51.7
Q ss_pred CCceEEEEEeCCC-CCcEEEEecCCCcHHHHHHHHHhccCCCCC------CCceEEEec----CeecCCCCCCC------
Q 032671 7 SESVEITVKTIGP-APPSRLSVSSPIKVRDLRKLIATSSANHLP------IENLRLVFR----GKVLDDTQDDD------ 69 (136)
Q Consensus 7 ~~~m~I~VKt~~~-~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~------~~~QRLI~~----GK~L~D~~t~d------ 69 (136)
-.+++|++-...+ ..++.+.|-.-.||.++|++|-.+.-.|.| ++...|-++ |+.|.|....-
T Consensus 9 ~~~ltl~v~~~~~~~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~w 88 (111)
T 4e71_A 9 YAPLTVSVIVQDEGVDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRW 88 (111)
T ss_dssp CCEEEEEEEETTSCCCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---C
T ss_pred eEEEEEEEEecCCCCCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcc
Confidence 3567777765432 233667777778999999999875445544 456778774 45565533210
Q ss_pred --CCCccccCCCCCCEE-EE
Q 032671 70 --DRDDVYLQLSNGDSV-IA 86 (136)
Q Consensus 70 --~~~L~~~~I~dG~tI-lv 86 (136)
=-||..|+|.||.+| ++
T Consensus 89 krLNTL~HY~V~dgatl~l~ 108 (111)
T 4e71_A 89 KRVNTLMHYNVRDGATLILS 108 (111)
T ss_dssp CCCCBHHHHTCCTTCEEEEE
T ss_pred eEecchhhcCCCCCCEEEEE
Confidence 046889999999999 54
No 120
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=94.28 E-value=0.22 Score=38.55 Aligned_cols=62 Identities=16% Similarity=0.126 Sum_probs=47.0
Q ss_pred EEEecCCCcHHHHHHHHHhccCCCCCCC-ceEEEe-cCe----ecCCCCCCCCCCccccCCCCCCEEEEEecCC
Q 032671 24 RLSVSSPIKVRDLRKLIATSSANHLPIE-NLRLVF-RGK----VLDDTQDDDDRDDVYLQLSNGDSVIAAVKPK 91 (136)
Q Consensus 24 ~v~v~~~~TV~eLK~~Ia~~~~~gi~~~-~QRLI~-~GK----~L~D~~t~d~~~L~~~~I~dG~tIlv~~~p~ 91 (136)
++.++...||.+|++.+.+ .++++++ ..||-. .+. .|.|. +.+|.+++|.+|+.|++-.+.+
T Consensus 155 ~~~~Sk~~ti~~l~~~~~~--~~~i~~~~~~RLW~~~~~~~~~~L~~~----~~tl~d~~L~~~Q~illE~r~~ 222 (231)
T 3jyu_A 155 SCHFSKADTIATIEKEMRK--LFNIPAERETRLWNKYMSNTYEQLSKL----DNTIQDAGLYQGQVLVIEPQNE 222 (231)
T ss_dssp EEEECTTCBHHHHHHHHHH--HTTCCTTSCEEEEECSSSSSCEECCCT----TSBTTTTTCCTTEEEEEEECCT
T ss_pred EEEecccCcHHHHHHHHHH--HhCCCCCCeEEEEEecCCCCHhhhcCC----CCCHHHhCCCCCCEEEEEEecC
Confidence 3566888999999999988 9999998 588853 322 34432 2459999999999998876643
No 121
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=94.10 E-value=0.29 Score=35.71 Aligned_cols=80 Identities=11% Similarity=0.159 Sum_probs=52.3
Q ss_pred CCceEEEEEeCCC-----CCcEEEEecCCCcHHHHHHHHHhccCCCCC------CCceEEEe----cCee-cCCCCCCCC
Q 032671 7 SESVEITVKTIGP-----APPSRLSVSSPIKVRDLRKLIATSSANHLP------IENLRLVF----RGKV-LDDTQDDDD 70 (136)
Q Consensus 7 ~~~m~I~VKt~~~-----~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~------~~~QRLI~----~GK~-L~D~~t~d~ 70 (136)
-.+++|+|-...+ ...+.+.|-.=.||.++|++|-.+.-.|.| ++..-|-+ .|+. |.|....-.
T Consensus 22 y~~ltl~v~~~~~~~~~~~~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~ 101 (138)
T 2r2o_A 22 YRPLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSE 101 (138)
T ss_dssp CCEEEEEEEEC-------CCCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCC
T ss_pred eEEEEEEEEccCCcccccCCceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCccc
Confidence 3567777765422 233678888888999999999874445554 44566765 2433 655432100
Q ss_pred --------CCccccCCCCCCEE-EE
Q 032671 71 --------RDDVYLQLSNGDSV-IA 86 (136)
Q Consensus 71 --------~~L~~~~I~dG~tI-lv 86 (136)
-||..|+|.+|.+| ++
T Consensus 102 ~~~~wkrLNTL~HY~V~Dga~l~l~ 126 (138)
T 2r2o_A 102 VQGLWRRLNTLQHYKVPDGATVALV 126 (138)
T ss_dssp EETTEEECCBHHHHTCCTTCEEEEE
T ss_pred ccCCceeecchhccCCCCCCEEEEE
Confidence 26999999999999 54
No 122
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=94.03 E-value=0.42 Score=30.10 Aligned_cols=60 Identities=22% Similarity=0.413 Sum_probs=44.6
Q ss_pred ceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EE
Q 032671 9 SVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IA 86 (136)
Q Consensus 9 ~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI-lv 86 (136)
.|+|+|.-..+. ..++++...|+.+|.+.+ ++++...-+...|..+..+. -|++||.| ++
T Consensus 4 ~m~i~vNg~~~~--~~~~~~~~~tv~~Ll~~l------~~~~~~v~vavN~~~v~~~~----------~L~~gD~V~ii 64 (70)
T 1ryj_A 4 GMKFTVITDDGK--KILESGAPRRIKDVLGEL------EIPIETVVVKKNGQIVIDEE----------EIFDGDIIEVI 64 (70)
T ss_dssp CEEEEEEETTEE--EEEEESSCCBHHHHHHHT------TCCTTTEEEEETTEECCTTS----------BCCTTCEEEEE
T ss_pred eEEEEEeCccCc--eeEECCCCCcHHHHHHHh------CCCCCCEEEEECCEECCCcc----------cCCCCCEEEEE
Confidence 488888775543 357888889999998765 45567777889999986432 58999999 44
No 123
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=93.97 E-value=0.13 Score=39.38 Aligned_cols=62 Identities=19% Similarity=0.187 Sum_probs=47.2
Q ss_pred EEEEecCCCcHHHHHHHHHhccCCCCCCC-ceEEE--ec-Ce--ecCCCCCCCCCCccccCCCCCCEEEEEecC
Q 032671 23 SRLSVSSPIKVRDLRKLIATSSANHLPIE-NLRLV--FR-GK--VLDDTQDDDDRDDVYLQLSNGDSVIAAVKP 90 (136)
Q Consensus 23 ~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~-~QRLI--~~-GK--~L~D~~t~d~~~L~~~~I~dG~tIlv~~~p 90 (136)
.++.++...||.+|++.+.+ .++++++ ..||- |. ++ .|.|. +.+|.+++|.+|+.|++-.+.
T Consensus 142 ~~~~~Sk~~ti~~l~~~~~~--~~~i~~~~~~RlW~~~~~~~~~~L~~~----~~tl~~~~l~~~Q~illE~r~ 209 (217)
T 4a3p_A 142 VTRRFSKADTIDTIEKEIRK--IFSIPDEKETRLWNKYMSNTFEPLNKP----DSTIQDAGLYQGQVLVIEQKN 209 (217)
T ss_dssp EEEEECTTSBHHHHHHHHHH--HTTCCTTSCEEEEEEEETTEEEECCCT----TSBHHHHTCCTTCEEEEEECC
T ss_pred eEEEEcccchHHHHHHHHHH--HhCCCCCCceEEEEecCCCCeeecCCC----CCCHHHhCCCCCCEEEEEEec
Confidence 44678889999999999988 9999997 57774 32 22 34432 245999999999999876653
No 124
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=93.96 E-value=0.16 Score=33.98 Aligned_cols=48 Identities=13% Similarity=0.249 Sum_probs=40.9
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCe
Q 032671 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGK 60 (136)
Q Consensus 8 ~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK 60 (136)
..|+|+|... .++.+.++++.+..+|.++|++ +.+++++..+|-|+-.
T Consensus 4 ~~~~VKV~~~---~tvairvp~~~~y~~L~~~l~~--kL~l~~~~~~LsYk~~ 51 (83)
T 1oey_A 4 MAYTLKVHYK---YTVVMKTQPGLPYSQVRDMVSK--KLELRLEHTKLSYRPR 51 (83)
T ss_dssp SCEEEEEESS---SEEEEEECTTCCHHHHHHHHHH--HTTCCGGGCCEEECCT
T ss_pred CcEEEEEEEE---EEEEEECCCCCCHHHHHHHHHH--HhCCCcceeEEEeeCC
Confidence 4567777764 4578999999999999999999 9999999999999864
No 125
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=93.41 E-value=0.55 Score=33.76 Aligned_cols=80 Identities=19% Similarity=0.218 Sum_probs=49.6
Q ss_pred CceEEEEEe---CCC-----CCcEEEEecCCCcHHHHHHHHHhccC--CCCC----CCceEEEec-C---eecCCCCCCC
Q 032671 8 ESVEITVKT---IGP-----APPSRLSVSSPIKVRDLRKLIATSSA--NHLP----IENLRLVFR-G---KVLDDTQDDD 69 (136)
Q Consensus 8 ~~m~I~VKt---~~~-----~~~~~v~v~~~~TV~eLK~~Ia~~~~--~gi~----~~~QRLI~~-G---K~L~D~~t~d 69 (136)
.++++.+-. ..+ ...+.+.|-.-.||.++|++|-.+.- .++| ++.+.|-++ | ..|.|....-
T Consensus 18 ~tLtL~vv~~~~~~~~~~~~~~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS 97 (126)
T 3kuz_A 18 GTVALNVVFEKIPENESADVCRNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSS 97 (126)
T ss_dssp CEEEEEEEECCCTTSSCSCSCCEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTC
T ss_pred EEEEEEEEeeccCCCcCcCcCCceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcc
Confidence 456777776 322 22356777777899999999876332 2443 455677663 3 3444432210
Q ss_pred ----C-----CCccccCCCCCCEE-EEE
Q 032671 70 ----D-----RDDVYLQLSNGDSV-IAA 87 (136)
Q Consensus 70 ----~-----~~L~~~~I~dG~tI-lv~ 87 (136)
. -||..|+|.+|.+| +++
T Consensus 98 ~~~e~~wkrLNTL~HY~V~Dgatlal~k 125 (126)
T 3kuz_A 98 VILEDGITKLNTIGHYEISNGSTIKVFK 125 (126)
T ss_dssp CBCTTSCBCCCBTGGGTCCTTCEEEEEE
T ss_pred eEecCCeeEeccccccCCCCCCEEEEee
Confidence 1 36889999999999 543
No 126
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=93.22 E-value=0.32 Score=39.46 Aligned_cols=83 Identities=18% Similarity=0.245 Sum_probs=59.3
Q ss_pred ceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCC----CCCCceEEEe------cCeecCCCCCCCCCCccccCC
Q 032671 9 SVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANH----LPIENLRLVF------RGKVLDDTQDDDDRDDVYLQL 78 (136)
Q Consensus 9 ~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~g----i~~~~QRLI~------~GK~L~D~~t~d~~~L~~~~I 78 (136)
.+.++|...+ .+-++..++++||.+.-..|.+ +.. .+.++--|.. +|.=|+++.+ |..|++
T Consensus 3 ~~~~~~~~~~--~~~~~~f~~~~~v~~~~~~i~e--~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~-----l~~y~~ 73 (371)
T 3ivf_A 3 ALSLKISIGN--VVKTMQFEPSTMVYDACRMIRE--RIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKA-----LDYYML 73 (371)
T ss_dssp CEEEEEEETT--EEEEEEECTTCBHHHHHHHHHT--TCGGGGSSCGGGEEEEECCSSGGGCEECCTTSB-----GGGGTC
T ss_pred cEEEEEEecc--eeEEEEECCCCCHHHHHHHHHH--hcccccCCCHHHCeEeccCCCCCcCEeccCCCC-----HHHhCC
Confidence 4566666652 2246899999999999999977 553 3577777776 4555877777 999999
Q ss_pred CCCCEEEEEecCCCCCcccccc
Q 032671 79 SNGDSVIAAVKPKPPPRHLRDD 100 (136)
Q Consensus 79 ~dG~tIlv~~~p~~~~~~~~~~ 100 (136)
++|+.|....++..-..++.||
T Consensus 74 ~~~~~l~~~~~~~~~~V~l~dg 95 (371)
T 3ivf_A 74 RNGDTMEYRKKQRPLKIRMLDG 95 (371)
T ss_dssp CTTCEEEEEECEEEEEEECTTS
T ss_pred CCCceeeccCceeEEEEECcCC
Confidence 9999996665554444444443
No 127
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=93.18 E-value=1.1 Score=31.12 Aligned_cols=74 Identities=20% Similarity=0.257 Sum_probs=41.9
Q ss_pred CceEEEEEeCCC-------CCcEEEEecC---CCcHHHHHHHHHhccCCCCCCCceEEEec-Ce------ecCCCCCCCC
Q 032671 8 ESVEITVKTIGP-------APPSRLSVSS---PIKVRDLRKLIATSSANHLPIENLRLVFR-GK------VLDDTQDDDD 70 (136)
Q Consensus 8 ~~m~I~VKt~~~-------~~~~~v~v~~---~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~-GK------~L~D~~t~d~ 70 (136)
++|+|+|+...+ .+.+.++++. .+||++|-..+.+ .+ |..+.+|+.. |+ ++-++.. =
T Consensus 10 ~~M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~--~~--~~~~~~lf~~~g~lr~~i~VlVN~~d--i 83 (114)
T 1wgk_A 10 APLCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKK--NL--LKERPELFIQGDSVRPGILVLINDAD--W 83 (114)
T ss_dssp CCEEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTT--TT--CCSCHHHHCCSSSCCSSEEEEESSSB--H
T ss_pred CCcEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHH--Hc--cchhHhhCccCCcccCCeEEEECCee--e
Confidence 679999995443 2235578883 3699999998865 43 3334333222 22 2222221 0
Q ss_pred C--CccccCCCCCCEEEEE
Q 032671 71 R--DDVYLQLSNGDSVIAA 87 (136)
Q Consensus 71 ~--~L~~~~I~dG~tIlv~ 87 (136)
. .=.++-|++||.|.++
T Consensus 84 ~~l~gldt~L~dGDeV~ii 102 (114)
T 1wgk_A 84 ELLGELDYQLQDQDSILFI 102 (114)
T ss_dssp HHHCTTTCBCCSSEEEEEE
T ss_pred eccCCcCcCCCCCCEEEEe
Confidence 0 0134679999998543
No 128
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=93.18 E-value=1.3 Score=31.79 Aligned_cols=78 Identities=14% Similarity=0.243 Sum_probs=50.4
Q ss_pred ceEEEEEeCC-CCCcEEEEecCCCcHHHHHHHHHhccCCCCC------CCceEEEec-C---e-ecCCCCCCCC------
Q 032671 9 SVEITVKTIG-PAPPSRLSVSSPIKVRDLRKLIATSSANHLP------IENLRLVFR-G---K-VLDDTQDDDD------ 70 (136)
Q Consensus 9 ~m~I~VKt~~-~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~------~~~QRLI~~-G---K-~L~D~~t~d~------ 70 (136)
++++++-..+ +...+.+.|-.-.||.++|++|-.+.-.+.| ++.+.|-++ | + .|.|....-.
