Query 032674
Match_columns 136
No_of_seqs 102 out of 345
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 04:29:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032674.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032674hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04398 DUF538: Protein of un 100.0 2.6E-47 5.7E-52 277.6 5.9 110 19-135 1-110 (110)
2 cd03697 EFTU_II EFTU_II: Elong 49.8 41 0.00088 22.5 4.4 35 73-109 15-53 (87)
3 PF03975 CheD: CheD chemotacti 47.5 29 0.00063 24.8 3.5 36 18-57 67-108 (114)
4 cd07110 ALDH_F10_BADH Arabidop 46.0 21 0.00045 31.0 3.0 30 6-35 149-181 (456)
5 PRK09457 astD succinylglutamic 45.5 19 0.00042 31.6 2.8 30 6-35 163-195 (487)
6 PRK13968 putative succinate se 42.5 25 0.00054 30.8 3.0 31 6-36 155-188 (462)
7 PRK13488 chemoreceptor glutami 42.5 43 0.00092 25.7 3.9 37 17-57 109-151 (157)
8 PRK09406 gabD1 succinic semial 41.8 25 0.00055 30.7 2.9 30 6-35 152-184 (457)
9 smart00700 JHBP Juvenile hormo 41.2 82 0.0018 24.5 5.5 45 11-55 12-63 (225)
10 cd07148 ALDH_RL0313 Uncharacte 41.1 26 0.00057 30.4 2.9 30 6-35 153-185 (455)
11 cd07113 ALDH_PADH_NahF Escheri 41.0 27 0.00059 30.5 3.0 30 6-35 171-203 (477)
12 TIGR02288 PaaN_2 phenylacetic 40.3 21 0.00046 32.5 2.3 31 6-36 222-259 (551)
13 TIGR02299 HpaE 5-carboxymethyl 40.2 25 0.00054 30.8 2.6 30 6-35 164-196 (488)
14 cd07091 ALDH_F1-2_Ald2-like AL 39.4 30 0.00065 30.2 3.0 30 6-35 170-202 (476)
15 cd07131 ALDH_AldH-CAJ73105 Unc 39.3 30 0.00065 30.2 3.0 30 6-35 164-196 (478)
16 cd07147 ALDH_F21_RNP123 Aldehy 39.0 31 0.00068 29.7 3.0 30 6-35 152-184 (452)
17 cd07101 ALDH_SSADH2_GabD2 Myco 38.5 32 0.00069 29.8 3.0 30 6-35 147-179 (454)
18 cd07090 ALDH_F9_TMBADH NAD+-de 38.4 28 0.00061 30.2 2.6 30 6-35 145-177 (457)
19 PRK12442 translation initiatio 38.3 1E+02 0.0022 21.8 4.9 53 48-119 19-71 (87)
20 cd07138 ALDH_CddD_SSP0762 Rhod 37.9 33 0.00071 29.9 3.0 30 6-35 159-191 (466)
21 PRK10090 aldehyde dehydrogenas 37.5 34 0.00074 29.6 3.0 30 6-35 100-132 (409)
22 cd02410 archeal_CPSF_KH The ar 37.2 55 0.0012 25.2 3.8 37 18-60 52-89 (145)
23 cd07119 ALDH_BADH-GbsA Bacillu 37.0 34 0.00074 29.9 3.0 30 6-35 163-195 (482)
24 cd07118 ALDH_SNDH Gluconobacte 36.9 35 0.00075 29.7 3.0 30 6-35 148-180 (454)
25 PRK13497 chemoreceptor glutami 36.1 70 0.0015 25.3 4.4 36 18-57 115-156 (184)
26 TIGR03216 OH_muco_semi_DH 2-hy 35.8 37 0.00081 29.8 3.0 31 6-36 168-201 (481)
27 cd07144 ALDH_ALD2-YMR170C Sacc 35.7 36 0.00078 29.8 2.9 31 6-36 173-206 (484)
28 cd07109 ALDH_AAS00426 Uncharac 35.5 38 0.00083 29.3 3.0 30 6-35 146-178 (454)
29 cd07150 ALDH_VaniDH_like Pseud 35.2 37 0.0008 29.2 2.9 30 6-35 148-180 (451)
30 cd07115 ALDH_HMSADH_HapE Pseud 34.9 35 0.00076 29.5 2.7 30 6-35 146-178 (453)
31 cd07102 ALDH_EDX86601 Uncharac 34.8 40 0.00086 29.1 3.0 30 6-35 145-177 (452)
32 PF02402 Lysis_col: Lysis prot 34.7 19 0.0004 22.6 0.7 26 69-94 20-46 (46)
33 PRK09407 gabD2 succinic semial 34.6 39 0.00084 30.2 3.0 30 6-35 183-215 (524)
34 cd07127 ALDH_PAD-PaaZ Phenylac 34.6 34 0.00075 31.1 2.7 31 6-36 222-259 (549)
35 cd07111 ALDH_F16 Aldehyde dehy 34.4 39 0.00084 29.9 2.9 30 6-35 176-208 (480)
36 PF08300 HCV_NS5a_1a: Hepatiti 34.4 37 0.00081 22.6 2.1 17 73-90 27-43 (62)
37 cd07104 ALDH_BenzADH-like ALDH 34.2 40 0.00087 28.7 2.9 30 6-35 127-160 (431)
38 cd07088 ALDH_LactADH-AldA Esch 34.1 41 0.00089 29.2 3.0 30 6-35 162-194 (468)
39 PRK13493 chemoreceptor glutami 34.1 78 0.0017 25.6 4.4 36 18-57 142-183 (213)
40 cd07098 ALDH_F15-22 Aldehyde d 33.9 40 0.00087 29.3 2.9 30 6-35 149-185 (465)
41 cd03694 GTPBP_II Domain II of 33.5 1E+02 0.0022 20.6 4.3 35 73-109 15-55 (87)
42 cd07097 ALDH_KGSADH-YcbD Bacil 33.4 42 0.00092 29.3 3.0 30 6-35 164-196 (473)
43 PRK13498 chemoreceptor glutami 33.3 85 0.0019 24.3 4.4 36 18-57 118-159 (167)
44 TIGR03240 arg_catab_astD succi 33.1 40 0.00087 29.6 2.8 30 6-35 161-193 (484)
45 cd07141 ALDH_F1AB_F2_RALDH1 NA 33.1 42 0.00092 29.4 2.9 30 6-35 174-206 (481)
46 PRK00197 proA gamma-glutamyl p 32.9 35 0.00075 29.6 2.3 31 6-36 142-179 (417)
47 cd03865 M14_CPE_H Peptidase M1 32.8 25 0.00054 31.0 1.4 64 28-96 260-348 (402)
48 cd07105 ALDH_SaliADH Salicylal 32.3 47 0.001 28.6 3.1 30 6-35 127-159 (432)
49 PRK13490 chemoreceptor glutami 32.1 86 0.0019 24.1 4.2 36 18-57 115-156 (162)
50 cd07143 ALDH_AldA_AN0554 Asper 31.9 45 0.00098 29.4 2.9 31 6-36 173-206 (481)
51 PLN02766 coniferyl-aldehyde de 31.8 46 0.001 29.5 3.0 31 6-36 187-220 (501)
52 cd07083 ALDH_P5CDH ALDH subfam 31.8 48 0.001 29.3 3.1 30 6-35 183-215 (500)
53 cd07151 ALDH_HBenzADH NADP+-de 31.4 47 0.001 28.9 3.0 31 6-36 159-193 (465)
54 PRK13495 chemoreceptor glutami 31.3 91 0.002 24.0 4.2 36 18-57 108-149 (159)
55 cd07140 ALDH_F1L_FTFDH 10-form 31.2 47 0.001 29.4 2.9 31 6-36 176-209 (486)
56 cd07093 ALDH_F8_HMSADH Human a 31.0 49 0.0011 28.5 3.0 31 6-36 146-179 (455)
57 cd07100 ALDH_SSADH1_GabD1 Myco 31.0 51 0.0011 28.4 3.0 30 6-35 125-157 (429)
58 cd07142 ALDH_F2BC Arabidosis a 30.9 48 0.001 29.0 2.9 31 6-36 170-203 (476)
59 PLN02466 aldehyde dehydrogenas 30.9 46 0.00099 30.0 2.8 31 6-36 224-257 (538)
60 cd07112 ALDH_GABALDH-PuuC Esch 30.4 47 0.001 29.0 2.8 31 6-36 153-186 (462)
61 PLN02467 betaine aldehyde dehy 30.2 49 0.0011 29.4 2.9 31 6-36 180-213 (503)
62 TIGR01780 SSADH succinate-semi 30.0 51 0.0011 28.6 2.9 30 6-35 146-178 (448)
63 cd07145 ALDH_LactADH_F420-Bios 29.8 53 0.0011 28.4 3.0 30 6-35 152-184 (456)
64 cd01420 MoaC_PE MoaC family, p 29.5 2.2E+02 0.0047 21.7 5.9 76 10-99 16-113 (140)
65 PRK13252 betaine aldehyde dehy 29.4 51 0.0011 28.9 2.8 30 6-35 171-203 (488)
66 PF09383 NIL: NIL domain; Int 29.1 15 0.00032 24.0 -0.5 47 9-57 8-54 (76)
67 TIGR01722 MMSDH methylmalonic 29.1 53 0.0011 28.8 2.8 31 6-36 165-198 (477)
68 cd07152 ALDH_BenzADH NAD-depen 29.0 53 0.0012 28.3 2.9 31 6-36 139-173 (443)
69 PRK09847 gamma-glutamyl-gamma- 29.0 55 0.0012 29.0 3.0 30 6-35 186-218 (494)
70 TIGR01804 BADH glycine betaine 28.8 54 0.0012 28.5 2.8 30 6-35 162-194 (467)
71 PRK13491 chemoreceptor glutami 28.7 1.1E+02 0.0024 24.6 4.4 35 18-56 118-158 (199)
72 TIGR01236 D1pyr5carbox1 delta- 28.4 57 0.0012 29.3 3.0 30 6-35 198-230 (533)
73 cd04911 ACT_AKiii-YclM-BS_1 AC 28.4 63 0.0014 22.0 2.6 31 18-49 19-49 (76)
74 cd07139 ALDH_AldA-Rv0768 Mycob 28.2 59 0.0013 28.3 3.0 30 6-35 166-198 (471)
75 cd00528 MoaC MoaC family. Memb 28.2 2.3E+02 0.005 21.5 5.8 23 10-32 16-38 (136)
76 cd07146 ALDH_PhpJ Streptomyces 28.0 61 0.0013 28.2 3.0 30 6-35 149-181 (451)
77 TIGR03250 PhnAcAld_DH putative 27.9 60 0.0013 28.5 3.0 31 6-36 168-201 (472)
78 cd07125 ALDH_PutA-P5CDH Delta( 27.9 59 0.0013 28.9 3.0 30 6-35 196-228 (518)
79 cd07085 ALDH_F6_MMSDH Methylma 27.8 60 0.0013 28.4 3.0 31 6-36 165-198 (478)
80 PRK03137 1-pyrroline-5-carboxy 27.6 59 0.0013 28.9 2.9 30 6-35 200-232 (514)
81 cd07149 ALDH_y4uC Uncharacteri 27.6 62 0.0014 27.8 3.0 31 6-36 152-185 (453)
82 cd07095 ALDH_SGSD_AstD N-succi 27.5 49 0.0011 28.6 2.4 54 6-64 126-182 (431)
83 COG2221 DsrA Dissimilatory sul 27.4 52 0.0011 28.4 2.4 32 3-34 66-97 (317)
84 cd07103 ALDH_F5_SSADH_GabD Mit 27.3 60 0.0013 27.9 2.9 30 6-35 146-178 (451)
85 PLN02315 aldehyde dehydrogenas 27.3 60 0.0013 29.0 2.9 30 6-35 183-219 (508)
86 smart00540 LEM in nuclear memb 27.1 55 0.0012 20.2 1.9 15 18-32 9-23 (44)
87 cd07123 ALDH_F4-17_P5CDH Delta 27.1 63 0.0014 28.8 3.0 31 6-36 198-231 (522)
88 PRK11241 gabD succinate-semial 27.0 63 0.0014 28.6 3.0 30 6-35 175-207 (482)
89 PRK13494 chemoreceptor glutami 26.7 1.4E+02 0.0031 23.1 4.6 36 18-57 117-158 (163)
90 PLN02278 succinic semialdehyde 25.1 71 0.0015 28.3 3.0 30 6-35 189-221 (498)
91 cd07114 ALDH_DhaS Uncharacteri 25.1 72 0.0016 27.6 2.9 30 6-35 148-180 (457)
92 cd01215 Dab Disabled (Dab) Pho 25.0 1.9E+02 0.0041 22.0 4.9 31 89-119 48-78 (139)
93 TIGR02518 EutH_ACDH acetaldehy 24.8 70 0.0015 28.5 2.9 30 6-35 133-169 (488)
94 PF10979 DUF2786: Protein of u 24.7 44 0.00096 20.3 1.1 17 14-30 25-41 (43)
95 cd07089 ALDH_CddD-AldA-like Rh 24.4 77 0.0017 27.6 3.0 30 6-35 152-184 (459)
96 TIGR00581 moaC molybdenum cofa 24.4 36 0.00079 26.2 0.9 76 10-99 27-122 (147)
97 cd07130 ALDH_F7_AASADH NAD+-de 24.0 77 0.0017 27.8 3.0 30 6-35 161-197 (474)
98 cd03700 eEF2_snRNP_like_II EF2 23.9 2.3E+02 0.005 18.9 6.0 52 67-118 15-79 (93)
99 PRK13487 chemoreceptor glutami 23.9 1.5E+02 0.0033 23.7 4.4 36 18-57 130-171 (201)
100 PF06240 COXG: Carbon monoxide 23.7 1.2E+02 0.0026 21.8 3.5 37 16-56 8-44 (140)
101 KOG2455 Delta-1-pyrroline-5-ca 23.6 48 0.001 30.3 1.6 24 11-34 230-256 (561)
102 TIGR01237 D1pyr5carbox2 delta- 23.6 78 0.0017 28.1 2.9 55 6-64 196-253 (511)
103 cd01256 PH_dynamin Dynamin ple 23.1 45 0.00097 24.5 1.1 20 29-50 41-60 (110)
104 TIGR03807 RR_fam_repeat putati 22.7 82 0.0018 17.6 1.9 17 66-82 8-24 (27)
105 cd07094 ALDH_F21_LactADH-like 22.3 91 0.002 26.9 3.0 30 6-35 152-184 (453)
106 PF06124 DUF960: Staphylococca 22.1 2.2E+02 0.0047 20.0 4.5 28 29-56 27-54 (94)
107 cd07086 ALDH_F7_AASADH-like NA 22.0 89 0.0019 27.4 2.9 30 6-35 162-198 (478)
108 cd07092 ALDH_ABALDH-YdcW Esche 21.8 89 0.0019 26.9 2.9 29 6-35 147-178 (450)
109 PF05963 Cytomega_US3: Cytomeg 21.5 1.6E+02 0.0034 23.7 3.9 60 27-92 15-75 (187)
110 cd03864 M14_CPN Peptidase M14 21.4 31 0.00067 30.1 -0.0 65 29-96 251-338 (392)
111 PLN02419 methylmalonate-semial 21.4 84 0.0018 29.1 2.7 30 6-35 278-310 (604)
112 cd07124 ALDH_PutA-P5CDH-RocA D 20.8 96 0.0021 27.5 2.9 30 6-35 195-227 (512)
113 PRK13489 chemoreceptor glutami 20.8 1.7E+02 0.0037 24.1 4.2 36 18-57 128-169 (233)
114 cd07121 ALDH_EutE Ethanolamine 20.7 96 0.0021 27.1 2.9 30 6-35 126-162 (429)
115 PRK09364 moaC molybdenum cofac 20.5 3.8E+02 0.0083 20.8 5.9 21 12-32 32-52 (159)
116 PLN00412 NADP-dependent glycer 20.3 97 0.0021 27.5 2.9 30 6-35 187-219 (496)
117 COG2706 3-carboxymuconate cycl 20.0 2.7E+02 0.0059 24.3 5.4 46 36-81 63-114 (346)
No 1
>PF04398 DUF538: Protein of unknown function, DUF538; InterPro: IPR007493 This family consists of several plant proteins of unknown function.; PDB: 1YDU_A.
Probab=100.00 E-value=2.6e-47 Score=277.61 Aligned_cols=110 Identities=55% Similarity=0.947 Sum_probs=82.7
Q ss_pred hHHHHHHhCCCCCCCcCcCCceEEEEEccCCeEEEEeCCeEEEEEeecCEEEEEeeEEEEEEecCceeeccceEEEEEEe
Q 032674 19 VASSLLEEFGLPLGLLPLADVIEVGFVQTTGYMWILQKKKVEHSFKMVKKLVSYDTEITGYVNKNVIKKLKGVKAKELML 98 (136)
Q Consensus 19 ta~elL~~~glP~GLLP~~~V~~y~l~~~tG~f~v~l~~~c~~~f~~~~~~v~Y~~~ItG~i~~g~i~~L~GVk~K~lf~ 98 (136)
||||||++||||+||||+ +|++|+||++||+|||+|+++|+|+|+ +|+|+|+++|||+|++|+|++|+|||+|+||+
T Consensus 1 tayelL~~~glP~GLLP~-~v~~y~l~~~tG~f~v~l~~~C~~~~~--~~~v~Y~~~ItG~i~~g~i~~L~GVk~k~l~~ 77 (110)
T PF04398_consen 1 TAYELLEEYGLPRGLLPL-GVTEYGLNRDTGFFWVKLKSPCEFRFE--GYLVSYDSEITGYIEKGKIKNLTGVKVKELFL 77 (110)
T ss_dssp --HHHHHHHS-TT-TTTS-SS-EEEE-TTT-SEEEE-SS-EEEEST--TSEEEE-SEEEEEE-SS-EEEEES-EEE-SSS
T ss_pred CHHHhHHHcCCCCCcCCC-CceEEEEecCCcEEEEEecCCEEEEEE--EEEEEEcCeEEEEECCCcCccccCEEEEEEEE
Confidence 799999999999999995 789999999999999999999999997 48999999999999999999999999999999
Q ss_pred ecceeEEEEcCCCCCeEEEEecceEeeeeeccccccC
Q 032674 99 WPPVSEIKVDDPPTGKIHFKSLAGITKTFPIEAFAAG 135 (136)
Q Consensus 99 W~~I~eI~vd~~~~~~I~F~~~g~~sksFP~~~F~~~ 135 (136)
|++|++|.|++ ++|+|++ |+++++||+++|++.
T Consensus 78 W~~v~~i~~~~---~~i~F~~-g~~s~sfp~~~F~~s 110 (110)
T PF04398_consen 78 WVPVTEISVDG---DKIYFKV-GGISKSFPVSAFEES 110 (110)
T ss_dssp EES---BEE-S---SSEE-TT-SSSS----TTTTSS-
T ss_pred EeeEEEEEEcC---CEEEEEE-eeEeccCCHHHhccC
Confidence 99999999976 9999997 999999999999873
No 2
>cd03697 EFTU_II EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the catalytic or G-domain. The G-domain is composed of about 200 amino acid residues, arranged into a predominantly parallel six-stranded beta-sheet core surrounded by seven a-helices. Non-catalytic domains II and III are beta-barrels of seven and six, respectively, antiparallel beta-strands that share an extended interface. Either non-catalytic domain is composed of about 100 amino acid residues. EF-Tu proteins exist in two principal conformations: in a compact one, EF-Tu*GTP, with tight interfaces between all three domains and a high affinity for aminoacyl-tRNA, and in an open one, EF-Tu*GDP, with essentially no G-domain-domain II interactions and a low affinity for aminoacyl-tRNA. EF-Tu has approximately a 100-fold higher
Probab=49.76 E-value=41 Score=22.52 Aligned_cols=35 Identities=26% Similarity=0.337 Sum_probs=25.2
Q ss_pred eeEEEEEEecCceeeccceEEEEE----EeecceeEEEEcC
Q 032674 73 DTEITGYVNKNVIKKLKGVKAKEL----MLWPPVSEIKVDD 109 (136)
Q Consensus 73 ~~~ItG~i~~g~i~~L~GVk~K~l----f~W~~I~eI~vd~ 109 (136)
.+.++|+|+.|+|+ .|-++..+ .....|..|.+.+
T Consensus 15 G~vv~G~v~~G~v~--~gd~v~~~p~~~~~~~~V~si~~~~ 53 (87)
T cd03697 15 GTVVTGRIERGTIK--VGDEVEIVGFGETLKTTVTGIEMFR 53 (87)
T ss_pred EEEEEEEECCCCCc--cCCEEEEeCCCCCceEEEEEEEECC
Confidence 35799999999998 45555444 4567788888765
No 3
>PF03975 CheD: CheD chemotactic sensory transduction; InterPro: IPR005659 CheD deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs). CheD-mediated MCP deamidation is required for productive communication of the conformational signals of the chemoreceptors to the cheA kinase []. CheC is a CheY-P phosphatase (CheY controls flagellar rotation and is activated by phosphorylation). The activity of CheC is enhanced by its interaction with CheD, forming a CheC-CheD heterodimer. It is suggested that CheC exerts its effect on MCP methylation in Bacillus subtilis by controlling the binding of CheD to the MCPs [].; GO: 0050568 protein-glutamine glutaminase activity, 0006935 chemotaxis; PDB: 2F9Z_D.
