Query 032675
Match_columns 136
No_of_seqs 114 out of 216
Neff 3.7
Searched_HMMs 13730
Date Mon Mar 25 06:47:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032675.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032675hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2j5ya1 a.8.1.2 (A:1-53) PAB { 44.1 4.8 0.00035 24.5 1.6 35 42-79 9-44 (53)
2 d2gaxa1 c.131.1.1 (A:1-135) Hy 35.8 0.42 3E-05 33.7 -5.1 65 45-123 65-134 (135)
3 d1gjsa_ a.8.1.2 (A:) IgG bindi 35.5 5.2 0.00038 25.3 0.7 46 29-78 9-55 (65)
4 d1f15a_ b.121.4.5 (A:) Cucumov 14.0 17 0.0013 26.1 -0.0 20 109-134 39-58 (157)
5 d1rw2a_ a.118.19.1 (A:) C-term 13.0 73 0.0053 21.9 3.2 45 47-92 100-144 (152)
6 d1smyd_ e.29.1.2 (D:) RNA-poly 9.9 20 0.0015 33.3 -1.1 34 59-107 1065-1098(1504)
7 d1pzra_ a.38.2.1 (A:) Erythron 9.8 46 0.0034 20.1 1.0 32 62-93 4-35 (60)
8 d1kv9a1 a.3.1.6 (A:561-664) Qu 7.5 1.9E+02 0.014 17.0 3.4 22 84-109 78-99 (104)
9 d1twfa_ e.29.1.2 (A:) RBP1 {Ba 7.4 31 0.0022 31.3 -1.0 49 59-125 808-856 (1449)
10 d1f1fa_ a.3.1.1 (A:) Cytochrom 6.4 2.1E+02 0.015 15.9 3.0 19 84-106 66-84 (88)
No 1
>d2j5ya1 a.8.1.2 (A:1-53) PAB {Peptostreptococcus magnus [TaxId: 1260]}
Probab=44.08 E-value=4.8 Score=24.51 Aligned_cols=35 Identities=34% Similarity=0.567 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHhhhCCCchhhhhhh-ceecCCcccc
Q 032675 42 RKKEETIRRLKEKAAFRNPDEFYLKMIK-TKIVDGVHRL 79 (136)
Q Consensus 42 ~~K~~~lk~Lr~KA~~rNpDEFyf~M~~-~k~~~Gvh~~ 79 (136)
+.|++.|+.|++- ==..+|||..|| .+++.||...
T Consensus 9 ~AKe~AI~eLK~~---GIts~~y~~~InkaKTVEgV~aL 44 (53)
T d2j5ya1 9 NAKEDAIAELKKA---GITSDFYFNAINKAKTVEEVNAL 44 (53)
T ss_dssp HHHHHHHHHHHHT---TCCCHHHHHHHHHCCSHHHHHHH
T ss_pred HHHHHHHHHHHHc---CccHHHHHHHHHhhhhHHHHHHH
Confidence 4577777777652 234689999888 5778887543
No 2
>d2gaxa1 c.131.1.1 (A:1-135) Hypothetical protein Atu0240 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=35.79 E-value=0.42 Score=33.74 Aligned_cols=65 Identities=12% Similarity=0.196 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHhhhCC--CchhhhhhhceecCCccccccccCCCCHHH---HHHhhhccHHHHHHHHHHHhhhhhhhhhc
Q 032675 45 EETIRRLKEKAAFRNP--DEFYLKMIKTKIVDGVHRLESEANKYTQEE---LILMKTQDIGYILQKLQSERNVRNCFYIV 119 (136)
Q Consensus 45 ~~~lk~Lr~KA~~rNp--DEFyf~M~~~k~~~Gvh~~~~~~~~~t~eq---~klmkTQDl~Yv~~kr~~e~kKie~~~~~ 119 (136)
.+.|+.|+++|.+++= --|--.|..+. ...|+ ++...++|+.|+-.-.--++|.|++++..
