Query 032675
Match_columns 136
No_of_seqs 114 out of 216
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 06:47:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032675.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032675hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nct_A Protein PSIB; DNA bindi 47.7 9.4 0.00032 29.2 2.1 45 85-129 4-69 (144)
2 2jws_A GA88; evolution, foldin 37.4 11 0.00036 24.8 0.8 35 42-80 11-46 (56)
3 1q2z_A ATP-dependent DNA helic 20.1 1.2E+02 0.004 21.4 3.9 45 46-91 68-112 (120)
4 4day_C Fanconi anemia group M 16.0 43 0.0015 20.2 0.7 12 123-134 9-20 (37)
5 2fs1_A PSD-1; solution structu 14.9 49 0.0017 21.6 0.7 34 42-79 11-45 (56)
6 2l9s_A PHD finger protein 12; 13.2 1.1E+02 0.0037 19.0 2.0 16 48-63 14-29 (45)
7 1gjs_A Immunoglobulin G bindin 11.5 73 0.0025 21.3 0.8 34 42-79 22-56 (65)
8 2w4s_A Ankyrin-repeat protein; 9.9 2.7E+02 0.0091 20.0 3.4 74 25-98 16-94 (113)
9 1rw2_A ATP-dependent DNA helic 9.7 2E+02 0.007 21.2 2.8 46 46-92 99-144 (152)
10 2ykt_A Brain-specific angiogen 9.1 2E+02 0.007 22.7 2.8 26 31-56 127-152 (253)
No 1
>3nct_A Protein PSIB; DNA binding protein, chaperone; 2.20A {Escherichia coli}
Probab=47.69 E-value=9.4 Score=29.16 Aligned_cols=45 Identities=24% Similarity=0.182 Sum_probs=32.1
Q ss_pred CCCHHHHHHhhhccHHHHHHHHHHHhhh---------------------hhhhhhceeeeeeeecc
Q 032675 85 KYTQEELILMKTQDIGYILQKLQSERNV---------------------RNCFYIVFMVHIRIAFS 129 (136)
Q Consensus 85 ~~t~eq~klmkTQDl~Yv~~kr~~e~kK---------------------ie~~~~~~~~~~~~~~~ 129 (136)
.+|.++|.-|.+|++.-++..-.--++- -..|+--|||..||+|+
T Consensus 4 ~ltL~vL~tMsa~ElEd~R~~G~d~RR~LthAVmr~L~~P~gW~~naEy~~EFgGffPVq~RfsP~ 69 (144)
T 3nct_A 4 ELTLNVLQTMNAQEYEDIRAAGSDERRELTHAVMRELDAPDNWTMNGEYGSEFGGFFPVQVRFTPA 69 (144)
T ss_dssp ---CHHHHHCCHHHHHHHHHHCHHHHHHHHHHHHHTCCCCTTEEEEECSSSTTCSCSSSEEEEEET
T ss_pred eecHHHHhccCHHHHHHHHHHhHHHHHHHHHHHHhccCCCccceEeccccccccceeeEEEEEcCC
Confidence 6888999999999998887543333322 24688899999999997
No 2
>2jws_A GA88; evolution, folding, protein design, protein structure, de novo protein; NMR {Artificial gene} PDB: 2kdl_A 2lhg_A 2lhc_A 2lhd_A 2lhe_A 2kdm_A 2jwu_A
Probab=37.37 E-value=11 Score=24.79 Aligned_cols=35 Identities=40% Similarity=0.640 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHhhhCCCchhhhhhh-ceecCCccccc
Q 032675 42 RKKEETIRRLKEKAAFRNPDEFYLKMIK-TKIVDGVHRLE 80 (136)
Q Consensus 42 ~~K~~~lk~Lr~KA~~rNpDEFyf~M~~-~k~~~Gvh~~~ 80 (136)
..|...+..|.+.+- -||||.-|| +++++||.-.+
T Consensus 11 ~aK~~ai~el~~agi----~e~~~n~innakTVeGV~alk 46 (56)
T 2jws_A 11 QAKEEAIKELVDAGI----AEKYIKLIANAKTVEGVWTLK 46 (56)
T ss_dssp HHHHHHHHHHHHHTC----CHHHHHHHHTCSCHHHHHHHH
T ss_pred hhhHhHHHHHHHhhh----HHHHHHHhhcccccccccchH
Confidence 467778888877664 388888765 78888876543
No 3
