Query 032677
Match_columns 136
No_of_seqs 149 out of 675
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 06:50:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032677.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032677hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cjj_A Radialis; plant develop 99.9 5.7E-25 1.9E-29 152.1 8.4 73 16-88 3-75 (93)
2 2cqq_A RSGI RUH-037, DNAJ homo 99.9 1E-24 3.4E-29 144.4 8.3 69 16-86 3-71 (72)
3 4eef_G F-HB80.4, designed hema 99.8 1.1E-21 3.9E-26 129.6 0.4 64 5-68 2-67 (74)
4 1wgx_A KIAA1903 protein; MYB D 99.8 1.3E-19 4.4E-24 120.1 6.5 55 17-71 4-58 (73)
5 2cqr_A RSGI RUH-043, DNAJ homo 99.8 2.6E-19 8.9E-24 118.7 7.3 58 17-74 14-71 (73)
6 2k9n_A MYB24; R2R3 domain, DNA 99.7 1.2E-17 4.2E-22 116.8 8.8 72 22-135 2-73 (107)
7 1gv2_A C-MYB, MYB proto-oncoge 99.7 1.7E-17 5.7E-22 115.4 8.4 73 21-135 4-76 (105)
8 1h8a_C AMV V-MYB, MYB transfor 99.7 1.1E-16 3.6E-21 115.1 10.5 74 20-135 26-99 (128)
9 3osg_A MYB21; transcription-DN 99.7 1.2E-16 4.1E-21 114.8 9.9 74 19-135 9-82 (126)
10 3zqc_A MYB3; transcription-DNA 99.7 1.4E-16 4.8E-21 115.1 6.5 72 22-135 3-74 (131)
11 2yum_A ZZZ3 protein, zinc fing 99.6 1.4E-15 4.8E-20 100.2 8.1 67 17-86 4-72 (75)
12 1h89_C C-MYB, MYB proto-oncoge 99.6 2.7E-15 9.2E-20 111.2 8.9 73 21-135 58-130 (159)
13 2dim_A Cell division cycle 5-l 99.6 2E-15 7E-20 98.3 5.9 49 20-71 8-56 (70)
14 2yus_A SWI/SNF-related matrix- 99.6 2.1E-15 7.3E-20 101.0 4.8 58 20-81 17-75 (79)
15 1h89_C C-MYB, MYB proto-oncoge 99.6 1.3E-15 4.4E-20 112.9 3.2 73 21-135 6-78 (159)
16 1x41_A Transcriptional adaptor 99.5 2.5E-14 8.6E-19 90.7 6.5 51 17-70 4-54 (60)
17 2d9a_A B-MYB, MYB-related prot 99.5 1.4E-13 4.7E-18 87.0 6.9 51 18-71 5-55 (60)
18 2din_A Cell division cycle 5-l 99.5 1.1E-13 3.7E-18 89.1 6.5 55 21-80 9-63 (66)
19 1guu_A C-MYB, MYB proto-oncoge 99.5 9.8E-14 3.4E-18 85.2 5.9 48 21-71 3-50 (52)
20 2elk_A SPCC24B10.08C protein; 99.4 2.8E-13 9.7E-18 85.4 6.9 47 21-70 9-56 (58)
21 1gvd_A MYB proto-oncogene prot 99.4 1.5E-13 5.1E-18 84.5 5.0 48 21-71 3-50 (52)
22 3sjm_A Telomeric repeat-bindin 99.4 5.1E-13 1.7E-17 86.0 6.3 49 20-71 10-60 (64)
23 2cu7_A KIAA1915 protein; nucle 99.4 6.9E-13 2.4E-17 86.8 6.9 49 19-71 7-55 (72)
24 1w0t_A Telomeric repeat bindin 99.4 6.1E-13 2.1E-17 82.2 6.0 47 21-70 2-50 (53)
25 1ity_A TRF1; helix-turn-helix, 99.3 3.2E-12 1.1E-16 82.9 6.9 51 18-71 7-59 (69)