Probab=47.48 E-value=29 Score=24.83 Aligned_cols=36 Identities=33% Similarity=0.574 Sum_probs=23.3
Q ss_pred hhHHHHHHhCCCCC------CCcCcCCceEEEEEccCCeEEEEeCC
Q 032674 18 KVASSLLEEFGLPL------GLLPLADVIEVGFVQTTGYMWILQKK 57 (136)
Q Consensus 18 ~ta~elL~~~glP~------GLLP~~~V~~y~l~~~tG~f~v~l~~ 57 (136)
..|.++|+++|+|. |-.+. .| .++..||.+||+.-.
T Consensus 67 ~~a~~~L~~~gi~I~a~dvGG~~~R-~v---~f~~~tG~v~vk~~~ 108 (114)
T PF03975_consen 67 EAARELLAEEGIPIVAEDVGGNFGR-KV---RFDPATGEVWVKRIG 108 (114)
T ss_dssp HHHHHHHHHTT--EEEEEE-SSS-E-EE---EEETTTTEEEEE---
T ss_pred HHHHHHHHHCCCcEEEeeCCCCCCc-EE---EEEcCCCEEEEEECC
Confidence 46889999999994 55552 23 478899999998654
No 4
>cd07110 ALDH_F10_BADH Arabidopsis betaine aldehyde dehydrogenase 1 and 2, ALDH family 10A8 and 10A9-like. Present in this CD are the Arabidopsis betaine aldehyde dehydrogenase (BADH) 1 (chloroplast) and 2 (mitochondria), also known as, aldehyde dehydrogenase family 10 member A8 and aldehyde dehydrogenase family 10 member A9, respectively, and are putative dehydration- and salt-inducible BADHs (EC 1.2.1.8) that catalyze the oxidation of betaine aldehyde to the compatible solute glycine betaine.
Probab=46.00 E-value=21 Score=30.97 Aligned_cols=30 Identities=33% Similarity=0.344 Sum_probs=24.2
Q ss_pred ccEEEeccccchhhH---HHHHHhCCCCCCCcC
Q 032674 6 GGVVKKGHEEGMKVA---SSLLEEFGLPLGLLP 35 (136)
Q Consensus 6 ~ae~~~g~~~~~~ta---~elL~~~glP~GLLP 35 (136)
++.|++.++.+..++ .++|++.|||.|++-
T Consensus 149 N~VV~Kps~~~p~~~~~l~~~~~~aGlP~gvv~ 181 (456)
T cd07110 149 CTVVLKPSELTSLTELELAEIAAEAGLPPGVLN 181 (456)
T ss_pred CEEEEECcccchHHHHHHHHHHHHcCCCCCcEE
Confidence 467888888776665 488999999999876
No 5
>PRK09457 astD succinylglutamic semialdehyde dehydrogenase; Reviewed
Probab=45.50 E-value=19 Score=31.65 Aligned_cols=30 Identities=40% Similarity=0.412 Sum_probs=25.3
Q ss_pred ccEEEeccccchhhHH---HHHHhCCCCCCCcC
Q 032674 6 GGVVKKGHEEGMKVAS---SLLEEFGLPLGLLP 35 (136)
Q Consensus 6 ~ae~~~g~~~~~~ta~---elL~~~glP~GLLP 35 (136)
++.|.+.++.+..++. ++|++.|||.|++=
T Consensus 163 N~VvlKPs~~tp~t~~~l~~l~~~aGlP~gvv~ 195 (487)
T PRK09457 163 NTVVFKPSELTPWVAELTVKLWQQAGLPAGVLN 195 (487)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHhCcCcCeEE
Confidence 5678899988877766 88999999999886
No 6
>PRK13968 putative succinate semialdehyde dehydrogenase; Provisional
Probab=42.53 E-value=25 Score=30.79 Aligned_cols=31 Identities=23% Similarity=0.404 Sum_probs=24.6
Q ss_pred ccEEEeccccchhhH---HHHHHhCCCCCCCcCc
Q 032674 6 GGVVKKGHEEGMKVA---SSLLEEFGLPLGLLPL 36 (136)
Q Consensus 6 ~ae~~~g~~~~~~ta---~elL~~~glP~GLLP~ 36 (136)
++.|++.++.+..++ .++|++.|||.|++-+
T Consensus 155 N~vv~KPs~~tp~~~~~l~~~~~~aGlP~gv~~~ 188 (462)
T PRK13968 155 NGYLLKHAPNVMGCAQLIAQVFKDAGIPQGVYGW 188 (462)
T ss_pred CEEEEECCCcChHHHHHHHHHHHHcCcCcCcEEE
Confidence 467888888776654 4889999999999763
No 7
>PRK13488 chemoreceptor glutamine deamidase CheD; Provisional
Probab=42.46 E-value=43 Score=25.70 Aligned_cols=37 Identities=22% Similarity=0.350 Sum_probs=27.9
Q ss_pred hhhHHHHHHhCCCCC------CCcCcCCceEEEEEccCCeEEEEeCC
Q 032674 17 MKVASSLLEEFGLPL------GLLPLADVIEVGFVQTTGYMWILQKK 57 (136)
Q Consensus 17 ~~ta~elL~~~glP~------GLLP~~~V~~y~l~~~tG~f~v~l~~ 57 (136)
.+.|.++|+++|+|. |--+ ..| .|+.+||.+|++...
T Consensus 109 i~~a~~~L~~~gi~i~a~dvGG~~g-R~i---~f~~~tG~v~vk~~~ 151 (157)
T PRK13488 109 IESAKETLKKLGIRIVAEDVGGDYG-RTV---KFDLKTGKVIVRKAN 151 (157)
T ss_pred HHHHHHHHHHCCCcEEEEEcCCCCC-cEE---EEECCCCEEEEEEcC
Confidence 357889999999995 5555 234 478899999998654
No 8
>PRK09406 gabD1 succinic semialdehyde dehydrogenase; Reviewed
Probab=41.77 E-value=25 Score=30.71 Aligned_cols=30 Identities=20% Similarity=0.213 Sum_probs=24.1
Q ss_pred ccEEEeccccchhhH---HHHHHhCCCCCCCcC
Q 032674 6 GGVVKKGHEEGMKVA---SSLLEEFGLPLGLLP 35 (136)
Q Consensus 6 ~ae~~~g~~~~~~ta---~elL~~~glP~GLLP 35 (136)
++.|++..+.+..++ .++|++.|||.|++-
T Consensus 152 N~VV~Kps~~~p~~~~~l~~l~~~aGlP~gvv~ 184 (457)
T PRK09406 152 NVGLLKHASNVPQTALYLADLFRRAGFPDGCFQ 184 (457)
T ss_pred CEEEEECCCcCcHHHHHHHHHHHHhCCCcCcEE
Confidence 467888888766665 488999999999976
No 9
>smart00700 JHBP Juvenile hormone binding protein domains in insects. The juvenile hormone exerts pleiotropic functions during insect life cycles and its binding proteins regulate these functions.
Probab=41.16 E-value=82 Score=24.54 Aligned_cols=45 Identities=22% Similarity=0.363 Sum_probs=24.3
Q ss_pred ecc-ccchhhHHHHHHh---CCCC-CCCcCcC--CceEEEEEccCCeEEEEe
Q 032674 11 KGH-EEGMKVASSLLEE---FGLP-LGLLPLA--DVIEVGFVQTTGYMWILQ 55 (136)
Q Consensus 11 ~g~-~~~~~ta~elL~~---~glP-~GLLP~~--~V~~y~l~~~tG~f~v~l 55 (136)
.++ +.|...+.+-+.. .|.| .|+-|++ .+....++..+|.+++++
T Consensus 12 ~~dp~~Ci~~~~~~~~~~~~~G~Pe~gip~ldPl~i~~~~i~~~~~~~~~~~ 63 (225)
T smart00700 12 LGDPSECLRDAIEALLPQLKNGIPEYGIPPLDPLEIDDLKISIGSGVIGLRL 63 (225)
T ss_pred CCChhHHHHHHHHHHHHHHhcCCCccCCCCcCCEEeeeEEEecCCCceEEEE
Confidence 455 7788876655433 3555 3444433 244555555556555554
No 10
>cd07148 ALDH_RL0313 Uncharacterized ALDH ( RL0313) with similarity to Tortula ruralis aldehyde dehydrogenase ALDH21A1. Uncharacterized aldehyde dehydrogenase (locus RL0313) with sequence similarity to the moss Tortula ruralis aldehyde dehydrogenase ALDH21A1 (RNP123) believed to play an important role in the detoxification of aldehydes generated in response to desiccation- and salinity-stress, and similar sequences are included in this CD.
Probab=41.07 E-value=26 Score=30.45 Aligned_cols=30 Identities=30% Similarity=0.233 Sum_probs=24.2
Q ss_pred ccEEEeccccchhhHH---HHHHhCCCCCCCcC
Q 032674 6 GGVVKKGHEEGMKVAS---SLLEEFGLPLGLLP 35 (136)
Q Consensus 6 ~ae~~~g~~~~~~ta~---elL~~~glP~GLLP 35 (136)
++.|.++++.+..++. ++|++.|||.|++=
T Consensus 153 N~VvlKps~~~p~~~~~l~~~~~~aGlP~gvv~ 185 (455)
T cd07148 153 CPVIVKPALATPLSCLAFVDLLHEAGLPEGWCQ 185 (455)
T ss_pred CEEEeeCCCcccHHHHHHHHHHHHcCCCcCcEE
Confidence 4678888887766544 88999999999876
No 11
>cd07113 ALDH_PADH_NahF Escherichia coli NAD+-dependent phenylacetaldehyde dehydrogenase PadA-like. NAD+-dependent, homodimeric, phenylacetaldehyde dehydrogenase (PADH, EC=1.2.1.39) PadA of Escherichia coli involved in the catabolism of 2-phenylethylamine, and other related sequences, are present in this CD. Also included is the Pseudomonas fluorescens ST StyD PADH involved in styrene catabolism, the Sphingomonas sp. LB126 FldD protein involved in fluorene degradation, and the Novosphingobium aromaticivorans NahF salicylaldehyde dehydrogenase involved in the NAD+-dependent conversion of salicylaldehyde to salicylate.
Probab=41.02 E-value=27 Score=30.54 Aligned_cols=30 Identities=30% Similarity=0.298 Sum_probs=23.9
Q ss_pred ccEEEeccccchhhH---HHHHHhCCCCCCCcC
Q 032674 6 GGVVKKGHEEGMKVA---SSLLEEFGLPLGLLP 35 (136)
Q Consensus 6 ~ae~~~g~~~~~~ta---~elL~~~glP~GLLP 35 (136)
++.|.+.++.+..++ .++|++.|||.|++=
T Consensus 171 N~VvlKPs~~tp~~~~~l~~~~~~aglP~gvv~ 203 (477)
T cd07113 171 CTIVIKPSEFTPLTLLRVAELAKEAGIPDGVLN 203 (477)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHcCcCCCcEE
Confidence 467888888776665 588999999999875
No 12
>TIGR02288 PaaN_2 phenylacetic acid degradation protein paaN. This family includes sequences from Burkholderia, Bordetella, Streptomyces. Other PaaN enzymes are represented by a separate model, TIGR02278.
Probab=40.29 E-value=21 Score=32.52 Aligned_cols=31 Identities=26% Similarity=0.324 Sum_probs=24.6
Q ss_pred ccEEEeccccchhhHH-------HHHHhCCCCCCCcCc
Q 032674 6 GGVVKKGHEEGMKVAS-------SLLEEFGLPLGLLPL 36 (136)
Q Consensus 6 ~ae~~~g~~~~~~ta~-------elL~~~glP~GLLP~ 36 (136)
++.|.+.++.+.-+++ ++|++.|||.|++-+
T Consensus 222 N~VVlKPs~~tpl~~~~~~~~l~e~l~eAGlP~gvv~l 259 (551)
T TIGR02288 222 NPVLVKPHPGAILPLALTVQVAREVLGEAGFDPNLVTL 259 (551)
T ss_pred CeEEEECCcccchhHHHHHHHHHHHHHHcCcChhHEEE
Confidence 5678888888765433 999999999998863
No 13
>TIGR02299 HpaE 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase. This model represents the dehydrogenase responsible for the conversion of 5-carboxymethyl-2-hydroxymuconate semialdehyde to 5-carboxymethyl-2-hydroxymuconate (a tricarboxylic acid). This is the step in the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate following the oxidative opening of the aromatic ring.
Probab=40.16 E-value=25 Score=30.83 Aligned_cols=30 Identities=33% Similarity=0.351 Sum_probs=24.0
Q ss_pred ccEEEeccccchhhH---HHHHHhCCCCCCCcC
Q 032674 6 GGVVKKGHEEGMKVA---SSLLEEFGLPLGLLP 35 (136)
Q Consensus 6 ~ae~~~g~~~~~~ta---~elL~~~glP~GLLP 35 (136)
++.|.++++.+..++ .++|++.|||.|++=
T Consensus 164 N~VIlKps~~~p~~~~~l~~~~~~aGlP~gvv~ 196 (488)
T TIGR02299 164 NTVVLKPAEWSPLTAARLAEIAKEAGLPDGVFN 196 (488)
T ss_pred CEEEEECchhchHHHHHHHHHHHHcCcChhhee
Confidence 467888888776554 589999999999875
No 14
>cd07091 ALDH_F1-2_Ald2-like ALDH subfamily: ALDH families 1and 2, including 10-formyltetrahydrofolate dehydrogenase, NAD+-dependent retinal dehydrogenase 1 and related proteins. ALDH subfamily which includes the NAD+-dependent retinal dehydrogenase 1 (RALDH 1, ALDH1, EC=1.2.1.36), also known as aldehyde dehydrogenase family 1 member A1 (ALDH1A1), in humans, a homotetrameric, cytosolic enzyme that catalyzes the oxidation of retinaldehyde to retinoic acid. Human ALDH1B1 and ALDH2 are also in this cluster; both are mitochrondrial homotetramers which play important roles in acetaldehyde oxidation; ALDH1B1 in response to UV light exposure and ALDH2 during ethanol metabolism. 10-formyltetrahydrofolate dehydrogenase (FTHFDH, EC=1.5.1.6), also known as aldehyde dehydrogenase family 1 member L1 (ALDH1L1), in humans, a multi-domain homotetramer with an N-terminal formyl transferase domain and a C-terminal ALDH domain. FTHFDH catalyzes an NADP+-dependent dehydrogenase reaction resulting in the co
Probab=39.36 E-value=30 Score=30.18 Aligned_cols=30 Identities=30% Similarity=0.402 Sum_probs=23.4
Q ss_pred ccEEEeccccchhh---HHHHHHhCCCCCCCcC
Q 032674 6 GGVVKKGHEEGMKV---ASSLLEEFGLPLGLLP 35 (136)
Q Consensus 6 ~ae~~~g~~~~~~t---a~elL~~~glP~GLLP 35 (136)
++.|++.++.+..+ ..++|.+.|||.|++=
T Consensus 170 N~VvlKps~~~p~~~~~l~~~~~~aglP~g~~~ 202 (476)
T cd07091 170 NTVVLKPAEQTPLSALYLAELIKEAGFPPGVVN 202 (476)
T ss_pred CEEEEeCCCCChHHHHHHHHHHHHcCcCCCcEE
Confidence 46688888876554 4489999999999875
No 15
>cd07131 ALDH_AldH-CAJ73105 Uncharacterized Candidatus kuenenia aldehyde dehydrogenase AldH (CAJ73105)-like. Uncharacterized aldehyde dehydrogenase of Candidatus kuenenia AldH (locus CAJ73105) and similar sequences with similarity to alpha-aminoadipic semialdehyde dehydrogenase (AASADH, human ALDH7A1, EC=1.2.1.31), Arabidopsis ALDH7B4, and Streptomyces clavuligerus delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH) are included in this CD.
Probab=39.31 E-value=30 Score=30.17 Aligned_cols=30 Identities=37% Similarity=0.447 Sum_probs=23.6
Q ss_pred ccEEEeccccchhhH---HHHHHhCCCCCCCcC
Q 032674 6 GGVVKKGHEEGMKVA---SSLLEEFGLPLGLLP 35 (136)
Q Consensus 6 ~ae~~~g~~~~~~ta---~elL~~~glP~GLLP 35 (136)
++.|+++++.+..++ .++|.+.|||.|++=
T Consensus 164 N~VvlKps~~~p~~~~~l~~~l~~aGlP~gvv~ 196 (478)
T cd07131 164 NTVVFKPAEDTPACALKLVELFAEAGLPPGVVN 196 (478)
T ss_pred CEEEEECCCcCcHHHHHHHHHHHhcCcCCCcEE
Confidence 457888888765554 489999999999885
No 16
>cd07147 ALDH_F21_RNP123 Aldehyde dehydrogenase family 21A1-like. Aldehyde dehydrogenase ALDH21A1 (gene name RNP123) was first described in the moss Tortula ruralis and is believed to play an important role in the detoxification of aldehydes generated in response to desiccation- and salinity-stress, and ALDH21A1 expression represents a unique stress tolerance mechanism. So far, of plants, only the bryophyte sequence has been observed, but similar protein sequences from bacteria and archaea are also present in this CD.
Probab=38.96 E-value=31 Score=29.75 Aligned_cols=30 Identities=30% Similarity=0.298 Sum_probs=24.5
Q ss_pred ccEEEeccccchhhH---HHHHHhCCCCCCCcC
Q 032674 6 GGVVKKGHEEGMKVA---SSLLEEFGLPLGLLP 35 (136)
Q Consensus 6 ~ae~~~g~~~~~~ta---~elL~~~glP~GLLP 35 (136)
++.|++.++.+..++ .++|++.|||.|++-
T Consensus 152 N~VIlKps~~~p~~~~~l~~~l~~ag~P~g~v~ 184 (452)
T cd07147 152 CPFVLKPASRTPLSALILGEVLAETGLPKGAFS 184 (452)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHcCCCcCcEE
Confidence 377888988876664 589999999999886
No 17
>cd07101 ALDH_SSADH2_GabD2 Mycobacterium tuberculosis succinate-semialdehyde dehydrogenase 2-like. Succinate-semialdehyde dehydrogenase 2 (SSADH2) and similar proteins are in this CD. SSADH1 (GabD1, EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation of succinate semialdehyde to succinate. SSADH activity in Mycobacterium tuberculosis is encoded by both gabD1 (Rv0234c) and gabD2 (Rv1731), however ,the Vmax of GabD1 was shown to be much higher than that of GabD2, and GabD2 (SSADH2) is likely to serve physiologically as a dehydrogenase for a different aldehyde(s).
Probab=38.47 E-value=32 Score=29.83 Aligned_cols=30 Identities=37% Similarity=0.368 Sum_probs=23.5
Q ss_pred ccEEEeccccchhhH---HHHHHhCCCCCCCcC
Q 032674 6 GGVVKKGHEEGMKVA---SSLLEEFGLPLGLLP 35 (136)
Q Consensus 6 ~ae~~~g~~~~~~ta---~elL~~~glP~GLLP 35 (136)
++.|++.++.+..++ .++|.+.|||.|++=
T Consensus 147 N~vvlKps~~~p~~~~~l~~~~~~aglP~gv~~ 179 (454)
T cd07101 147 NAVVLKPDSQTALTALWAVELLIEAGLPRDLWQ 179 (454)
T ss_pred CEEEEECCccchHHHHHHHHHHHHcCcCCCcEE
Confidence 457888888776554 488999999999885
No 18
>cd07090 ALDH_F9_TMBADH NAD+-dependent 4-trimethylaminobutyraldehyde dehydrogenase, ALDH family 9A1. NAD+-dependent, 4-trimethylaminobutyraldehyde dehydrogenase (TMABADH, EC=1.2.1.47), also known as aldehyde dehydrogenase family 9 member A1 (ALDH9A1) in humans, is a cytosolic tetramer which catalyzes the oxidation of gamma-aminobutyraldehyde involved in 4-aminobutyric acid (GABA) biosynthesis and also oxidizes betaine aldehyde (gamma-trimethylaminobutyraldehyde) which is involved in carnitine biosynthesis.
Probab=38.41 E-value=28 Score=30.16 Aligned_cols=30 Identities=27% Similarity=0.301 Sum_probs=23.2
Q ss_pred ccEEEeccccchhh---HHHHHHhCCCCCCCcC
Q 032674 6 GGVVKKGHEEGMKV---ASSLLEEFGLPLGLLP 35 (136)
Q Consensus 6 ~ae~~~g~~~~~~t---a~elL~~~glP~GLLP 35 (136)
++.|+++++.+..+ ..++|++.|||.|++=
T Consensus 145 N~Vv~Kps~~~~~~~~~l~~~~~~aGlP~g~~~ 177 (457)
T cd07090 145 NAMVYKPSPFTPLTALLLAEILTEAGLPDGVFN 177 (457)
T ss_pred CeeeecCCCcCcHHHHHHHHHHHHcCCCcccEE
Confidence 45778888776555 4599999999999874
No 19
>PRK12442 translation initiation factor IF-1; Reviewed
Probab=38.27 E-value=1e+02 Score=21.82 Aligned_cols=53 Identities=25% Similarity=0.346 Sum_probs=37.8
Q ss_pred CCeEEEEeCCeEEEEEeecCEEEEEeeEEEEEEecCceeeccceEEEEEEeecceeEEEEcCCCCCeEEEEe
Q 032674 48 TGYMWILQKKKVEHSFKMVKKLVSYDTEITGYVNKNVIKKLKGVKAKELMLWPPVSEIKVDDPPTGKIHFKS 119 (136)
Q Consensus 48 tG~f~v~l~~~c~~~f~~~~~~v~Y~~~ItG~i~~g~i~~L~GVk~K~lf~W~~I~eI~vd~~~~~~I~F~~ 119 (136)
++.|.|.|...+ .+- ..|+|++...+|+=|.|=+|++- +| + - +++.+.|.|.-
T Consensus 19 ~~~frV~LenG~---------~vl--a~isGKmR~~rIrIl~GD~V~VE-~s-p-----Y-DltkGRIiyR~ 71 (87)
T PRK12442 19 DSRFRVTLENGV---------EVG--AYASGRMRKHRIRILAGDRVTLE-LS-P-----Y-DLTKGRINFRH 71 (87)
T ss_pred CCEEEEEeCCCC---------EEE--EEeccceeeeeEEecCCCEEEEE-EC-c-----c-cCCceeEEEEe
Confidence 677888866432 222 67999999999999999999887 34 1 1 23457788764
No 20
>cd07138 ALDH_CddD_SSP0762 Rhodococcus ruber 6-oxolauric acid dehydrogenase-like. The 6-oxolauric acid dehydrogenase (CddD) from Rhodococcus ruber SC1 which converts 6-oxolauric acid to dodecanedioic acid, and the aldehyde dehydrogenase (locus SSP0762) from Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 and other similar sequences, are included in this CD.
