BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032677
(136 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CJJ|A Chain A, Crystal Structure Of The Myb Domain Of The Rad
Transcription Factor From Antirrhinum Majus
Length = 93
Score = 66.6 bits (161), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 44/63 (69%)
Query: 24 WNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEALVHDVYEIDSGRVEL 83
W+ E+K FE AL ++ +++PDRW +A + G++ EV++HYE LV D+ I+SG+V
Sbjct: 11 WSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGKVPF 70
Query: 84 PSY 86
P+Y
Sbjct: 71 PNY 73
>pdb|2M2E|A Chain A, Solution Nmr Structure Of The Sant Domain Of Human
Dnajc2, Northeast Structural Genomics Consortium Target
Hr8254a
Length = 73
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 31/52 (59%)
Query: 22 THWNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEALVHDV 73
T W E KL E AL +P +P+RW+KIA +PG++ + + Y+ LV V
Sbjct: 4 TPWTTEEQKLLEQALKTYPVNTPERWKKIAEAVPGRTKKDCMKRYKELVEMV 55
>pdb|4EEF|G Chain G, Crystal Structure Of The Designed Inhibitor Protein
F-Hb80.4 In Complex With The 1918 Influenza Virus
Hemagglutinin.
pdb|4EEF|H Chain H, Crystal Structure Of The Designed Inhibitor Protein
F-Hb80.4 In Complex With The 1918 Influenza Virus
Hemagglutinin.
pdb|4EEF|I Chain I, Crystal Structure Of The Designed Inhibitor Protein
F-Hb80.4 In Complex With The 1918 Influenza Virus
Hemagglutinin
Length = 74
Score = 48.9 bits (115), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 5 DIKNDDSNNNSFAMTHSTH--WNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEV 62
D K+DD + A T + W SE+ FE AL +++PDRW+K+A + G++ EV
Sbjct: 2 DYKDDDDKGSHMASTRGSGRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEV 61
Query: 63 REHYE 67
++HYE
Sbjct: 62 KKHYE 66
>pdb|2CQR|A Chain A, Solution Structure Of Rsgi Ruh-043, A Myb Dna-Binding
Domain In Human Cdna
Length = 73
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%)
Query: 24 WNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEALV 70
W +++ KL E AL +P S D W KIA +P KS + Y+ LV
Sbjct: 21 WTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLV 67
>pdb|2DIN|A Chain A, Solution Structure Of The Myb_dna-Binding Domain Of
Human Cell Division Cycle 5-Like Protein
Length = 66
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 7/59 (11%)
Query: 22 THWNRSED-KLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEALVHDVYEIDSG 79
T W+R E+ KL A +M P +W+ IA + G++A + EHYE L+ + DSG
Sbjct: 10 TEWSREEEEKLLHLAKLM-----PTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDSG 62
>pdb|2CQQ|A Chain A, Solution Structure Of Rsgi Ruh-037, A Myb Dna-Binding
Domain In Human Cdna
Length = 72
Score = 35.4 bits (80), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Query: 14 NSFAMTHSTHWNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEALVHDV 73
S + + W + ++V FP +P RW+KIA +L G+S +V + L D
Sbjct: 1 GSSGSSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQL-KDS 58
Query: 74 YEIDSGRVELPSYA 87
G V PS
Sbjct: 59 VTCSPGMVSGPSSG 72
>pdb|2YUM|A Chain A, Solution Structure Of The Myb-Like Dna-Binding Domain Of
Human Zzz3 Protein
Length = 75
Score = 32.0 bits (71), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 24 WNRSEDKLFEHALVMFPEESPD--RWQKIASQLPGKSAVEVREHYE 67
W E K E L+ +P E + RWQKIA +L ++A +V +
Sbjct: 11 WTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQ 56
>pdb|1TRK|A Chain A, Refined Structure Of Transketolase From Saccharomyces
Cerevisiae At 2.0 Angstroms Resolution
pdb|1TRK|B Chain B, Refined Structure Of Transketolase From Saccharomyces
Cerevisiae At 2.0 Angstroms Resolution
pdb|1NGS|A Chain A, Complex Of Transketolase With Thiamin Diphosphate, Ca2+
And Acceptor Substrate Erythrose-4-phosphate
pdb|1NGS|B Chain B, Complex Of Transketolase With Thiamin Diphosphate, Ca2+
And Acceptor Substrate Erythrose-4-phosphate
pdb|1GPU|A Chain A, Transketolase Complex With Reaction Intermediate
pdb|1GPU|B Chain B, Transketolase Complex With Reaction Intermediate
Length = 680
Score = 29.6 bits (65), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 42/104 (40%), Gaps = 25/104 (24%)
