BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032674
(136 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9M015|Y5161_ARATH Uncharacterized protein At5g01610 OS=Arabidopsis thaliana
GN=At5g01610 PE=1 SV=1
Length = 170
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 58/110 (52%), Gaps = 8/110 (7%)
Query: 23 LLEEFGLPLGLLPLADVIEVGFVQTTGYMWILQKKKVEHSFKMVKKLVSYDTEITGYVNK 82
LL+E+ LP+G+ P D F + T + +L E +K ++ + T +TG++ K
Sbjct: 57 LLKEYDLPIGIFP-GDATNYEFDEETKKLTVLIPSICEVGYKD-SSVLKFTTTVTGHLEK 114
Query: 83 NVIKKLKGVKAKELMLWPPVSEIKVDDPPTGKIHFKSLAGITKTFPIEAF 132
+ ++G+K K +M+W V+ I D K++F AG+ K+ +A+
Sbjct: 115 GKLTDVEGIKTK-VMIWVKVTSISTD---ASKVYF--TAGMKKSRSRDAY 158
>sp|Q8UZB6|RDRP_GFKVM RNA replication protein OS=Grapevine fleck virus (isolate Italy/MT48)
PE=4 SV=1
Length = 1949
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 110 PPTGKIHFKSLAGITKTFPIEAFAAGQ 136
PP G IH AG K++PI+ A Q
Sbjct: 1039 PPVGLIHIAGFAGCGKSYPIQQLLATQ 1065
>sp|Q9UKM7|MA1B1_HUMAN Endoplasmic reticulum mannosyl-oligosaccharide
1,2-alpha-mannosidase OS=Homo sapiens GN=MAN1B1 PE=1
SV=2
Length = 699
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 12/81 (14%)
Query: 12 GHEEGMKVASSLLEEFGLPLGLLPLADVIEVGFVQTTGYMWILQ-KKKVEHSFKMVKKLV 70
GH+E V+ S E FGL L L+ D MWIL +K+ E + K V K +
Sbjct: 270 GHDELKPVSRSFSEWFGLGLTLIDALDT-----------MWILGLRKEFEEARKWVSKKL 318
Query: 71 SYDTEITGYVNKNVIKKLKGV 91
++ ++ + ++ I+ L G+
Sbjct: 319 HFEKDVDVNLFESTIRILGGL 339
>sp|Q6WB93|L_HMPVC RNA-directed RNA polymerase L OS=Human metapneumovirus (strain
CAN97-83) GN=L PE=3 SV=1
Length = 2005
Score = 31.2 bits (69), Expect = 2.2, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 83 NVIKKLKGVKAKELMLWPPVSEIKVDDPPT--GKIHFKSLAGIT 124
+V+++L G K+L+L P + EI + PP GK ++K + IT
Sbjct: 1322 SVVEQLTGRSPKQLVLIPQLEEIDIMPPPVFQGKFNYKLVDKIT 1365
>sp|Q043R6|TRMFO_LACGA Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO
OS=Lactobacillus gasseri (strain ATCC 33323 / DSM 20243)
GN=trmFO PE=3 SV=1
Length = 438
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 6/64 (9%)
Query: 60 EHSFKMVKKLVSYDTE-ITGYVNKNVIK-----KLKGVKAKELMLWPPVSEIKVDDPPTG 113
E F K LVS +T + G+ +KNV + ++ + ++ ML+ P+ + ++DP TG
Sbjct: 197 EEFFNFYKNLVSAETATLHGFEDKNVFEGCMPIEVMAKRGEKTMLFGPLKPVGLEDPKTG 256
Query: 114 KIHF 117
K +
Sbjct: 257 KTPY 260
>sp|Q6FL25|RT09_CANGA 37S ribosomal protein S9, mitochondrial OS=Candida glabrata (strain
ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=MRPS9 PE=3 SV=1
Length = 288
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 25/108 (23%)
Query: 13 HEEGMKVASSLLEEFGLPLGL-LPLADV-IEVGFVQTTGYMWI-------------LQKK 57
HEE + SLL+++ LP LP AD+ E Q WI L+ +
Sbjct: 52 HEEKISRLESLLKKYALPSSQKLPGADISAEENLKQNPRPSWISFSDYALIGGGTRLKPR 111
Query: 58 KVEHSFKMVKKLVSYD---------TEITGYVNKNVIKKLKGVKAKEL 96
EH +++ KL + D E++ Y+ K+ I+ K + KEL
Sbjct: 112 HYEHFIQLLNKLNNIDPQLVNTEIKNELSKYIKKSSIQSQK-TQQKEL 158
>sp|A2AJ15|MA1B1_MOUSE Endoplasmic reticulum mannosyl-oligosaccharide
1,2-alpha-mannosidase OS=Mus musculus GN=Man1b1 PE=2
SV=1
Length = 658
Score = 29.3 bits (64), Expect = 7.9, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 14/75 (18%)
Query: 12 GHEEGMKVASSLLEEFGLPLGLLPLADVIEVGFVQTTGYMWILQKKKVEHSFKMVKKLVS 71
GH+E V+ + E FGL L L+ D MWIL K+ FK +K VS
Sbjct: 229 GHDELKPVSKTFSEWFGLGLTLIDALDT-----------MWILGLKQ---EFKQARKWVS 274
Query: 72 YDTEITGYVNKNVIK 86
+ + V+ N+ +
Sbjct: 275 ENLDFQKNVDVNLFE 289
>sp|P46898|RL6_BACSU 50S ribosomal protein L6 OS=Bacillus subtilis (strain 168) GN=rplF
PE=3 SV=2
Length = 179
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 6/67 (8%)
Query: 67 KKLVSYDTEITGYVNKNVIKKLKGVKAKELMLWPPVSEIKVDDP------PTGKIHFKSL 120
KKL+ +++T +N N +KG K + + P EIKV+D P+ + ++L
Sbjct: 6 KKLLEIPSDVTVTLNDNNTVAVKGPKGELTRTFHPDMEIKVEDNVLTVARPSDQKEHRAL 65
Query: 121 AGITKTF 127
G T++
Sbjct: 66 HGTTRSL 72
>sp|P19419|ELK1_HUMAN ETS domain-containing protein Elk-1 OS=Homo sapiens GN=ELK1 PE=1
SV=2
Length = 428
Score = 28.9 bits (63), Expect = 9.6, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 14/86 (16%)
Query: 51 MWILQKKKVEHSFKMVKKLVSYDTEITGYVNKNVIKKLKGVK-AKELMLWPPVSEIKVDD 109
+W L+K K ++ + + + Y Y +KN+I+K+ G K + + +P V+ +D
Sbjct: 45 LWGLRKNKTNMNYDKLSRALRY------YYDKNIIRKVSGQKFVYKFVSYPEVAGCSTED 98
Query: 110 -PPTGKIHFKSLAGITKTFPIEAFAA 134
PP ++ +T T P A AA
Sbjct: 99 CPPQPEV------SVTSTMPNVAPAA 118
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.136 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,451,844
Number of Sequences: 539616
Number of extensions: 1961177
Number of successful extensions: 5831
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 5826
Number of HSP's gapped (non-prelim): 25
length of query: 136
length of database: 191,569,459
effective HSP length: 101
effective length of query: 35
effective length of database: 137,068,243
effective search space: 4797388505
effective search space used: 4797388505
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)