Probab=37.91 E-value=33 Score=29.86 Aligned_cols=30 Identities=37% Similarity=0.453 Sum_probs=23.6
Q ss_pred ccEEEeccccchhhH---HHHHHhCCCCCCCcC
Q 032674 6 GGVVKKGHEEGMKVA---SSLLEEFGLPLGLLP 35 (136)
Q Consensus 6 ~ae~~~g~~~~~~ta---~elL~~~glP~GLLP 35 (136)
++.|++.++.+..++ .++|++.|||.|++-
T Consensus 159 N~Vv~Kps~~~p~~~~~l~~~~~~aGlP~g~v~ 191 (466)
T cd07138 159 CTVVLKPSEVAPLSAIILAEILDEAGLPAGVFN 191 (466)
T ss_pred CEEEEECCCcCcHHHHHHHHHHHHcCCCCCcEE
Confidence 467788888766654 489999999999876
No 21
>PRK10090 aldehyde dehydrogenase A; Provisional
Probab=37.46 E-value=34 Score=29.61 Aligned_cols=30 Identities=30% Similarity=0.456 Sum_probs=23.6
Q ss_pred ccEEEeccccchhhH---HHHHHhCCCCCCCcC
Q 032674 6 GGVVKKGHEEGMKVA---SSLLEEFGLPLGLLP 35 (136)
Q Consensus 6 ~ae~~~g~~~~~~ta---~elL~~~glP~GLLP 35 (136)
++.|.+.++.+..++ .++|++.|||.|++=
T Consensus 100 N~VvlKps~~~p~~~~~l~~~~~~aglP~gv~~ 132 (409)
T PRK10090 100 NTIVIKPSEFTPNNAIAFAKIVDEIGLPKGVFN 132 (409)
T ss_pred CEEEEECCCcChHHHHHHHHHHHHcCCCcccEE
Confidence 467788888765554 589999999999885
No 22
>cd02410 archeal_CPSF_KH The archaeal cleavage and polyadenylation specificity factor (CPSF) contains an N-terminal K homology RNA-binding domain (KH). The archeal CPSFs are predicted to be metal-dependent RNases belonging to the beta-CASP family, a subgroup enzymes within the metallo-beta-lactamase fold. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In general, KH domains are known to bind single-stranded RNA or DNA and are found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=37.15 E-value=55 Score=25.15 Aligned_cols=37 Identities=24% Similarity=0.294 Sum_probs=28.3
Q ss_pred hhHHHHHHhCCCCCCCcCc-CCceEEEEEccCCeEEEEeCCeEE
Q 032674 18 KVASSLLEEFGLPLGLLPL-ADVIEVGFVQTTGYMWILQKKKVE 60 (136)
Q Consensus 18 ~ta~elL~~~glP~GLLP~-~~V~~y~l~~~tG~f~v~l~~~c~ 60 (136)
+.|.++..+ ++|- .+|++.-+|.+||.++++..++.-
T Consensus 52 e~A~~~I~~------ivP~ea~i~di~Fd~~tGEV~IeaeKPG~ 89 (145)
T cd02410 52 EEAIKIILE------IVPEEAGITDIYFDDDTGEVIIEAEKPGL 89 (145)
T ss_pred HHHHHHHHH------hCCCccCceeeEecCCCcEEEEEEcCCeE
Confidence 456666665 4552 379999999999999999998754
No 23
>cd07119 ALDH_BADH-GbsA Bacillus subtilis NAD+-dependent betaine aldehyde dehydrogenase-like. Included in this CD is the NAD+-dependent, betaine aldehyde dehydrogenase (BADH, GbsA, EC=1.2.1.8) of Bacillus subtilis involved in the synthesis of the osmoprotectant glycine betaine from choline or glycine betaine aldehyde.
Probab=37.00 E-value=34 Score=29.91 Aligned_cols=30 Identities=37% Similarity=0.398 Sum_probs=23.5
Q ss_pred ccEEEeccccchhh---HHHHHHhCCCCCCCcC
Q 032674 6 GGVVKKGHEEGMKV---ASSLLEEFGLPLGLLP 35 (136)
Q Consensus 6 ~ae~~~g~~~~~~t---a~elL~~~glP~GLLP 35 (136)
++.|++.++.+..+ ..++|.+.|||.|++=
T Consensus 163 N~VilKps~~~p~~~~~l~~~~~~aGlP~gv~~ 195 (482)
T cd07119 163 NTVVIKPSEVTPLTTIALFELIEEAGLPAGVVN 195 (482)
T ss_pred CEEEEECCccccHHHHHHHHHHHHcCCCcCcEE
Confidence 46788888766555 4589999999999875
No 24
>cd07118 ALDH_SNDH Gluconobacter oxydans L-sorbosone dehydrogenase-like. Included in this CD is the L-sorbosone dehydrogenase (SNDH) from Gluconobacter oxydans UV10. In G. oxydans, D-sorbitol is converted to 2-keto-L-gulonate (a precursor of L-ascorbic acid) in sequential oxidation steps catalyzed by a FAD-dependent, L-sorbose dehydrogenase and an NAD(P)+-dependent, L-sorbosone dehydrogenase.
Probab=36.92 E-value=35 Score=29.70 Aligned_cols=30 Identities=37% Similarity=0.382 Sum_probs=23.6
Q ss_pred ccEEEeccccchhhH---HHHHHhCCCCCCCcC
Q 032674 6 GGVVKKGHEEGMKVA---SSLLEEFGLPLGLLP 35 (136)
Q Consensus 6 ~ae~~~g~~~~~~ta---~elL~~~glP~GLLP 35 (136)
++.|++.++.+..++ .++|++.|||.|++=
T Consensus 148 N~Vi~Kps~~~p~~~~~l~~~~~~aG~P~g~~~ 180 (454)
T cd07118 148 CTVVVKPSEFTSGTTLMLAELLIEAGLPAGVVN 180 (454)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHhcCCCccceE
Confidence 467888888766554 488999999999886
No 25
>PRK13497 chemoreceptor glutamine deamidase CheD; Provisional
Probab=36.10 E-value=70 Score=25.25 Aligned_cols=36 Identities=17% Similarity=0.246 Sum_probs=28.1
Q ss_pred hhHHHHHHhCCCCC------CCcCcCCceEEEEEccCCeEEEEeCC
Q 032674 18 KVASSLLEEFGLPL------GLLPLADVIEVGFVQTTGYMWILQKK 57 (136)
Q Consensus 18 ~ta~elL~~~glP~------GLLP~~~V~~y~l~~~tG~f~v~l~~ 57 (136)
+.|.++|+++|+|. |--+ ..|. |+.+||.+|++.=.
T Consensus 115 ~~a~~~L~~~gI~i~a~DvGG~~g-R~v~---f~~~tG~v~~k~~~ 156 (184)
T PRK13497 115 AFAMQFLRDEGIPVVGSSTGGEHG-RKLE---YWPVSGRARQYPLT 156 (184)
T ss_pred HHHHHHHHHcCCcEEEEeCCCCCC-cEEE---EECCCCeEEEEEcC
Confidence 57889999999994 6666 3344 77899999999543
No 26
>TIGR03216 OH_muco_semi_DH 2-hydroxymuconic semialdehyde dehydrogenase. Members of this protein family are 2-hydroxymuconic semialdehyde dehydrogenase. Many aromatic compounds are catabolized by way of the catechol, via the meta-cleavage pathway, to pyruvate and acetyl-CoA. This enzyme performs the second of seven steps in that pathway for catechol degradation.
Probab=35.81 E-value=37 Score=29.75 Aligned_cols=31 Identities=29% Similarity=0.433 Sum_probs=24.3
Q ss_pred ccEEEeccccchhhH---HHHHHhCCCCCCCcCc
Q 032674 6 GGVVKKGHEEGMKVA---SSLLEEFGLPLGLLPL 36 (136)
Q Consensus 6 ~ae~~~g~~~~~~ta---~elL~~~glP~GLLP~ 36 (136)
++.|+++++.+..++ .++|.+.|||.|++=+
T Consensus 168 N~vvlKPs~~tp~t~~~l~~l~~~aglP~g~~~~ 201 (481)
T TIGR03216 168 NTVVVKPSEETPGTATLLGEVMNAVGVPKGVYNV 201 (481)
T ss_pred CEEEEECCccchHHHHHHHHHHHHcCCCcCceEE
Confidence 456888888766654 5899999999998863
No 27
>cd07144 ALDH_ALD2-YMR170C Saccharomyces cerevisiae aldehyde dehydrogenase 2 (YMR170c)-like. NAD(P)+-dependent Saccharomyces cerevisiae aldehyde dehydrogenase 2 (YMR170c, ALD5, EC=1.2.1.5) and other similar sequences, are present in this CD.
Probab=35.68 E-value=36 Score=29.80 Aligned_cols=31 Identities=29% Similarity=0.396 Sum_probs=24.1
Q ss_pred ccEEEeccccchhh---HHHHHHhCCCCCCCcCc
Q 032674 6 GGVVKKGHEEGMKV---ASSLLEEFGLPLGLLPL 36 (136)
Q Consensus 6 ~ae~~~g~~~~~~t---a~elL~~~glP~GLLP~ 36 (136)
++.|++.++.+..+ ..++|++.|||.|++=+
T Consensus 173 N~VV~Kps~~~p~~~~~l~~~~~~aglP~gv~~~ 206 (484)
T cd07144 173 NTVVIKPAENTPLSLLYFANLVKEAGFPPGVVNI 206 (484)
T ss_pred CEEEEECCccchHHHHHHHHHHHHhCcCCCcEEE
Confidence 46778888876554 45899999999998863
No 28
>cd07109 ALDH_AAS00426 Uncharacterized Saccharopolyspora spinosa aldehyde dehydrogenase (AAS00426)-like. Uncharacterized aldehyde dehydrogenase of Saccharopolyspora spinosa (AAS00426) and other similar sequences, are present in this CD.
Probab=35.47 E-value=38 Score=29.28 Aligned_cols=30 Identities=40% Similarity=0.472 Sum_probs=23.6
Q ss_pred ccEEEeccccchhh---HHHHHHhCCCCCCCcC
Q 032674 6 GGVVKKGHEEGMKV---ASSLLEEFGLPLGLLP 35 (136)
Q Consensus 6 ~ae~~~g~~~~~~t---a~elL~~~glP~GLLP 35 (136)
++.|.+.++.+..+ ..++|++.|||.|++=
T Consensus 146 N~VvlKps~~~p~~~~~l~~~~~~aGlP~gv~~ 178 (454)
T cd07109 146 NAVVVKPAEDAPLTALRLAELAEEAGLPAGALN 178 (454)
T ss_pred CEEEEECCCCChHHHHHHHHHHHHcCcCccceE
Confidence 46788888876555 4589999999999986
No 29
>cd07150 ALDH_VaniDH_like Pseudomonas putida vanillin dehydrogenase-like. Vanillin dehydrogenase (Vdh, VaniDH) involved in the metabolism of ferulic acid and other related sequences are included in this CD. The E. coli vanillin dehydrogenase (LigV) preferred NAD+ to NADP+ and exhibited a broad substrate preference, including vanillin, benzaldehyde, protocatechualdehyde, m-anisaldehyde, and p-hydroxybenzaldehyde.
Probab=35.24 E-value=37 Score=29.25 Aligned_cols=30 Identities=37% Similarity=0.538 Sum_probs=23.6
Q ss_pred ccEEEeccccchhhH---HHHHHhCCCCCCCcC
Q 032674 6 GGVVKKGHEEGMKVA---SSLLEEFGLPLGLLP 35 (136)
Q Consensus 6 ~ae~~~g~~~~~~ta---~elL~~~glP~GLLP 35 (136)
++.|.+.++.+..++ .++|++.|||.|++-
T Consensus 148 N~VilKps~~~p~t~~~l~~~~~~ag~P~g~v~ 180 (451)
T cd07150 148 NTVVLKPSEETPVIGLKIAEIMEEAGLPKGVFN 180 (451)
T ss_pred CeEEEECCccCcHHHHHHHHHHHHhCCCcCcEE
Confidence 456788887776655 589999999999875
No 30
>cd07115 ALDH_HMSADH_HapE Pseudomonas fluorescens 4-hydroxymuconic semialdehyde dehydrogenase-like. 4-hydroxymuconic semialdehyde dehydrogenase (HapE, EC=1.2.1.61) of Pseudomonas fluorescens ACB involved in 4-hydroxyacetophenone degradation, and putative hydroxycaproate semialdehyde dehydrogenase (ChnE) of Brachymonas petroleovorans involved in cyclohexane metabolism, and other similar sequences, are present in this CD.
Probab=34.88 E-value=35 Score=29.50 Aligned_cols=30 Identities=33% Similarity=0.380 Sum_probs=23.6
Q ss_pred ccEEEeccccchhh---HHHHHHhCCCCCCCcC
Q 032674 6 GGVVKKGHEEGMKV---ASSLLEEFGLPLGLLP 35 (136)
Q Consensus 6 ~ae~~~g~~~~~~t---a~elL~~~glP~GLLP 35 (136)
++.|+++++.+..+ ..++|++.|||.|++-
T Consensus 146 N~Vi~Kps~~~p~~~~~l~~~~~~aGlP~~~~~ 178 (453)
T cd07115 146 NTVVLKPAELTPLSALRIAELMAEAGFPAGVLN 178 (453)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHhcCcCchheE
Confidence 46788888876554 4589999999999886
No 31
>cd07102 ALDH_EDX86601 Uncharacterized aldehyde dehydrogenase of Synechococcus sp. PCC 7335 (EDX86601). Uncharacterized aldehyde dehydrogenase of Synechococcus sp. PCC 7335 (locus EDX86601) and other similar sequences, are present in this CD.
Probab=34.83 E-value=40 Score=29.07 Aligned_cols=30 Identities=23% Similarity=0.336 Sum_probs=22.6
Q ss_pred ccEEEeccccchhh---HHHHHHhCCCCCCCcC
Q 032674 6 GGVVKKGHEEGMKV---ASSLLEEFGLPLGLLP 35 (136)
Q Consensus 6 ~ae~~~g~~~~~~t---a~elL~~~glP~GLLP 35 (136)
++.|.+.++.+..+ ..++|++.|||.|++=
T Consensus 145 N~VVlKps~~~~~~~~~l~~~l~~aGlP~g~~~ 177 (452)
T cd07102 145 NAVILKHSPQTPLCGERFAAAFAEAGLPEGVFQ 177 (452)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHhcCCCcCcEE
Confidence 45677777765544 4589999999999865
No 32
>PF02402 Lysis_col: Lysis protein; InterPro: IPR003059 The DNA sequence of the entire colicin E2 operon has been determined []. The operon comprises the colicin activity gene (ceaB), the colicin immunity gene (ceiB) and the lysis gene (celB), which is essential for colicin release from producing cells []. A putative LexA binding site is located upstream from ceaB, and a rho-independent terminator structure is located downstream from celB []. Comparison of the amino acid sequences of colicin E2 and cloacin DF13 reveal extensive similarity. These colicins have different modes of action and recognise different cell surface receptors; the two major regions of heterology at the C terminus, and in the C-terminal end of the central region are thought to correspond to the catalytic and receptor-recognition domains, respectively []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. By contrast, the lysis proteins of the ColE2, ColE1 and CloDF13 plasmids are almost identical except in the N-terminal regions, which themselves are similar to lipoprotein signal peptides []. Processing of the ColE2 prolysis protein to the mature form is prevented by globomycin, a specific inhibitor of the lipoprotein signal peptidase []. The mature ColE2 lysis protein is located in the cell envelope [].; GO: 0009405 pathogenesis, 0019835 cytolysis, 0019867 outer membrane
Probab=34.70 E-value=19 Score=22.62 Aligned_cols=26 Identities=23% Similarity=0.397 Sum_probs=19.6
Q ss_pred EEEEeeEEE-EEEecCceeeccceEEE
Q 032674 69 LVSYDTEIT-GYVNKNVIKKLKGVKAK 94 (136)
Q Consensus 69 ~v~Y~~~It-G~i~~g~i~~L~GVk~K 94 (136)
++.|-+-+. |.+++-+-++|+||+++
T Consensus 20 QaN~iRDvqGGtVaPSSss~lTGv~~q 46 (46)
T PF02402_consen 20 QANYIRDVQGGTVAPSSSSELTGVAVQ 46 (46)
T ss_pred hhcceecCCCceECCCccceeeeeecC
Confidence 455555554 49999999999999864
No 33
>PRK09407 gabD2 succinic semialdehyde dehydrogenase; Reviewed
Probab=34.63 E-value=39 Score=30.18 Aligned_cols=30 Identities=37% Similarity=0.349 Sum_probs=24.0
Q ss_pred ccEEEeccccchhhH---HHHHHhCCCCCCCcC
Q 032674 6 GGVVKKGHEEGMKVA---SSLLEEFGLPLGLLP 35 (136)
Q Consensus 6 ~ae~~~g~~~~~~ta---~elL~~~glP~GLLP 35 (136)
++.|.+.++.+..++ .++|++.|||.|++=
T Consensus 183 N~VIlKPs~~tp~~~~~l~~ll~eaGlP~gvv~ 215 (524)
T PRK09407 183 NAVVLKPDSQTPLTALAAVELLYEAGLPRDLWQ 215 (524)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHcCCCcccEE
Confidence 467888888776655 589999999999875
No 34
>cd07127 ALDH_PAD-PaaZ Phenylacetic acid degradation proteins PaaZ (Escherichia coli) and PaaN (Pseudomonas putida)-like. Phenylacetic acid degradation (PAD) proteins PaaZ (Escherichia coli) and PaaN (Pseudomonas putida) are putative aromatic ring cleavage enzymes of the aerobic PA catabolic pathway. PaaZ mutants were defective for growth with PA as a sole carbon source due to interruption of the putative ring opening system. This CD is limited to bacterial monofunctional enzymes.
Probab=34.61 E-value=34 Score=31.10 Aligned_cols=31 Identities=26% Similarity=0.341 Sum_probs=24.4
Q ss_pred ccEEEeccccchhhH-------HHHHHhCCCCCCCcCc
Q 032674 6 GGVVKKGHEEGMKVA-------SSLLEEFGLPLGLLPL 36 (136)
Q Consensus 6 ~ae~~~g~~~~~~ta-------~elL~~~glP~GLLP~ 36 (136)
++.|.+.++.+..++ .++|++.|||.|++-+
T Consensus 222 N~VVvKPs~~a~ls~~~~~~~i~~~l~eAGlP~gvv~~ 259 (549)
T cd07127 222 NPVIVKPHPAAILPLAITVQVAREVLAEAGFDPNLVTL 259 (549)
T ss_pred CeEEEECCcccchhHHHHHHHHHHHHHHcCcCcccEEE
Confidence 467888888776553 3899999999999863
No 35
>cd07111 ALDH_F16 Aldehyde dehydrogenase family 16A1-like. Uncharacterized aldehyde dehydrogenase family 16 member A1 (ALDH16A1) and other related sequences are present in this CD. The active site cysteine and glutamate residues are not conserved in the human ALDH16A1 protein sequence.
Probab=34.43 E-value=39 Score=29.85 Aligned_cols=30 Identities=37% Similarity=0.377 Sum_probs=23.6
Q ss_pred ccEEEeccccchhhH---HHHHHhCCCCCCCcC
Q 032674 6 GGVVKKGHEEGMKVA---SSLLEEFGLPLGLLP 35 (136)
Q Consensus 6 ~ae~~~g~~~~~~ta---~elL~~~glP~GLLP 35 (136)
++.|.++++.+..++ .++|++.|||.|++=
T Consensus 176 N~VVlKps~~tp~~~~~l~~~~~~aGlP~gvv~ 208 (480)
T cd07111 176 NTVVLKPAEYTPLTALLFAEICAEAGLPPGVLN 208 (480)
T ss_pred CEEEEECCCCChHHHHHHHHHHHhcCCCcccEE
Confidence 467888888766554 589999999999875
No 36
>PF08300 HCV_NS5a_1a: Hepatitis C virus non-structural 5a zinc finger domain; InterPro: IPR013192 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in the non-structural 5a protein (NS5a) in Hepatitis C virus. The molecular function of NS5a is uncertain, but it is phosphorylated when expressed in mammalian cells. It is thought to interact with the dsRNA dependent (interferon inducible) kinase PKR, P19525 from SWISSPROT [, ]. This region corresponds to the N-terminal zinc binding domain (1a) []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003968 RNA-directed RNA polymerase activity, 0004252 serine-type endopeptidase activity, 0008270 zinc ion binding, 0017111 nucleoside-triphosphatase activity, 0006355 regulation of transcription, DNA-dependent, 0006915 apoptosis, 0030683 evasion by virus of host immune response, 0005789 endoplasmic reticulum membrane, 0016021 integral to membrane; PDB: 1ZH1_B 3FQM_A 3FQQ_B.