T Consensus 4 ~ltl~~~~~~~~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~k 83 (127)
T 3h6n_A 4 PRNLNVSFQGCGMDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRK 83 (127)
T ss_dssp EEEEEEEEETSCCCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEE
T ss_pred EEEEEEEecCCCCCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCcee
Confidence 4555554322 2233667777778999999999875545554 456888773 3 3 2655322111
Q ss_pred --CCccccCCCCCCEE-EE
Q 032671 71 --RDDVYLQLSNGDSV-IA 86 (136)
Q Consensus 71 --~~L~~~~I~dG~tI-lv 86 (136)
-||..|+|.||.+| ++
T Consensus 84 rLNTL~HY~V~dgatv~l~ 102 (127)
T 3h6n_A 84 KLNTLAHYKIPEGASLAMS 102 (127)
T ss_dssp CCCBTTTTTCCTTCEEEEE
T ss_pred EeccccccCCCCCCEEEEE
Confidence 46899999999999 54
No 129
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=93.13 E-value=0.52 Score=31.39 Aligned_cols=67 Identities=21% Similarity=0.294 Sum_probs=44.0
Q ss_pred CceEEEEEeCC------CCCcEEEEecCCCcHHHHHHHHHhccCCC-C----------CCCceEEEecCeecCCCCCCCC
Q 032671 8 ESVEITVKTIG------PAPPSRLSVSSPIKVRDLRKLIATSSANH-L----------PIENLRLVFRGKVLDDTQDDDD 70 (136)
Q Consensus 8 ~~m~I~VKt~~------~~~~~~v~v~~~~TV~eLK~~Ia~~~~~g-i----------~~~~QRLI~~GK~L~D~~t~d~ 70 (136)
++|+|+|+.-. +.....++++...||.+|.+.+.. ... + ......+..+|+....
T Consensus 8 ~~~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~--~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~------ 79 (98)
T 1vjk_A 8 GSVKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKK--RHEKFKEEVFGEGYDEDADVNIAVNGRYVSW------ 79 (98)
T ss_dssp -CEEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHH--HCGGGGGSCBCSSSCTTSSBEEEETTBCCCT------
T ss_pred CcEEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHh--HChhHHHHhhccccccCCcEEEEECCEECCC------
Confidence 57899999443 222246788888999999999876 421 1 1234556677777642
Q ss_pred CCccccCCCCCCEEEE
Q 032671 71 RDDVYLQLSNGDSVIA 86 (136)
Q Consensus 71 ~~L~~~~I~dG~tIlv 86 (136)
+.-|++||.|.+
T Consensus 80 ----~~~L~dGDeV~i 91 (98)
T 1vjk_A 80 ----DEELKDGDVVGV 91 (98)
T ss_dssp ----TCBCCTTCEEEE
T ss_pred ----CCCCCCCCEEEE
Confidence 346899999844
No 130
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=92.94 E-value=0.75 Score=32.59 Aligned_cols=79 Identities=14% Similarity=0.277 Sum_probs=50.2
Q ss_pred CceEEEEEeCCC--CCcEEEEecCCCcHHHHHHHHHhccCCCCC------CCceEEEec-Ce----ecCCCCCC------
Q 032671 8 ESVEITVKTIGP--APPSRLSVSSPIKVRDLRKLIATSSANHLP------IENLRLVFR-GK----VLDDTQDD------ 68 (136)
Q Consensus 8 ~~m~I~VKt~~~--~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~------~~~QRLI~~-GK----~L~D~~t~------ 68 (136)
.+++|++-...+ ...+.+.|-.-.||.++|++|-.+.-.+.| ++...|-++ |. .|.|....
T Consensus 12 ~~ltl~v~~~~~~~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~ 91 (117)
T 4e74_A 12 KTLVLSCVSPDNANSPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIEND 91 (117)
T ss_dssp CEEEEEECCC----CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---
T ss_pred EEEEEEEEccCCCCCCceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCc
Confidence 456666654332 222667777778999999999875545654 445777763 43 25443221
Q ss_pred --CCCCccccCCCCCCEE-EE
Q 032671 69 --DDRDDVYLQLSNGDSV-IA 86 (136)
Q Consensus 69 --d~~~L~~~~I~dG~tI-lv 86 (136)
.=-||..|+|.+|.+| ++
T Consensus 92 wkrLNTL~HY~V~dgatl~l~ 112 (117)
T 4e74_A 92 WKRLNTLAHYQVPDGSVVALV 112 (117)
T ss_dssp CCCCCBHHHHTCCTTCEEEEE
T ss_pred ceEeccccccCCCCCCEEEEE
Confidence 0046889999999999 54
No 131
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.95 E-value=0.43 Score=32.38 Aligned_cols=76 Identities=13% Similarity=0.066 Sum_probs=57.7
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032671 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA 86 (136)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv 86 (136)
..++.+.|.-...++ ..+.|+|..++.+|--.|-+ ++.+.|+.--|.-.-+.- +..+=+++|.+|||++ +|+
T Consensus 8 E~TvRLvVNy~~tQK-tVvRVSP~vpL~ellp~IC~--Kcefdp~~~~Ll~d~~~~--e~LdLskSLndlgirE---Lya 79 (91)
T 2daj_A 8 EKTVRVVINFKKTQK-TIVRVSPHASLQELAPIICS--KCEFDPLHTLLLKDYQSQ--EPLDLTKSLNDLGLRE---LYA 79 (91)
T ss_dssp CSCEEEEEEETTTEE-EEEEECSSSCTTTHHHHHHH--HTTCCTTSEEEESCSSCC--CBCCTTSCHHHHTCSE---EEE
T ss_pred ccEEEEEEeecCcce-eEEEeCCCCcHHHHHHHHhh--cccCChhhEEEecCCCCC--cccchhcchhhhhhhh---hhe
Confidence 378999999988876 67899999999999999988 999999998776433221 1122345699999997 766
Q ss_pred EecC
Q 032671 87 AVKP 90 (136)
Q Consensus 87 ~~~p 90 (136)
+-..
T Consensus 80 ~d~~ 83 (91)
T 2daj_A 80 MDVN 83 (91)
T ss_dssp EECC
T ss_pred eccc
Confidence 5543
No 132
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=90.69 E-value=0.16 Score=36.36 Aligned_cols=34 Identities=12% Similarity=0.189 Sum_probs=29.8
Q ss_pred EEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEec
Q 032671 23 SRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFR 58 (136)
Q Consensus 23 ~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~ 58 (136)
..+.|..++|+.+|+..|++ ..|+|+++|||-+-
T Consensus 58 ~~~rv~k~~~~~~~~~~va~--~lg~~~~~~RlW~~ 91 (130)
T 2kvr_A 58 TVFKVLKNSSLAEFVQSLSQ--TMGFPQDQIRLWPM 91 (130)
T ss_dssp EEEECCTTSBHHHHHHHHHH--HHCCCGGGCEEEEC
T ss_pred ceEEEeccCcHHHHHHHHHH--HhCCCcccEEEEEe
Confidence 35678889999999999999 99999999999644
No 133
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=88.95 E-value=2.2 Score=28.28 Aligned_cols=33 Identities=24% Similarity=0.481 Sum_probs=23.4
Q ss_pred eEEEEEeC-------CCCCcEEEEec--CCCcHHHHHHHHHh
Q 032671 10 VEITVKTI-------GPAPPSRLSVS--SPIKVRDLRKLIAT 42 (136)
Q Consensus 10 m~I~VKt~-------~~~~~~~v~v~--~~~TV~eLK~~Ia~ 42 (136)
|+|+|+.. ++.....++++ ...||++|.+.+.+
T Consensus 2 M~i~V~~fa~lre~~~g~~~~~~~l~~~~~~Tv~~L~~~L~~ 43 (99)
T 2qjl_A 2 VNVKVEFLGGLDAIFGKQRVHKIKMDKEDPVTVGDLIDHIVS 43 (99)
T ss_dssp EEEEEEEETTGGGGTTTCCEEEEEECSCSCCBHHHHHHHHHH
T ss_pred cEEEEEEchHHHHHhCCCcEEEEecCCCCCCcHHHHHHHHHH
Confidence 67777732 23443567777 67899999999976
No 134
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=87.43 E-value=1 Score=29.96 Aligned_cols=62 Identities=10% Similarity=0.088 Sum_probs=40.7
Q ss_pred CCceEEEEEeCCCCCcEEEEecCC-CcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-
Q 032671 7 SESVEITVKTIGPAPPSRLSVSSP-IKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV- 84 (136)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~v~v~~~-~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI- 84 (136)
..+|+|+|. +. .++++.. .||.+|.+.+ ++++....+...|..+..+ . ..+.-|++||.|
T Consensus 18 ~~~M~I~vN---Ge---~~el~~~~~Tv~dLL~~L------~~~~~~vaVavNg~iV~~~-~-----~~~~~L~dGD~Ve 79 (87)
T 1tyg_B 18 GGRHMLQLN---GK---DVKWKKDTGTIQDLLASY------QLENKIVIVERNKEIIGKE-R-----YHEVELCDRDVIE 79 (87)
T ss_dssp ----CEEET---TE---EECCSSSCCBHHHHHHHT------TCTTSCCEEEETTEEECGG-G-----TTTSBCCSSSEEE
T ss_pred CcceEEEEC---CE---EEECCCCCCcHHHHHHHh------CCCCCCEEEEECCEECChh-h-----cCCcCCCCCCEEE
Confidence 445666553 32 4667777 8999997654 4667777788999998632 1 345579999999
Q ss_pred EE
Q 032671 85 IA 86 (136)
Q Consensus 85 lv 86 (136)
++
T Consensus 80 i~ 81 (87)
T 1tyg_B 80 IV 81 (87)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 135
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=87.10 E-value=1.2 Score=32.06 Aligned_cols=63 Identities=24% Similarity=0.302 Sum_probs=43.0
Q ss_pred EEEecC----CCcHHHHHHHHHhccCCCCCCCceEEEe--cCeecCCCCCCCC--CCccccCCCCCCEEEEEec
Q 032671 24 RLSVSS----PIKVRDLRKLIATSSANHLPIENLRLVF--RGKVLDDTQDDDD--RDDVYLQLSNGDSVIAAVK 89 (136)
Q Consensus 24 ~v~v~~----~~TV~eLK~~Ia~~~~~gi~~~~QRLI~--~GK~L~D~~t~d~--~~L~~~~I~dG~tIlv~~~ 89 (136)
.+.|+. .+|+.+|-+.+.. +.|+.. ..-++- ..+.|-|..-+|. ++|+++||++|++|.+.-.
T Consensus 9 vl~v~~~dl~~~TL~dLV~~l~~--~~gy~~-eiSV~~~~~~rLLyD~DfDDnl~k~L~dLgv~~gsfLtv~DE 79 (127)
T 3onh_A 9 VIKLSSDCLNKMKLSDFVVLIRE--KYSYPQ-DISLLDASNQRLLFDYDFEDLNDRTLSEINLGNGSIILFSDE 79 (127)
T ss_dssp EEEECHHHHHHCBHHHHHHHHHH--HHTCCS-SEEEEETTTTEEEEETTBCTTTTSBTTTTTCCTTCEEEEEES
T ss_pred EEEeCcccccccCHHHHHHHHHH--hcCCCC-cEEEEecCCCCeEeCCCccccccCcHHHcCcCCCcEEEEEcc
Confidence 367765 3799998888877 677753 444432 3455545444443 8899999999999976543
No 136
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=86.77 E-value=2.8 Score=28.09 Aligned_cols=75 Identities=17% Similarity=0.154 Sum_probs=46.4
Q ss_pred CceEEEEEeCCCCCcEEEEecC-CCcHHHHHHHHHhccCCCCCCCceEE-EecC---eecCCCCCCCCCCccccCCCCCC
Q 032671 8 ESVEITVKTIGPAPPSRLSVSS-PIKVRDLRKLIATSSANHLPIENLRL-VFRG---KVLDDTQDDDDRDDVYLQLSNGD 82 (136)
Q Consensus 8 ~~m~I~VKt~~~~~~~~v~v~~-~~TV~eLK~~Ia~~~~~gi~~~~QRL-I~~G---K~L~D~~t~d~~~L~~~~I~dG~ 82 (136)
.+..|.-|....+....|.++. ..+|.+||.+|.+ +.++-..+.-| ||.. ..-.|+ ..-|.-+.
T Consensus 5 ~mS~V~YKFkS~k~~~~v~fdG~~Isv~dLKr~I~~--~~kl~~~dfDL~i~na~T~eeY~Dd---------~~lIprns 73 (86)
T 2c7h_A 5 SMSCVHYKFSSKLNYDTVTFDGLHISLCDLKKQIMG--REKLKAADCDLQITNAQTKEEYTDD---------NALIPKNS 73 (86)
T ss_dssp TBEEEEEEETTCSSEEEEEESSSEEEHHHHHHHHHH--HHTCCTTTEEEEEEESSSCCEECST---------TCEEETTC
T ss_pred ceeEEEEEEeecCCcceEEEcCCEEEHHHHHHHHHH--HhCCCCCcccEEEeCCCCCCccCCC---------ceEEecCC
Confidence 4567788877777655688886 4899999999998 54444444444 3332 222222 22355567
Q ss_pred EEEEEecCCCC
Q 032671 83 SVIAAVKPKPP 93 (136)
Q Consensus 83 tIlv~~~p~~~ 93 (136)
+|+|...|...