>1q2z_A ATP-dependent DNA helicase II, 80 kDa subunit; KU, DNA repair, protein structure, spectroscopy, DNA-PK, KU86, KU80, protein binding; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=20.10 E-value=1.2e+02 Score=21.38 Aligned_cols=45 Identities=20% Similarity=0.356 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhhhCCCchhhhhhhceecCCccccccccCCCCHHHH
Q 032675 46 ETIRRLKEKAAFRNPDEFYLKMIKTKIVDGVHRLESEANKYTQEEL 91 (136)
Q Consensus 46 ~~lk~Lr~KA~~rNpDEFyf~M~~~k~~~Gvh~~~~~~~~~t~eq~ 91 (136)
+-|..|+++...++=.+|...+...+. +-+..........|+++-
T Consensus 68 ~Fl~~Lk~~~~~~~l~~FW~~iv~~~l-gLI~~~E~~~S~vt~eeA 112 (120)
T 1q2z_A 68 NFLKALQEKVEIKQLNHFWEIVVQDGI-TLITKEEASGSSVTAEEA 112 (120)
T ss_dssp HHHHHHHHHHHTTSTTHHHHHHHHTTC-CSCCSTTSSSCCCCHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHCCc-CCCcHhhccccCCCHHHH
Confidence 357788888888887889886655322 222333333456788774
No 4
>4day_C Fanconi anemia group M protein; OB fold, protein binding-hydrolase complex; 3.30A {Homo sapiens}
Probab=16.05 E-value=43 Score=20.20 Aligned_cols=12 Identities=50% Similarity=0.720 Sum_probs=8.9
Q ss_pred eeeeecceeeee
Q 032675 123 HIRIAFSITFDI 134 (136)
Q Consensus 123 ~~~~~~~~~~~~ 134 (136)
|-+--||||||+
T Consensus 9 ~S~~LFSVnFDL 20 (37)
T 4day_C 9 CSRDLFSVTFDL 20 (37)
T ss_pred cccceEEEEecc
Confidence 345568999996
No 5
>2fs1_A PSD-1; solution structure, protein binding; NMR {Finegoldia magna atcc 29328}
Probab=14.94 E-value=49 Score=21.55 Aligned_cols=34 Identities=38% Similarity=0.734 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHhhhCCCchhhhhhh-ceecCCcccc
Q 032675 42 RKKEETIRRLKEKAAFRNPDEFYLKMIK-TKIVDGVHRL 79 (136)
Q Consensus 42 ~~K~~~lk~Lr~KA~~rNpDEFyf~M~~-~k~~~Gvh~~ 79 (136)
..|+..|+.|.+--. ..||+.-|| ++|++||...
T Consensus 11 eAKe~Ai~El~~~GI----sd~y~~~In~AkTvEgv~~L 45 (56)
T 2fs1_A 11 QAKEAAIKELKQYGI----GDYYIKLINNAKTVEGVESL 45 (56)
T ss_dssp HHHHHHHHHHHHHCC----CHHHHHHHHTCSSSHHHHHH
T ss_pred HHHHHHHHHHHHcCc----hHHHHHHhhhhhhHHHHHHH
Confidence 345555555543221 678888876 6888887543
No 6
>2l9s_A PHD finger protein 12; protein-peptide complex, amphipathic helix motif, transcript; NMR {Homo sapiens} PDB: 2lkm_A
Probab=13.19 E-value=1.1e+02 Score=19.05 Aligned_cols=16 Identities=38% Similarity=0.486 Sum_probs=12.8
Q ss_pred HHHHHHHHhhhCCCch
Q 032675 48 IRRLKEKAAFRNPDEF 63 (136)
Q Consensus 48 lk~Lr~KA~~rNpDEF 63 (136)
+..|=+.|...||.+|
T Consensus 14 f~~Li~aA~~~NP~qF 29 (45)
T 2l9s_A 14 FELLIAAAMERNPTQF 29 (45)
T ss_dssp HHHHHHHHHHSSCCCS
T ss_pred HHHHHHHHHHhChhhh
Confidence 3456678999999988
No 7
>1gjs_A Immunoglobulin G binding protein G; immunoglobulin-binding protein, bacterial surface protein, albumin binding; NMR {Streptococcus SP} SCOP: a.8.1.2 PDB: 1gjt_A
Probab=11.52 E-value=73 Score=21.31 Aligned_cols=34 Identities=29% Similarity=0.504 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHhhhCCCchhhhhhh-ceecCCcccc
Q 032675 42 RKKEETIRRLKEKAAFRNPDEFYLKMIK-TKIVDGVHRL 79 (136)
Q Consensus 42 ~~K~~~lk~Lr~KA~~rNpDEFyf~M~~-~k~~~Gvh~~ 79 (136)
..|+..|+.|.+--. ..||+.-|| ++|++||...