Probab=34.41 E-value=37 Score=22.60 Aligned_cols=17 Identities=29% Similarity=0.522 Sum_probs=12.8
Q ss_pred eeEEEEEEecCceeeccc
Q 032674 73 DTEITGYVNKNVIKKLKG 90 (136)
Q Consensus 73 ~~~ItG~i~~g~i~~L~G 90 (136)
...|+|.|.+|+|+ +.|
T Consensus 27 Ga~ItGhVknG~mr-i~g 43 (62)
T PF08300_consen 27 GAVITGHVKNGSMR-IYG 43 (62)
T ss_dssp S-EEEEEEETTEEE-EE-
T ss_pred CCEEeEEEeCCeEE-Eec
Confidence 47899999999998 444
No 37
>cd07104 ALDH_BenzADH-like ALDH subfamily: NAD(P)+-dependent benzaldehyde dehydrogenase II, vanillin dehydrogenase, p-hydroxybenzaldehyde dehydrogenase and related proteins. ALDH subfamily which includes the NAD(P)+-dependent, benzaldehyde dehydrogenase II (XylC, BenzADH, EC=1.2.1.28) involved in the oxidation of benzyl alcohol to benzoate; p-hydroxybenzaldehyde dehydrogenase (PchA, HBenzADH) which catalyzes the oxidation of p-hydroxybenzaldehyde to p-hydroxybenzoic acid; vanillin dehydrogenase (Vdh, VaniDH) involved in the metabolism of ferulic acid as seen in Pseudomonas putida KT2440; and other related sequences.
Probab=34.21 E-value=40 Score=28.74 Aligned_cols=30 Identities=33% Similarity=0.454 Sum_probs=23.5
Q ss_pred ccEEEeccccchhh----HHHHHHhCCCCCCCcC
Q 032674 6 GGVVKKGHEEGMKV----ASSLLEEFGLPLGLLP 35 (136)
Q Consensus 6 ~ae~~~g~~~~~~t----a~elL~~~glP~GLLP 35 (136)
++.|++.++.+..+ ..++|++.|||.|++-
T Consensus 127 N~Vi~Kps~~~p~~~~~~l~~~l~~aGlP~gvv~ 160 (431)
T cd07104 127 NAVVLKPDSRTPVTGGLLIAEIFEEAGLPKGVLN 160 (431)
T ss_pred CeEEeeCCCCChHHHHHHHHHHHHHcCCCcccEE
Confidence 45788888876543 4699999999999886
No 38
>cd07088 ALDH_LactADH-AldA Escherichia coli lactaldehyde dehydrogenase AldA-like. Lactaldehyde dehydrogenase from Escherichia coli (AldA, LactADH, EC=1.2.1.22), an NAD(+)-dependent enzyme involved in the metabolism of L-fucose and L-rhamnose, and other similar sequences are present in this CD.
Probab=34.09 E-value=41 Score=29.16 Aligned_cols=30 Identities=37% Similarity=0.465 Sum_probs=22.9
Q ss_pred ccEEEeccccchhh---HHHHHHhCCCCCCCcC
Q 032674 6 GGVVKKGHEEGMKV---ASSLLEEFGLPLGLLP 35 (136)
Q Consensus 6 ~ae~~~g~~~~~~t---a~elL~~~glP~GLLP 35 (136)
++.|.+.++.+..+ ..++|++.|||.|++=
T Consensus 162 N~VVlKps~~~p~~~~~l~~~~~~aglP~gvv~ 194 (468)
T cd07088 162 NTIVIKPSEETPLNALEFAELVDEAGLPAGVLN 194 (468)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHcCcCccceE
Confidence 45677887766554 4589999999999875
No 39
>PRK13493 chemoreceptor glutamine deamidase CheD; Provisional
Probab=34.06 E-value=78 Score=25.61 Aligned_cols=36 Identities=19% Similarity=0.370 Sum_probs=28.8
Q ss_pred hhHHHHHHhCCCCC------CCcCcCCceEEEEEccCCeEEEEeCC
Q 032674 18 KVASSLLEEFGLPL------GLLPLADVIEVGFVQTTGYMWILQKK 57 (136)
Q Consensus 18 ~ta~elL~~~glP~------GLLP~~~V~~y~l~~~tG~f~v~l~~ 57 (136)
+.|.++|+++|+|. |-.+ ..|. |+..||.+|++...
T Consensus 142 ~~a~~~L~~~gI~Iva~DvGG~~g-Rki~---f~~~tG~v~vk~~~ 183 (213)
T PRK13493 142 EFVLEYAKREKLNVVAQDLGGAQP-RKLL---FDPQTGQAWVKRIG 183 (213)
T ss_pred HHHHHHHHHcCCcEEEEeCCCCCC-cEEE---EECCCCEEEEEEcC
Confidence 57889999999994 7777 3453 77899999999764
No 40
>cd07098 ALDH_F15-22 Aldehyde dehydrogenase family 15A1 and 22A1-like. Aldehyde dehydrogenase family members ALDH15A1 (Saccharomyces cerevisiae YHR039C) and ALDH22A1 (Arabidopsis thaliana, EC=1.2.1.3), and similar sequences, are in this CD. Significant improvement of stress tolerance in tobacco plants was observed by overexpressing the ALDH22A1 gene from maize (Zea mays) and was accompanied by a reduction of malondialdehyde derived from cellular lipid peroxidation.
Probab=33.88 E-value=40 Score=29.26 Aligned_cols=30 Identities=20% Similarity=0.147 Sum_probs=22.4
Q ss_pred ccEEEeccccchhhHH-------HHHHhCCCCCCCcC
Q 032674 6 GGVVKKGHEEGMKVAS-------SLLEEFGLPLGLLP 35 (136)
Q Consensus 6 ~ae~~~g~~~~~~ta~-------elL~~~glP~GLLP 35 (136)
++.|.+.++.+..+++ ++|++.|||.|++=
T Consensus 149 N~VIlKps~~~p~~~~~~~~~~~~~l~~aGlP~gvv~ 185 (465)
T cd07098 149 NAIVVKVSEQVAWSSGFFLSIIRECLAACGHDPDLVQ 185 (465)
T ss_pred CEEEEECCCcCcHHHHHHHHHHHHHHHhcCCCCCeEE
Confidence 4577788887766554 55679999999765
No 41
>cd03694 GTPBP_II Domain II of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=33.51 E-value=1e+02 Score=20.64 Aligned_cols=35 Identities=26% Similarity=0.169 Sum_probs=25.7
Q ss_pred eeEEEEEEecCceeeccceEEEEE------EeecceeEEEEcC
Q 032674 73 DTEITGYVNKNVIKKLKGVKAKEL------MLWPPVSEIKVDD 109 (136)
Q Consensus 73 ~~~ItG~i~~g~i~~L~GVk~K~l------f~W~~I~eI~vd~ 109 (136)
.+.|+|+|+.|+|+ .|-++..+ +....|..|.+.+
T Consensus 15 GtVv~G~v~~G~v~--~g~~v~~~P~~~g~~~~~~V~sI~~~~ 55 (87)
T cd03694 15 GTVVGGTVSKGVIR--LGDTLLLGPDQDGSFRPVTVKSIHRNR 55 (87)
T ss_pred ceEEEEEEecCEEe--CCCEEEECCCCCCCEeEEEEEEEEECC
Confidence 56899999999998 45555443 2467888888765
No 42
>cd07097 ALDH_KGSADH-YcbD Bacillus subtilis NADP+-dependent alpha-ketoglutaric semialdehyde dehydrogenase ycbD-like. Kinetic studies of the Bacillus subtilis ALDH-like ycbD protein, which is involved in d-glucarate/d-galactarate utilization, reveal that it is a NADP+-dependent, alpha-ketoglutaric semialdehyde dehydrogenase (KGSADH). KGSADHs (EC 1.2.1.26) catalyze the NAD(P)+-dependent conversion of KGSA to alpha-ketoglutarate. Interestingly, the NADP+-dependent, tetrameric, 2,5-dioxopentanoate dehydrogenase (EC=1.2.1.26), an enzyme involved in the catabolic pathway for D-arabinose in Sulfolobus solfataricus, also clusters in this group. This CD shows a distant phylogenetic relationship to the Azospirillum brasilense KGSADH-II (-III) group.
Probab=33.39 E-value=42 Score=29.28 Aligned_cols=30 Identities=40% Similarity=0.438 Sum_probs=23.0
Q ss_pred ccEEEeccccchhhH---HHHHHhCCCCCCCcC
Q 032674 6 GGVVKKGHEEGMKVA---SSLLEEFGLPLGLLP 35 (136)
Q Consensus 6 ~ae~~~g~~~~~~ta---~elL~~~glP~GLLP 35 (136)
++.|++.++.+..++ .++|.+.|||.|++=
T Consensus 164 N~VIlKps~~~p~~~~~l~~~~~~aGlP~gvv~ 196 (473)
T cd07097 164 NTVVFKPAELTPASAWALVEILEEAGLPAGVFN 196 (473)
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHcCCCCcceE
Confidence 457888888766654 488999999999764
No 43
>PRK13498 chemoreceptor glutamine deamidase CheD; Provisional
Probab=33.27 E-value=85 Score=24.31 Aligned_cols=36 Identities=25% Similarity=0.337 Sum_probs=27.6
Q ss_pred hhHHHHHHhCCCCC------CCcCcCCceEEEEEccCCeEEEEeCC
Q 032674 18 KVASSLLEEFGLPL------GLLPLADVIEVGFVQTTGYMWILQKK 57 (136)
Q Consensus 18 ~ta~elL~~~glP~------GLLP~~~V~~y~l~~~tG~f~v~l~~ 57 (136)
+.|.++|+++|+|. |--+ ..| .|+.+||.+|++.-.
T Consensus 118 ~~a~~~L~~~gi~i~a~DvGG~~g-R~i---~f~~~tG~v~vk~~~ 159 (167)
T PRK13498 118 HAALALAEQNGLHLKAQDLGSTGH-RSI---IFDLWNGNVWVRHQP 159 (167)
T ss_pred HHHHHHHHHCCCcEEEEeCCCCCC-cEE---EEECCCCEEEEEECC
Confidence 46889999999994 5555 234 477899999998653
No 44
>TIGR03240 arg_catab_astD succinylglutamic semialdehyde dehydrogenase. Members of this protein family are succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71), the fourth enzyme in the arginine succinyltransferase (AST) pathway for arginine catabolism.
Probab=33.10 E-value=40 Score=29.62 Aligned_cols=30 Identities=43% Similarity=0.428 Sum_probs=23.3
Q ss_pred ccEEEeccccchhhHH---HHHHhCCCCCCCcC
Q 032674 6 GGVVKKGHEEGMKVAS---SLLEEFGLPLGLLP 35 (136)
Q Consensus 6 ~ae~~~g~~~~~~ta~---elL~~~glP~GLLP 35 (136)
++.|.++++.+..++. ++|++.|||.|++=
T Consensus 161 N~VVlKPs~~tp~t~~~l~~~~~~aGlP~gvv~ 193 (484)
T TIGR03240 161 NTVVFKPSELTPWVAEETVKLWEKAGLPAGVLN 193 (484)
T ss_pred CEEEEECCccccHHHHHHHHHHHHhCcCcccEE
Confidence 4678888887765544 77999999999864
No 45
>cd07141 ALDH_F1AB_F2_RALDH1 NAD+-dependent retinal dehydrogenase 1, ALDH families 1A, 1B, and 2-like. NAD+-dependent retinal dehydrogenase 1 (RALDH 1, ALDH1, EC=1.2.1.36) also known as aldehyde dehydrogenase family 1 member A1 (ALDH1A1) in humans, is a homotetrameric, cytosolic enzyme that catalyzes the oxidation of retinaldehyde to retinoic acid. Human ALDH1B1 and ALDH2 are also in this cluster; both are mitochrondrial homotetramers which play important roles in acetaldehyde oxidation; ALDH1B1 in response to UV light exposure and ALDH2 during ethanol metabolism.
Probab=33.05 E-value=42 Score=29.40 Aligned_cols=30 Identities=37% Similarity=0.475 Sum_probs=23.6
Q ss_pred ccEEEeccccchhhH---HHHHHhCCCCCCCcC
Q 032674 6 GGVVKKGHEEGMKVA---SSLLEEFGLPLGLLP 35 (136)
Q Consensus 6 ~ae~~~g~~~~~~ta---~elL~~~glP~GLLP 35 (136)
++.|+++++.+..++ .++|++.|||.|++=
T Consensus 174 N~VVlKps~~~p~~~~~l~~~l~~aGlP~gvv~ 206 (481)
T cd07141 174 NTVVLKPAEQTPLTALYLASLIKEAGFPPGVVN 206 (481)
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHcCcCccceE
Confidence 467888888766554 489999999999875
No 46
>PRK00197 proA gamma-glutamyl phosphate reductase; Provisional
Probab=32.94 E-value=35 Score=29.56 Aligned_cols=31 Identities=35% Similarity=0.588 Sum_probs=23.9
Q ss_pred ccEEEeccccchhhHHHH-------HHhCCCCCCCcCc
Q 032674 6 GGVVKKGHEEGMKVASSL-------LEEFGLPLGLLPL 36 (136)
Q Consensus 6 ~ae~~~g~~~~~~ta~el-------L~~~glP~GLLP~ 36 (136)
++.|++.++.+..++..+ |++.|||.|++=+
T Consensus 142 N~vVlKPs~~tp~t~~~l~~l~~~~l~~aGlP~gv~~~ 179 (417)
T PRK00197 142 NAVILRGGSEAIHSNRALVAVIQEALEEAGLPADAVQL 179 (417)
T ss_pred CeEEEecChhhhHHHHHHHHHHHHHHHHcCcChhhEEE
Confidence 467889998887776533 6788999999873
No 47
>cd03865 M14_CPE_H Peptidase M14 Carboxypeptidase (CP) E (CPE, also known as carboxypeptidase H, and enkephalin convertase; EC 3.4.17.10) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPE is an important enzyme responsible for the proteolytic processing of prohormone intermediates (such as pro-insulin, pro-opiomelanocortin, or pro-gonadotropin-releasing hormone) by specifically removing C-terminal basic residues. In addition, it has been proposed that the regulated secretory pathway (RSP) of the nervous and endocrine systems utilizes membrane-bound CPE as a sorting receptor. A naturally occurring point mutation in CPE reduces the stability of the enzyme and causes its degradation, leading to an accumulation of numerous neuroendocrine pe
Probab=32.82 E-value=25 Score=30.99 Aligned_cols=64 Identities=11% Similarity=0.183 Sum_probs=44.5
Q ss_pred CCCCCC--------cCcCCceEEEEEccCCeEEEEeCCeEEEEEeecC-----------------EEEEEeeEEEEEEec
Q 032674 28 GLPLGL--------LPLADVIEVGFVQTTGYMWILQKKKVEHSFKMVK-----------------KLVSYDTEITGYVNK 82 (136)
Q Consensus 28 glP~GL--------LP~~~V~~y~l~~~tG~f~v~l~~~c~~~f~~~~-----------------~~v~Y~~~ItG~i~~ 82 (136)
-|+.|+ ++ +++++|.|. -|+-|+|.+.=.| |+|...+ .+++. -|+|+|..
T Consensus 260 ~f~~GitNGa~Wy~~~-GgmqD~ny~-~~nc~eiT~El~c-~K~P~~~~L~~~W~~n~~all~~~~q~~~--gI~G~V~D 334 (402)
T cd03865 260 SFVDGTTNGGAWYSVP-GGMQDFNYL-SSNCFEITVELSC-DKFPPEETLKQYWEDNKNSLVNYIEQVHR--GVKGFVKD 334 (402)
T ss_pred cCCCCeecCceecccC-Ccccchhhh-ccCceEEEEEecC-CCCCCHHHHHHHHHHHHHHHHHHHHHhcc--ceEEEEEC
Confidence 467777 56 799999998 4888888888778 6887543 23443 49999977
Q ss_pred CceeeccceEEEEE
Q 032674 83 NVIKKLKGVKAKEL 96 (136)
Q Consensus 83 g~i~~L~GVk~K~l 96 (136)
.+=.-+.|.++++.
T Consensus 335 ~~g~pI~~AtV~V~ 348 (402)
T cd03865 335 LQGNPIANATISVE 348 (402)
T ss_pred CCCCcCCCeEEEEE
Confidence 53245667666654
No 48
>cd07105 ALDH_SaliADH Salicylaldehyde dehydrogenase, DoxF-like. Salicylaldehyde dehydrogenase (DoxF, SaliADH, EC=1.2.1.65) involved in the upper naphthalene catabolic pathway of Pseudomonas strain C18 and other similar sequences are present in this CD.
Probab=32.30 E-value=47 Score=28.58 Aligned_cols=30 Identities=33% Similarity=0.462 Sum_probs=22.8
Q ss_pred ccEEEeccccchhh---HHHHHHhCCCCCCCcC
Q 032674 6 GGVVKKGHEEGMKV---ASSLLEEFGLPLGLLP 35 (136)
Q Consensus 6 ~ae~~~g~~~~~~t---a~elL~~~glP~GLLP 35 (136)
++.|.+.++.+..+ ..++|++.|||.|++-
T Consensus 127 N~VVlKps~~~p~~~~~l~~~~~~aGlP~gv~~ 159 (432)
T cd07105 127 NTVVLKASELSPRTHWLIGRVFHEAGLPKGVLN 159 (432)
T ss_pred CEEEEECCccChHHHHHHHHHHHHcCcCCCcEE
Confidence 45677777765554 4589999999999875
No 49
>PRK13490 chemoreceptor glutamine deamidase CheD; Provisional
Probab=32.14 E-value=86 Score=24.14 Aligned_cols=36 Identities=22% Similarity=0.346 Sum_probs=27.5
Q ss_pred hhHHHHHHhCCCCC------CCcCcCCceEEEEEccCCeEEEEeCC
Q 032674 18 KVASSLLEEFGLPL------GLLPLADVIEVGFVQTTGYMWILQKK 57 (136)
Q Consensus 18 ~ta~elL~~~glP~------GLLP~~~V~~y~l~~~tG~f~v~l~~ 57 (136)
+.|.++|+++|+|. |--+ ..| .|+..||.+|++...
T Consensus 115 ~~a~~~L~~~gI~i~a~dvGG~~g-R~i---~f~~~tG~v~vk~~~ 156 (162)
T PRK13490 115 KAVKKKLKELSIPILAEDIGGNKG-RTM---IFDTSDGKVYIKTVG 156 (162)
T ss_pred HHHHHHHHHcCCcEEEEECCCCCC-cEE---EEECCCCEEEEEEcC
Confidence 46889999999994 6666 334 477889999998543
No 50
>cd07143 ALDH_AldA_AN0554 Aspergillus nidulans aldehyde dehydrogenase, AldA (AN0554)-like. NAD(P)+-dependent aldehyde dehydrogenase (AldA) of Aspergillus nidulans (locus AN0554), and other similar sequences, are present in this CD.
Probab=31.92 E-value=45 Score=29.36 Aligned_cols=31 Identities=26% Similarity=0.365 Sum_probs=23.9
Q ss_pred ccEEEeccccchhh---HHHHHHhCCCCCCCcCc
Q 032674 6 GGVVKKGHEEGMKV---ASSLLEEFGLPLGLLPL 36 (136)
Q Consensus 6 ~ae~~~g~~~~~~t---a~elL~~~glP~GLLP~ 36 (136)
++.|.+.++.+..+ ..++|.+.|||.|++-+
T Consensus 173 N~VvlKps~~~p~~~~~l~~~l~~aGlP~g~v~~ 206 (481)
T cd07143 173 NTIVLKPSELTPLSALYMTKLIPEAGFPPGVINV 206 (481)
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHhcCcCcccEEE
Confidence 45788888876554 45899999999998874
No 51
>PLN02766 coniferyl-aldehyde dehydrogenase
Probab=31.83 E-value=46 Score=29.55 Aligned_cols=31 Identities=23% Similarity=0.232 Sum_probs=23.6
Q ss_pred ccEEEeccccchhh---HHHHHHhCCCCCCCcCc
Q 032674 6 GGVVKKGHEEGMKV---ASSLLEEFGLPLGLLPL 36 (136)
Q Consensus 6 ~ae~~~g~~~~~~t---a~elL~~~glP~GLLP~ 36 (136)
++.|.+.++.+..+ ..++|++.|||.|++=+
T Consensus 187 N~VVlKPs~~tp~~~~~l~~~~~~aGlP~gvv~~ 220 (501)
T PLN02766 187 CTMVVKPAEQTPLSALFYAHLAKLAGVPDGVINV 220 (501)
T ss_pred CEEEEeCCCCchHHHHHHHHHHHhcCCCcCcEEE
Confidence 46677888776554 34889999999999863
No 52
>cd07083 ALDH_P5CDH ALDH subfamily NAD+-dependent delta(1)-pyrroline-5-carboxylate dehydrogenase-like. ALDH subfamily of the NAD+-dependent, delta(1)-pyrroline-5-carboxylate dehydrogenases (P5CDH, EC=1.5.1.12). The proline catabolic enzymes, proline dehydrogenase and P5CDH catalyze the two-step oxidation of proline to glutamate. P5CDH catalyzes the oxidation of glutamate semialdehyde, utilizing NAD+ as the electron acceptor. In some bacteria, the two enzymes are fused into the bifunctional flavoenzyme, proline utilization A (PutA). These enzymes play important roles in cellular redox control, superoxide generation, and apoptosis. In certain prokaryotes such as Escherichia coli, PutA is also a transcriptional repressor of the proline utilization genes. Monofunctional enzyme sequences such as those seen in the Bacillus RocA P5CDH are also present in this subfamily as well as the human ALDH4A1 P5CDH and the Drosophila Aldh17 P5CDH.