T Consensus 74 sViVrRvP~~~ 84 (86)
T 2c7h_A 74 SVIVRRIPIGG 84 (86)
T ss_dssp CEEEEEEECSS
T ss_pred EEEEEeccCcc
Confidence 77776666543
No 137
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=85.03 E-value=0.55 Score=32.59 Aligned_cols=71 Identities=24% Similarity=0.284 Sum_probs=40.7
Q ss_pred CceEEEEEeCCCCC-----cEEEEecC----CCcHHHHHHHHHhccCCCCCCCceEEEec-C--e------ecCCCCCCC
Q 032671 8 ESVEITVKTIGPAP-----PSRLSVSS----PIKVRDLRKLIATSSANHLPIENLRLVFR-G--K------VLDDTQDDD 69 (136)
Q Consensus 8 ~~m~I~VKt~~~~~-----~~~v~v~~----~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~-G--K------~L~D~~t~d 69 (136)
.+|+|+|+..++-. ...++++. .+||++|=..+.+ . ++..+-+|+.. | . +|-++..
T Consensus 3 ~~m~v~V~f~g~l~~l~g~~~~v~l~~~~g~~~TV~dLl~~L~~--~--~~~~r~~lf~~~g~~~lrpgIlVLVNg~d-- 76 (110)
T 2k9x_A 3 NHNHITVQFAGGCELLFAKQTSLQLDGVVPTGTNLNGLVQLLKT--N--YVKERPDLLVDQTGQTLRPGILVLVNSCD-- 76 (110)
T ss_dssp CSSCCEEEEESSCGGGTTSCSEECCCCSCGGGCCHHHHHHHHTT--T--TCCSCHHHHBCSSSSSBCTTEEEEESSSB--
T ss_pred CccEEEEEEEecHHHHhCCeEEEEeCCcCCCCccHHHHHHHHHH--H--ccccchhhEecCCCcccCCCeEEEECCee--
Confidence 35888888554421 24677773 3699998887755 3 34444444322 3 1 2333322
Q ss_pred CCCc-----cccCCCCCCEEEEE
Q 032671 70 DRDD-----VYLQLSNGDSVIAA 87 (136)
Q Consensus 70 ~~~L-----~~~~I~dG~tIlv~ 87 (136)
+ .+|-|++||.|.++
T Consensus 77 ---~e~l~gldt~L~dgD~V~fi 96 (110)
T 2k9x_A 77 ---AEVVGGMDYVLNDGDTVEFI 96 (110)
T ss_dssp ---HHHHTSSCCCCCSSCEEEEE
T ss_pred ---eeccCCcccCCCCcCEEEEe
Confidence 3 34679999998554
No 138
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=84.88 E-value=3.9 Score=32.53 Aligned_cols=48 Identities=15% Similarity=0.253 Sum_probs=39.2
Q ss_pred EEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCee
Q 032671 12 ITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKV 61 (136)
Q Consensus 12 I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~ 61 (136)
+.+-.......+.+.+.+..|+.+|++.+++ .++++++.|.|+|.+..
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~t~i~~~~q~~l~~~~~ 360 (396)
T 4eut_A 313 IHVFSLQQMTAHKIYIHSYNTATIFHELVYK--QTKIISSNQELIYEGRR 360 (396)
T ss_dssp EEEEETTTTEEEEEEECTTCBHHHHHHHHHH--HHCCCSTTEEEESSSSE
T ss_pred EEEEEeccceEEEEEcCchhHHHHHHHHHHH--hcCCChhhhHHHhcCCC
Confidence 4455555544456788899999999999999 99999999999999843
No 139
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=84.75 E-value=1.7 Score=26.65 Aligned_cols=60 Identities=17% Similarity=0.116 Sum_probs=37.6
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EE
Q 032671 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IA 86 (136)
Q Consensus 10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI-lv 86 (136)
|.|+|...+|. ..+++..+|+.+|-..+.. +++....-....|+... + ++-|++|+.| ++
T Consensus 1 m~i~i~~p~g~---~~~~~~g~T~~dla~~i~~----~l~~~~vaa~vNg~lvd---------l-~~~L~~~~~Veiv 61 (73)
T 2kmm_A 1 MEVMVFTPKGE---IKRLPQGATALDFAYSLHS----DLGDHCIGAKVNHKLVP---------L-SYVLNSGDQVEVL 61 (73)
T ss_dssp CCEEEECTTCC---EEEECTTCBHHHHHHHHCS----HHHHTEEEEEETTEECC---------T-TCBCCSSSBEEEE
T ss_pred CeEEEEcCCCC---EEEcCCCCcHHHHHHHHhh----ccccceEEEEECCEEeC---------C-CcCcCCCCEEEEE
Confidence 56777776664 3678889999999877632 11112222245677664 3 3567889988 44
No 140
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=83.87 E-value=5.7 Score=26.55 Aligned_cols=52 Identities=10% Similarity=0.101 Sum_probs=38.4
Q ss_pred CCCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCc-eEEEecCe
Q 032671 5 EISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIEN-LRLVFRGK 60 (136)
Q Consensus 5 e~~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~-QRLI~~GK 60 (136)
..+..|+|++.-.+ ..+.+.++++.+..+|.+++.+ .++++.++ ..+-|.--
T Consensus 2 ~~~~~vkvK~~~~g--di~~~~v~~~i~~~~L~~kv~~--~~~~~~~~~f~lky~DE 54 (89)
T 1vd2_A 2 PLGSQVRVKAYYRG--DIMITHFEPSISFEGLCNEVRD--MCSFDNEQLFTMKWIDE 54 (89)
T ss_dssp CCSSCEEEEEESSS--CEEEEEECTTCCHHHHHHHHHH--HTTCCSSCCEEEEECCS
T ss_pred CCCCeEEEEEEeCC--eEEEEECCCCCCHHHHHHHHHH--HhCCCCCCeEEEEEECC
Confidence 34456766666543 3367899999999999999999 89887655 67767633
No 141
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=82.75 E-value=4.2 Score=25.42 Aligned_cols=51 Identities=20% Similarity=0.215 Sum_probs=33.4
Q ss_pred EEEEecCCCcHHHHHHHHHhccCCC-----CCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032671 23 SRLSVSSPIKVRDLRKLIATSSANH-----LPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA 86 (136)
Q Consensus 23 ~~v~v~~~~TV~eLK~~Ia~~~~~g-----i~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv 86 (136)
..++ +...||.+|.+.+.. ... ++.....+..+|+.... +.-|++||.|.+
T Consensus 19 ~~~~-~~~~tv~~ll~~L~~--~~p~~~~~l~~~~~~v~vN~~~v~~----------~~~l~~gD~V~i 74 (81)
T 1fm0_D 19 TEVA-ADFPTVEALRQHMAA--QSDRWALALEDGKLLAAVNQTLVSF----------DHPLTDGDEVAF 74 (81)
T ss_dssp EEEC-SCCSBHHHHHHHHHT--TCHHHHHHHCCTTCEEEETTEECCT----------TCBCCTTCEEEE
T ss_pred EEEc-CCCCCHHHHHHHHHH--HChhHHHHhcCCCEEEEECCEECCC----------CCCCCCCCEEEE
Confidence 3344 466899999999875 421 22334567778887642 236899999944
No 142
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=82.24 E-value=6.9 Score=24.98 Aligned_cols=53 Identities=17% Similarity=0.168 Sum_probs=35.7
Q ss_pred EEEEecCCCcHHHHHHHHHhccCCC-C-----CC-----CceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 032671 23 SRLSVSSPIKVRDLRKLIATSSANH-L-----PI-----ENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAA 87 (136)
Q Consensus 23 ~~v~v~~~~TV~eLK~~Ia~~~~~g-i-----~~-----~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~ 87 (136)
..++++...||.+|.+.+.. ... + .. ....+..+|+.... +.-|++||.|.++
T Consensus 20 ~~~~~~~~~Tv~~ll~~L~~--~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~----------~~~l~~gDeV~i~ 83 (89)
T 3po0_A 20 VRVDVDGDATVGDALDALVG--AHPALESRVFGDDGELYDHINVLRNGEAAAL----------GEATAAGDELALF 83 (89)
T ss_dssp EEEECCTTCBHHHHHHHHHH--HCGGGHHHHBCTTSCBCTTSEEEETTEECCT----------TSBCCTTCEEEEE
T ss_pred EEEECCCCCcHHHHHHHHHH--HCcHHHHHHhccCCcccccEEEEECCEECCC----------CcccCCCCEEEEE
Confidence 56788888999999999977 431 1 00 12456677777653 2368999999443
No 143
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=80.98 E-value=6.8 Score=27.04 Aligned_cols=75 Identities=17% Similarity=0.174 Sum_probs=54.1
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEE---ecCee--cCCCCCCCCCCccccCCCCC
Q 032671 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLV---FRGKV--LDDTQDDDDRDDVYLQLSNG 81 (136)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI---~~GK~--L~D~~t~d~~~L~~~~I~dG 81 (136)
+..+-..|-....++ .++.++.+.|+.+++..+++ +.+...+.+.|+ +.|.. |++++. -..-.+.-+
T Consensus 7 sD~i~~~Vy~~Dhsy-~tvr~~v~~sa~eIl~~va~--kl~~~~e~l~Lv~v~ssGEk~~lqp~d~-----si~tsL~~N 78 (104)
T 1wgy_A 7 GEEIFCHVYITEHSY-VSVKAKVSSIAQEILKVVAE--KIQYAEEDLALVAITFSGEKHELQPNDL-----VISKSLEAS 78 (104)
T ss_dssp SSCCCEEEECSSSCE-EEECCCTTCBSHHHHHHHHH--HHTSCGGGEEEEEECSSCCCCBCCTTSB-----SSCCSSCSS
T ss_pred CCceEEEEEeccCce-EEEEEeccchHHHHHHHHHH--HhcCCccceEEEEEccCCcEeecCCcce-----EEEeecccc
Confidence 344556677777766 77889999999999999999 888877788886 56654 455444 444456667
Q ss_pred CEEEEEec
Q 032671 82 DSVIAAVK 89 (136)
Q Consensus 82 ~tIlv~~~ 89 (136)
..|+++.+
T Consensus 79 gRLfvc~k 86 (104)
T 1wgy_A 79 GRIYVYRK 86 (104)
T ss_dssp CEEEEEEC
T ss_pred ceEEEeeh
Confidence 78876654
No 144
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=80.94 E-value=7.2 Score=34.77 Aligned_cols=80 Identities=13% Similarity=0.196 Sum_probs=51.1
Q ss_pred CceEEEEEeCCC-----CCcEEEEecCCCcHHHHHHHHHhccCCCCC------CCceEEEec----Ce-ecCCCCCCCC-
Q 032671 8 ESVEITVKTIGP-----APPSRLSVSSPIKVRDLRKLIATSSANHLP------IENLRLVFR----GK-VLDDTQDDDD- 70 (136)
Q Consensus 8 ~~m~I~VKt~~~-----~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~------~~~QRLI~~----GK-~L~D~~t~d~- 70 (136)
.++++.|-...+ ...+.+.|-.-.||.++|++|-.+.-.|.| ++...|-++ |+ .|.|....-.
T Consensus 256 ~~ltL~v~~~~~~~~~~~~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~ 335 (644)
T 3hm6_X 256 RPLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEV 335 (644)
T ss_dssp CEEEEEEECC-------CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCCE
T ss_pred eeEEEEEeecCccccCCCCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCcccee
Confidence 457777765322 233667888888999999999864444544 455677663 33 3555331100
Q ss_pred -------CCccccCCCCCCEE-EEE
Q 032671 71 -------RDDVYLQLSNGDSV-IAA 87 (136)
Q Consensus 71 -------~~L~~~~I~dG~tI-lv~ 87 (136)
-||..|+|.||.+| ++.
T Consensus 336 ~~~wkrLNTL~HY~V~dga~v~L~p 360 (644)
T 3hm6_X 336 QGLWRRLNTLQHYKVPDGATVALVP 360 (644)
T ss_dssp ETTEEECCBTTTTTCCTTCEEEEEE
T ss_pred cCcceeecchhhcCCCCCcEEEEEe
Confidence 46999999999999 543
No 145
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=80.77 E-value=1 Score=38.78 Aligned_cols=32 Identities=13% Similarity=0.258 Sum_probs=29.3
Q ss_pred EEEEecCCCcHHHHHHHHHhccCCCCCCCceEEE
Q 032671 23 SRLSVSSPIKVRDLRKLIATSSANHLPIENLRLV 56 (136)
Q Consensus 23 ~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI 56 (136)
..+.|..++|+.+||+.|++ ..|+++++|||-
T Consensus 38 ~~~rv~k~~~~~~l~~~va~--~lg~~~~~~RlW 69 (530)
T 2ylm_A 38 TVFKVLKNSSLAEFVQSLSQ--TMGFPQDQIRLW 69 (530)
T ss_dssp EEEEEETTSBHHHHHHHHHH--HHTSCGGGEEEE
T ss_pred ceEEEcCcCCHHHHHHHHHH--HhCcCcccEEEE
Confidence 35788999999999999999 999999999994
No 146
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=78.24 E-value=11 Score=33.49 Aligned_cols=80 Identities=13% Similarity=0.241 Sum_probs=51.5
Q ss_pred CceEEEEEeCCC--CCcEEEEecCCCcHHHHHHHHHhccCCCCC------CCceEEEec----Ce-ecCCCCCCCC----
Q 032671 8 ESVEITVKTIGP--APPSRLSVSSPIKVRDLRKLIATSSANHLP------IENLRLVFR----GK-VLDDTQDDDD---- 70 (136)
Q Consensus 8 ~~m~I~VKt~~~--~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~------~~~QRLI~~----GK-~L~D~~t~d~---- 70 (136)
.++++.+-...+ ...+.+.|-.-.||.++|++|-.+.-.|.| ++...|-++ |+ .|.|....-.
T Consensus 232 ~~ltL~v~~~~~~~~~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~ 311 (627)
T 3ig3_A 232 KTLTLHCVCPESEGSAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECD 311 (627)
T ss_dssp CEEEEEEECTTTC--CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETT
T ss_pred eeEEEEEeccCCCCCCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccCc
Confidence 457777765432 233567777778999999999874444543 556777663 33 3444322111
Q ss_pred ----CCccccCCCCCCEE-EEE
Q 032671 71 ----RDDVYLQLSNGDSV-IAA 87 (136)
Q Consensus 71 ----~~L~~~~I~dG~tI-lv~ 87 (136)
-||..|+|.||.+| ++.