Query: 25 NRSEDKLFEHALVMFPEESPDRWQKIASQLPGK------------SAVEVREHYEALVHD 72
N +KLF FPE + ++++ QLP SAV R+ E ++ D
Sbjct: 309 NNKWNKLFSEYQKKFPELGAELARRLSGQLPANWESKLPTYTAKDSAVATRKLSETVLED 368
Query: 73 VYEIDSGRVELPSYADDSDWDSPSQIS-------FAPKSTKHGD 109
VY +LP S +PS ++ F P S+ G+
Sbjct: 369 VYN------QLPELIGGSADLTPSNLTRWKEALDFQPPSSGSGN 406
>pdb|1AY0|A Chain A, Identification Of Catalytically Important Residues In
Yeast Transketolase
pdb|1AY0|B Chain B, Identification Of Catalytically Important Residues In
Yeast Transketolase
Length = 680
Score = 29.6 bits (65), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 42/104 (40%), Gaps = 25/104 (24%)
Query: 25 NRSEDKLFEHALVMFPEESPDRWQKIASQLPGK------------SAVEVREHYEALVHD 72
N +KLF FPE + ++++ QLP SAV R+ E ++ D
Sbjct: 309 NNKWNKLFSEYQKKFPELGAELARRLSGQLPANWESKLPTYTAKDSAVATRKLSETVLED 368
Query: 73 VYEIDSGRVELPSYADDSDWDSPSQIS-------FAPKSTKHGD 109
VY +LP S +PS ++ F P S+ G+
Sbjct: 369 VYN------QLPELIGGSADLTPSNLTRWKEALDFQPPSSGSGN 406
>pdb|1TKA|A Chain A, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKA|B Chain B, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKB|A Chain A, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKB|B Chain B, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKC|A Chain A, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKC|B Chain B, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
Length = 678
Score = 29.6 bits (65), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 42/104 (40%), Gaps = 25/104 (24%)
Query: 25 NRSEDKLFEHALVMFPEESPDRWQKIASQLPGK------------SAVEVREHYEALVHD 72
N +KLF FPE + ++++ QLP SAV R+ E ++ D
Sbjct: 307 NNKWNKLFSEYQKKFPELGAELARRLSGQLPANWESKLPTYTAKDSAVATRKLSETVLED 366
Query: 73 VYEIDSGRVELPSYADDSDWDSPSQIS-------FAPKSTKHGD 109
VY +LP S +PS ++ F P S+ G+
Sbjct: 367 VYN------QLPELIGGSADLTPSNLTRWKEALDFQPPSSGSGN 404
>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1
pdb|1H89|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex2
Length = 159
Score = 29.3 bits (64), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 53/126 (42%), Gaps = 18/126 (14%)
Query: 22 THWNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEALVHD-------VY 74
T W R ED+ + + + D W+ IA+ LP ++ V+ + ++ +++
Sbjct: 7 TRWTREEDEKLKK---LVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTK 63
Query: 75 EIDSGRVELPSYADDSDWDSPSQ-------ISFAPKSTKHGDPERKKGTPWTEEEHKLFL 127
E D ++L W ++ + H +PE KK T WTEEE ++
Sbjct: 64 EEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKK-TSWTEEEDRIIY 122
Query: 128 IGLKKI 133
K++
Sbjct: 123 QAHKRL 128
Score = 27.3 bits (59), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 22 THWNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEALV 70
T W ED++ A + +RW +IA LPG++ ++ H+ + +
Sbjct: 111 TSWTEEEDRIIYQA----HKRLGNRWAEIAKLLPGRTDNAIKNHWNSTM 155
>pdb|1MBE|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
pdb|1MBF|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
Length = 53
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/50 (24%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 22 THWNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEALVH 71
T W R ED+ + + + D W+ IA+ LP ++ V+ + ++ +++
Sbjct: 4 TRWTREEDEKLKK---LVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLN 50
>pdb|1GUU|A Chain A, Crystal Structure Of C-Myb R1
Length = 52
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/50 (24%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 22 THWNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEALVH 71
T W R ED+ + + + D W+ IA+ LP ++ V+ + ++ +++
Sbjct: 4 TRWTREEDEKLKK---LVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLN 50
>pdb|3NE9|A Chain A, Chronobacterium Ammoiniagenes Apo-Acps Strucutre
pdb|3NE9|B Chain B, Chronobacterium Ammoiniagenes Apo-Acps Strucutre
pdb|3NE9|C Chain C, Chronobacterium Ammoiniagenes Apo-Acps Strucutre
pdb|3NFD|A Chain A, Chronobacterium Ammoniagenes Acps-Coa Complex
pdb|3NFD|B Chain B, Chronobacterium Ammoniagenes Acps-Coa Complex
pdb|3NFD|C Chain C, Chronobacterium Ammoniagenes Acps-Coa Complex