Probab=31.79 E-value=48 Score=29.30 Aligned_cols=30 Identities=27% Similarity=0.496 Sum_probs=23.2
Q ss_pred ccEEEeccccchhhH---HHHHHhCCCCCCCcC
Q 032674 6 GGVVKKGHEEGMKVA---SSLLEEFGLPLGLLP 35 (136)
Q Consensus 6 ~ae~~~g~~~~~~ta---~elL~~~glP~GLLP 35 (136)
++.|++.++.+..++ .++|++.|||.|++=
T Consensus 183 N~VVlKPs~~tp~~~~~l~~~~~eaGlP~gvv~ 215 (500)
T cd07083 183 NTVIAKPAEDAVVVGYKVFEIFHEAGFPPGVVQ 215 (500)
T ss_pred CeEEEeCCCcchHHHHHHHHHHHHcCCCCCceE
Confidence 467788887765554 588999999999986
No 53
>cd07151 ALDH_HBenzADH NADP+-dependent p-hydroxybenzaldehyde dehydrogenase-like. NADP+-dependent, p-hydroxybenzaldehyde dehydrogenase (PchA, HBenzADH) which catalyzes oxidation of p-hydroxybenzaldehyde to p-hydroxybenzoic acid and other related sequences are included in this CD.
Probab=31.45 E-value=47 Score=28.91 Aligned_cols=31 Identities=32% Similarity=0.461 Sum_probs=24.0
Q ss_pred ccEEEeccccchhh----HHHHHHhCCCCCCCcCc
Q 032674 6 GGVVKKGHEEGMKV----ASSLLEEFGLPLGLLPL 36 (136)
Q Consensus 6 ~ae~~~g~~~~~~t----a~elL~~~glP~GLLP~ 36 (136)
++.|.+.++.+..+ ..++|++.|||.|++-+
T Consensus 159 N~Vi~Kps~~~p~~~~~~l~~~l~~aG~P~gvv~~ 193 (465)
T cd07151 159 NAVVLKPASDTPITGGLLLAKIFEEAGLPKGVLNV 193 (465)
T ss_pred CEEEEECCCCCcHhHHHHHHHHHHHcCcCccceEE
Confidence 46788888776544 46899999999998863
No 54
>PRK13495 chemoreceptor glutamine deamidase CheD; Provisional
Probab=31.34 E-value=91 Score=23.99 Aligned_cols=36 Identities=19% Similarity=0.380 Sum_probs=27.2
Q ss_pred hhHHHHHHhCCCCC------CCcCcCCceEEEEEccCCeEEEEeCC
Q 032674 18 KVASSLLEEFGLPL------GLLPLADVIEVGFVQTTGYMWILQKK 57 (136)
Q Consensus 18 ~ta~elL~~~glP~------GLLP~~~V~~y~l~~~tG~f~v~l~~ 57 (136)
+.|.++|+++|+|. |--+ ..| .|+.+||.+|++...
T Consensus 108 ~~a~~~L~~~gI~i~a~dvGG~~g-R~i---~f~~~tG~v~vk~~~ 149 (159)
T PRK13495 108 EAVKKHLKDFGIKLVAEDTGGNRA-RSI---EYNIETGKLLVRKVG 149 (159)
T ss_pred HHHHHHHHHcCCcEEEEeCCCCCC-cEE---EEECCCCEEEEEEcC
Confidence 46889999999994 5555 234 477889999998654
No 55
>cd07140 ALDH_F1L_FTFDH 10-formyltetrahydrofolate dehydrogenase, ALDH family 1L. 10-formyltetrahydrofolate dehydrogenase (FTHFDH, EC=1.5.1.6), also known as aldehyde dehydrogenase family 1 member L1 (ALDH1L1) in humans, is a multi-domain homotetramer with an N-terminal formyl transferase domain and a C-terminal ALDH domain. FTHFDH catalyzes an NADP+-dependent dehydrogenase reaction resulting in the conversion of 10-formyltetrahydrofolate to tetrahydrofolate and CO2. The ALDH domain is also capable of the oxidation of short chain aldehydes to their corresponding acids.
Probab=31.23 E-value=47 Score=29.38 Aligned_cols=31 Identities=26% Similarity=0.320 Sum_probs=24.4
Q ss_pred ccEEEeccccchhhH---HHHHHhCCCCCCCcCc
Q 032674 6 GGVVKKGHEEGMKVA---SSLLEEFGLPLGLLPL 36 (136)
Q Consensus 6 ~ae~~~g~~~~~~ta---~elL~~~glP~GLLP~ 36 (136)
++.|.+..+.+..++ .++|.+.|||.|++=+
T Consensus 176 N~VVlKPs~~tp~~~~~l~~~~~~aglP~gv~~~ 209 (486)
T cd07140 176 NTVVLKPAQVTPLTALKFAELTVKAGFPKGVINI 209 (486)
T ss_pred CEEEEECCccCcHHHHHHHHHHHHcCcCCCcEEE
Confidence 467888888876665 4788899999998863
No 56
>cd07093 ALDH_F8_HMSADH Human aldehyde dehydrogenase family 8 member A1-like. In humans, the aldehyde dehydrogenase family 8 member A1 (ALDH8A1) protein functions to convert 9-cis-retinal to 9-cis-retinoic acid and has a preference for NAD+. Also included in this CD is the 2-hydroxymuconic semialdehyde dehydrogenase (HMSADH) which catalyzes the conversion of 2-hydroxymuconic semialdehyde to 4-oxalocrotonate, a step in the meta cleavage pathway of aromatic hydrocarbons in bacteria. Such HMSADHs seen here are: XylG of the TOL plasmid pWW0 of Pseudomonas putida, TomC of Burkholderia cepacia G4, and AphC of Comamonas testosterone.
Probab=31.02 E-value=49 Score=28.51 Aligned_cols=31 Identities=32% Similarity=0.337 Sum_probs=23.2
Q ss_pred ccEEEeccccchhh---HHHHHHhCCCCCCCcCc
Q 032674 6 GGVVKKGHEEGMKV---ASSLLEEFGLPLGLLPL 36 (136)
Q Consensus 6 ~ae~~~g~~~~~~t---a~elL~~~glP~GLLP~ 36 (136)
++.|.+.++.+..+ ..++|++.|||.|++-+
T Consensus 146 N~VIlkps~~~p~~~~~l~~~l~~aglP~g~v~~ 179 (455)
T cd07093 146 NTVVLKPSEWTPLTAWLLAELANEAGLPPGVVNV 179 (455)
T ss_pred CEEEeECCCcCcHHHHHHHHHHHhcCCCccceEE
Confidence 45677777665544 55899999999998863
No 57
>cd07100 ALDH_SSADH1_GabD1 Mycobacterium tuberculosis succinate-semialdehyde dehydrogenase 1-like. Succinate-semialdehyde dehydrogenase 1 (SSADH1, GabD1, EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation of succinate semialdehyde (SSA) to succinate. SSADH activity in Mycobacterium tuberculosis (Mtb) is encoded by both gabD1 (Rv0234c) and gabD2 (Rv1731). The Mtb GabD1 SSADH1 reportedly is an enzyme of the gamma-aminobutyrate shunt, which forms a functional link between two TCA half-cycles by converting alpha-ketoglutarate to succinate.
Probab=30.99 E-value=51 Score=28.41 Aligned_cols=30 Identities=23% Similarity=0.319 Sum_probs=23.4
Q ss_pred ccEEEeccccchhh---HHHHHHhCCCCCCCcC
Q 032674 6 GGVVKKGHEEGMKV---ASSLLEEFGLPLGLLP 35 (136)
Q Consensus 6 ~ae~~~g~~~~~~t---a~elL~~~glP~GLLP 35 (136)
++.|++.++.+..+ ..++|.+.|||.|++-
T Consensus 125 N~VV~Kps~~~p~~~~~l~~~l~~aglP~gvv~ 157 (429)
T cd07100 125 NTVLLKHASNVPGCALAIEELFREAGFPEGVFQ 157 (429)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHcCCCcCcEE
Confidence 45677888776555 4589999999999987
No 58
>cd07142 ALDH_F2BC Arabidosis aldehyde dehydrogenase family 2 B4, B7, C4-like. Included in this CD is the Arabidosis aldehyde dehydrogenase family 2 members B4 and B7 (EC=1.2.1.3), which are mitochondrial homotetramers that oxidize acetaldehyde and glycolaldehyde, but not L-lactaldehyde. Also in this group, is the Arabidosis cytosolic, homotetramer ALDH2C4 (EC=1.2.1.3), an enzyme involved in the oxidation of sinapalehyde and coniferaldehyde.
Probab=30.87 E-value=48 Score=29.02 Aligned_cols=31 Identities=35% Similarity=0.425 Sum_probs=23.7
Q ss_pred ccEEEeccccchhh---HHHHHHhCCCCCCCcCc
Q 032674 6 GGVVKKGHEEGMKV---ASSLLEEFGLPLGLLPL 36 (136)
Q Consensus 6 ~ae~~~g~~~~~~t---a~elL~~~glP~GLLP~ 36 (136)
++.|++.++.+..+ ..++|++.|||.|++-+
T Consensus 170 N~VV~KPs~~tp~~~~~l~~~~~~aGlP~gvv~~ 203 (476)
T cd07142 170 NTIVLKPAEQTPLSALLAAKLAAEAGLPDGVLNI 203 (476)
T ss_pred CEEEEECCCcccHHHHHHHHHHHHcCcCcccEEE
Confidence 46788888875444 45899999999999863
No 59
>PLN02466 aldehyde dehydrogenase family 2 member
Probab=30.87 E-value=46 Score=30.03 Aligned_cols=31 Identities=39% Similarity=0.498 Sum_probs=23.9
Q ss_pred ccEEEeccccchhhH---HHHHHhCCCCCCCcCc
Q 032674 6 GGVVKKGHEEGMKVA---SSLLEEFGLPLGLLPL 36 (136)
Q Consensus 6 ~ae~~~g~~~~~~ta---~elL~~~glP~GLLP~ 36 (136)
++.|++.++.+..++ .++|++.|||.|++=+
T Consensus 224 N~VVlKPs~~tp~~~~~l~~ll~eaGlP~gvv~v 257 (538)
T PLN02466 224 NTIVLKTAEQTPLSALYAAKLLHEAGLPPGVLNV 257 (538)
T ss_pred CEEEeECCCCCcHHHHHHHHHHHhcCCCcccEEE
Confidence 467888888765554 4899999999998863
No 60
>cd07112 ALDH_GABALDH-PuuC Escherichia coli NADP+-dependent gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase PuuC-like. NADP+-dependent, gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase (GABALDH) PuuC of Escherichia coli which catalyzes the conversion of putrescine to 4-aminobutanoate and other similar sequences are present in this CD.
Probab=30.38 E-value=47 Score=28.95 Aligned_cols=31 Identities=35% Similarity=0.423 Sum_probs=23.7
Q ss_pred ccEEEeccccchhh---HHHHHHhCCCCCCCcCc
Q 032674 6 GGVVKKGHEEGMKV---ASSLLEEFGLPLGLLPL 36 (136)
Q Consensus 6 ~ae~~~g~~~~~~t---a~elL~~~glP~GLLP~ 36 (136)
++.|.+.++.+..+ ..++|.+.|||.|++-+
T Consensus 153 N~Vv~Kps~~~p~~~~~l~~~~~~aGlP~g~v~~ 186 (462)
T cd07112 153 NSVVLKPAEQSPLTALRLAELALEAGLPAGVLNV 186 (462)
T ss_pred CeeeeeCCCCCCHHHHHHHHHHHhcCCCCCcEEE
Confidence 46788888766544 45899999999998873
No 61
>PLN02467 betaine aldehyde dehydrogenase
Probab=30.21 E-value=49 Score=29.43 Aligned_cols=31 Identities=29% Similarity=0.373 Sum_probs=23.9
Q ss_pred ccEEEeccccchhhH---HHHHHhCCCCCCCcCc
Q 032674 6 GGVVKKGHEEGMKVA---SSLLEEFGLPLGLLPL 36 (136)
Q Consensus 6 ~ae~~~g~~~~~~ta---~elL~~~glP~GLLP~ 36 (136)
++.|++.++.+..++ .++|++.|||.|++-+
T Consensus 180 N~Vv~Kps~~tp~~~~~l~~~~~eag~P~gvv~~ 213 (503)
T PLN02467 180 CTAVLKPSELASVTCLELADICREVGLPPGVLNV 213 (503)
T ss_pred CEEEEECCCcCcHHHHHHHHHHHHcCcCcCeEEE
Confidence 567888887765554 4889999999998863
No 62
>TIGR01780 SSADH succinate-semialdehyde dehydrogenase. SSADH enzyme belongs to the aldehyde dehydrogenase family (pfam00171), sharing a common evolutionary origin and enzymatic mechanism with lactaldehyde dehydrogenase. Like in lactaldehyde dehydrogenase and succinate semialdehyde dehydrogenase, the mammalian catalytic glutamic acid and cysteine residues are conserved in all the enzymes of this family (PS00687, PS00070).
Probab=30.02 E-value=51 Score=28.55 Aligned_cols=30 Identities=33% Similarity=0.372 Sum_probs=23.0
Q ss_pred ccEEEeccccchhh---HHHHHHhCCCCCCCcC
Q 032674 6 GGVVKKGHEEGMKV---ASSLLEEFGLPLGLLP 35 (136)
Q Consensus 6 ~ae~~~g~~~~~~t---a~elL~~~glP~GLLP 35 (136)
++.|++.++.+..+ ..++|++.|||.|++=
T Consensus 146 N~VvlKps~~~p~~~~~l~~~~~~aGlP~gvv~ 178 (448)
T TIGR01780 146 CTVVVKPAEQTPLSALALARLAEQAGIPKGVLN 178 (448)
T ss_pred CeEeeECCccchHHHHHHHHHHHHcCCCccceE
Confidence 46678888766555 4588999999999875
No 63
>cd07145 ALDH_LactADH_F420-Bios Methanocaldococcus jannaschii NAD+-dependent lactaldehyde dehydrogenase-like. NAD+-dependent, lactaldehyde dehydrogenase (EC=1.2.1.22) involved the biosynthesis of coenzyme F(420) in Methanocaldococcus jannaschii through the oxidation of lactaldehyde to lactate and generation of NAPH, and similar sequences are included in this CD.
Probab=29.82 E-value=53 Score=28.43 Aligned_cols=30 Identities=37% Similarity=0.493 Sum_probs=24.0
Q ss_pred ccEEEeccccchhhH---HHHHHhCCCCCCCcC
Q 032674 6 GGVVKKGHEEGMKVA---SSLLEEFGLPLGLLP 35 (136)
Q Consensus 6 ~ae~~~g~~~~~~ta---~elL~~~glP~GLLP 35 (136)
++.|.+.++.+..++ .++|++.|||.|++-
T Consensus 152 N~VV~Kps~~~p~~~~~l~~~~~~ag~p~g~~~ 184 (456)
T cd07145 152 NSVVVKPSSNTPLTAIELAKILEEAGLPPGVIN 184 (456)
T ss_pred CEEEEECCccchHHHHHHHHHHHHcCCCcccEE
Confidence 467888888776654 589999999999975
No 64
>cd01420 MoaC_PE MoaC family, prokaryotic and eukaryotic. Members of this family are involved in molybdenum cofactor (Moco) biosynthesis, an essential cofactor of a diverse group of redox enzymes. MoaC, a small hexameric protein, converts, together with MoaA, a guanosine derivative to the precursor Z by inserting the carbon-8 of the purine between the 2' and 3' ribose carbon atoms, which is the first of three phases of Moco biosynthesis.
Probab=29.49 E-value=2.2e+02 Score=21.73 Aligned_cols=76 Identities=20% Similarity=0.287 Sum_probs=44.0
Q ss_pred EeccccchhhHHHHHHhCCCCCC-------------------CcCcCCceEEEEEccCCeEEEEeCCeEEEEEeecC--E
Q 032674 10 KKGHEEGMKVASSLLEEFGLPLG-------------------LLPLADVIEVGFVQTTGYMWILQKKKVEHSFKMVK--K 68 (136)
Q Consensus 10 ~~g~~~~~~ta~elL~~~glP~G-------------------LLP~~~V~~y~l~~~tG~f~v~l~~~c~~~f~~~~--~ 68 (136)
..|.-...+.+++++++..+|+| |+|+- ++ +.+ ..|++.|+... .
T Consensus 16 A~g~i~l~~~~~~~i~~~~~~KGdvl~vAriAgI~aaK~T~~LIPlC-------Hp------i~l-~~v~v~~~~~~~~~ 81 (140)
T cd01420 16 AEGRVRMSPETLDLITEGQLPKGDVLAVARIAGIMAAKRTSELIPLC-------HP------LPL-TGVDVDFELDEETS 81 (140)
T ss_pred EEEEEEECHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhhhcccccC-------CC------Ccc-cEEEEEEEEcCCCC
Confidence 44555567899999999999999 44431 00 000 12444444222 2
Q ss_pred EEEEeeEEEEEEecC-ceeeccceEEEEEEee
Q 032674 69 LVSYDTEITGYVNKN-VIKKLKGVKAKELMLW 99 (136)
Q Consensus 69 ~v~Y~~~ItG~i~~g-~i~~L~GVk~K~lf~W 99 (136)
.+.-..+++..=..| -|..|+||++--|=+|
T Consensus 82 ~i~i~~~v~~~~kTGVEMEALtavsva~LTiy 113 (140)
T cd01420 82 GVRIEATVRTTGRTGVEMEALTAVSVAALTIY 113 (140)
T ss_pred EEEEEEEEEEccCCchHHHHHHHHHHHHHHHH
Confidence 344445566655566 6777788776554444
No 65
>PRK13252 betaine aldehyde dehydrogenase; Provisional
Probab=29.36 E-value=51 Score=28.95 Aligned_cols=30 Identities=27% Similarity=0.348 Sum_probs=23.0
Q ss_pred ccEEEeccccchhhH---HHHHHhCCCCCCCcC
Q 032674 6 GGVVKKGHEEGMKVA---SSLLEEFGLPLGLLP 35 (136)
Q Consensus 6 ~ae~~~g~~~~~~ta---~elL~~~glP~GLLP 35 (136)
++.|.++++.+..++ .++|++.|||.|++-
T Consensus 171 N~Vv~Kps~~~p~t~~~l~~~~~~aglP~g~v~ 203 (488)
T PRK13252 171 NAMIFKPSEVTPLTALKLAEIYTEAGLPDGVFN 203 (488)
T ss_pred CeEEEeCCccCcHHHHHHHHHHHHcCcCcccEE
Confidence 456788887765554 488999999999875
No 66
>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.
Probab=29.14 E-value=15 Score=23.98 Aligned_cols=47 Identities=19% Similarity=0.330 Sum_probs=37.4
Q ss_pred EEeccccchhhHHHHHHhCCCCCCCcCcCCceEEEEEccCCeEEEEeCC
Q 032674 9 VKKGHEEGMKVASSLLEEFGLPLGLLPLADVIEVGFVQTTGYMWILQKK 57 (136)
Q Consensus 9 ~~~g~~~~~~ta~elL~~~glP~GLLP~~~V~~y~l~~~tG~f~v~l~~ 57 (136)
.|.|+....|-..++.++||++.-+|= .+|+... +..-|.+.+.++.
T Consensus 8 ~f~g~~~~~piis~l~~~~~v~~nIl~-g~i~~i~-~~~~G~l~l~l~g 54 (76)
T PF09383_consen 8 TFTGNSAQEPIISQLIREFGVDVNILH-GNIEEIQ-GTPFGILILELPG 54 (76)
T ss_dssp EEESCSSSSCHHHHHHHHHT-EEEEEE-EEEEEET-TEEEEEEEEEEES
T ss_pred EEcCCCcCchHHHHHHHHhCCCEEEEE-EEeEEcC-CeeEEEEEEEEEC
Confidence 478888889999999999999999998 6787544 2357888888864
No 67
>TIGR01722 MMSDH methylmalonic acid semialdehyde dehydrogenase. In Bacillus, a highly homologous protein to methylmalonic acid semialdehyde dehydrogenase, groups out from the main MMSDH clade with Listeria and Sulfolobus. This Bacillus protein has been suggested to be located in an iol operon and/or involved in myo-inositol catabolism, converting malonic semialdehyde to acetyl CoA ad CO2. The preceeding enzymes responsible for valine catabolism are present in Bacillus, Listeria, and Sulfolobus.