T Consensus 312 wkrLNTL~HY~V~Dga~v~L~p 333 (627)
T 3ig3_A 312 WKRVNSLAHYQVTDGSLVALVP 333 (627)
T ss_dssp EEECCBTTTTTCCTTCEEEEEE
T ss_pred eeEecchhhcCCCCCceEEEEe
Confidence 36899999999999 553
No 147
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=77.43 E-value=2.9 Score=26.02 Aligned_cols=51 Identities=12% Similarity=0.237 Sum_probs=35.0
Q ss_pred EEEEecCCCcHHHHHHHHHhccCCCCCCCce--EEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032671 23 SRLSVSSPIKVRDLRKLIATSSANHLPIENL--RLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA 86 (136)
Q Consensus 23 ~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~Q--RLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv 86 (136)
..++++...||.+|.+.+.. ... ...+. .+..+|+....+ .-+++||.|-+
T Consensus 18 ~~~~~~~~~tv~~ll~~l~~--~~p-~~~~v~~~v~vNg~~v~~~----------~~L~~gD~V~i 70 (77)
T 2q5w_D 18 EDIVLEQALTVQQFEDLLFE--RYP-QINNKKFQVAVNEEFVQKS----------DFIQPNDTVAL 70 (77)
T ss_dssp EECCCSSCEEHHHHHHHHHH--HCG-GGTTCCCEEEETTEEECTT----------SEECTTCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHH--HCc-chhcceEEEEECCEECCCC----------CCcCCCCEEEE
Confidence 44666777899999999876 421 11334 677888887532 36899999943
No 148
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=74.75 E-value=9.3 Score=33.88 Aligned_cols=41 Identities=12% Similarity=0.234 Sum_probs=35.6
Q ss_pred EEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCC
Q 032671 23 SRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDT 65 (136)
Q Consensus 23 ~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~ 65 (136)
+.+.+.++.|+.+|+..|.. .++++++.|-+++.+....+.
T Consensus 324 ~~~~i~~~~tl~~l~~~i~~--~T~i~~~~q~~~~~~~~~~~p 364 (676)
T 3qa8_A 324 HTYPVTENENLQNLKSWLQQ--DTGIPEEEQELLQASGLALNS 364 (676)
T ss_dssp CEEECCTTCCHHHHHHHHHT--TSCCCSTTCEEESSSSCCCCT
T ss_pred ceeecCCCccHHHHHHHHHH--HhCCCHHHHHHHhccCCCCCC
Confidence 56889999999999999999 999999999999987654443
No 149
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=74.21 E-value=13 Score=25.02 Aligned_cols=69 Identities=14% Similarity=0.153 Sum_probs=46.0
Q ss_pred CceEEEEEeCCCCC--cEEEEecCCCcHHHHHHHHHhc-cCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE
Q 032671 8 ESVEITVKTIGPAP--PSRLSVSSPIKVRDLRKLIATS-SANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV 84 (136)
Q Consensus 8 ~~m~I~VKt~~~~~--~~~v~v~~~~TV~eLK~~Ia~~-~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI 84 (136)
+.|+|.|-...... .+.++++..+||.++=++..-. ....+..+...+-..|+..+.+ .-+++||.|
T Consensus 11 ~~~~v~v~ya~p~rq~~~~~~v~~g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~~v~~d----------~~L~dGDRV 80 (97)
T 2hj1_A 11 NQINIEIAYAFPERYYLKSFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIKLT----------DVLKEGDRI 80 (97)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEETTCBHHHHHHHHTHHHHCTTCCTTTSEEEEEECSCCTT----------CBCCTTCEE
T ss_pred ceEEEEEEEeCCCCCEEEEEEcCCCCcHHHHHHHcCCCccCCcccccccEEEEcCEECCCC----------ccCCCCCEE
Confidence 56777777554443 2447888999999987665310 0224555567888889888632 258999999
Q ss_pred -EE
Q 032671 85 -IA 86 (136)
Q Consensus 85 -lv 86 (136)
++
T Consensus 81 EIy 83 (97)
T 2hj1_A 81 EIY 83 (97)
T ss_dssp EEC
T ss_pred EEE
Confidence 54
No 150
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=73.95 E-value=15 Score=23.59 Aligned_cols=55 Identities=11% Similarity=0.088 Sum_probs=34.2
Q ss_pred EEEecCCCcHHHHHHHHHhccCCC-C-----C-------CCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 032671 24 RLSVSSPIKVRDLRKLIATSSANH-L-----P-------IENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAA 87 (136)
Q Consensus 24 ~v~v~~~~TV~eLK~~Ia~~~~~g-i-----~-------~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~ 87 (136)
.+++ ...||.+|.+.+.. ... + . .....+..+|+...+.. -.+.-|++||.|.++
T Consensus 20 ~~~~-~~~Tv~~ll~~L~~--~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~------~~~~~L~~gDeV~i~ 87 (93)
T 3dwg_C 20 SVSA-SGDTLGAVISDLEA--NYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSG------GLATAIADGDSVTIL 87 (93)
T ss_dssp EEEE-CCSBHHHHHHHHHH--HSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTT------GGGCBCCTTCEEEEE
T ss_pred EEec-CCCCHHHHHHHHHH--HChhHHHHHhccccCCcccCCEEEEECCEEccCcC------CCCcCCCCCCEEEEE
Confidence 4664 45799999999986 431 0 1 11356667777765311 124579999999443
No 151
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=72.07 E-value=15 Score=25.00 Aligned_cols=59 Identities=12% Similarity=0.120 Sum_probs=43.0
Q ss_pred CCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEe-------cCeecCCCCC
Q 032671 6 ISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVF-------RGKVLDDTQD 67 (136)
Q Consensus 6 ~~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~-------~GK~L~D~~t 67 (136)
..+.+-|+|-..+++. ..|.|++.+|++++=+.+++ +.++..+.-.-+| --+.++|...
T Consensus 6 ~~~k~vvkvf~~Dgss-ksi~V~~~~Ta~dv~~~L~~--K~~~~~~~~WaLvE~~P~L~~ER~~EDHE~ 71 (100)
T 1wgr_A 6 SGRPHVVKVYSEDGAC-RSVEVAAGATARHVCEMLVQ--RAHALSDETWGLVECHPHLALERGLEDHES 71 (100)
T ss_dssp CCSCEEEEEEETTSCE-EEEEECTTCCHHHHHHHHHC--SSSCCCCCCCCEEEEETTTTEEEEECSSSC
T ss_pred cCCCEEEEEEecCCCE-EEEEECCCCcHHHHHHHHHH--HcCCCCCCCeEEEEecCCCCcEEeccCchh
Confidence 3456778888888876 78999999999999999998 8887655422222 3355666655
No 152
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=71.53 E-value=2.2 Score=27.52 Aligned_cols=51 Identities=20% Similarity=0.290 Sum_probs=37.6
Q ss_pred EEEec--CCCcHHHHHHHHHhccCCCCC-CCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EE
Q 032671 24 RLSVS--SPIKVRDLRKLIATSSANHLP-IENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IA 86 (136)
Q Consensus 24 ~v~v~--~~~TV~eLK~~Ia~~~~~gi~-~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI-lv 86 (136)
..+++ ...||.+|-+. .+++ +...-+.+.|..+..+ . ..+.-|++||.| ++
T Consensus 9 ~~e~~~~~~~Tl~~LL~~------l~~~~~~~vAVavNg~iVpr~-~-----~~~~~L~dGD~IEIv 63 (78)
T 2k5p_A 9 PSTVDGAESLNVTELLSA------LKVAQAEYVTVELNGEVLERE-A-----FDATTVKDGDAVEFL 63 (78)
T ss_dssp EEECSSCSCEEHHHHHHH------HTCSCTTTCCEEETTEECCTT-H-----HHHCEECSSBCEEEC
T ss_pred EEEcCCCCCCcHHHHHHH------cCCCCCCcEEEEECCEECChH-H-----cCcccCCCCCEEEEE
Confidence 45666 67899999654 3566 7777788999998643 2 456689999999 54
No 153
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=69.29 E-value=8.4 Score=24.84 Aligned_cols=60 Identities=17% Similarity=0.151 Sum_probs=39.1
Q ss_pred EEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EEE
Q 032671 11 EITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IAA 87 (136)
Q Consensus 11 ~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI-lv~ 87 (136)
+|+|.+++|. .++++..+|+.++=..|.. ..+ -.-.--...|+... | ++-|++|+.| ++-
T Consensus 7 ~i~v~tP~G~---~~~lp~GaT~~D~A~~Ih~--~lg--~~~v~AkVNG~~v~---------L-~~~L~~gd~VeIit 67 (78)
T 3hvz_A 7 EVFVFTPKGD---VISLPIGSTVIDFAYAIHS--AVG--NRMIGAKVDGRIVP---------I-DYKVKTGEIIDVLT 67 (78)
T ss_dssp EEEEECTTSC---EEEEETTCBHHHHHHHHCH--HHH--HTEEEEEETTEEEC---------T-TCBCCTTCBEEEEE
T ss_pred eEEEECCCCC---EEEecCCCCHHHHHHHhhh--hhh--cceEEEEECCEEcC---------C-CcccCCCCEEEEEc
Confidence 5888888884 4789999999998766643 111 11112234676664 3 3578999999 543
No 154
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=68.93 E-value=2.1 Score=29.18 Aligned_cols=63 Identities=13% Similarity=0.259 Sum_probs=38.7
Q ss_pred EEEEecCCCcHHHHHHHHHhccCCCCC-CC--------ceEEEecC-eecCCCCCCC--CCCccccCCCCCCEEEE
Q 032671 23 SRLSVSSPIKVRDLRKLIATSSANHLP-IE--------NLRLVFRG-KVLDDTQDDD--DRDDVYLQLSNGDSVIA 86 (136)
Q Consensus 23 ~~v~v~~~~TV~eLK~~Ia~~~~~gi~-~~--------~QRLI~~G-K~L~D~~t~d--~~~L~~~~I~dG~tIlv 86 (136)
..+++++++|+.+|-+.+.+...+.+- |+ ...|...+ ..|+. .|.. +++|.++|+.+|+.|.|
T Consensus 7 ~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee-~Tr~NL~k~l~eLgl~~g~ei~V 81 (98)
T 1y8x_B 7 QNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEE-RTRPNLSKTLKELGLVDGQELAV 81 (98)
T ss_dssp CCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCHHHHH-HHHHHHHSBSGGGTCCTTCEEEE
T ss_pred EEEEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEEEeCcHHHHH-HhHhhhhCCHHHhCCCCCCEEEE
Confidence 568999999999999999872122221 11 33444444 12221 0100 14599999999999876
No 155
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=68.58 E-value=8.2 Score=25.51 Aligned_cols=69 Identities=17% Similarity=0.222 Sum_probs=40.2
Q ss_pred ceEEEEEeCCCCCc----EEEEecCCCcHHHHHHHHHhccCCC-CCC---------Cce-------EEEecCeecCCCCC
Q 032671 9 SVEITVKTIGPAPP----SRLSVSSPIKVRDLRKLIATSSANH-LPI---------ENL-------RLVFRGKVLDDTQD 67 (136)
Q Consensus 9 ~m~I~VKt~~~~~~----~~v~v~~~~TV~eLK~~Ia~~~~~g-i~~---------~~Q-------RLI~~GK~L~D~~t 67 (136)
+|+|+|+....-.. -.++++ ..||.+|.+.+.. ... +.. ... .+..+|+......
T Consensus 3 mm~v~V~~fa~lr~~~g~~~~~l~-~~tv~~ll~~L~~--~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~~- 78 (99)
T 2l52_A 3 MAEVKVKLFANLREAAGTPELPLS-GEKVIDVLLSLTD--KYPALKYVIFEKGDEKSEILILCGSINILINGNNIRHLE- 78 (99)
T ss_dssp CCEEEEEECTHHHHHHSSSEEEEE-CSSHHHHHHHHHH--HCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGTT-
T ss_pred ceEEEEEEeHHHHHHhCCCeEEEe-CCcHHHHHHHHHH--HChhHHHHHhcccccccceeccccccEEEECCEEccccC-
Confidence 57888885433211 134555 6899999999876 421 111 123 5677777663211
Q ss_pred CCCCCccccCCCCCCEEEE
Q 032671 68 DDDRDDVYLQLSNGDSVIA 86 (136)
Q Consensus 68 ~d~~~L~~~~I~dG~tIlv 86 (136)
-.+.-|++||.|.+
T Consensus 79 -----~~~~~L~~gD~V~i 92 (99)
T 2l52_A 79 -----GLETLLKDSDEIGI 92 (99)
T ss_dssp -----STTSCCCTTEEEEE
T ss_pred -----CCCCCCCCCCEEEE
Confidence 22346899999843
No 156
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=68.58 E-value=17 Score=24.38 Aligned_cols=67 Identities=12% Similarity=0.168 Sum_probs=52.2
Q ss_pred EEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-E-EEecCCCC-Ccccc
Q 032671 25 LSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-I-AAVKPKPP-PRHLR 98 (136)
Q Consensus 25 v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI-l-v~~~p~~~-~~~~~ 98 (136)
-+++-..++..||..+.. +.+++-+.-.+.+.+..|..+++ |.+-+++-...| + |-.++.++ .+.+.