T Consensus 65 ~~~L~~l~~~al~~~i~~~~f~~~m~~t~--------------~~~~~~~~~~~~~~~dl~~vGial~G~kk~Vdklt~~ 130 (135)
T d2gaxa1 65 QEALRKIHQRSLERDITTSLYIEEMFATG--------------HDAANRQVFSHFSPDTAKVVGMALRADRKIVDKITKG 130 (135)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEEGGGGGCC--------------CHHHHHHHHTTCCTTTCCEEEEEEEEEHHHHHHHTTT
T ss_pred HHHHHHHHHHHhcCCCceeechHHHHhcC--------------CHHHHHHHHhccChhhccEEEEEEECCHHHHHHHhcC
Confidence 5789999999997420 01333332221 12233 33445699999999889999999999999
Q ss_pred eeee
Q 032675 120 FMVH 123 (136)
Q Consensus 120 ~~~~ 123 (136)
+++|
T Consensus 131 l~Lh 134 (135)
T d2gaxa1 131 AKLH 134 (135)
T ss_dssp CEEC
T ss_pred CCCC
Confidence 9987
No 3
>d1gjsa_ a.8.1.2 (A:) IgG binding protein G {Streptococcus sp., group G [TaxId: 1306]}
Probab=35.47 E-value=5.2 Score=25.31 Aligned_cols=46 Identities=24% Similarity=0.379 Sum_probs=33.0
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHhhhCCCchhhhhhh-ceecCCccc
Q 032675 29 EKHKDYVVRAKAYRKKEETIRRLKEKAAFRNPDEFYLKMIK-TKIVDGVHR 78 (136)
Q Consensus 29 EKkKDY~~RA~dy~~K~~~lk~Lr~KA~~rNpDEFyf~M~~-~k~~~Gvh~ 78 (136)
+++-|-+.-..=-+.|+..++.|++--- .+|||..|| +||+.||.-
T Consensus 9 ~k~ed~v~~~~L~~AKe~Ai~Elk~yGi----sdyy~nlIN~AKTVEGV~a 55 (65)
T d1gjsa_ 9 AQHDEAVDANSLAEAKVLANRELDKYGV----SDYYKNLINNAKTVEGVKA 55 (65)
T ss_dssp SSCCSSCTHHHHHHHHHHHHHHHHHHTC----CHHHHHHHHTCCSHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHcCc----hHHHHHHHhccchHHHHHH
Confidence 4555555555556788888888887654 589999987 688888753
No 4
>d1f15a_ b.121.4.5 (A:) Cucumovirus coat protein {CMV (Cucumber mosaic virus), strain fny [TaxId: 12305]}
Probab=14.04 E-value=17 Score=26.09 Aligned_cols=20 Identities=20% Similarity=0.346 Sum_probs=16.9
Q ss_pred Hhhhhhhhhhceeeeeeeecceeeee
Q 032675 109 ERNVRNCFYIVFMVHIRIAFSITFDI 134 (136)
Q Consensus 109 e~kKie~~~~~~~~~~~~~~~~~~~~ 134 (136)
.+||+.| |-+|+.||-.||-
T Consensus 39 pKkkvs~------vQ~rlNPsPkFdS 58 (157)
T d1f15a_ 39 DKKLVSR------LQIRVNPLPKFDS 58 (157)
T ss_dssp TTSEEEE------EEEEEEECTTCCS
T ss_pred chhheeE------EEEecCCCcccCc
Confidence 3678888 9999999999984
No 5
>d1rw2a_ a.118.19.1 (A:) C-terminal domain of Ku80 {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.00 E-value=73 Score=21.88 Aligned_cols=45 Identities=20% Similarity=0.334 Sum_probs=27.2
Q ss_pred HHHHHHHHHhhhCCCchhhhhhhceecCCccccccccCCCCHHHHH
Q 032675 47 TIRRLKEKAAFRNPDEFYLKMIKTKIVDGVHRLESEANKYTQEELI 92 (136)
Q Consensus 47 ~lk~Lr~KA~~rNpDEFyf~M~~~k~~~Gvh~~~~~~~~~t~eq~k 92 (136)
-|..|+.++..+|-.+|....+..++ +=+.....+....|.||.+
T Consensus 100 FL~~LK~~~l~~~l~~FW~~i~~~~l-gLIs~~E~~~S~Vt~eeA~ 144 (152)
T d1rw2a_ 100 FLKALQEKVEIKQLNHFWEIVVQDGI-TLITKEEASGSSVTAEEAK 144 (152)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHTC-SSCSSSSSSSCSCCTHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHcCC-ccCChhhcccCCCCHHHHH
Confidence 46778888888887788866555443 2122222233568888755
No 6
>d1smyd_ e.29.1.2 (D:) RNA-polymerase beta-prime {Thermus thermophilus [TaxId: 274]}
Probab=9.88 E-value=20 Score=33.28 Aligned_cols=34 Identities=24% Similarity=0.465 Sum_probs=23.3
Q ss_pred CCCchhhhhhhceecCCccccccccCCCCHHHHHHhhhccHHHHHHHHH
Q 032675 59 NPDEFYLKMIKTKIVDGVHRLESEANKYTQEELILMKTQDIGYILQKLQ 107 (136)
Q Consensus 59 NpDEFyf~M~~~k~~~Gvh~~~~~~~~~t~eq~klmkTQDl~Yv~~kr~ 107 (136)
+|.||||+.+.+| .|. .. --+||-|-+|++-++.