Probab=29.05 E-value=53 Score=28.78 Aligned_cols=31 Identities=32% Similarity=0.377 Sum_probs=24.0
Q ss_pred ccEEEeccccchhhH---HHHHHhCCCCCCCcCc
Q 032674 6 GGVVKKGHEEGMKVA---SSLLEEFGLPLGLLPL 36 (136)
Q Consensus 6 ~ae~~~g~~~~~~ta---~elL~~~glP~GLLP~ 36 (136)
++.|.++++....++ .++|++.|||.|++-+
T Consensus 165 N~VilKps~~~p~~~~~l~~~l~~aglP~g~~~~ 198 (477)
T TIGR01722 165 NTFVLKPSEKVPSAAVKLAELFSEAGAPDGVLNV 198 (477)
T ss_pred CEEEeeCcccChHHHHHHHHHHHHhCcCCCeEEE
Confidence 456788887765554 5899999999999863
No 68
>cd07152 ALDH_BenzADH NAD-dependent benzaldehyde dehydrogenase II-like. NAD-dependent, benzaldehyde dehydrogenase II (XylC, BenzADH, EC=1.2.1.28) is involved in the oxidation of benzyl alcohol to benzoate. In Acinetobacter calcoaceticus, this process is carried out by the chromosomally encoded, benzyl alcohol dehydrogenase (xylB) and benzaldehyde dehydrogenase II (xylC) enzymes; whereas in Pseudomonas putida they are encoded by TOL plasmids.
Probab=29.05 E-value=53 Score=28.30 Aligned_cols=31 Identities=35% Similarity=0.471 Sum_probs=23.4
Q ss_pred ccEEEeccccchhhH----HHHHHhCCCCCCCcCc
Q 032674 6 GGVVKKGHEEGMKVA----SSLLEEFGLPLGLLPL 36 (136)
Q Consensus 6 ~ae~~~g~~~~~~ta----~elL~~~glP~GLLP~ 36 (136)
++.|++.++.+..++ .++|++.|||.|++-+
T Consensus 139 N~VvlKps~~~p~~~~~~l~~~~~~ag~P~gvv~~ 173 (443)
T cd07152 139 NAVVLKPDPRTPVSGGVVIARLFEEAGLPAGVLHV 173 (443)
T ss_pred CEEEEECCcccchhHHHHHHHHHHHhCcCcCcEEE
Confidence 457788887665443 4899999999999863
No 69
>PRK09847 gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase; Provisional
Probab=29.02 E-value=55 Score=28.97 Aligned_cols=30 Identities=33% Similarity=0.419 Sum_probs=23.1
Q ss_pred ccEEEeccccchhh---HHHHHHhCCCCCCCcC
Q 032674 6 GGVVKKGHEEGMKV---ASSLLEEFGLPLGLLP 35 (136)
Q Consensus 6 ~ae~~~g~~~~~~t---a~elL~~~glP~GLLP 35 (136)
++.|.++++.+..+ ..++|++.|||.|++=
T Consensus 186 N~VvlKps~~~p~~~~~l~~~~~~aGlP~g~v~ 218 (494)
T PRK09847 186 NSVILKPSEKSPLSAIRLAGLAKEAGLPDGVLN 218 (494)
T ss_pred CEEEEeCCCCChHHHHHHHHHHHHcCcCcCcEE
Confidence 46788888766555 4588999999999875
No 70
>TIGR01804 BADH glycine betaine aldehyde dehydrogenase. Betaine aldehyde dehydrogenase is a member of the aldehyde dehydrogenase family (pfam00171).
Probab=28.76 E-value=54 Score=28.54 Aligned_cols=30 Identities=37% Similarity=0.428 Sum_probs=22.9
Q ss_pred ccEEEeccccchhhH---HHHHHhCCCCCCCcC
Q 032674 6 GGVVKKGHEEGMKVA---SSLLEEFGLPLGLLP 35 (136)
Q Consensus 6 ~ae~~~g~~~~~~ta---~elL~~~glP~GLLP 35 (136)
++.|++.++.+..++ .++|++.|||.|++=
T Consensus 162 N~VvlKps~~tp~~~~~l~~~~~~aglP~gv~~ 194 (467)
T TIGR01804 162 NAMVFKPSEITPLTALKVAELMEEAGLPDGVFN 194 (467)
T ss_pred CEEEeeCCccCcHHHHHHHHHHHHcCcCcCcEE
Confidence 457778887765544 489999999999875
No 71
>PRK13491 chemoreceptor glutamine deamidase CheD; Provisional
Probab=28.69 E-value=1.1e+02 Score=24.62 Aligned_cols=35 Identities=20% Similarity=0.207 Sum_probs=26.9
Q ss_pred hhHHHHHHhCCCCC------CCcCcCCceEEEEEccCCeEEEEeC
Q 032674 18 KVASSLLEEFGLPL------GLLPLADVIEVGFVQTTGYMWILQK 56 (136)
Q Consensus 18 ~ta~elL~~~glP~------GLLP~~~V~~y~l~~~tG~f~v~l~ 56 (136)
+.|.++|+++|+|. |-.+ ..| .|+..||.+|++.-
T Consensus 118 e~a~~~L~~~GI~ivaeDvGG~~g-RkI---~f~~~tG~v~vk~~ 158 (199)
T PRK13491 118 AFARRYLRDEGIRCTAHSLGGNRA-RRI---RFWPKTGRVQQMFL 158 (199)
T ss_pred HHHHHHHHHcCCcEEEEeCCCCCC-cEE---EEECCCCEEEEEEc
Confidence 46889999999994 6666 334 47788999999754
No 72
>TIGR01236 D1pyr5carbox1 delta-1-pyrroline-5-carboxylate dehydrogenase, group 1. This model represents one of two related branches of delta-1-pyrroline-5-carboxylate dehydrogenase. The two branches are not as closely related to each other as some aldehyde dehydrogenases are to this branch, and separate models are built for this reason. The enzyme is the second of two in the degradation of proline to glutamate.
Probab=28.42 E-value=57 Score=29.34 Aligned_cols=30 Identities=30% Similarity=0.386 Sum_probs=22.9
Q ss_pred ccEEEeccccchhh---HHHHHHhCCCCCCCcC
Q 032674 6 GGVVKKGHEEGMKV---ASSLLEEFGLPLGLLP 35 (136)
Q Consensus 6 ~ae~~~g~~~~~~t---a~elL~~~glP~GLLP 35 (136)
++.|++.++.+..+ ..++|++.|||.|+|=
T Consensus 198 N~VVlKPs~~tp~~~~~l~~~~~~aGlP~gvv~ 230 (533)
T TIGR01236 198 NTVIWKPSITATLSNYLTMRILEEAGLPPGVIN 230 (533)
T ss_pred CeEEEECCCcCCHHHHHHHHHHHhcCCCCCcEE
Confidence 45777888765444 4588999999999985
No 73
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=28.41 E-value=63 Score=21.98 Aligned_cols=31 Identities=16% Similarity=0.394 Sum_probs=25.1
Q ss_pred hhHHHHHHhCCCCCCCcCcCCceEEEEEccCC
Q 032674 18 KVASSLLEEFGLPLGLLPLADVIEVGFVQTTG 49 (136)
Q Consensus 18 ~ta~elL~~~glP~GLLP~~~V~~y~l~~~tG 49 (136)
.++.+.|++||.|.=.+| .|+-+.++.-.+-
T Consensus 19 rk~L~I~E~~~is~Eh~P-SGID~~Siii~~~ 49 (76)
T cd04911 19 RKLLSILEDNGISYEHMP-SGIDDISIIIRDN 49 (76)
T ss_pred HHHHHHHHHcCCCEeeec-CCCccEEEEEEcc
Confidence 578899999999999999 6888777663333
No 74
>cd07139 ALDH_AldA-Rv0768 Mycobacterium tuberculosis aldehyde dehydrogenase AldA-like. The Mycobacterium tuberculosis NAD+-dependent, aldehyde dehydrogenase PDB structure, 3B4W, and the Mycobacterium tuberculosis H37Rv aldehyde dehydrogenase AldA (locus Rv0768) sequence, as well as the Rhodococcus rhodochrous ALDH involved in haloalkane catabolism, and other similar sequences, are included in this CD.
Probab=28.22 E-value=59 Score=28.26 Aligned_cols=30 Identities=33% Similarity=0.284 Sum_probs=22.8
Q ss_pred ccEEEeccccchhh---HHHHHHhCCCCCCCcC
Q 032674 6 GGVVKKGHEEGMKV---ASSLLEEFGLPLGLLP 35 (136)
Q Consensus 6 ~ae~~~g~~~~~~t---a~elL~~~glP~GLLP 35 (136)
++.|++.++.+..+ ..++|++.|||.|++=
T Consensus 166 N~VvlKps~~~p~~~~~l~~~~~~aglP~gv~~ 198 (471)
T cd07139 166 CTVVLKPSPETPLDAYLLAEAAEEAGLPPGVVN 198 (471)
T ss_pred CEEEEECCCcCCHHHHHHHHHHHHcCCCCCcEE
Confidence 45677777766554 4589999999999885
No 75
>cd00528 MoaC MoaC family. Members of this family are involved in molybdenum cofactor (Moco) biosynthesis, an essential cofactor of a diverse group of redox enzymes. MoaC, a small hexameric protein, converts, together with MoaA, a guanosine derivative to the precursor Z by inserting the carbon-8 of the purine between the 2' and 3' ribose carbon atoms, which is the first of three phases of Moco biosynthesis.
Probab=28.18 E-value=2.3e+02 Score=21.49 Aligned_cols=23 Identities=26% Similarity=0.261 Sum_probs=18.9
Q ss_pred EeccccchhhHHHHHHhCCCCCC
Q 032674 10 KKGHEEGMKVASSLLEEFGLPLG 32 (136)
Q Consensus 10 ~~g~~~~~~ta~elL~~~glP~G 32 (136)
..|.-...+.+++++++..+|+|
T Consensus 16 A~g~i~l~~~~~~~i~~~~~~KG 38 (136)
T cd00528 16 AEGRVRLSPETLDLIREGQLPKG 38 (136)
T ss_pred EEEEEEECHHHHHHHHhCCCCCc
Confidence 44555567889999999999999
No 76
>cd07146 ALDH_PhpJ Streptomyces putative phosphonoformaldehyde dehydrogenase PhpJ-like. Putative phosphonoformaldehyde dehydrogenase (PhpJ), an aldehyde dehydrogenase homolog reportedly involved in the biosynthesis of phosphinothricin tripeptides in Streptomyces viridochromogenes DSM 40736, and similar sequences are included in this CD.
Probab=27.98 E-value=61 Score=28.20 Aligned_cols=30 Identities=33% Similarity=0.373 Sum_probs=23.0
Q ss_pred ccEEEeccccchh---hHHHHHHhCCCCCCCcC
Q 032674 6 GGVVKKGHEEGMK---VASSLLEEFGLPLGLLP 35 (136)
Q Consensus 6 ~ae~~~g~~~~~~---ta~elL~~~glP~GLLP 35 (136)
++.|++.++.+.. ...++|++.|||.|++=
T Consensus 149 N~VilKps~~~p~~~~~l~~~l~~aglP~g~v~ 181 (451)
T cd07146 149 NRIVLKPSEKTPLSAIYLADLLYEAGLPPDMLS 181 (451)
T ss_pred CEEEEECCCCchHHHHHHHHHHHHcCcCccceE
Confidence 4578888877544 45588999999999886
No 77
>TIGR03250 PhnAcAld_DH putative phosphonoacetaldehyde dehydrogenase. It seems reasonably certain then, that this enzyme catalyzes the NAD-dependent oxidation of phosphonoacetaldehyde to phosphonoacetate, bridging the metabolic gap between PhnW and PhnA. We propose the name phosphonoacetaldehyde dehydrogenase and the gene symbol PhnY for this enzyme.
Probab=27.94 E-value=60 Score=28.49 Aligned_cols=31 Identities=29% Similarity=0.339 Sum_probs=23.4
Q ss_pred ccEEEeccccchhh---HHHHHHhCCCCCCCcCc
Q 032674 6 GGVVKKGHEEGMKV---ASSLLEEFGLPLGLLPL 36 (136)
Q Consensus 6 ~ae~~~g~~~~~~t---a~elL~~~glP~GLLP~ 36 (136)
++.|.+.++.+..+ ..++|++.|||.|++=+
T Consensus 168 N~VvlKps~~~p~~~~~l~~~~~~aGlP~gvv~~ 201 (472)
T TIGR03250 168 NRMVVKPSEKTPLSALYLADILYEAGLPPQMLQV 201 (472)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHcCCCcccEEE
Confidence 46778888766544 45899999999998863
No 78
>cd07125 ALDH_PutA-P5CDH Delta(1)-pyrroline-5-carboxylate dehydrogenase, PutA. The proline catabolic enzymes of the aldehyde dehydrogenase (ALDH) protein superfamily, proline dehydrogenase and Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH, (EC=1.5.1.12 )), catalyze the two-step oxidation of proline to glutamate; P5CDH catalyzes the oxidation of glutamate semialdehyde, utilizing NAD+ as the electron acceptor. In some bacteria, the two enzymes are fused into the bifunctional flavoenzyme, proline utilization A (PutA) These enzymes play important roles in cellular redox control, superoxide generation, and apoptosis. In certain prokaryotes such as Escherichia coli, PutA is also a transcriptional repressor of the proline utilization genes.
Probab=27.87 E-value=59 Score=28.94 Aligned_cols=30 Identities=33% Similarity=0.443 Sum_probs=23.1
Q ss_pred ccEEEeccccchhh---HHHHHHhCCCCCCCcC
Q 032674 6 GGVVKKGHEEGMKV---ASSLLEEFGLPLGLLP 35 (136)
Q Consensus 6 ~ae~~~g~~~~~~t---a~elL~~~glP~GLLP 35 (136)
++.|.+.++.+..+ ..++|.+.|||.|++=
T Consensus 196 N~VVlKps~~tp~~~~~l~~ll~eaGlP~gvv~ 228 (518)
T cd07125 196 NTVIAKPAEQTPLIAARAVELLHEAGVPRDVLQ 228 (518)
T ss_pred CEEEEeCCCcCcHHHHHHHHHHHHcCCCCCcEE
Confidence 45778888776544 4589999999999875
No 79
>cd07085 ALDH_F6_MMSDH Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2. Methylmalonate semialdehyde dehydrogenase (MMSDH, EC=1.2.1.27) [acylating] from Bacillus subtilis is involved in valine metabolism and catalyses the NAD+- and CoA-dependent oxidation of methylmalonate semialdehyde into propionyl-CoA. Mitochondrial human MMSDH ALDH6A1 and Arabidopsis MMSDH ALDH6B2 are also present in this CD.
Probab=27.76 E-value=60 Score=28.37 Aligned_cols=31 Identities=35% Similarity=0.410 Sum_probs=23.8
Q ss_pred ccEEEeccccchhh---HHHHHHhCCCCCCCcCc
Q 032674 6 GGVVKKGHEEGMKV---ASSLLEEFGLPLGLLPL 36 (136)
Q Consensus 6 ~ae~~~g~~~~~~t---a~elL~~~glP~GLLP~ 36 (136)
++.|.+.++.+..+ ..++|++.|||.|++-+
T Consensus 165 N~VvlKps~~tp~~~~~l~~~l~~aGlP~gvv~~ 198 (478)
T cd07085 165 NTFVLKPSERVPGAAMRLAELLQEAGLPDGVLNV 198 (478)
T ss_pred CEEEEECCCcCcHHHHHHHHHHHHhCCCCCcEEE
Confidence 45678888875544 45899999999999874
No 80
>PRK03137 1-pyrroline-5-carboxylate dehydrogenase; Provisional
Probab=27.57 E-value=59 Score=28.90 Aligned_cols=30 Identities=30% Similarity=0.422 Sum_probs=22.4
Q ss_pred ccEEEeccccchhh---HHHHHHhCCCCCCCcC
Q 032674 6 GGVVKKGHEEGMKV---ASSLLEEFGLPLGLLP 35 (136)
Q Consensus 6 ~ae~~~g~~~~~~t---a~elL~~~glP~GLLP 35 (136)
++.|.+.++.+..+ ..++|++.|||.|++=
T Consensus 200 N~VVlKPs~~tp~~a~~l~~~l~~aGlP~gvv~ 232 (514)
T PRK03137 200 NTVLLKPASDTPVIAAKFVEVLEEAGLPAGVVN 232 (514)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHhCCCCCcEE
Confidence 45677777665444 4589999999999875
No 81
>cd07149 ALDH_y4uC Uncharacterized ALDH (y4uC) with similarity to Tortula ruralis aldehyde dehydrogenase ALDH21A1. Uncharacterized aldehyde dehydrogenase (ORF name y4uC) with sequence similarity to the moss Tortula ruralis aldehyde dehydrogenase ALDH21A1 (RNP123) believed to play an important role in the detoxification of aldehydes generated in response to desiccation- and salinity-stress, and similar sequences are included in this CD.
Probab=27.56 E-value=62 Score=27.77 Aligned_cols=31 Identities=35% Similarity=0.374 Sum_probs=23.5
Q ss_pred ccEEEeccccchhh---HHHHHHhCCCCCCCcCc
Q 032674 6 GGVVKKGHEEGMKV---ASSLLEEFGLPLGLLPL 36 (136)
Q Consensus 6 ~ae~~~g~~~~~~t---a~elL~~~glP~GLLP~ 36 (136)
++.|.+.++.+..+ ..++|.+.|||.|++-+
T Consensus 152 N~VI~Kps~~~p~~~~~l~~~l~~ag~P~gvv~~ 185 (453)
T cd07149 152 NAVVLKPASQTPLSALKLAELLLEAGLPKGALNV 185 (453)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHcCcCccceEE
Confidence 45778888765544 45899999999998873
No 82
>cd07095 ALDH_SGSD_AstD N-succinylglutamate 5-semialdehyde dehydrogenase, AstD-like. N-succinylglutamate 5-semialdehyde dehydrogenase or succinylglutamic semialdehyde dehydrogenase (SGSD, E. coli AstD, EC=1.2.1.71) involved in L-arginine degradation via the arginine succinyltransferase (AST) pathway and catalyzes the NAD+-dependent reduction of succinylglutamate semialdehyde into succinylglutamate.
Probab=27.51 E-value=49 Score=28.64 Aligned_cols=54 Identities=35% Similarity=0.286 Sum_probs=33.7
Q ss_pred ccEEEeccccchhhH---HHHHHhCCCCCCCcCcCCceEEEEEccCCeEEEEeCCeEEEEEe
Q 032674 6 GGVVKKGHEEGMKVA---SSLLEEFGLPLGLLPLADVIEVGFVQTTGYMWILQKKKVEHSFK 64 (136)
Q Consensus 6 ~ae~~~g~~~~~~ta---~elL~~~glP~GLLP~~~V~~y~l~~~tG~f~v~l~~~c~~~f~ 64 (136)
++.|.+.++.+..++ .++|.+.|||.|++-+ |.+ +.+.|...+..+.---+.|.
T Consensus 126 N~VI~Kps~~~~~~~~~l~~~~~~ag~P~g~~~~--v~g---~~~~~~~l~~~~~v~~v~ft 182 (431)
T cd07095 126 NTVVFKPSELTPAVAELMVELWEEAGLPPGVLNL--VQG---GRETGEALAAHEGIDGLLFT 182 (431)
T ss_pred CEEEeeCCCCCcHHHHHHHHHHHHhCcChhHheE--EeC---cHHHHHHHhcCCCCCEEEEE
Confidence 467788887766554 4889999999999873 543 22345544444433234454
No 83
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=27.44 E-value=52 Score=28.37 Aligned_cols=32 Identities=25% Similarity=0.318 Sum_probs=28.1
Q ss_pred cccccEEEeccccchhhHHHHHHhCCCCCCCc
Q 032674 3 EKEGGVVKKGHEEGMKVASSLLEEFGLPLGLL 34 (136)
Q Consensus 3 ~~~~ae~~~g~~~~~~ta~elL~~~glP~GLL 34 (136)
-|.|.||..=...-.+++.+.|++.|||.|=-
T Consensus 66 ~rqg~ei~~i~~e~~~~v~~~L~~iG~~~G~~ 97 (317)
T COG2221 66 SRQGLEIPGISPEDADDVVEELREIGLPVGST 97 (317)
T ss_pred ecCceEeccCCHHHHHHHHHHHHHcCCCCCCc
Confidence 47788998888888999999999999999865
No 84
>cd07103 ALDH_F5_SSADH_GabD Mitochondrial succinate-semialdehyde dehydrogenase and ALDH family members 5A1 and 5F1-like. Succinate-semialdehyde dehydrogenase, mitochondrial (SSADH, GabD, EC=1.2.1.24) catalyzes the NAD+-dependent oxidation of succinate semialdehyde (SSA) to succinate. This group includes the human aldehyde dehydrogenase family 5 member A1 (ALDH5A1) which is a mitochondrial homotetramer that converts SSA to succinate in the last step of 4-aminobutyric acid (GABA) catabolism. This CD also includes the Arabidopsis SSADH gene product ALDH5F1. Mutations in this gene result in the accumulation of H2O2, suggesting a role in plant defense against the environmental stress of elevated reactive oxygen species.