T Consensus 7 qhmDI~epL~~Lk~LLe~--Rl~i~L~~y~f~LQd~~L~~~k~-----LvdQcVqgeGlVQinvqik~~~~~~~RiN 76 (89)
T 2juo_A 7 QAIDINEPIGNLKKLLEP--RLQCSLDAHEICLQDIQLDPDRS-----LFDQGVKTDGTVQLSVQVISYQGMEPKLN 76 (89)
T ss_dssp EEEESSSBGGGHHHHSHH--HHCSCCSSCEEEETTEECCTTSB-----TTTSSCCCCSEEEEEEEEECCTTCCCEEE
T ss_pred hhccccCcHHHHHHHHHH--HhcCCcccCeEEeeccccCCCcc-----HHHhhcccccEEEEEEEEEecCCCCcceE
Confidence 456677889999999998 99999999999999999988888 999999977777 3 33344433 44443
No 157
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=67.83 E-value=2.9 Score=26.54 Aligned_cols=45 Identities=24% Similarity=0.355 Sum_probs=33.1
Q ss_pred EEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE
Q 032671 24 RLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV 84 (136)
Q Consensus 24 ~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI 84 (136)
.++++...||.+|.+.+ ++++....+...|+....+ .-|++||.|
T Consensus 24 ~~~~~~~~Tv~dLl~~L------~~~~~~v~VavNg~~v~~~----------~~L~dGD~V 68 (77)
T 1rws_A 24 EIEWREGMKVRDILRAV------GFNTESAIAKVNGKVVLED----------DEVKDGDFV 68 (77)
T ss_dssp CCCCCSSCCHHHHHHTT------TCSSCSSCEEETTEEECSS----------SCCCSSCCC
T ss_pred EEECCCCCcHHHHHHHh------CCCCcCEEEEECCEECCCC----------CCcCCCCEE
Confidence 35667778999997643 4566677788889888643 368999988
No 158
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=67.50 E-value=10 Score=22.98 Aligned_cols=51 Identities=10% Similarity=0.172 Sum_probs=36.1
Q ss_pred EEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EE
Q 032671 24 RLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IA 86 (136)
Q Consensus 24 ~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI-lv 86 (136)
.++++...||.+|.+.+ ++++....+...|.....+ . ..+.-+++||.| ++
T Consensus 9 ~~~~~~~~tv~~ll~~l------~~~~~~v~vavN~~~v~~~-~-----~~~~~L~~gD~v~i~ 60 (66)
T 1f0z_A 9 AMQCAAGQTVHELLEQL------DQRQAGAALAINQQIVPRE-Q-----WAQHIVQDGDQILLF 60 (66)
T ss_dssp EECCCTTCCHHHHHHHH------TCCCSSEEEEETTEEECHH-H-----HTTCCCCTTEEECEE
T ss_pred EEEcCCCCcHHHHHHHc------CCCCCCEEEEECCEECCch-h-----cCCcCCCCCCEEEEE
Confidence 35677789999998776 3456677788889887531 1 224478999999 54
No 159
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=65.59 E-value=10 Score=23.89 Aligned_cols=50 Identities=14% Similarity=0.073 Sum_probs=36.9
Q ss_pred EEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EE
Q 032671 24 RLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IA 86 (136)
Q Consensus 24 ~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI-lv 86 (136)
..++ ...||.+|-+. .++++...-+.+.|..+..+ . ..+.-|++||.| ++
T Consensus 9 ~~e~-~~~Tl~~LL~~------l~~~~~~vAV~vNg~iVpr~-~-----~~~~~L~dGD~veIv 59 (73)
T 2kl0_A 9 QREV-QSASVAALMTE------LDCTGGHFAVALNYDVVPRG-K-----WDETPVTAGDEIEIL 59 (73)
T ss_dssp EECC-CCSBHHHHHHH------TTCCSSSCEEEESSSEECHH-H-----HTTCBCCTTCEEEEE
T ss_pred EEEc-CCCcHHHHHHH------cCCCCCcEEEEECCEECChH-H-----cCcccCCCCCEEEEE
Confidence 3456 66899998543 56788888889999998632 1 445689999999 55
No 160
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=64.39 E-value=25 Score=23.42 Aligned_cols=47 Identities=17% Similarity=0.114 Sum_probs=33.0
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEE-ecCe
Q 032671 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLV-FRGK 60 (136)
Q Consensus 8 ~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI-~~GK 60 (136)
+.|+|+|-.-+ .-+.+.|+++.+..+|+.+|.. +..+ +.+.++ |++.
T Consensus 11 ~~~KVK~yy~D--DIiAIrvP~di~~~~L~dKi~~--RLk~--~~~~l~~ykde 58 (85)
T 1ip9_A 11 KTTKIKFYYKD--DIFALMLKGDTTYKELRSKIAP--RIDT--DNFKLQTKLFD 58 (85)
T ss_dssp CCEEEEECBTT--CCEEEEECSCCCHHHHHHHHHH--HHTS--SCEEEEECCSS
T ss_pred CceEEEEEecC--cEEEEECCCCCCHHHHHHHHHH--Hhcc--cceEEEEecCC
Confidence 44666665543 3378999999999999999998 7666 454444 4433
No 161
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=64.23 E-value=9.7 Score=26.36 Aligned_cols=35 Identities=3% Similarity=-0.042 Sum_probs=29.4
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHh
Q 032671 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIAT 42 (136)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~ 42 (136)
+..+.|.+-.++|-. +.++++.++|+.++|+.+.+
T Consensus 17 ~~~v~v~~LlPnGi~-i~l~~~~~~tl~eiK~~lw~ 51 (108)
T 2v1y_A 17 PPRILVECLLPNGMI-VTLECLREATLITIKHELFK 51 (108)
T ss_dssp CSEEEEEEECTTSCE-EEEEEETTCBHHHHHHHHHH
T ss_pred CCcEEEEEEcCcEEE-EEEEeeccccHHHHHHHHHH
Confidence 466788888888855 77899999999999998887
No 162
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=60.57 E-value=17 Score=21.83 Aligned_cols=50 Identities=8% Similarity=0.200 Sum_probs=35.4
Q ss_pred EEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EE
Q 032671 24 RLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IA 86 (136)
Q Consensus 24 ~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI-lv 86 (136)
.+++ ...||.+|.+.+. +++....+...|.....+ . ..+.-|++||.| ++
T Consensus 8 ~~~~-~~~tv~~ll~~l~------~~~~~v~vavN~~~v~~~-~-----~~~~~L~dgD~v~i~ 58 (64)
T 2cu3_A 8 PRPL-EGKTLKEVLEEMG------VELKGVAVLLNEEAFLGL-E-----VPDRPLRDGDVVEVV 58 (64)
T ss_dssp EECC-TTCCHHHHHHHHT------BCGGGEEEEETTEEEEGG-G-----CCCCCCCTTCEEEEE
T ss_pred EEEc-CCCcHHHHHHHcC------CCCCcEEEEECCEECCcc-c-----cCCcCCCCCCEEEEE
Confidence 3566 6789999987763 456677788889887532 1 344579999999 44
No 163
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=60.18 E-value=29 Score=21.74 Aligned_cols=55 Identities=9% Similarity=0.197 Sum_probs=35.8
Q ss_pred EEEecCCCcHHHHHHHHHhccCCC------C-----CCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032671 24 RLSVSSPIKVRDLRKLIATSSANH------L-----PIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA 86 (136)
Q Consensus 24 ~v~v~~~~TV~eLK~~Ia~~~~~g------i-----~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv 86 (136)
.++++...||.+|.+.+.. ... + ......+..+|+..... . -.+.-+++||.|.+
T Consensus 18 ~~~~~~~~tv~~ll~~l~~--~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~-~-----~~~~~l~~gD~V~i 83 (90)
T 2g1e_A 18 EETFNGISKISELLERLKV--EYGSEFTKQMYDGNNLFKNVIILVNGNNITSM-K-----GLDTEIKDDDKIDL 83 (90)
T ss_dssp EEEESSCCBHHHHHHHHHH--HSCHHHHHHHCCSSCSTTTCEEEESSSBGGGT-C-----SSSCBCCTTCEEEE
T ss_pred EEEcCCCCcHHHHHHHHHH--HCcchhhhccccccCcCcceEEEECCEEcccc-C-----CCCcCCCCCCEEEE
Confidence 4567767899999999876 431 0 11345677888877521 1 23447999999944
No 164
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=55.82 E-value=28 Score=24.53 Aligned_cols=76 Identities=18% Similarity=0.189 Sum_probs=53.7
Q ss_pred CCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCC------ceEEE---ecCee--cCCCCCCCCCCcc
Q 032671 6 ISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIE------NLRLV---FRGKV--LDDTQDDDDRDDV 74 (136)
Q Consensus 6 ~~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~------~QRLI---~~GK~--L~D~~t~d~~~L~ 74 (136)
....+-..|-....++ .++.++.+.|+.+++..+++ +.++.-+ .+.|+ +.|.. |++++. -.
T Consensus 6 ~~Dei~~~VY~~Dhsy-~tvr~~v~~sa~eIl~~va~--kl~~~e~~~~~~~~l~Lv~V~ssGEk~vlqp~d~-----sv 77 (120)
T 2dhz_A 6 SGDEIFCRVYMPDHSY-VTIRSRLSASVQDILGSVTE--KLQYSEEPAGREDSLILVAVSSSGEKVLLQPTED-----CV 77 (120)
T ss_dssp SCCCEEECEECTTSCC-CCEEECTTCCHHHHHHHHHH--HSTTCSSTTSCCSCCEEEEEETTCCCEECCTTCS-----CH
T ss_pred CCCcEEEEEEeccCce-EEEEEeccccHHHHHHHHHH--HhccccccccccCceEEEEEccCCcEeecCCcce-----EE
Confidence 3455667777777777 78999999999999999998 8877554 67664 56664 455444 34
Q ss_pred ccCCCCCCEEEEEec
Q 032671 75 YLQLSNGDSVIAAVK 89 (136)
Q Consensus 75 ~~~I~dG~tIlv~~~ 89 (136)
.-.|.-+..|+++.+
T Consensus 78 ~tsL~~NgRLfvc~k 92 (120)
T 2dhz_A 78 FTALGINSHLFACTR 92 (120)
T ss_dssp HHHSCSSEEEEEECT
T ss_pred EeeccccceEEEeeh
Confidence 445566777876654
No 165
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=46.36 E-value=1.1e+02 Score=24.26 Aligned_cols=73 Identities=12% Similarity=0.119 Sum_probs=50.8
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCC-CCceEEEecCe---------ecCCCCCCCCCCccccC
Q 032671 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLP-IENLRLVFRGK---------VLDDTQDDDDRDDVYLQ 77 (136)
Q Consensus 8 ~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~-~~~QRLI~~GK---------~L~D~~t~d~~~L~~~~ 77 (136)
..+.+.|..+++.. ..+.+++.+|+.+|=..|+. ..|+. .+-.-|.+... -|.-+ +.+...+
T Consensus 84 ~~~~~~V~l~dg~~-~~~~vd~~tt~~el~~~v~~--~l~L~e~~~FgL~~~~~~~~~~~~~~wL~~~-----k~l~~q~ 155 (371)
T 3ivf_A 84 KQRPLKIRMLDGTV-KTIMVDDSKTVTDMLMTICA--RIGITNHDEYSLVRELMEEKKDDELNWLDHG-----RTLREQG 155 (371)
T ss_dssp CEEEEEEECTTSCE-EEEEEETTSBHHHHHHHHHH--HTTCSCGGGEEEECCC----------CCCTT-----SBTGGGT
T ss_pred ceeEEEEECcCCCE-EEEEECCCCCHHHHHHHHHH--HcCCCCccccEEEEEecccccchHHHHHhcC-----chhHhhC
Confidence 45788899999976 78999999999999999988 78765 44466665421 12222 2366666
Q ss_pred CCCCCEEEEEe
Q 032671 78 LSNGDSVIAAV 88 (136)
Q Consensus 78 I~dG~tIlv~~ 88 (136)
.....++++.+
T Consensus 156 ~~~~~~l~frv 166 (371)
T 3ivf_A 156 VEEHETLLLRR 166 (371)
T ss_dssp CCTTCEEEEEE
T ss_pred CCCCceEEEEE
Confidence 66666775544
No 166
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=44.11 E-value=17 Score=24.73 Aligned_cols=40 Identities=15% Similarity=0.008 Sum_probs=28.8
Q ss_pred CceEEEEEeCCC------CCcEEEEecCCCcHHHHHHHHHhccCCCCC
Q 032671 8 ESVEITVKTIGP------APPSRLSVSSPIKVRDLRKLIATSSANHLP 49 (136)
Q Consensus 8 ~~m~I~VKt~~~------~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~ 49 (136)
++|+|+|...+. ...+.+-|+++.+..+|..+|.. +.++.
T Consensus 4 ~sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~--Kl~~~ 49 (98)
T 1q1o_A 4 GSILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINS--KISNT 49 (98)
T ss_dssp SCEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHH--HHHHH
T ss_pred ccEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHH--HHcCC
Confidence 447777775432 22267899999999999999988 76543
No 167
>2c5l_C Phosphoinositide-specific phospholipase C PLC-epsilon; signaling protein/complex, RAS, ubiquitin superfold, oncogene, GTP-binding; HET: GTP; 1.9A {Homo sapiens} SCOP: d.15.1.5 PDB: 2byf_A
Probab=43.81 E-value=79 Score=22.00 Aligned_cols=50 Identities=14% Similarity=0.214 Sum_probs=35.8
Q ss_pred CCCCceEEEEEeCCCCCcEE-EEecCCCcHHHHHHHHHhccCCCCC--------CCceEEE
Q 032671 5 EISESVEITVKTIGPAPPSR-LSVSSPIKVRDLRKLIATSSANHLP--------IENLRLV 56 (136)
Q Consensus 5 e~~~~m~I~VKt~~~~~~~~-v~v~~~~TV~eLK~~Ia~~~~~gi~--------~~~QRLI 56 (136)
+.+++..+.|-...+..++. |.++..+|+.+|=.++-. +.|.+ +++..|+
T Consensus 3 ~~~~tf~v~V~~v~p~~py~iv~vt~~STAqdvI~eaL~--kag~~~~~~~~~~~~dYvLv 61 (117)
T 2c5l_C 3 SEEESFFVQVHDVSPEQPRTVIKAPRVSTAQDVIQQTLC--KAKYSLSILSNPNPSDYVLL 61 (117)
T ss_dssp --CCEEEEEEESCCSSCCEEEEEEETTCBHHHHHHHHHH--HTTTSHHHHHSCCGGGEEEE
T ss_pred ccCceEEEEEecCCCCCCeEEEEeCCCCcHHHHHHHHHH--HcCCccccccCCCchHeEEE
Confidence 34578888888877777765 799999999998766655 56654 5566663
No 168
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=42.00 E-value=58 Score=21.44 Aligned_cols=52 Identities=15% Similarity=0.319 Sum_probs=37.8
Q ss_pred CCceEEEEEeCCCCCcE---EEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCe
Q 032671 7 SESVEITVKTIGPAPPS---RLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGK 60 (136)
Q Consensus 7 ~~~m~I~VKt~~~~~~~---~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK 60 (136)
...|.|.+|..+.-..+ .+-|+.+.|+++|...|.. +.++.+++-=.+|=+.
T Consensus 3 ~~Kv~v~fk~~g~~P~l~k~KflVp~~~tv~~~~~~lRk--rL~l~~~~alFlyVnn 57 (91)
T 4gdk_A 3 KKKIDILLKAVGDTPIMKTKKWAVERTRTIQGLIDFIKK--FLKLVASEQLFIYVNQ 57 (91)
T ss_dssp -CEEEEEEEECSSSCCCSCCEEEEETTCBHHHHHHHHHH--HTTCCSSSCCEEEETT
T ss_pred CceEEEEEEecCCCCcccccEEEcCCCCCHHHHHHHHHH--HhCCCCCCeEEEEECC
Confidence 35677888876554322 3789999999999999988 8888887755555444
No 169
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=41.08 E-value=76 Score=20.98 Aligned_cols=71 Identities=6% Similarity=-0.055 Sum_probs=52.7
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCC-C--C--CCCceEEEecCee--cCCCCCCCCCCccccCCCCCC
Q 032671 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSAN-H--L--PIENLRLVFRGKV--LDDTQDDDDRDDVYLQLSNGD 82 (136)
Q Consensus 10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~-g--i--~~~~QRLI~~GK~--L~D~~t~d~~~L~~~~I~dG~ 82 (136)
+-|..+.-+.--.+-+.|+.+.|+.++-++++. .. | + -|.-.|..+.|.. +..+.+ +.+.||+.-+
T Consensus 4 ~Pl~~~F~gDFv~~Lv~VDt~dtmdqVA~k~A~--h~VGrrv~p~pg~lrVr~~G~~~~~Pr~mt-----VaeaGl~Pme 76 (84)
T 3ge3_C 4 FPVHAAFEKDFLVQLVVVDLNDSMDQVAEKVAY--HCVNRRVAPREGVMRVRKHRSTELFPRDMT-----IAESGLNPTE 76 (84)
T ss_dssp EEEEEEETTCSBEEEEEEETTCBHHHHHHHHHH--TTBTTTBCCCSSCEEEEETTCSCBCCTTCB-----HHHHCCCTTC
T ss_pred cceEEEeccccEEEEEEecCCCcHHHHHHHHhh--hhcceeeCCCCCcEEEEECCCcccCCCCCE-----eeccCCCcce
Confidence 345555555544345799999999999999986 32 3 2 2345888899988 887777 9999999999
Q ss_pred EE-EEE
Q 032671 83 SV-IAA 87 (136)
Q Consensus 83 tI-lv~ 87 (136)
.| ++.