T Consensus 22 eAKe~Ai~EL~~~GI----sd~y~~~In~AkTvEgV~aL 56 (65)
T 1gjs_A 22 EAKVLANRELDKYGV----SDYYKNLINNAKTVEGVKAL 56 (65)
T ss_dssp HHHHHHHHHHHHHTC----CHHHHHHHHTCCSHHHHHHH
T ss_pred HHHHHHHHHHHHcCc----cHHHHHhhhccchHHHHHHH
Confidence 456666666654322 668888776 6888887543
No 8
>2w4s_A Ankyrin-repeat protein; RNA transport, structural protein; 2.45A {Cryptosporidium parvum}
Probab=9.90 E-value=2.7e+02 Score=20.02 Aligned_cols=74 Identities=15% Similarity=0.247 Sum_probs=45.5
Q ss_pred cccccccccHHHHHHHHHHHHHHHHHHHHHH-hhhCCCchhhhhhhceecCCcccc--c--cccCCCCHHHHHHhhhcc
Q 032675 25 FGLLEKHKDYVVRAKAYRKKEETIRRLKEKA-AFRNPDEFYLKMIKTKIVDGVHRL--E--SEANKYTQEELILMKTQD 98 (136)
Q Consensus 25 lGlLEKkKDY~~RA~dy~~K~~~lk~Lr~KA-~~rNpDEFyf~M~~~k~~~Gvh~~--~--~~~~~~t~eq~klmkTQD 98 (136)
.+|-|.+.+.+.|+=..-=....+..|.+-. -+.|...+.-.-...||.+||-.. + ...+..+.+.+-.+...+
T Consensus 16 ~~L~E~k~~li~RvV~~lG~~~~~~L~~eT~~IE~~GG~~t~dGsRrRTpGGVF~~LlK~~~~~~~~~k~~i~~i~~~e 94 (113)
T 2w4s_A 16 TGLQEPKKEFIARVIKTIGSQRSLQLYENAMKVENSGGLLTADMSRRKTIGGVFCYLLKQLVAEDQITIQEWNYIRQEE 94 (113)
T ss_dssp HHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCTTSSSBCCHHHHHHHHHHHHHHTTSSCHHHHHHHHC--
T ss_pred HHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCEECcCCCccccCCcchhHHHhhcCchhhhhHHHHHHHHHHH
Confidence 3577999999999999999999898888754 466665565555556777787432 1 122344666655544433
No 9
>1rw2_A ATP-dependent DNA helicase II, 80 kDa subunit; KU80, NHEJ, structure, DNA-PK, DNA binding protein; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=9.67 E-value=2e+02 Score=21.23 Aligned_cols=46 Identities=17% Similarity=0.327 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhhhCCCchhhhhhhceecCCccccccccCCCCHHHHH
Q 032675 46 ETIRRLKEKAAFRNPDEFYLKMIKTKIVDGVHRLESEANKYTQEELI 92 (136)
Q Consensus 46 ~~lk~Lr~KA~~rNpDEFyf~M~~~k~~~Gvh~~~~~~~~~t~eq~k 92 (136)
+-|..|+++...++=.+|...+...+ -+-+.....+....|+++-+
T Consensus 99 ~Fl~~LK~~l~~~~l~~FW~~Iv~~~-lgLI~~~Es~~S~Vt~eeA~ 144 (152)
T 1rw2_A 99 NFLKALQEKVEIKQLNHFWEIVVQDG-ITLITKEEASGSSVTAEEAK 144 (152)
T ss_dssp HHHHHHHHHHHHSCCHHHHHHHHHHT-CSSCSSSSSSSCSCCTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHCC-cccccHhhccccCCCHHHHH
Confidence 35778888888888888888654432 22222333334567777644
No 10
>2ykt_A Brain-specific angiogenesis inhibitor 1-associate protein 2; signaling protein, NPY motif, binding pocket; 2.11A {Homo sapiens} PDB: 1y2o_A 1wdz_A
Probab=9.08 E-value=2e+02 Score=22.71 Aligned_cols=26 Identities=15% Similarity=0.351 Sum_probs=20.8
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHh
Q 032675 31 HKDYVVRAKAYRKKEETIRRLKEKAA 56 (136)
Q Consensus 31 kKDY~~RA~dy~~K~~~lk~Lr~KA~ 56 (136)
.++|+.+..++.+.+..++.|+.|+.
T Consensus 127 ~~e~k~~~~~l~K~~~e~~kl~KK~k 152 (253)
T 2ykt_A 127 QTEQRSKGDALDKCQAELKKLRKKSQ 152 (253)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHhHhHHHHHHHHHHHHHhhcc
Confidence 47888889999999999999998765
Done!