Probab=27.34 E-value=60 Score=27.90 Aligned_cols=30 Identities=43% Similarity=0.450 Sum_probs=23.1
Q ss_pred ccEEEeccccchh---hHHHHHHhCCCCCCCcC
Q 032674 6 GGVVKKGHEEGMK---VASSLLEEFGLPLGLLP 35 (136)
Q Consensus 6 ~ae~~~g~~~~~~---ta~elL~~~glP~GLLP 35 (136)
++.|.+.++.+.. ...++|++.|||.|++-
T Consensus 146 N~VIlKps~~~~~~~~~l~~~l~~aglP~g~v~ 178 (451)
T cd07103 146 CTVVLKPAEETPLSALALAELAEEAGLPAGVLN 178 (451)
T ss_pred CEEEEECCccCcHHHHHHHHHHHHcCCCcccEE
Confidence 3677888876544 45699999999999875
No 85
>PLN02315 aldehyde dehydrogenase family 7 member
Probab=27.29 E-value=60 Score=29.02 Aligned_cols=30 Identities=27% Similarity=0.335 Sum_probs=23.6
Q ss_pred ccEEEeccccchhhH-------HHHHHhCCCCCCCcC
Q 032674 6 GGVVKKGHEEGMKVA-------SSLLEEFGLPLGLLP 35 (136)
Q Consensus 6 ~ae~~~g~~~~~~ta-------~elL~~~glP~GLLP 35 (136)
++.|++.++.+..++ .++|++.|||.|++-
T Consensus 183 N~VVlKPs~~tp~~~~~~~~l~~~~~~~aGlP~gvv~ 219 (508)
T PLN02315 183 NCVVWKGAPTTPLITIAMTKLVAEVLEKNNLPGAIFT 219 (508)
T ss_pred CEEEeeCCCcChHHHHHHHHHHHHHHHHcCCCcccEE
Confidence 467888888766553 577899999999985
No 86
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=27.13 E-value=55 Score=20.16 Aligned_cols=15 Identities=33% Similarity=0.647 Sum_probs=12.2
Q ss_pred hhHHHHHHhCCCCCC
Q 032674 18 KVASSLLEEFGLPLG 32 (136)
Q Consensus 18 ~ta~elL~~~glP~G 32 (136)
..-.+.|.+||+|.|
T Consensus 9 ~eL~~~L~~~G~~~g 23 (44)
T smart00540 9 AELRAELKQYGLPPG 23 (44)
T ss_pred HHHHHHHHHcCCCCC
Confidence 345678999999997
No 87
>cd07123 ALDH_F4-17_P5CDH Delta(1)-pyrroline-5-carboxylate dehydrogenase, ALDH families 4 and 17. Delta(1)-pyrroline-5-carboxylate dehydrogenase (EC=1.5.1.12 ), families 4 and 17: a proline catabolic enzyme of the aldehyde dehydrogenase (ALDH) protein superfamily. Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH), also known as ALDH4A1 in humans, is a mitochondrial homodimer involved in proline degradation and catalyzes the NAD + -dependent conversion of P5C to glutamate. This is a necessary step in the pathway interconnecting the urea and tricarboxylic acid cycles. The preferred substrate is glutamic gamma-semialdehyde, other substrates include succinic, glutaric and adipic semialdehydes. Also included in this CD is the Aldh17 Drosophila melanogaster (Q9VUC0) P5CDH and similar sequences.
Probab=27.12 E-value=63 Score=28.85 Aligned_cols=31 Identities=29% Similarity=0.427 Sum_probs=23.9
Q ss_pred ccEEEeccccchhhH---HHHHHhCCCCCCCcCc
Q 032674 6 GGVVKKGHEEGMKVA---SSLLEEFGLPLGLLPL 36 (136)
Q Consensus 6 ~ae~~~g~~~~~~ta---~elL~~~glP~GLLP~ 36 (136)
++.|++.++.+.-++ .++|++.|||.|++-+
T Consensus 198 N~VVlKPs~~tp~~~~~l~~~l~~aGlP~gvv~v 231 (522)
T cd07123 198 NVVLWKPSDTAVLSNYLVYKILEEAGLPPGVINF 231 (522)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHcCcCCCcEEE
Confidence 466778888765554 4889999999999873
No 88
>PRK11241 gabD succinate-semialdehyde dehydrogenase I; Provisional
Probab=27.03 E-value=63 Score=28.59 Aligned_cols=30 Identities=23% Similarity=0.245 Sum_probs=23.8
Q ss_pred ccEEEeccccchhhH---HHHHHhCCCCCCCcC
Q 032674 6 GGVVKKGHEEGMKVA---SSLLEEFGLPLGLLP 35 (136)
Q Consensus 6 ~ae~~~g~~~~~~ta---~elL~~~glP~GLLP 35 (136)
++.|.+.++.+..++ .+++++.|||.|++=
T Consensus 175 N~VVlKPs~~tp~~~~~l~~~~~~aglP~gvv~ 207 (482)
T PRK11241 175 CTMVLKPASQTPFSALALAELAIRAGIPAGVFN 207 (482)
T ss_pred CEEEEECCCCChHHHHHHHHHHHHcCCCcccEE
Confidence 467888888776665 488999999999886
No 89
>PRK13494 chemoreceptor glutamine deamidase CheD; Provisional
Probab=26.65 E-value=1.4e+02 Score=23.10 Aligned_cols=36 Identities=11% Similarity=0.166 Sum_probs=27.0
Q ss_pred hhHHHHHHhCCCCC------CCcCcCCceEEEEEccCCeEEEEeCC
Q 032674 18 KVASSLLEEFGLPL------GLLPLADVIEVGFVQTTGYMWILQKK 57 (136)
Q Consensus 18 ~ta~elL~~~glP~------GLLP~~~V~~y~l~~~tG~f~v~l~~ 57 (136)
+.|.++|+++|+|. |--+ ..| .++.+||.+||+...
T Consensus 117 ~~a~~~L~~~gI~i~a~DvGG~~g-R~i---~f~~~tG~v~vk~~~ 158 (163)
T PRK13494 117 EFAVNTLNKYGIPILAKDFDQSKS-RKI---FVFPENFKVIVEYPD 158 (163)
T ss_pred HHHHHHHHHcCCcEEEEeCCCCCC-cEE---EEECCCCEEEEEECC
Confidence 46889999999994 5555 234 477889999998653
No 90
>PLN02278 succinic semialdehyde dehydrogenase
Probab=25.08 E-value=71 Score=28.31 Aligned_cols=30 Identities=33% Similarity=0.311 Sum_probs=23.4
Q ss_pred ccEEEeccccchhhH---HHHHHhCCCCCCCcC
Q 032674 6 GGVVKKGHEEGMKVA---SSLLEEFGLPLGLLP 35 (136)
Q Consensus 6 ~ae~~~g~~~~~~ta---~elL~~~glP~GLLP 35 (136)
++.|++.++.+..++ .++|.+.|||.|++=
T Consensus 189 N~VVlKps~~tp~~~~~l~~~l~eaglP~gvv~ 221 (498)
T PLN02278 189 CTVVVKPSELTPLTALAAAELALQAGIPPGVLN 221 (498)
T ss_pred CEEEEECCCCChHHHHHHHHHHHHcCCCcccEE
Confidence 467788888775554 488999999999885
No 91
>cd07114 ALDH_DhaS Uncharacterized Candidatus pelagibacter aldehyde dehydrogenase, DhaS-like. Uncharacterized aldehyde dehydrogenase from Candidatus pelagibacter (DhaS) and other related sequences are present in this CD.
Probab=25.06 E-value=72 Score=27.63 Aligned_cols=30 Identities=33% Similarity=0.394 Sum_probs=22.2
Q ss_pred ccEEEeccccchhh---HHHHHHhCCCCCCCcC
Q 032674 6 GGVVKKGHEEGMKV---ASSLLEEFGLPLGLLP 35 (136)
Q Consensus 6 ~ae~~~g~~~~~~t---a~elL~~~glP~GLLP 35 (136)
++.|.+.++.+..+ ..++|++.|||.|++=
T Consensus 148 N~Vilkps~~~p~~~~~l~~~l~~aglP~~vv~ 180 (457)
T cd07114 148 NTVVLKPSEHTPASTLELAKLAEEAGFPPGVVN 180 (457)
T ss_pred CeEEeECCccchHHHHHHHHHHHHcCcCCCcEE
Confidence 45677777765444 4699999999999664
No 92
>cd01215 Dab Disabled (Dab) Phosphotyrosine-binding domain. Disabled (Dab) Phosphotyrosine-binding domain. Dab is a cystosolic adaptor protein, which binds to the cytoplasmic tails of lipoprotein receptors, such as ApoER2 and VLDLR, via its PTB domain. The dab PTB domain has a preference for unphosphorylated tyrosine within an NPxY motif. Additionally, the Dab PTB domain, which is structurally similar to PH domains, binds to phosphatidlyinositol phosphate 4,5 bisphosphate in a manner characteristic of phosphoinositide binding PH domains.
Probab=24.97 E-value=1.9e+02 Score=21.97 Aligned_cols=31 Identities=26% Similarity=0.326 Sum_probs=25.1
Q ss_pred cceEEEEEEeecceeEEEEcCCCCCeEEEEe
Q 032674 89 KGVKAKELMLWPPVSEIKVDDPPTGKIHFKS 119 (136)
Q Consensus 89 ~GVk~K~lf~W~~I~eI~vd~~~~~~I~F~~ 119 (136)
+|-+-+...+|+++.+|.+-++.++.|..+-
T Consensus 48 ~~~kk~kV~L~IS~dGi~v~D~~T~~ll~~~ 78 (139)
T cd01215 48 AGAHKTRITLQINIDGIKVLDEKTGAVLHHH 78 (139)
T ss_pred hccccceEEEEEccCCEEEEcCCCCcEEEee
Confidence 5567777889999999999888777777664
No 93
>TIGR02518 EutH_ACDH acetaldehyde dehydrogenase (acetylating).
Probab=24.84 E-value=70 Score=28.46 Aligned_cols=30 Identities=27% Similarity=0.314 Sum_probs=24.0
Q ss_pred ccEEEeccccchhhHH-------HHHHhCCCCCCCcC
Q 032674 6 GGVVKKGHEEGMKVAS-------SLLEEFGLPLGLLP 35 (136)
Q Consensus 6 ~ae~~~g~~~~~~ta~-------elL~~~glP~GLLP 35 (136)
++.|+++++.+..++. ++|++.|||.|++=
T Consensus 133 NaVIlKps~~a~~s~~~~~~~l~~~l~eaGlP~gvv~ 169 (488)
T TIGR02518 133 NAIVFSPHPNAKKCIIETVKLMRKAAEEAGAPEGAIG 169 (488)
T ss_pred CcEEEECCccchHHHHHHHHHHHHHHHHcCcCcccEE
Confidence 5789999998877654 44589999999986
No 94
>PF10979 DUF2786: Protein of unknown function (DUF2786); InterPro: IPR024498 This domain is found in proteins that have no known function.
Probab=24.66 E-value=44 Score=20.31 Aligned_cols=17 Identities=24% Similarity=0.569 Sum_probs=14.1
Q ss_pred ccchhhHHHHHHhCCCC
Q 032674 14 EEGMKVASSLLEEFGLP 30 (136)
Q Consensus 14 ~~~~~ta~elL~~~glP 30 (136)
+.+..+|.+|+.+||+-
T Consensus 25 ~~A~~kAq~Lm~ky~i~ 41 (43)
T PF10979_consen 25 EAALAKAQRLMAKYGID 41 (43)
T ss_pred HHHHHHHHHHHHHhCCc
Confidence 45778999999999974
No 95
>cd07089 ALDH_CddD-AldA-like Rhodococcus ruber 6-oxolauric acid dehydrogenase-like and related proteins. The 6-oxolauric acid dehydrogenase (CddD) from Rhodococcus ruber SC1 which converts 6-oxolauric acid to dodecanedioic acid; and the aldehyde dehydrogenase (locus SSP0762) from Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 and also, the Mycobacterium tuberculosis H37Rv ALDH AldA (locus Rv0768) sequence; and other similar sequences, are included in this CD.
Probab=24.40 E-value=77 Score=27.59 Aligned_cols=30 Identities=23% Similarity=0.297 Sum_probs=22.5
Q ss_pred ccEEEeccccchhh---HHHHHHhCCCCCCCcC
Q 032674 6 GGVVKKGHEEGMKV---ASSLLEEFGLPLGLLP 35 (136)
Q Consensus 6 ~ae~~~g~~~~~~t---a~elL~~~glP~GLLP 35 (136)
++.|.+.++.+..+ ..++|++.|||.|++=
T Consensus 152 N~vvlKps~~~p~~~~~l~~~~~~aglP~g~~~ 184 (459)
T cd07089 152 NTVVLKPAPDTPLSALLLGEIIAETDLPAGVVN 184 (459)
T ss_pred CEEEEECCCCChHHHHHHHHHHHHcCCCccceE
Confidence 35677777765444 4699999999999876
No 96
>TIGR00581 moaC molybdenum cofactor biosynthesis protein MoaC. MoaC catalyzes an early step in molybdenum cofactor biosynthesis in E. coli. The Arabidopsis homolog Cnx3 complements MoaC deficiency in E. coli (MUID:95197640). Eukarotic members of this family branch within the bacterial branch, with the archaeal members as an apparent outgroup. This protein is absent in a number of the pathogens with smaller genomes, including Mycoplasmas, Chlamydias, and spirochetes, but is found in most other complete genomes to date. The homolog form Synechocystis sp. is fused to a MobA-homologous region and is an outlier to all other bacterial forms by both neighbor-joining and UPGMA analyses. Members of this family are well-conserved. The seed for this model excludes both archaeal sequences and the most divergent bacterial sequences, but still finds all candidate MoaC sequences easily between trusted and noise cutoffs. We suggest that sequences branching outside the set that contains all seed members
Probab=24.40 E-value=36 Score=26.17 Aligned_cols=76 Identities=18% Similarity=0.258 Sum_probs=43.7
Q ss_pred EeccccchhhHHHHHHhCCCCCC-------------------CcCcCCceEEEEEccCCeEEEEeCCeEEEEEeecCEEE
Q 032674 10 KKGHEEGMKVASSLLEEFGLPLG-------------------LLPLADVIEVGFVQTTGYMWILQKKKVEHSFKMVKKLV 70 (136)
Q Consensus 10 ~~g~~~~~~ta~elL~~~glP~G-------------------LLP~~~V~~y~l~~~tG~f~v~l~~~c~~~f~~~~~~v 70 (136)
..|.-...+.++++|++..+|+| |+|+= ++ +.+ ..|++.|+..+..+
T Consensus 27 A~g~I~l~~~~~~~i~~~~~~KGdvl~~AriAgi~aaK~T~~lIPlC-------Hp------i~l-~~v~v~~~~~~~~i 92 (147)
T TIGR00581 27 ASGFVRMKPETVKMISEGRVPKGDVIATARIAGIMAAKRTGDLIPLC-------HP------LPL-SKVEVELTVREDRV 92 (147)
T ss_pred EEEEEEECHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhhhhhcCCC-------CC------ccc-eEEEEEEEEcCCEE
Confidence 34444566788999999999999 55531 00 011 12444444323344
Q ss_pred EEeeEEEEEEecC-ceeeccceEEEEEEee
Q 032674 71 SYDTEITGYVNKN-VIKKLKGVKAKELMLW 99 (136)
Q Consensus 71 ~Y~~~ItG~i~~g-~i~~L~GVk~K~lf~W 99 (136)
.-..+++..=..| -|..|+||++--|=+|
T Consensus 93 ~v~~~v~t~~~TGVEMEALtavsva~LTiy 122 (147)
T TIGR00581 93 EIRATVRTTGRTGVEMEALTAVSVAALTVY 122 (147)
T ss_pred EEEEEEEEecCCCcHHHHHHHHHHHHHHHH
Confidence 4455666555556 5777777776555444
No 97
>cd07130 ALDH_F7_AASADH NAD+-dependent alpha-aminoadipic semialdehyde dehydrogenase, ALDH family members 7A1 and 7B. Alpha-aminoadipic semialdehyde dehydrogenase (AASADH, EC=1.2.1.31), also known as ALDH7A1, Antiquitin-1, ALDH7B, or delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH), is a NAD+-dependent ALDH. Human ALDH7A1 is involved in the pipecolic acid pathway of lysine catabolism, catalyzing the oxidation of alpha-aminoadipic semialdehyde to alpha-aminoadipate. Arabidopsis thaliana ALDH7B4 appears to be an osmotic-stress-inducible ALDH gene encoding a turgor-responsive or stress-inducible ALDH. The Streptomyces clavuligerus P6CDH appears to be involved in cephamycin biosynthesis, catalyzing the second stage of the two-step conversion of lysine to alpha-aminoadipic acid. The ALDH7A1 enzyme and others in this group have been observed as tetramers, yet the bacterial P6CDH enzyme has been reported as a monomer.
Probab=24.04 E-value=77 Score=27.78 Aligned_cols=30 Identities=30% Similarity=0.222 Sum_probs=23.5
Q ss_pred ccEEEeccccchhhHH-------HHHHhCCCCCCCcC
Q 032674 6 GGVVKKGHEEGMKVAS-------SLLEEFGLPLGLLP 35 (136)
Q Consensus 6 ~ae~~~g~~~~~~ta~-------elL~~~glP~GLLP 35 (136)
++.|++.++.+..+++ ++|++.|||.|++=
T Consensus 161 N~VvlKps~~~p~~~~~l~~l~~~~~~~aglP~gv~~ 197 (474)
T cd07130 161 NVVVWKPSPTTPLTAIAVTKIVARVLEKNGLPGAIAS 197 (474)
T ss_pred CeEEeeCCccCHHHHHHHHHHHHHHHHhcCCCCCcEE
Confidence 4678899998877653 34679999999976
No 98
>cd03700 eEF2_snRNP_like_II EF2_snRNP_like_II: this subfamily represents domain II of elongation factor (EF) EF-2 found eukaryotes and archaea and, the C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. This translocation step is catalyzed by EF-2_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p.
Probab=23.91 E-value=2.3e+02 Score=18.94 Aligned_cols=52 Identities=17% Similarity=0.254 Sum_probs=38.5
Q ss_pred CEEEEEeeEEEEEEecCceeecc-------------ceEEEEEEeecceeEEEEcCCCCCeEEEE
Q 032674 67 KKLVSYDTEITGYVNKNVIKKLK-------------GVKAKELMLWPPVSEIKVDDPPTGKIHFK 118 (136)
Q Consensus 67 ~~~v~Y~~~ItG~i~~g~i~~L~-------------GVk~K~lf~W~~I~eI~vd~~~~~~I~F~ 118 (136)
+-++.|-+-.+|.|..|.--... -.+++.+++...-..+.++....|+|.-=
T Consensus 15 ~g~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~a~aGdIv~i 79 (93)
T cd03700 15 GGFIAFGRVFSGTIRKGQKVRVLGPNYSPEDEEDLSKKTIQRLYLMMGRYREPVDEVPAGNIVLI 79 (93)
T ss_pred CEEEEEEEEeeCeEeCCCEEEEECCCCCCCccCcEEEEEEeEEEEEcCCCEEEccccCCCCEEEE
Confidence 35778888888988888544222 26777888888888888888778888763
No 99
>PRK13487 chemoreceptor glutamine deamidase CheD; Provisional
Probab=23.89 E-value=1.5e+02 Score=23.71 Aligned_cols=36 Identities=25% Similarity=0.430 Sum_probs=28.0
Q ss_pred hhHHHHHHhCCCCC------CCcCcCCceEEEEEccCCeEEEEeCC
Q 032674 18 KVASSLLEEFGLPL------GLLPLADVIEVGFVQTTGYMWILQKK 57 (136)
Q Consensus 18 ~ta~elL~~~glP~------GLLP~~~V~~y~l~~~tG~f~v~l~~ 57 (136)
+.|.++|+++|+|. |--+ ..| .|+.+||.+|++...
T Consensus 130 ~~a~~~L~~~gI~iva~DvGG~~g-R~v---~f~~~tG~v~vk~~~ 171 (201)
T PRK13487 130 EFVRDYLQTERIPIVAEDLLDIYP-RKV---YFFPTTGKVLVKKLK 171 (201)
T ss_pred HHHHHHHHHcCCcEEEEECCCCCC-cEE---EEECCCCEEEEEECC
Confidence 46889999999994 6666 334 377899999999664
No 100
>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster. The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.
Probab=23.70 E-value=1.2e+02 Score=21.83 Aligned_cols=37 Identities=14% Similarity=-0.085 Sum_probs=26.3
Q ss_pred chhhHHHHHHhCCCCCCCcCcCCceEEEEEccCCeEEEEeC
Q 032674 16 GMKVASSLLEEFGLPLGLLPLADVIEVGFVQTTGYMWILQK 56 (136)
Q Consensus 16 ~~~ta~elL~~~glP~GLLP~~~V~~y~l~~~tG~f~v~l~ 56 (136)
..+++.++|.....=...+| +++++... + +.+...+.