T Consensus 77 ~vev~~ 82 (84)
T 3ge3_C 77 VIDVVF 82 (84)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 99 554
No 170
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=40.76 E-value=1.7e+02 Score=24.89 Aligned_cols=58 Identities=21% Similarity=0.063 Sum_probs=38.5
Q ss_pred CceEEEEEeCCCCC-cEEEEecCCCcHHHHHHHHHhccCCCCC---CCceEE--EecCee---cCCCCC
Q 032671 8 ESVEITVKTIGPAP-PSRLSVSSPIKVRDLRKLIATSSANHLP---IENLRL--VFRGKV---LDDTQD 67 (136)
Q Consensus 8 ~~m~I~VKt~~~~~-~~~v~v~~~~TV~eLK~~Ia~~~~~gi~---~~~QRL--I~~GK~---L~D~~t 67 (136)
.+|+|+.-..+.+. .+.+-++.+.||.+|-+.+.. +.+++ ....|| ++.||. +.++..
T Consensus 338 r~~kv~w~~~~~~~~~~~l~vpK~gtV~Dll~~l~k--~~~~~~~~~~~lRl~ev~~~ki~ki~~~~~~ 404 (530)
T 2ylm_A 338 RSFKCIWLNSQFREEEITLYPDKHGCVRDLLEECKK--AVELGEKASGKLRLLEIVSYKIIGVHQEDEL 404 (530)
T ss_dssp CCEEEEEECTTSCEEEEEECCBTTCBHHHHHHHHHT--TCCCCTTCCCCEEEEEEETTEEEEEECTTSB
T ss_pred ceEEEEEECCCCceEEEEEEcCCCCCHHHHHHHHHH--hcCCCcCCcccEEEEEEECCEEEEecCCCcc
Confidence 34566555333322 144678889999999999988 88886 455777 488875 444444
No 171
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=39.32 E-value=29 Score=27.06 Aligned_cols=48 Identities=19% Similarity=0.089 Sum_probs=38.3
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCc-eEEEec
Q 032671 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIEN-LRLVFR 58 (136)
Q Consensus 8 ~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~-QRLI~~ 58 (136)
..+.+.|..+++.. ..+.|++.+|+.+|=..|.+ ..|+.... .-|.|.
T Consensus 16 ~~~~~~V~lldgt~-~~~~vd~~tt~~el~~~v~~--~l~L~e~~~FgL~~~ 64 (296)
T 3qij_A 16 FQGHCKVSLLDDTV-YECVVEKHAKGQDLLKRVCE--HLNLLEEDYFGLAIW 64 (296)
T ss_dssp -CCEEEEECTTSCE-EEEECCTTCBHHHHHHHHHH--HHTCSSGGGEEEEEE
T ss_pred ceEEEEEEccCCCE-EEEEECCCCCHHHHHHHHHH--HcCCCCcceeEEEEE
Confidence 56899999999976 88999999999999999998 88876433 555544
No 172
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=38.07 E-value=43 Score=21.51 Aligned_cols=44 Identities=20% Similarity=0.316 Sum_probs=30.2
Q ss_pred CCCCCCCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCC-CCCCceEEEe
Q 032671 1 MGMGEISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANH-LPIENLRLVF 57 (136)
Q Consensus 1 ~~~~e~~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~g-i~~~~QRLI~ 57 (136)
||..+....-+|+|+.+ +++.|-.+|++.+++ +| +++...+++.
T Consensus 1 mg~~~~~~m~tlfV~nL----------~~~~tee~L~~~F~~---~G~i~v~~v~i~~ 45 (95)
T 2lkz_A 1 MGHHHHHHMDTIILRNI----------APHTVVDSIMTALSP---YASLAVNNIRLIK 45 (95)
T ss_dssp CCCCSSCCCCEEEEESC----------CTTCCHHHHHHHSTT---TCCCCGGGEECCC
T ss_pred CCcccCCccCEEEEeCC----------CCcCCHHHHHHHHHh---hCCccEEEEEEEe
Confidence 66666666677777654 455699999998865 55 5666676653
No 173
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=37.73 E-value=20 Score=23.14 Aligned_cols=25 Identities=20% Similarity=0.032 Sum_probs=21.6
Q ss_pred EEEEecCCCcHHHHHHHHHhccCCCCC
Q 032671 23 SRLSVSSPIKVRDLRKLIATSSANHLP 49 (136)
Q Consensus 23 ~~v~v~~~~TV~eLK~~Ia~~~~~gi~ 49 (136)
+.+-|+++.+..+|..+|.. +.+..
T Consensus 4 ~~i~V~~~i~f~~L~~kI~~--kl~~~ 28 (77)
T 1pqs_A 4 FTLLVEKVWNFDDLIMAINS--KISNT 28 (77)
T ss_dssp EEEECTTCCCSHHHHHHHHH--HTTTT
T ss_pred EEEEeCCCCCHHHHHHHHHH--HHccc
Confidence 56889999999999999988 77653
No 174
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=37.51 E-value=35 Score=26.05 Aligned_cols=67 Identities=10% Similarity=0.135 Sum_probs=46.2
Q ss_pred ceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCc-eEEEec---Ce--ecCCCCCCCCCCccccCCCCCC
Q 032671 9 SVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIEN-LRLVFR---GK--VLDDTQDDDDRDDVYLQLSNGD 82 (136)
Q Consensus 9 ~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~-QRLI~~---GK--~L~D~~t~d~~~L~~~~I~dG~ 82 (136)
+|.+.|..+++ . ..+.+++.+|+.+|=+.|.. ..|+.... .=|.|. |. -|+.+.. +.+.+++.+.
T Consensus 1 ~i~~~V~l~d~-~-~~~~v~~~tt~~el~~~v~~--~l~L~e~~~FgL~~~~~~~~~~wLd~~~~-----l~~q~~~~~~ 71 (294)
T 1ef1_A 1 TISVRVTTMDA-E-LEFAIQPNTTGKQLFDQVVK--TIGLREVWFFGLQYQDTKGFSTWLKLNKK-----VTAQDVRKES 71 (294)
T ss_dssp CEEEEEEETTE-E-EEEEECTTCBHHHHHHHHHH--HHTCCCGGGEEEEEEBTTSCEEECCSSSB-----GGGSCBCCCS
T ss_pred CEEEEEEECCc-e-EEEEECCCCcHHHHHHHHHH--HcCCCCcceeEEEEECCCCceeecccccC-----HHhhccCCCC
Confidence 47888999987 3 67999999999999999988 77876433 555553 22 1333334 7766655555
Q ss_pred EE
Q 032671 83 SV 84 (136)
Q Consensus 83 tI 84 (136)
..
T Consensus 72 ~~ 73 (294)
T 1ef1_A 72 PL 73 (294)
T ss_dssp SE
T ss_pred CE
Confidence 44
No 175
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.43 E-value=63 Score=21.57 Aligned_cols=35 Identities=20% Similarity=0.217 Sum_probs=26.2
Q ss_pred CcHHHHHHHHHhccCCCCCCCceEEEe--cCeecCCCCC
Q 032671 31 IKVRDLRKLIATSSANHLPIENLRLVF--RGKVLDDTQD 67 (136)
Q Consensus 31 ~TV~eLK~~Ia~~~~~gi~~~~QRLI~--~GK~L~D~~t 67 (136)
.+..+|+.+... +++++....+|.+ .|-.+.|++-
T Consensus 28 ~sL~EL~~K~~~--~l~l~~~~~~lvLeeDGT~VddEey 64 (91)
T 2eel_A 28 SSLQELISKTLD--ALVIATGLVTLVLEEDGTVVDTEEF 64 (91)
T ss_dssp SSHHHHHHHHHH--HTTCSSSCEEEEETTTCCBCCCHHH
T ss_pred CCHHHHHHHHHH--HhcCCCCCcEEEEeeCCcEEechhh
Confidence 489999999988 8899766777765 3777765433
No 176
>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.6 PDB: 1wxs_A 1l7y_A
Probab=36.35 E-value=93 Score=20.64 Aligned_cols=62 Identities=21% Similarity=0.295 Sum_probs=42.7
Q ss_pred eCCCCCcEE-EEecCCCcHHHHHHHHHhccCCCCCCCceEEEec-CeecCCCCCCCCCCccccCCCCCCEE
Q 032671 16 TIGPAPPSR-LSVSSPIKVRDLRKLIATSSANHLPIENLRLVFR-GKVLDDTQDDDDRDDVYLQLSNGDSV 84 (136)
Q Consensus 16 t~~~~~~~~-v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~-GK~L~D~~t~d~~~L~~~~I~dG~tI 84 (136)
+...+.++. +.|+..+-...+-.-.++ .+++|+..--+|-. |--+...++ -...-++.|+.+
T Consensus 18 tSdpklpfkvlsVPE~~PftAVlkfaaE--eF~vp~~TsAiiT~dGiGInP~Qt-----AGnvFlKhGseL 81 (92)
T 1j0g_A 18 TSDPRLPYKVLSVPESTPFTAVLKFAAE--EFKVPAATSAIITNDGIGINPAQT-----AGNVFLKHGSEL 81 (92)
T ss_dssp TTSTTCCEEEEEEETTSBHHHHHHHHHH--HTTCCSSSEEEECTTSCCCCCSSB-----HHHHHHHTCSEE
T ss_pred ccCCCCCceEEecCccCchHHHHHHHHH--HcCCCccceEEEecCCcccChhhc-----cchhhhhcCcee
Confidence 344445554 699998877777666777 89999988777765 444555455 566667778777
No 177
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=35.67 E-value=74 Score=21.10 Aligned_cols=39 Identities=21% Similarity=0.307 Sum_probs=33.1
Q ss_pred EEEEecCCCcHHHHHHHHHhccCCCCCCCceE-EEecCeecC
Q 032671 23 SRLSVSSPIKVRDLRKLIATSSANHLPIENLR-LVFRGKVLD 63 (136)
Q Consensus 23 ~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QR-LI~~GK~L~ 63 (136)
+.+.|++.+|=-++|++|.. .+++.+.... ++..||.--
T Consensus 30 ~~F~V~~~AnK~eIK~AVE~--lf~VkV~~VnT~~~~gK~kR 69 (93)
T 3r8s_T 30 IVLKVAKDATKAEIKAAVQK--LFEVEVEVVNTLVVKGKVKR 69 (93)
T ss_dssp EEEEECSSCCHHHHHHHHHH--HSCCCCCEEEEEEECCCBCC
T ss_pred EEEEECCCCCHHHHHHHHHH--HcCCceEEEEEEEeCCceee
Confidence 67999999999999999998 9999998854 467787643
No 178
>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C*
Probab=34.32 E-value=51 Score=21.52 Aligned_cols=30 Identities=3% Similarity=-0.062 Sum_probs=22.4
Q ss_pred CCCceEEEEEeCCCCCcEEEEecCCCcHHHH
Q 032671 6 ISESVEITVKTIGPAPPSRLSVSSPIKVRDL 36 (136)
Q Consensus 6 ~~~~m~I~VKt~~~~~~~~v~v~~~~TV~eL 36 (136)
...+++|+|....+.. +.+++.+..|+.+.
T Consensus 3 ~~~m~~V~~~~~~g~~-~~v~~~~g~tLL~a 32 (108)
T 2bt6_A 3 SGDKITVHFINRDGET-LTTKGKIGDSLLDV 32 (108)
T ss_dssp --CEEEEEEECTTSCE-EEEEEETTCBHHHH
T ss_pred CCceEEEEEECCCCCE-EEEEECCCChHHHH
Confidence 3456888888777754 78999999998765
No 179
>2aff_B MKI67 FHA domain interacting nucleolar phosphoPro; NIFK, , phosphoprotein, cell cycle; HET: SEP TPO; NMR {Homo sapiens}
Probab=34.13 E-value=12 Score=21.91 Aligned_cols=18 Identities=39% Similarity=0.495 Sum_probs=13.7
Q ss_pred ccCCCCcccccccccCCC
Q 032671 100 DTCIDDDDLDLKFKLPQS 117 (136)
Q Consensus 100 ~~~~~~~~~~~~~~~p~~ 117 (136)
.+-+|++|+++-||+|.+
T Consensus 26 ~mndDd~D~EIvfK~P~~ 43 (44)
T 2aff_B 26 ELNDDDKDDEIVFKQPIS 43 (44)
T ss_dssp HCCGGGGSCSEEESSCC-
T ss_pred hccCCCccceEEeecCCC
Confidence 345778888999999975
No 180
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=32.32 E-value=50 Score=25.52 Aligned_cols=69 Identities=16% Similarity=0.194 Sum_probs=47.8
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCC-CceEEEe--cCee--cCCCCCCCCCCccccCCCCC
Q 032671 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPI-ENLRLVF--RGKV--LDDTQDDDDRDDVYLQLSNG 81 (136)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~-~~QRLI~--~GK~--L~D~~t~d~~~L~~~~I~dG 81 (136)
...+.+.|...++ . +.+.+++.+|+.+|=+.|.. ..|+.. +-.-|.| .|.. |+.+.. +.+.+++.+
T Consensus 20 ~~~~~~~V~lldg-~-~~~~v~~~t~~~el~~~v~~--~l~L~e~~~FgL~~~~~~~~~wL~~~~~-----i~~q~~~~~ 90 (314)
T 1h4r_A 20 PKTFTVRIVTMDA-E-MEFNCEMKWKGKDLFDLVCR--TLGLRETWFFGLQYTIKDTVAWLKMDKK-----VLDHDVSKE 90 (314)
T ss_dssp -CEEEEEEECSSC-E-EEEEEETTCBHHHHHHHHHH--HHTCCCGGGEEEEEEETTEEEECCTTSB-----GGGSSCCCS
T ss_pred CCeeEEEEEeCCc-e-EEEEeCCCCcHHHHHHHHHH--HhCCCCCccceEEEEeCCcCeeCCCccC-----HHHcCCCCC
Confidence 4668899999988 4 77999999999999999988 778764 3355554 3322 444444 777665555
Q ss_pred CEE
Q 032671 82 DSV 84 (136)
Q Consensus 82 ~tI 84 (136)
...
