BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032674
         (136 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1YDU|A Chain A, Solution Nmr Structure Of At5g01610, An Arabidopsis
           Thaliana Protein Containing Duf538 Domain
          Length = 170

 Score = 30.0 bits (66), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 18/65 (27%), Positives = 37/65 (56%), Gaps = 6/65 (9%)

Query: 69  LVSYDTEITGYVNKNVIKKLKGVKAKELMLWPPVSEIKVDDPPTGKIHFKSLAGITKTFP 128
           ++ + T +TG++ K  +  ++G+K K +M+W  V+ I  D     K++F   AG+ K+  
Sbjct: 101 VLKFTTTVTGHLEKGKLTDVEGIKTK-VMIWVKVTSISTD---ASKVYF--TAGMKKSRS 154

Query: 129 IEAFA 133
            +A+ 
Sbjct: 155 RDAYG 159


>pdb|3OME|A Chain A, Crystal Structure Of A Probable Enoyl-Coa Hydratase From
           Mycobacterium Smegmatis
 pdb|3OME|B Chain B, Crystal Structure Of A Probable Enoyl-Coa Hydratase From
           Mycobacterium Smegmatis
 pdb|3OME|C Chain C, Crystal Structure Of A Probable Enoyl-Coa Hydratase From
           Mycobacterium Smegmatis
 pdb|3OME|D Chain D, Crystal Structure Of A Probable Enoyl-Coa Hydratase From
           Mycobacterium Smegmatis
 pdb|3OME|E Chain E, Crystal Structure Of A Probable Enoyl-Coa Hydratase From
           Mycobacterium Smegmatis
 pdb|3OME|F Chain F, Crystal Structure Of A Probable Enoyl-Coa Hydratase From
           Mycobacterium Smegmatis
          Length = 282

 Score = 29.6 bits (65), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 15/55 (27%), Positives = 27/55 (49%)

Query: 42  VGFVQTTGYMWILQKKKVEHSFKMVKKLVSYDTEITGYVNKNVIKKLKGVKAKEL 96
           +G V+  G+ W L  +K +      + L + + E TG VN+ V +     + +EL
Sbjct: 162 IGGVEYHGHTWELGPRKAKEILFTGRALTAEEAERTGMVNRVVARDELDAQTREL 216


>pdb|1DUX|C Chain C, Elk-1DNA STRUCTURE REVEALS HOW RESIDUES DISTAL FROM DNA-
          Binding Surface Affect Dna-Recognition
 pdb|1DUX|F Chain F, Elk-1DNA STRUCTURE REVEALS HOW RESIDUES DISTAL FROM DNA-
          Binding Surface Affect Dna-Recognition
          Length = 94

 Score = 25.8 bits (55), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 51 MWILQKKKVEHSFKMVKKLVSYDTEITGYVNKNVIKKLKGVK 92
          +W L+K K   ++  + + + Y      Y +KN+I+K+ G K
Sbjct: 45 LWGLRKNKTNMNYDKLSRALRY------YYDKNIIRKVSGQK 80


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.133    0.383 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,904,464
Number of Sequences: 62578
Number of extensions: 98266
Number of successful extensions: 244
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 242
Number of HSP's gapped (non-prelim): 6
length of query: 136
length of database: 14,973,337
effective HSP length: 88
effective length of query: 48
effective length of database: 9,466,473
effective search space: 454390704
effective search space used: 454390704
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)