T Consensus 8 ~~~~vw~~l~D~~~l~~ciP--G~~~~e~~-~-~~~~~~~~ 44 (140)
T PF06240_consen 8 PPEKVWAFLSDPENLARCIP--GVESIEKV-G-DEYKGKVK 44 (140)
T ss_dssp -HHHHHHHHT-HHHHHHHST--TEEEEEEE-C-TEEEEEEE
T ss_pred CHHHHHHHhcCHHHHHhhCC--CcEEeeec-C-cEEEEEEE
Confidence 45678888888877788899 79988876 3 66665544
No 101
>KOG2455 consensus Delta-1-pyrroline-5-carboxylate dehydrogenase [Amino acid transport and metabolism]
Probab=23.61 E-value=48 Score=30.30 Aligned_cols=24 Identities=29% Similarity=0.465 Sum_probs=17.2
Q ss_pred eccccchhh---HHHHHHhCCCCCCCc
Q 032674 11 KGHEEGMKV---ASSLLEEFGLPLGLL 34 (136)
Q Consensus 11 ~g~~~~~~t---a~elL~~~glP~GLL 34 (136)
+....+... .|++|++-|||.|++
T Consensus 230 kPS~ta~lssYii~~il~EAGlP~Gvi 256 (561)
T KOG2455|consen 230 KPSDTAALSSYIIYRILREAGLPPGVI 256 (561)
T ss_pred cccchhHHHHHHHHHHHHHcCCCccce
Confidence 333444444 569999999999986
No 102
>TIGR01237 D1pyr5carbox2 delta-1-pyrroline-5-carboxylate dehydrogenase, group 2, putative. This enzyme is the second of two in the degradation of proline to glutamate. This model represents one of several related branches of delta-1-pyrroline-5-carboxylate dehydrogenase. Members of this branch may be associated with proline dehydrogenase (the other enzyme of the pathway from proline to glutamate) but have not been demonstrated experimentally. The branches are not as closely related to each other as some distinct aldehyde dehydrogenases are to some; separate models were built to let each model describe a set of equivalogs.
Probab=23.56 E-value=78 Score=28.10 Aligned_cols=55 Identities=25% Similarity=0.274 Sum_probs=32.1
Q ss_pred ccEEEeccccchhh---HHHHHHhCCCCCCCcCcCCceEEEEEccCCeEEEEeCCeEEEEEe
Q 032674 6 GGVVKKGHEEGMKV---ASSLLEEFGLPLGLLPLADVIEVGFVQTTGYMWILQKKKVEHSFK 64 (136)
Q Consensus 6 ~ae~~~g~~~~~~t---a~elL~~~glP~GLLP~~~V~~y~l~~~tG~f~v~l~~~c~~~f~ 64 (136)
++.|.+.++.+..+ ..++|++.|||.|++=. |.+. ..+.|...+..+.-.-+.|.
T Consensus 196 N~VVlKPs~~tp~~~~~l~~~~~~aGlP~gvv~v--v~g~--~~~~~~~L~~~~~v~~V~fT 253 (511)
T TIGR01237 196 NCVVLKPAETSTVIAAKIVEILIEAGLPPGVFQF--VPGK--GSEVGSYLVNHPKTHLITFT 253 (511)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHhCCCCCcEEE--ccCC--CchhHHHHhcCCCCCeEEEE
Confidence 45777877765554 44888999999998863 4321 12345444443433334454
No 103
>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain. Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=23.09 E-value=45 Score=24.52 Aligned_cols=20 Identities=20% Similarity=0.255 Sum_probs=14.0
Q ss_pred CCCCCcCcCCceEEEEEccCCe
Q 032674 29 LPLGLLPLADVIEVGFVQTTGY 50 (136)
Q Consensus 29 lP~GLLP~~~V~~y~l~~~tG~ 50 (136)
=|+|+|||+|+.-=.. ++|+
T Consensus 41 E~kyilpLdnLk~Rdv--e~gf 60 (110)
T cd01256 41 EKKYMLPLDGLKLRDI--EGGF 60 (110)
T ss_pred cccceeeccccEEEee--cccc
Confidence 3899999988873332 4664
No 104
>TIGR03807 RR_fam_repeat putative cofactor-binding repeat. This model describes a small repeat found in a family of proteins that crosses the plasma membrane by twin-arginine translation, which usually signifies the presence of a bound cofactor. This repeat shows similarity to the beta-helical repeat, in which three beta-strands per repeat wind once per repeat around in a right-handed helical stack of parallel beta structure.
Probab=22.74 E-value=82 Score=17.58 Aligned_cols=17 Identities=24% Similarity=0.370 Sum_probs=13.2
Q ss_pred cCEEEEEeeEEEEEEec
Q 032674 66 VKKLVSYDTEITGYVNK 82 (136)
Q Consensus 66 ~~~~v~Y~~~ItG~i~~ 82 (136)
.|..++|++.|||++=.
T Consensus 8 ~G~y~~~d~~vsGNvIr 24 (27)
T TIGR03807 8 WGIYLEFDAVVTGNVIR 24 (27)
T ss_pred eEEEEeeeeEEecceec
Confidence 45678899999997643
No 105
>cd07094 ALDH_F21_LactADH-like ALDH subfamily: NAD+-dependent, lactaldehyde dehydrogenase, ALDH family 21 A1, and related proteins. ALDH subfamily which includes Tortula ruralis aldehyde dehydrogenase ALDH21A1 (RNP123), and NAD+-dependent, lactaldehyde dehydrogenase (EC=1.2.1.22) and like sequences.
Probab=22.28 E-value=91 Score=26.91 Aligned_cols=30 Identities=33% Similarity=0.356 Sum_probs=22.9
Q ss_pred ccEEEeccccchhhH---HHHHHhCCCCCCCcC
Q 032674 6 GGVVKKGHEEGMKVA---SSLLEEFGLPLGLLP 35 (136)
Q Consensus 6 ~ae~~~g~~~~~~ta---~elL~~~glP~GLLP 35 (136)
++.|.+.++.+..++ .++|.+.|||.|++-
T Consensus 152 N~VI~Kps~~~p~~~~~l~~~l~~ag~P~g~~~ 184 (453)
T cd07094 152 CPVVLKPASKTPLSALELAKILVEAGVPEGVLQ 184 (453)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHcCCCcCcEE
Confidence 457778887665554 488999999999876
No 106
>PF06124 DUF960: Staphylococcal protein of unknown function (DUF960); InterPro: IPR009303 This family consists of several hypothetical proteins from several species of bacteria. The function of this family is unknown.; PDB: 2R41_C.
Probab=22.08 E-value=2.2e+02 Score=20.02 Aligned_cols=28 Identities=18% Similarity=0.245 Sum_probs=20.8
Q ss_pred CCCCCcCcCCceEEEEEccCCeEEEEeC
Q 032674 29 LPLGLLPLADVIEVGFVQTTGYMWILQK 56 (136)
Q Consensus 29 lP~GLLP~~~V~~y~l~~~tG~f~v~l~ 56 (136)
.=+|.+|+..+.-|.+....|.+.+...
T Consensus 27 ~lK~~~~ldyl~~F~l~~~~~~l~i~~~ 54 (94)
T PF06124_consen 27 NLKGVFPLDYLQIFKLINNKGKLTIEHS 54 (94)
T ss_dssp HTTTTS---SEEEEEEEEETTEEEEEEE
T ss_pred HhccCCCCCceEEEEeEccCCeEEEEEe
Confidence 3478899999999999998999877755
No 107
>cd07086 ALDH_F7_AASADH-like NAD+-dependent alpha-aminoadipic semialdehyde dehydrogenase and related proteins. ALDH subfamily which includes the NAD+-dependent, alpha-aminoadipic semialdehyde dehydrogenase (AASADH, EC=1.2.1.31), also known as Antiquitin-1, ALDH7A1, ALDH7B or delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH), and other similar sequences, such as the uncharacterized aldehyde dehydrogenase of Candidatus kuenenia AldH (locus CAJ73105).
Probab=22.00 E-value=89 Score=27.37 Aligned_cols=30 Identities=37% Similarity=0.463 Sum_probs=22.1
Q ss_pred ccEEEeccccchhhH---HHHHHhC----CCCCCCcC
Q 032674 6 GGVVKKGHEEGMKVA---SSLLEEF----GLPLGLLP 35 (136)
Q Consensus 6 ~ae~~~g~~~~~~ta---~elL~~~----glP~GLLP 35 (136)
++.|++.++.+..++ .++|++. |||.|++=
T Consensus 162 N~VIlKps~~~p~~~~~l~~~~~~al~~~glP~gvv~ 198 (478)
T cd07086 162 NTVVWKPSETTPLTAIAVTKILAEVLEKNGLPPGVVN 198 (478)
T ss_pred CeEEEECCCcchHHHHHHHHHHHHhhhccCCCccceE
Confidence 467888888776554 4777777 99999875
No 108
>cd07092 ALDH_ABALDH-YdcW Escherichia coli NAD+-dependent gamma-aminobutyraldehyde dehydrogenase YdcW-like. NAD+-dependent, tetrameric, gamma-aminobutyraldehyde dehydrogenase (ABALDH), YdcW of Escherichia coli K12, catalyzes the oxidation of gamma-aminobutyraldehyde to gamma-aminobutyric acid. ABALDH can also oxidize n-alkyl medium-chain aldehydes, but with a lower catalytic efficiency.
Probab=21.84 E-value=89 Score=26.90 Aligned_cols=29 Identities=31% Similarity=0.311 Sum_probs=21.4
Q ss_pred ccEEEeccccchhhH---HHHHHhCCCCCCCcC
Q 032674 6 GGVVKKGHEEGMKVA---SSLLEEFGLPLGLLP 35 (136)
Q Consensus 6 ~ae~~~g~~~~~~ta---~elL~~~glP~GLLP 35 (136)
++.|.+.++.+..++ .++|++ |||.|++=
T Consensus 147 N~VIlKps~~~~~~~~~l~~~~~~-glP~g~~~ 178 (450)
T cd07092 147 NTVVLKPSETTPLTTLLLAELAAE-VLPPGVVN 178 (450)
T ss_pred CEEEEECCccchHHHHHHHHHHHh-cCCcccEE
Confidence 457788888766654 588888 99888764
No 109
>PF05963 Cytomega_US3: Cytomegalovirus US3 protein; InterPro: IPR009237 US3 of human cytomegalovirus is an endoplasmic reticulum resident transmembrane glycoprotein that binds to major histocompatibility complex class I molecules and prevents their departure. The endoplasmic reticulum retention signal of the US3 protein is contained in the luminal domain of the protein [].; PDB: 1IM3_L.
Probab=21.49 E-value=1.6e+02 Score=23.69 Aligned_cols=60 Identities=17% Similarity=0.243 Sum_probs=23.5
Q ss_pred CCCCCCCc-CcCCceEEEEEccCCeEEEEeCCeEEEEEeecCEEEEEeeEEEEEEecCceeeccceE
Q 032674 27 FGLPLGLL-PLADVIEVGFVQTTGYMWILQKKKVEHSFKMVKKLVSYDTEITGYVNKNVIKKLKGVK 92 (136)
Q Consensus 27 ~glP~GLL-P~~~V~~y~l~~~tG~f~v~l~~~c~~~f~~~~~~v~Y~~~ItG~i~~g~i~~L~GVk 92 (136)
.+||-|.= |..++++ .+-..--.|+|.++. |.++ +-++...-+|+|++.+--.-+.-+++
T Consensus 15 l~~~~~~p~p~~~~~~-~~~a~~~~ftV~~n~---C~ie--~Gklf~~G~I~GN~t~~~fv~~~v~~ 75 (187)
T PF05963_consen 15 LGLTDGFPRPVPEITE-QLTARRAHFTVEQNR---CYIE--GGKLFMTGRISGNFTKSHFVQVGVVG 75 (187)
T ss_dssp -------------------------EEEEEEE---EEES--SSEEEEEEEEEE--S-EEEEESSS-E
T ss_pred cccccCCCCchHHHHh-hhccCCceEEEEeee---EEEE--CCEEEEEEEEeeeeeeEEEEEEeeee
Confidence 45555542 5445666 332222348888753 5566 55888999999999865555555554
No 110
>cd03864 M14_CPN Peptidase M14 Carboxypeptidase N (CPN, also known as kininase I, creatine kinase conversion factor, plasma carboxypeptidase B, arginine carboxypeptidase, and protaminase; EC 3.4.17.3) is an extracellular glycoprotein synthesized in the liver and released into the blood, where it is present in high concentrations. CPN belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPN plays an important role in protecting the body from excessive buildup of potentially deleterious peptides that normally act as local autocrine or paracrine hormones. It specifically removes C-terminal basic residues. As CPN can cleave lysine more avidly than arginine residues it is also called lysine carboxypeptidase. CPN substrates inclu
Probab=21.40 E-value=31 Score=30.15 Aligned_cols=65 Identities=17% Similarity=0.267 Sum_probs=44.8
Q ss_pred CCCCC--------cCcCCceEEEEEccCCeEEEEeCCeEEEEEeecCEE-----------EEE----eeEEEEEEecCce
Q 032674 29 LPLGL--------LPLADVIEVGFVQTTGYMWILQKKKVEHSFKMVKKL-----------VSY----DTEITGYVNKNVI 85 (136)
Q Consensus 29 lP~GL--------LP~~~V~~y~l~~~tG~f~v~l~~~c~~~f~~~~~~-----------v~Y----~~~ItG~i~~g~i 85 (136)
||.|+ ++ +++++|.|.. |+-|++.+.=.| |+|...+.. +.| ...|+|+|....=
T Consensus 251 f~~gitnGa~wy~~~-GgmqD~~Y~~-~nc~e~t~el~c-~k~p~~~~l~~~w~~n~~all~~~~~~~~gI~G~V~D~~g 327 (392)
T cd03864 251 FDEGITNGASWYSLS-KGMQDFNYLH-TNCFEITLELSC-DKFPPEEELEREWLGNREALISYIEQVHQGIKGMVTDENN 327 (392)
T ss_pred CCCCcccCceeEecC-CCchhhhhhc-cCeeEEEEeccc-cCCCCHHHHHHHHHHHHHHHHHHHHHhcCeEEEEEECCCC
Confidence 67776 45 7899999984 778888888778 678743311 111 3589999977533
Q ss_pred eeccceEEEEE
Q 032674 86 KKLKGVKAKEL 96 (136)
Q Consensus 86 ~~L~GVk~K~l 96 (136)
.-|.|+.+++.
T Consensus 328 ~pi~~A~V~v~ 338 (392)
T cd03864 328 NGIANAVISVS 338 (392)
T ss_pred CccCCeEEEEE
Confidence 57778777764
No 111
>PLN02419 methylmalonate-semialdehyde dehydrogenase [acylating]
Probab=21.36 E-value=84 Score=29.11 Aligned_cols=30 Identities=30% Similarity=0.348 Sum_probs=22.8
Q ss_pred ccEEEeccccchhh---HHHHHHhCCCCCCCcC
Q 032674 6 GGVVKKGHEEGMKV---ASSLLEEFGLPLGLLP 35 (136)
Q Consensus 6 ~ae~~~g~~~~~~t---a~elL~~~glP~GLLP 35 (136)
++.|++.++.+..+ ..+++.+.|||.|++=
T Consensus 278 NtVVlKPSe~tp~ta~~l~~l~~eAGlP~Gvvn 310 (604)
T PLN02419 278 NTFILKPSEKDPGASVILAELAMEAGLPDGVLN 310 (604)
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHhCcCcceEE
Confidence 45678888865444 4488999999999876
No 112
>cd07124 ALDH_PutA-P5CDH-RocA Delta(1)-pyrroline-5-carboxylate dehydrogenase, RocA. Delta(1)-pyrroline-5-carboxylate dehydrogenase (EC=1.5.1.12 ), RocA: a proline catabolic enzyme of the aldehyde dehydrogenase (ALDH) protein superfamily. The proline catabolic enzymes, proline dehydrogenase and Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH), catalyze the two-step oxidation of proline to glutamate; P5CDH catalyzes the oxidation of glutamate semialdehyde, utilizing NAD+ as the electron acceptor. In some bacteria, the two enzymes are fused into the bifunctional flavoenzyme, proline utilization A (PutA). In this CD, monofunctional enzyme sequences such as seen in the Bacillus subtilis RocA P5CDH are also present. These enzymes play important roles in cellular redox control, superoxide generation, and apoptosis.
Probab=20.82 E-value=96 Score=27.50 Aligned_cols=30 Identities=37% Similarity=0.489 Sum_probs=22.1
Q ss_pred ccEEEeccccchhh---HHHHHHhCCCCCCCcC
Q 032674 6 GGVVKKGHEEGMKV---ASSLLEEFGLPLGLLP 35 (136)
Q Consensus 6 ~ae~~~g~~~~~~t---a~elL~~~glP~GLLP 35 (136)
++.|.+.++.+..+ ..++|++.|||.|++=
T Consensus 195 N~VVlKPs~~tp~~~~~l~~~~~~aGlP~gvv~ 227 (512)
T cd07124 195 NTVVLKPAEDTPVIAAKLVEILEEAGLPPGVVN 227 (512)
T ss_pred CEEEEECCccccHHHHHHHHHHHHhCcCCCceE
Confidence 35667777665444 4589999999999985
No 113
>PRK13489 chemoreceptor glutamine deamidase CheD; Provisional
Probab=20.81 E-value=1.7e+02 Score=24.08 Aligned_cols=36 Identities=19% Similarity=0.324 Sum_probs=27.6
Q ss_pred hhHHHHHHhCCCCC------CCcCcCCceEEEEEccCCeEEEEeCC
Q 032674 18 KVASSLLEEFGLPL------GLLPLADVIEVGFVQTTGYMWILQKK 57 (136)
Q Consensus 18 ~ta~elL~~~glP~------GLLP~~~V~~y~l~~~tG~f~v~l~~ 57 (136)
+.|.++|+++|+|. |--+ ..|. |+..||.+||+.-.
T Consensus 128 eaa~~~L~~~gI~IvaeDvGG~~g-RkV~---f~~~TG~v~Vk~~~ 169 (233)
T PRK13489 128 DFVRRYLALERIRITAEDLQGVHP-RKVA---FMPRTGRAMVKKLR 169 (233)
T ss_pred HHHHHHHHHcCCcEEEEeCCCCCC-cEEE---EECCCCEEEEEEcC
Confidence 46889999999994 6666 3344 77889999998653
No 114
>cd07121 ALDH_EutE Ethanolamine utilization protein EutE-like. Coenzyme A acylating aldehyde dehydrogenase (ACDH), an NAD+ and CoA-dependent acetaldehyde dehydrogenase, acetylating (EC=1.2.1.10), converts acetaldehyde into acetyl-CoA. This CD is limited to such monofunctional enzymes as the Ethanolamine utilization protein, EutE, in Salmonella typhimurium. Mutations in eutE abolish the ability to utilize ethanolamine as a carbon source.
Probab=20.66 E-value=96 Score=27.06 Aligned_cols=30 Identities=33% Similarity=0.387 Sum_probs=23.0
Q ss_pred ccEEEeccccchhhHH---HHH----HhCCCCCCCcC
Q 032674 6 GGVVKKGHEEGMKVAS---SLL----EEFGLPLGLLP 35 (136)
Q Consensus 6 ~ae~~~g~~~~~~ta~---elL----~~~glP~GLLP 35 (136)
++.|+++++.+..++. +++ .+.|+|.|++-
T Consensus 126 N~VVlKpse~tp~t~~~l~~l~~~~~~~aGlP~gvv~ 162 (429)
T cd07121 126 NAVVFNPHPGAKKVSAYAVELINKAIAEAGGPDNLVV 162 (429)
T ss_pred CCEEEECCccchhHHHHHHHHHHHHHHHcCCCcceEE
Confidence 5678899998877765 444 47899999986
No 115
>PRK09364 moaC molybdenum cofactor biosynthesis protein MoaC; Provisional
Probab=20.49 E-value=3.8e+02 Score=20.82 Aligned_cols=21 Identities=14% Similarity=0.056 Sum_probs=16.7
Q ss_pred ccccchhhHHHHHHhCCCCCC
Q 032674 12 GHEEGMKVASSLLEEFGLPLG 32 (136)
Q Consensus 12 g~~~~~~ta~elL~~~glP~G 32 (136)
|.-.-.+.++++|++..+|+|
T Consensus 32 g~I~l~~e~~~~i~~~~~~KG 52 (159)
T PRK09364 32 GSVRMSPETLALIRDGTAKKG 52 (159)
T ss_pred EEEEECHHHHHHHHhCCCCCc
Confidence 333445778999999999999
No 116
>PLN00412 NADP-dependent glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=20.35 E-value=97 Score=27.45 Aligned_cols=30 Identities=27% Similarity=0.377 Sum_probs=23.5
Q ss_pred ccEEEeccccchhh---HHHHHHhCCCCCCCcC
Q 032674 6 GGVVKKGHEEGMKV---ASSLLEEFGLPLGLLP 35 (136)
Q Consensus 6 ~ae~~~g~~~~~~t---a~elL~~~glP~GLLP 35 (136)
++.|++.++.+..+ ..++|.+.|||.|++=
T Consensus 187 N~VIlKPs~~t~~~~~~l~~~l~~aglP~g~~~ 219 (496)
T PLN00412 187 NAVVLKPPTQGAVAALHMVHCFHLAGFPKGLIS 219 (496)
T ss_pred CEEEEECCccCcHHHHHHHHHHHHhCCCcccEE
Confidence 45788888876544 4589999999999975
No 117
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=20.04 E-value=2.7e+02 Score=24.34 Aligned_cols=46 Identities=15% Similarity=0.072 Sum_probs=30.3
Q ss_pred cCCceEEEEEccCCeEEEEeC------CeEEEEEeecCEEEEEeeEEEEEEe
Q 032674 36 LADVIEVGFVQTTGYMWILQK------KKVEHSFKMVKKLVSYDTEITGYVN 81 (136)
Q Consensus 36 ~~~V~~y~l~~~tG~f~v~l~------~~c~~~f~~~~~~v~Y~~~ItG~i~ 81 (136)
..+|.+|.+|+++|++++-=. .+|.+.++..++.|.=..=-+|.|+
T Consensus 63 ~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~ 114 (346)
T COG2706 63 EGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVS 114 (346)
T ss_pred cCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEE
Confidence 568999999998999876422 3599988876644432222334443
Done!