T Consensus 91 ~~~ 93 (314)
T 1h4r_A 91 EPV 93 (314)
T ss_dssp SSE
T ss_pred CCE
Confidence 544
No 181
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=32.28 E-value=75 Score=26.78 Aligned_cols=48 Identities=10% Similarity=0.117 Sum_probs=39.9
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCC--CceEEEec
Q 032671 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPI--ENLRLVFR 58 (136)
Q Consensus 8 ~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~--~~QRLI~~ 58 (136)
..+.+.|...+|.. ..+.+++.+|+.+|-..|+. ..|+.. +-.-|.+.
T Consensus 215 ~~~~~~V~l~dg~~-~~~~v~~~tt~~el~~~v~~--~lgL~e~~~~FgL~~~ 264 (555)
T 3au4_A 215 QEMTSTVYCHGGGS-CKITINSHTTAGEVVEKLIR--GLAMEDSRNMFALFEY 264 (555)
T ss_dssp CCEEEEEEETTSCE-EEEEECTTCBHHHHHHHHHH--HTTCTTCCSEEEEEEE
T ss_pred CCcceEEEecCCCe-EEEEeCCCCcHHHHHHHHHH--HcCCCCCCCceEEEEE
Confidence 46889999999976 78999999999999999998 889874 45666553
No 182
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=31.55 E-value=1.7e+02 Score=25.23 Aligned_cols=68 Identities=9% Similarity=0.114 Sum_probs=48.3
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCC-CceEEEecC---e--ecCCCCCCCCCCccccCCCCC
Q 032671 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPI-ENLRLVFRG---K--VLDDTQDDDDRDDVYLQLSNG 81 (136)
Q Consensus 8 ~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~-~~QRLI~~G---K--~L~D~~t~d~~~L~~~~I~dG 81 (136)
.+|.+.|..+++ . +.+.|++.+|+.+|=..|.. ..|+.. +-.=|.|.. . -|+.+.. +...+++.+
T Consensus 3 k~i~v~V~llDg-t-~e~~vd~~tt~~ell~~V~~--~LgL~e~~~FGL~~~d~~~~~~WLd~~k~-----i~~q~~~~~ 73 (575)
T 2i1j_A 3 KSMNVRVTTMDA-E-LEFAIQQTTTGKQLFDQVVK--TIGLREVWFFGLQYTDSKGDLTWIKLYKK-----VMQQDVKKE 73 (575)
T ss_dssp CEEEEEEECSSC-E-EEEEEETTCBHHHHHHHHHH--HHTCCCGGGEEEEEEBTTSCEEECCTTSB-----GGGSCBCCC
T ss_pred ceEEEEEEeCCC-e-EEEEECCCCCHHHHHHHHHH--HcCCCCccceeEEEEecCcchhHhhcccc-----HHHhcccCC
Confidence 679999999988 3 67999999999999999988 778753 336665532 1 2333333 776666655
Q ss_pred CEE
Q 032671 82 DSV 84 (136)
Q Consensus 82 ~tI 84 (136)
..+
T Consensus 74 ~~~ 76 (575)
T 2i1j_A 74 NPL 76 (575)
T ss_dssp SSE
T ss_pred CCe
Confidence 544
No 183
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=29.61 E-value=1.1e+02 Score=24.18 Aligned_cols=71 Identities=13% Similarity=0.129 Sum_probs=45.0
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEec-------CeecCCCCCCCCCCccc----cCC
Q 032671 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFR-------GKVLDDTQDDDDRDDVY----LQL 78 (136)
Q Consensus 10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~-------GK~L~D~~t~d~~~L~~----~~I 78 (136)
+-|+|-...+.. ..|.|++++|++||=+.++. +.++....-..+|- -+.|.|.+. +.+ ...
T Consensus 32 ~ivkv~~~D~ss-~~l~V~~~~TA~dv~~~L~~--k~~~~~~~~W~L~E~~~~l~lER~ledhE~-----V~dvl~~W~~ 103 (281)
T 4gmv_A 32 LVIRVHMSDDSS-KTMMVDERQTVRQVLDNLMD--KSHCGYSLDWSLVETVSELQMERIFEDHEN-----LVENLLNWTR 103 (281)
T ss_dssp EEEEEEETTSCE-EEEEEETTCBHHHHHHHHHH--HSCCCCCTTCEEEEEEGGGTEEEECCTTSB-----HHHHHTTSCT
T ss_pred EEEEEEecCCCE-EEEEECCCCcHHHHHHHHHH--hcCCCCCCCeEEEEEcCCccceeccccchh-----HHHHHHhccc
Confidence 456666667754 78999999999999888887 77765444322221 245655554 433 345
Q ss_pred CCCCEEEEEe
Q 032671 79 SNGDSVIAAV 88 (136)
Q Consensus 79 ~dG~tIlv~~ 88 (136)
.....+++.-
T Consensus 104 ds~n~l~f~~ 113 (281)
T 4gmv_A 104 DSQNKLIFME 113 (281)
T ss_dssp TCCCEEEEEC
T ss_pred CCCceEEEEe
Confidence 5556665543
No 184
>3hui_A Ferredoxin; cytochrome P450, electron transfer, iron, iron-sulfur, metal-binding, electron transport; 2.01A {Rhodopseudomonas palustris}
Probab=29.48 E-value=85 Score=21.56 Aligned_cols=32 Identities=13% Similarity=0.015 Sum_probs=25.1
Q ss_pred CCCCCceEEEEEeCCCCCcEEEEecCCCcHHHH
Q 032671 4 GEISESVEITVKTIGPAPPSRLSVSSPIKVRDL 36 (136)
Q Consensus 4 ~e~~~~m~I~VKt~~~~~~~~v~v~~~~TV~eL 36 (136)
+....+++|+|....+.. ..+++++..|+.+.
T Consensus 16 ~~~~~M~~Vt~~~~~G~~-~~v~~~~G~tLL~a 47 (126)
T 3hui_A 16 PRGSHMAKINFVDHTGET-RTVEVEEGATVMEA 47 (126)
T ss_dssp CTTCSEEEEEEECTTSCE-EEEEEETTSBHHHH
T ss_pred CCCCCceEEEEEeCCCCE-EEEEECCCCcHHHH
Confidence 345677899999777755 78999999999874
No 185
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=28.12 E-value=1.2e+02 Score=23.54 Aligned_cols=42 Identities=17% Similarity=0.212 Sum_probs=26.6
Q ss_pred EEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEE
Q 032671 11 EITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRL 55 (136)
Q Consensus 11 ~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRL 55 (136)
-|+|-...+.. ..|.|++++|+++|=..++. +.++..+.-..
T Consensus 10 ivkv~~~d~ss-~~l~V~~~mta~ev~~~l~~--k~~~~~~~~W~ 51 (256)
T 3hk0_A 10 DVKVFSEDGTS-KVVEILADMTARDLCQLLVY--KSHSVDDNSWT 51 (256)
T ss_dssp EEEEEETTSCE-EEEEECTTCBHHHHHHHHHC--CC-------EE
T ss_pred EEEEEecCCcE-EEEEECCCCCHHHHHHHHHH--hcCCCCCCCEE
Confidence 34455566644 78999999999999999887 77765444333
No 186
>4a6q_A Histone deacetylase complex subunit SAP18; transcription, splicing, RNA metabolism, ubiquitin-like; HET: MSE; 1.50A {Mus musculus} PDB: 4a90_A* 2hde_A 4a8x_C
Probab=27.91 E-value=40 Score=24.43 Aligned_cols=63 Identities=17% Similarity=0.237 Sum_probs=37.4
Q ss_pred EEEecCCCcHHHHHHHHHhccCCCCCCC-c--eEEEe-----------------cCeecCCCCCCCCCCccccCCCCCCE
Q 032671 24 RLSVSSPIKVRDLRKLIATSSANHLPIE-N--LRLVF-----------------RGKVLDDTQDDDDRDDVYLQLSNGDS 83 (136)
Q Consensus 24 ~v~v~~~~TV~eLK~~Ia~~~~~gi~~~-~--QRLI~-----------------~GK~L~D~~t~d~~~L~~~~I~dG~t 83 (136)
.|-.=.++|+.||=..|.++....-... + .+++| .|+.- .+|+++|.+++++-||.
T Consensus 57 QIYTW~daTLrEL~~Lvk~~~p~ar~~gtrl~F~~VypD~r~~ry~~kdlGsv~~g~~~----~dd~kTL~~~rF~iGDy 132 (143)
T 4a6q_A 57 QIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFMDLKRPGYRVKEIGSTMSGRKG----TDDSMTLQSQKFQIGDY 132 (143)
T ss_dssp EEEECTTCBHHHHHHHHHHHCGGGGSTTCEEEEEEEEECSSSSSEEEEEEEEEETTBCC----TTTTCBTGGGTCCTTCE
T ss_pred EEeeCCCCCHHHHHHHHHHhCccccCCCCEEEEEEEcccCCCCceeeccCCEEecCCCC----CcccccHHHCCCcCCCE
Confidence 3444467999999988876222110000 0 33333 33332 23557799999999999
Q ss_pred EEEEecC
Q 032671 84 VIAAVKP 90 (136)
Q Consensus 84 Ilv~~~p 90 (136)
|-|...|
T Consensus 133 idvaI~p 139 (143)
T 4a6q_A 133 LDIAITP 139 (143)
T ss_dssp EEEEEEC
T ss_pred EEEEEeC
Confidence 9655544
No 187
>1f2r_I Inhibitor of caspase-activated DNAse; alpha-beta roll, protein-protein complex, DNA binding protein; NMR {Mus musculus} SCOP: d.15.2.1
Probab=25.97 E-value=99 Score=20.95 Aligned_cols=50 Identities=18% Similarity=0.222 Sum_probs=32.4
Q ss_pred CcHHHHHHHHHhccCCCCCCC--ceEEE--ecCeecCCCCCCCCCCccccCCCCCCEEEEEec
Q 032671 31 IKVRDLRKLIATSSANHLPIE--NLRLV--FRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAVK 89 (136)
Q Consensus 31 ~TV~eLK~~Ia~~~~~gi~~~--~QRLI--~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~~~ 89 (136)
.++.+|+.+... +++++.. ..+|. ..|-.+.|+.- ... +.++..++++..
T Consensus 37 ~SL~EL~~K~~~--~l~l~~~~~~~~lvLeeDGT~VddEeY-----F~t--Lp~nT~lmvL~~ 90 (100)
T 1f2r_I 37 SSLEELRSKACE--LLAIDKSLTPITLVLAEDGTIVDDDDY-----FLC--LPSNTKFVALAC 90 (100)
T ss_dssp SSHHHHHHHHHH--HHCCCGGGCSCEEEESSSCCBCCSSSS-----SSS--SCSCCEEEEECS
T ss_pred CCHHHHHHHHHH--HhccCCCCCceEEEEeeCCcEEechhH-----hhc--CCCCCEEEEEcC
Confidence 489999999988 8888753 35554 35888876655 443 334444455443
No 188
>2y5c_A Adrenodoxin-like protein, mitochondrial; electron transport, iron-sulfur cluster biogenesis; 1.70A {Homo sapiens}
Probab=25.90 E-value=92 Score=20.27 Aligned_cols=28 Identities=14% Similarity=0.010 Sum_probs=21.8
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHH
Q 032671 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDL 36 (136)
Q Consensus 8 ~~m~I~VKt~~~~~~~~v~v~~~~TV~eL 36 (136)
.+++|++...++.. +.+++++..|+.+.