26 2eqr_A N-COR1, N-COR, nuclear 99.3 7.7E-12 2.6E-16 79.5 6.2 46 20-69 11-56 (61)
27 2juh_A Telomere binding protei 99.2 6.1E-11 2.1E-15 85.2 8.6 79 20-134 16-98 (121)
28 1ofc_X ISWI protein; nuclear p 99.2 3.4E-11 1.2E-15 98.2 7.4 103 22-135 111-232 (304)
29 1gv2_A C-MYB, MYB proto-oncoge 99.1 4.5E-11 1.5E-15 82.6 5.2 47 20-70 55-101 (105)
30 2k9n_A MYB24; R2R3 domain, DNA 99.1 7E-11 2.4E-15 82.3 6.1 49 21-73 53-101 (107)
31 2ltp_A Nuclear receptor corepr 98.7 7.6E-12 2.6E-16 85.2 0.0 48 20-71 15-62 (89)
32 2llk_A Cyclin-D-binding MYB-li 99.1 5.8E-11 2E-15 78.4 4.2 46 21-71 23-68 (73)
33 3osg_A MYB21; transcription-DN 99.1 1.3E-10 4.3E-15 83.2 5.5 47 21-71 62-108 (126)
34 2ckx_A NGTRF1, telomere bindin 99.0 3E-10 1E-14 76.6 6.0 47 22-71 1-51 (83)
35 1h8a_C AMV V-MYB, MYB transfor 99.0 1.6E-10 5.6E-15 82.6 4.4 47 20-70 78-124 (128)
36 2roh_A RTBP1, telomere binding 99.0 1.1E-09 3.6E-14 78.8 8.6 49 20-71 30-82 (122)
37 3zqc_A MYB3; transcription-DNA 99.0 4.2E-10 1.4E-14 80.9 5.2 47 21-71 54-100 (131)
38 2yqk_A Arginine-glutamic acid 98.9 2.8E-09 9.5E-14 68.1 6.7 47 20-70 8-55 (63)
39 2crg_A Metastasis associated p 98.9 5.4E-09 1.8E-13 68.2 6.7 48 19-70 6-54 (70)
40 2aje_A Telomere repeat-binding 98.8 3.8E-09 1.3E-13 74.1 5.4 49 20-71 12-64 (105)
41 1ign_A Protein (RAP1); RAP1,ye 98.8 1.4E-08 4.6E-13 80.4 8.8 102 21-132 8-111 (246)
42 1x58_A Hypothetical protein 49 98.8 9.4E-09 3.2E-13 65.7 6.1 52 15-70 2-56 (62)
43 2iw5_B Protein corest, REST co 98.8 7.9E-09 2.7E-13 81.1 6.0 56 11-70 123-178 (235)
44 4a69_C Nuclear receptor corepr 98.6 5.1E-08 1.7E-12 66.9 6.0 45 21-69 43-87 (94)
45 2xag_B REST corepressor 1; ami 98.6 3.9E-08 1.3E-12 84.4 6.1 45 20-68 188-232 (482)
46 4b4c_A Chromodomain-helicase-D 98.6 6.2E-07 2.1E-11 68.3 11.7 51 21-72 7-59 (211)
47 2eqr_A N-COR1, N-COR, nuclear 98.4 2.4E-07 8.2E-12 58.5 4.5 29 108-136 5-33 (61)
48 3hm5_A DNA methyltransferase 1 98.3 2.6E-06 8.8E-11 58.4 6.9 49 22-74 31-84 (93)
49 1ug2_A 2610100B20RIK gene prod 98.2 8.1E-06 2.8E-10 55.7 7.6 60 15-75 27-86 (95)
50 2xag_B REST corepressor 1; ami 98.1 3.7E-06 1.2E-10 72.2 6.1 47 19-69 378-424 (482)
51 1fex_A TRF2-interacting telome 98.1 1.1E-05 3.8E-10 50.7 6.4 50 21-70 2-57 (59)
52 2yqk_A Arginine-glutamic acid 98.0 7.4E-06 2.5E-10 52.0 4.3 23 114-136 8-30 (63)
53 2yus_A SWI/SNF-related matrix- 97.9 1.5E-05 5.1E-10 52.8 5.1 25 111-135 14-38 (79)
54 2lr8_A CAsp8-associated protei 97.1 1.9E-06 6.5E-11 55.9 0.0 56 15-72 8-63 (70)