pdb|3NFD|D Chain D, Chronobacterium Ammoniagenes Acps-Coa Complex
pdb|3NFD|E Chain E, Chronobacterium Ammoniagenes Acps-Coa Complex
pdb|3NFD|F Chain F, Chronobacterium Ammoniagenes Acps-Coa Complex
Length = 153
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 19/74 (25%)
Query: 10 DSNNNSFAMTHSTH--------------WNRS---EDKLFEHALVMFPEES--PDRWQKI 50
D+ N+S A + + H W+++ + + E LV F E PDRW ++
Sbjct: 52 DATNSSLAGSRTEHLAGRWAAKEAFIKAWSQAIYGKPPVIEPDLVNFAEIEVLPDRWGRV 111
Query: 51 ASQLPGKSAVEVRE 64
A QL G+ A +++E
Sbjct: 112 ALQLKGEVAAKLQE 125
>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized
Average Structure
pdb|1IDZ|A Chain A, Structure Of Myb Transforming Protein, Nmr, 20
Structures
Length = 54
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 22 THWNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEALV 70
T W ED++ A + +RW +IA LPG++ ++ H+ + +
Sbjct: 6 TSWTEEEDRILYQA----HKRLGNRWAEIAKLLPGRTDNAIKNHWNSTM 50
>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
pdb|1MBK|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
Length = 53
Score = 27.7 bits (60), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 22 THWNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEALV 70
T W ED++ A + +RW +IA LPG++ ++ H+ + +
Sbjct: 4 TSWTEEEDRIIYQA----HKRLGNRWAEIAKLLPGRTDNAIKNHWNSTM 48
>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3,
Nmr, 32 Structures
Length = 110
Score = 27.7 bits (60), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 6/48 (12%)
Query: 24 WNRSEDKL-FEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEALV 70
W ED++ FE V+ +RW +IA LPG++ V+ H+ + +
Sbjct: 62 WTEEEDRIIFEAHKVL-----GNRWAEIAKLLPGRTDNAVKNHWNSTI 104
>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3
Length = 128
Score = 27.3 bits (59), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 22 THWNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEALV 70
T W ED++ A +RW +IA LPG++ V+ H+ + +
Sbjct: 80 TSWTEEEDRIIYQAHKRLG----NRWAEIAKLLPGRTDNAVKNHWNSTM 124
>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
pdb|1MSF|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
Length = 105
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 22 THWNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEALV 70
T W ED++ A + +RW +IA LPG++ ++ H+ + +
Sbjct: 57 TSWTEEEDRIIYQA----HKRLGNRWAEIAKLLPGRTDNAIKNHWNSTM 101
>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3
Length = 105
Score = 26.9 bits (58), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 22 THWNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEALV 70
T W ED++ A + +RW +IA LPG++ ++ H+ + +
Sbjct: 57 TSWTEEEDRIIYQA----HKRLGNRWAEIAKLLPGRTDNAIKNHWNSTM 101
>pdb|1WGX|A Chain A, Solution Structure Of Rsgi Ruh-022, A Myb Dna-Binding
Domain In Human Cdna
Length = 73
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/43 (25%), Positives = 19/43 (44%)
Query: 24 WNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHY 66
WN E + A P+ P W ++A+ + +S E + Y
Sbjct: 11 WNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKY 53
>pdb|3OOO|A Chain A, The Structure Of A Proline Dipeptidase From Streptococcus
Agalactiae 2603v
pdb|3OOO|B Chain B, The Structure Of A Proline Dipeptidase From Streptococcus
Agalactiae 2603v
Length = 132
Score = 25.8 bits (55), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 42 ESPDRWQKIASQLPGKSAVEVREHYEAL 69
+S + WQKIAS LP S +V ++ L
Sbjct: 78 DSENPWQKIASNLPSFSVSKVLAEFDNL 105
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.129 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,623,897
Number of Sequences: 62578
Number of extensions: 188921
Number of successful extensions: 437
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 418
Number of HSP's gapped (non-prelim): 42
length of query: 136
length of database: 14,973,337
effective HSP length: 88
effective length of query: 48
effective length of database: 9,466,473
effective search space: 454390704
effective search space used: 454390704
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 46 (22.3 bits)