T Consensus 1065 tP~EFFFHtMGGR--EGL----------ID---TAVKTA~SGYLqRRLV 1098 (1504)
T d1smyd_ 1065 TVLEYFISSHGAR--KGG----------AD---TALRTADSGYLTRKLV 1098 (1504)
T ss_dssp CHHHHHHHHHHHH--HHH----------HH---HHHHHSCSHHHHHHHH
T ss_pred CHHHHHhhcCCCc--chh----------hh---hhccccccchhhHHHH
Confidence 5778888877666 331 11 1269999999987776
No 7
>d1pzra_ a.38.2.1 (A:) Erythronolide synthase {Saccharopolyspora erythraea [TaxId: 1836]}
Probab=9.83 E-value=46 Score=20.11 Aligned_cols=32 Identities=25% Similarity=0.271 Sum_probs=25.7
Q ss_pred chhhhhhhceecCCccccccccCCCCHHHHHH
Q 032675 62 EFYLKMIKTKIVDGVHRLESEANKYTQEELIL 93 (136)
Q Consensus 62 EFyf~M~~~k~~~Gvh~~~~~~~~~t~eq~kl 93 (136)
.=.|.|...+..+|....-++.+.+|+|-++-
T Consensus 4 delfsmldqrfgggedllms~~~gmtedkLRR 35 (60)
T d1pzra_ 4 DELFSMLDQRFGGGEDLLMSGDNGMTEEKLRR 35 (60)
T ss_dssp HHHHHHHHHHHHCCCSSCCCCCCSSHHHHHHH
T ss_pred HHHHHHHHHhhcCcchhhccCCCCCCHHHHHH
Confidence 34689999999888887777778899998763
No 8
>d1kv9a1 a.3.1.6 (A:561-664) Quinoprotein alcohol dehydrogenase, C-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}
Probab=7.49 E-value=1.9e+02 Score=17.04 Aligned_cols=22 Identities=18% Similarity=0.400 Sum_probs=17.3
Q ss_pred CCCCHHHHHHhhhccHHHHHHHHHHH
Q 032675 84 NKYTQEELILMKTQDIGYILQKLQSE 109 (136)
Q Consensus 84 ~~~t~eq~klmkTQDl~Yv~~kr~~e 109 (136)
..||++|+..+=+ ||..+...+
T Consensus 78 ~~Lsd~ei~~v~a----Yi~s~~~~~ 99 (104)
T d1kv9a1 78 DSLKPEEVEQIKL----YVMSREYED 99 (104)
T ss_dssp TTCCHHHHHHHHH----HHHHHHHHH
T ss_pred cCCCHHHHHHHHH----HHHHhCcch
Confidence 4699999998877 998766544
No 9
>d1twfa_ e.29.1.2 (A:) RBP1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=7.43 E-value=31 Score=31.28 Aligned_cols=49 Identities=22% Similarity=0.498 Sum_probs=28.4
Q ss_pred CCCchhhhhhhceecCCccccccccCCCCHHHHHHhhhccHHHHHHHHHHHhhhhhhhhhceeeeee
Q 032675 59 NPDEFYLKMIKTKIVDGVHRLESEANKYTQEELILMKTQDIGYILQKLQSERNVRNCFYIVFMVHIR 125 (136)
Q Consensus 59 NpDEFyf~M~~~k~~~Gvh~~~~~~~~~t~eq~klmkTQDl~Yv~~kr~~e~kKie~~~~~~~~~~~ 125 (136)
||.||||+.+.+| .|. -. --+||.|-+|+.-+...-. |-+.+.+--|.|
T Consensus 808 ~p~Eyf~h~~~gR--eGL----------iD---TAvkTa~sGYl~RrLvk~l---edv~v~yD~tvr 856 (1449)
T d1twfa_ 808 TPQEFFFHAMGGR--EGL----------ID---TAVKTAETGYIQRRLVKAL---EDIMVHYDNTTR 856 (1449)
T ss_dssp CHHHHHHHHHHHH--HHH----------HH---HHHHHHHHHHHHHHHHHHH---TTCEECTTSCEE
T ss_pred cchheeeeeccch--hhh----------hh---hcccccccHHHHHHHHHHh---cCeEEEecCccC
Confidence 5667777766655 231 11 1269999999987765433 444444444444
No 10
>d1f1fa_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Arthrospira maxima [TaxId: 129910]}
Probab=6.41 E-value=2.1e+02 Score=15.87 Aligned_cols=19 Identities=5% Similarity=0.267 Sum_probs=15.2
Q ss_pred CCCCHHHHHHhhhccHHHHHHHH
Q 032675 84 NKYTQEELILMKTQDIGYILQKL 106 (136)
Q Consensus 84 ~~~t~eq~klmkTQDl~Yv~~kr 106 (136)
..||++|+..+-+ ||....
T Consensus 66 ~~Lsd~ei~~v~a----Yi~~~a 84 (88)
T d1f1fa_ 66 GRLSPLQIEDVAA----YVVDQA 84 (88)
T ss_dssp TTSCHHHHHHHHH----HHHHHH
T ss_pred CCCCHHHHHHHHH----HHHHHH
Confidence 4699999998877 997643
Done!