T Consensus 4 ~m~~v~~~~~~g~~-~~~~~~~g~tlL~a 31 (109)
T 2y5c_A 4 DVVNVVFVDRSGQR-IPVSGRVGDNVLHL 31 (109)
T ss_dssp CEEEEEEECTTSCE-EEEEEETTCBHHHH
T ss_pred CcEEEEEEcCCCCE-EEEEECCCCcHHHH
Confidence 46788887777754 67999999999775
No 189
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Probab=25.83 E-value=1.3e+02 Score=26.47 Aligned_cols=60 Identities=12% Similarity=0.192 Sum_probs=39.6
Q ss_pred EEEEecCCCcHHHHHHHHHhccCCC--CCCC--------ceEEEecCe--e----cCCCCCCCCCCccccCCCCCCEEEE
Q 032671 23 SRLSVSSPIKVRDLRKLIATSSANH--LPIE--------NLRLVFRGK--V----LDDTQDDDDRDDVYLQLSNGDSVIA 86 (136)
Q Consensus 23 ~~v~v~~~~TV~eLK~~Ia~~~~~g--i~~~--------~QRLI~~GK--~----L~D~~t~d~~~L~~~~I~dG~tIlv 86 (136)
..+.++.+.|+.+|-+.+.. +.. +... ..+++|... . ..+.. +++|.++|+++|+.|.|
T Consensus 714 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~~~~~~~l---~~~l~~l~~~~~~~~~~ 788 (805)
T 2nvu_B 714 QNIQFSPSAKLQEVLDYLTN--SASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNL---SKTLKELGLVDGQELAV 788 (805)
T ss_dssp EEEEECTTSBHHHHHHHHHH--CTTTCCSSCEEEEEETTEEEEEECCSSHHHHHHHGGGG---GSBTTTTTCCTTCEEEE
T ss_pred EEEEECCcChHHHHHHHHHh--hhccCcccceEEEEccCCCcEEEecCccchhhhhHhhh---cCCHHHcCCCCCCEEEE
Confidence 45788888999999888876 533 3221 246777632 1 11221 25699999999998866
Q ss_pred E
Q 032671 87 A 87 (136)
Q Consensus 87 ~ 87 (136)
-
T Consensus 789 ~ 789 (805)
T 2nvu_B 789 A 789 (805)
T ss_dssp E
T ss_pred E
Confidence 3
No 190
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=25.64 E-value=1e+02 Score=20.35 Aligned_cols=38 Identities=18% Similarity=0.251 Sum_probs=32.2
Q ss_pred EEEEecCCCcHHHHHHHHHhccCCCCCCCceE-EEecCeec
Q 032671 23 SRLSVSSPIKVRDLRKLIATSSANHLPIENLR-LVFRGKVL 62 (136)
Q Consensus 23 ~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QR-LI~~GK~L 62 (136)
+.+.|++.+|=-++|++|.. .+++.+.... ++..||.-
T Consensus 24 ~~F~V~~~AnK~qIK~aVe~--lf~VkV~~VnT~~~~gK~k 62 (92)
T 3tve_T 24 YTFWVHPKATKTEIKNAVET--AFKVKVVKVNTLHVRGKKK 62 (92)
T ss_dssp EEEEECTTCCHHHHHHHHHH--HTTCCEEEEEEEEECCCEE
T ss_pred EEEEECCCCCHHHHHHHHHH--HhCCceeeeeeeeeCCcee
Confidence 77899999999999999998 9999988854 46777654
No 191
>1jq4_A Methane monooxygenase component C; [2Fe-2S] ferredoxin, oxidoreductase; NMR {Methylococcus capsulatus str} SCOP: d.15.4.2
Probab=25.32 E-value=93 Score=19.74 Aligned_cols=29 Identities=21% Similarity=0.048 Sum_probs=21.6
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHH
Q 032671 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLR 37 (136)
Q Consensus 8 ~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK 37 (136)
.+++|+|....+.. ..+++++..|+.+.=
T Consensus 3 ~~~~v~~~~~~~~~-~~~~~~~g~tlL~a~ 31 (98)
T 1jq4_A 3 RVHTITAVTEDGES-LRFECRSDEDVITAA 31 (98)
T ss_dssp CEEEEEEEETTTEE-EEEEEESCCTHHHHH
T ss_pred CcEEEEEEecCCCc-EEEEeCCCChHHHHH
Confidence 36788888765544 678999999988764
No 192
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=25.01 E-value=1.4e+02 Score=21.59 Aligned_cols=55 Identities=18% Similarity=0.233 Sum_probs=35.0
Q ss_pred EEEecCCCcHHHHHHHHHhccCCC-CC---------CCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 032671 24 RLSVSSPIKVRDLRKLIATSSANH-LP---------IENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAA 87 (136)
Q Consensus 24 ~v~v~~~~TV~eLK~~Ia~~~~~g-i~---------~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~ 87 (136)
.++++. .||.+|.+.+.. ... +. .....+..+|....... -.+.-|++||.|.++
T Consensus 17 ~~ev~~-~TV~dLl~~L~~--~~p~l~~~l~~~~~l~~~v~VaVNg~~v~~~~------~~dt~L~dGDeVai~ 81 (168)
T 1v8c_A 17 QLELPG-ATVGEVLENLVR--AYPALKEELFEGEGLAERVSVFLEGRDVRYLQ------GLSTPLSPGATLDLF 81 (168)
T ss_dssp EEECCC-SBHHHHHHHHHH--HCGGGHHHHEETTEECTTCEEEETTEEGGGTT------GGGCBCCTTCEEEEE
T ss_pred eEEECC-CcHHHHHHHHHh--hChhhhhhhhcccccCCcEEEEECCEECCCcC------CCccCCCCCCEEEEE
Confidence 456665 899999999876 421 10 23345677788775321 234579999999443
No 193
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=24.97 E-value=1.1e+02 Score=26.85 Aligned_cols=47 Identities=17% Similarity=0.192 Sum_probs=39.0
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCC-CCceEEEe
Q 032671 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLP-IENLRLVF 57 (136)
Q Consensus 8 ~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~-~~~QRLI~ 57 (136)
..|.+.|...++.. ..+.|++.+|+.+|=..|+. ..|+. .+-.-|.|
T Consensus 262 ~~i~~~V~llDgt~-~~~~vds~Tt~~ell~~V~~--~LgL~e~~~FgL~~ 309 (655)
T 3pvl_A 262 KPIMLPVTFMDGTT-KTLLTDSATTARELCNALAD--KISLKDRFGFSLYI 309 (655)
T ss_dssp CCEEEEEEETTSCE-EEEEECTTCBHHHHHHHHHH--HTTCSSCTTEEEEE
T ss_pred CceEEEEEecCCce-EEEEEccCCcHHHHHHHHHH--HcCCcccccceeEE
Confidence 56889999999976 88999999999999999998 77764 44466665
No 194
>2nnz_A Hypothetical protein; beta-barrel, structural genomics, ontario centre for structu proteomics, OCSP, unknown function; NMR {Archaeoglobus fulgidus}
Probab=24.38 E-value=36 Score=24.59 Aligned_cols=36 Identities=14% Similarity=0.270 Sum_probs=26.5
Q ss_pred CCCCCCceEEEEEeCCCCCcEEEEecCCC---cHHHHHHHH
Q 032671 3 MGEISESVEITVKTIGPAPPSRLSVSSPI---KVRDLRKLI 40 (136)
Q Consensus 3 ~~e~~~~m~I~VKt~~~~~~~~v~v~~~~---TV~eLK~~I 40 (136)
|++....|+|.|...+ ..+..++..+. |.++|.+++
T Consensus 23 ~~~~~~~~~I~i~~~~--~~~~a~L~D~~aP~Ta~~f~~~L 61 (153)
T 2nnz_A 23 MGERGVEMRLRIRFES--AECEVELYEEWAPETVRAIADAL 61 (153)
T ss_dssp CCCCSSCCCEEEEETT--EEEEECCCTTSCHHHHHHHHHTC
T ss_pred cccccCCeEEEEEECC--EEEEEEEcCCCCHHHHHHHHHhC
Confidence 5666667888888744 33778888888 898887765
No 195
>2bn8_A CEDA, cell division activator CEDA; cell division activator protein, cell cycle protein; NMR {Escherichia coli} PDB: 2d35_A
Probab=23.92 E-value=13 Score=24.31 Aligned_cols=15 Identities=33% Similarity=0.975 Sum_probs=12.9
Q ss_pred ccccCCCChHHHHHH
Q 032671 111 KFKLPQSTSRWKRKL 125 (136)
Q Consensus 111 ~~~~p~~~~~~~~~~ 125 (136)
-|-+|+++.||-.++
T Consensus 65 afsvpesaqrwa~q~ 79 (87)
T 2bn8_A 65 AFTVPESAQRWANQI 79 (87)
T ss_dssp CBSSHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHh
Confidence 488999999998775
No 196
>2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur, iron, transport, ferredoxin, adrenodoxin-like, electron transport; 2.60A {Schizosaccharomyces pombe}
Probab=22.44 E-value=1.3e+02 Score=19.15 Aligned_cols=28 Identities=11% Similarity=0.025 Sum_probs=21.5
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHH
Q 032671 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDL 36 (136)
Q Consensus 8 ~~m~I~VKt~~~~~~~~v~v~~~~TV~eL 36 (136)
.+++|+|...++.. ..+++++..|+.+.
T Consensus 2 ~~~~v~~~~~~g~~-~~~~~~~g~tlL~a 29 (103)
T 2wlb_A 2 TGIKVFFVTPEGRE-IMIEGNEGDSILDL 29 (103)
T ss_dssp CCEEEEEECTTCCE-EEEEECTTCBHHHH
T ss_pred CceEEEEEeCCCCE-EEEEECCCCHHHHH
Confidence 45778888666654 68899999998775
No 197
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=21.51 E-value=1.8e+02 Score=19.06 Aligned_cols=49 Identities=16% Similarity=0.254 Sum_probs=32.1
Q ss_pred CCceEEEEEeCCCCCcEEEEec--CCCcHHHHHHHHHhccCCCCCCCceEEEecC
Q 032671 7 SESVEITVKTIGPAPPSRLSVS--SPIKVRDLRKLIATSSANHLPIENLRLVFRG 59 (136)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~v~v~--~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~G 59 (136)
++.++|+.|.-..- ..+.++ ...+..+|...++. ...++....-+-|..
T Consensus 4 ~~~l~vKskf~aE~--RRFs~d~~~~~~fe~f~~lv~~--lh~L~~~~f~i~Y~D 54 (86)
T 1wmh_B 4 MSIVEVKSKFDAEF--RRFALPRASVSGFQEFSRLLRA--VHQIPGLDVLLGYTD 54 (86)
T ss_dssp -CEEEEEEEETTEE--EEEEEEGGGCCCHHHHHHHHHH--HTTCTTCCCEEEEEC
T ss_pred CCEEEEEeecCCee--eEeEccCCCCCCHHHHHHHHHH--HcCCCCCCEEEEEEC
Confidence 34555555553332 346665 45899999999998 777766667776763
No 198
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*
Probab=21.23 E-value=3.6e+02 Score=22.46 Aligned_cols=70 Identities=20% Similarity=0.229 Sum_probs=40.0
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhc-------cC--CC--------CCC-Cc-eEEEecC--eecCCCCCC
Q 032671 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATS-------SA--NH--------LPI-EN-LRLVFRG--KVLDDTQDD 68 (136)
Q Consensus 10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~-------~~--~g--------i~~-~~-QRLI~~G--K~L~D~~t~ 68 (136)
++++|+.......+.|+++..+++.++=++.++. .. .| +.. ++ -..++.+ +.+.
T Consensus 319 VtytV~~~~~~~~~~Vtv~~gssll~vLk~A~e~~~F~F~~~es~~G~fItSInG~~~~~~~YW~l~~~p~~pl~----- 393 (414)
T 2bb6_A 319 VLLKVSGISPSYRHSVSVPAGSSLEDILKNAQEHGRFRFRTQASLSGPFLTSVLGRKAGEREFWQVLRDPDTPLQ----- 393 (414)
T ss_dssp EEEEEESSSSCEEEEEEEETTCCHHHHHHHHHHSSSCCEEEECCTTSCEEEEETTEECCTTEEEEEEETTTEECS-----
T ss_pred EEEEEeeCCCccceEEEecCCCCHHHHHHHHHhccCCceEeeecCCCceEEEECCCccCCCceEEEEECCCCccc-----
Confidence 4445554333333568999999988887777661 01 11 111 22 2233333 4443
Q ss_pred CCCCccccCCCCCCEEEE
Q 032671 69 DDRDDVYLQLSNGDSVIA 86 (136)
Q Consensus 69 d~~~L~~~~I~dG~tIlv 86 (136)
..+.+|.+++|++|.+
T Consensus 394 --~Gv~~y~~~~ge~I~f 409 (414)
T 2bb6_A 394 --QGIADYRPKDGETIEL 409 (414)
T ss_dssp --SCTTTCCCCTTCEEEE
T ss_pred --ccccceecCCCCEEEE
Confidence 3488888899988854
No 199
>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=21.08 E-value=1.3e+02 Score=28.42 Aligned_cols=68 Identities=10% Similarity=0.123 Sum_probs=45.4
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCC------CCCCceEEEecCe-----ecCCCCCCCCCCccc
Q 032671 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANH------LPIENLRLVFRGK-----VLDDTQDDDDRDDVY 75 (136)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~g------i~~~~QRLI~~GK-----~L~D~~t~d~~~L~~ 75 (136)
++.+.|.+-.++|-. +.++++.++|+.++|+.+.+.++.. ..++.-.+.+-.+ .+.|+ +..|.+
T Consensus 49 ~~~v~vd~LLPnGi~-i~~~v~~~~Tl~~iK~~lw~~A~~~pl~~~l~~~~~Y~f~~i~~~~e~ee~~de----~~~l~~ 123 (1092)
T 2y3a_A 49 DGAISVDFLLPTGIY-IQLEVPREATISYIKQMLWKQVHNYPMFNLLMDIDSYMFACVNQTAVYEELEDE----TRRLCD 123 (1092)
T ss_dssp CSEEEEEEECTTCCE-EEEEEETTCBHHHHHHHHHHHGGGSTTTTSCCCGGGEEEEEEBSSSCEEECCCT----TSBSGG
T ss_pred CCceEEEEECCCceE-EEEEecCcccHHHHHHHHHHHHHhCCchhccCCcceeEEEEecCCceEEEeecC----ceeeEe
Confidence 366888888888865 7899999999999999998733331 2355666665222 13332 245887
Q ss_pred cCCC
Q 032671 76 LQLS 79 (136)
Q Consensus 76 ~~I~ 79 (136)
+..-
T Consensus 124 ~~~~ 127 (1092)
T 2y3a_A 124 VRPF 127 (1092)
T ss_dssp GCBS
T ss_pred eccc
Confidence 7644
No 200
>2dnf_A Doublecortin domain-containing protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens}
Probab=20.81 E-value=1.7e+02 Score=19.52 Aligned_cols=54 Identities=19% Similarity=0.281 Sum_probs=35.0
Q ss_pred EEEecC--CCcHHHHHHHHHhccCCCCCCCceEEE--ecCeecCCCCCCCCCCccccCCCCCCEEEEEecC
Q 032671 24 RLSVSS--PIKVRDLRKLIATSSANHLPIENLRLV--FRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAVKP 90 (136)
Q Consensus 24 ~v~v~~--~~TV~eLK~~Ia~~~~~gi~~~~QRLI--~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~~~p 90 (136)
.+-++. --|..+|.+.|.+ +.+++....|-+ ..|+.+.+ |++ |.+|+ +||++..
T Consensus 31 ~v~i~~~~~~sfe~lL~~lT~--~v~l~~GaVr~Lyt~~G~~V~~--------l~d--l~dg~-~YVa~g~ 88 (108)
T 2dnf_A 31 RLLIPRKTLNQWDHVLQMVTE--KITLRSGAVHRLYTLEGKLVES--------GAE--LENGQ-FYVAVGR 88 (108)
T ss_dssp EEEECHHHHTCHHHHHHHHHH--HCCCTTSSCCEEEETTCCEESS--------TTS--CCSSC-BEEEECS
T ss_pred EEEECCccccCHHHHHHHHHH--hhCCCCCCEEEEEcCCCCEeCC--------HHH--hCCCC-EEEEeCC
Confidence 455554 2689999999988 777775433333 45777753 665 45888 6555543
No 201
>2i1s_A Hypothetical protein; methanosarcina mazei,MAD, PSI-2,MCSG, structural genomics, protein structure initiative; 2.30A {Methanosarcina mazei} SCOP: d.343.1.1
Probab=20.50 E-value=1.1e+02 Score=22.17 Aligned_cols=43 Identities=19% Similarity=0.227 Sum_probs=31.3
Q ss_pred CceEEEEEeCCCCCc--EEEEecCCCcHHHHHHHHHhccCCCCCCCc
Q 032671 8 ESVEITVKTIGPAPP--SRLSVSSPIKVRDLRKLIATSSANHLPIEN 52 (136)
Q Consensus 8 ~~m~I~VKt~~~~~~--~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~ 52 (136)
...+++|...+.+.. ..|.|+.+.|+.+|=..|.. .+|..-..
T Consensus 7 ~iy~lrV~L~~~~p~iWRri~Vp~~~TL~~LH~vIq~--afgw~~~H 51 (188)
T 2i1s_A 7 KVYHLKLSIKGITPQIWRRIQVPENYTFLDLHKAIQA--VMDWEDYH 51 (188)
T ss_dssp EEEEEEEEETTCSSCEEEEEEEETTCBHHHHHHHHHH--HTTCCCCS
T ss_pred cEEEEEEEECCCCCCeEEEEEECCCCCHHHHHHHHHH--HhCCCCCE
Confidence 345566665543332 35899999999999999988 88877554
Done!