55 2crg_A Metastasis associated p 97.8 1.7E-05 5.8E-10 51.4 4.1 25 112-136 5-29 (70)
56 2y9y_A Imitation switch protei 97.7 0.00034 1.2E-08 58.3 10.4 46 22-70 124-170 (374)
57 4iej_A DNA methyltransferase 1 97.6 0.00027 9.1E-09 48.3 7.1 50 22-75 31-85 (93)
58 4eef_G F-HB80.4, designed hema 97.5 2.2E-05 7.4E-10 51.6 0.9 24 113-136 18-41 (74)
59 2cqr_A RSGI RUH-043, DNAJ homo 97.4 0.00016 5.4E-09 47.3 4.3 22 115-136 18-39 (73)
60 2cqq_A RSGI RUH-037, DNAJ homo 97.4 0.00012 4.1E-09 47.7 3.6 22 115-136 8-29 (72)
61 2cu7_A KIAA1915 protein; nucle 97.3 0.00027 9.3E-09 45.4 4.2 20 116-135 10-29 (72)
62 1wgx_A KIAA1903 protein; MYB D 97.3 0.00018 6.3E-09 47.1 3.1 21 116-136 9-29 (73)
63 2ebi_A DNA binding protein GT- 97.2 0.00012 4.2E-09 48.5 1.9 58 21-78 4-71 (86)
64 2iw5_B Protein corest, REST co 97.2 0.00037 1.2E-08 54.7 4.4 24 113-136 131-154 (235)
65 1w0t_A Telomeric repeat bindin 97.2 0.00035 1.2E-08 42.3 3.4 20 116-135 3-22 (53)
66 3sjm_A Telomeric repeat-bindin 97.1 0.00037 1.3E-08 44.1 3.4 22 115-136 11-32 (64)
67 2yum_A ZZZ3 protein, zinc fing 97.1 0.00041 1.4E-08 44.7 3.7 20 116-135 9-28 (75)
68 1x58_A Hypothetical protein 49 97.1 0.00036 1.2E-08 44.3 3.2 21 115-135 8-28 (62)
69 1ity_A TRF1; helix-turn-helix, 97.1 0.00062 2.1E-08 43.3 4.1 24 112-135 7-30 (69)
70 2roh_A RTBP1, telomere binding 97.0 0.00074 2.5E-08 48.2 4.8 27 110-136 26-52 (122)
71 4a69_C Nuclear receptor corepr 97.0 0.00039 1.3E-08 47.3 3.1 23 114-136 42-64 (94)
72 2elk_A SPCC24B10.08C protein; 97.0 0.00045 1.5E-08 42.7 3.0 20 116-135 10-29 (58)
73 1guu_A C-MYB, MYB proto-oncoge 97.0 0.00059 2E-08 40.9 3.2 21 116-136 4-24 (52)
74 1x41_A Transcriptional adaptor 96.9 0.00064 2.2E-08 42.2 3.3 20 116-135 9-28 (60)
75 1gvd_A MYB proto-oncogene prot 96.9 0.0009 3.1E-08 40.1 3.4 20 116-135 4-23 (52)
76 2xb0_X Chromo domain-containin 96.7 0.023 8E-07 45.3 11.4 50 21-71 3-54 (270)
77 2d9a_A B-MYB, MYB-related prot 96.4 0.0035 1.2E-07 38.5 4.0 20 116-135 9-28 (60)
78 1irz_A ARR10-B; helix-turn-hel 96.3 0.0033 1.1E-07 40.1 3.3 23 112-134 4-26 (64)
79 2dim_A Cell division cycle 5-l 96.2 0.0057 1.9E-07 38.8 4.1 21 115-135 9-29 (70)
80 1ofc_X ISWI protein; nuclear p 96.1 0.012 4.1E-07 47.8 6.4 55 20-74 211-277 (304)
81 1irz_A ARR10-B; helix-turn-hel 96.0 0.033 1.1E-06 35.4 6.9 54 20-74 6-61 (64)
82 1ign_A Protein (RAP1); RAP1,ye 95.7 0.031 1E-06 44.1 7.1 27 46-72 173-199 (246)
83 2ltp_A Nuclear receptor corepr 94.7 0.0018 6.3E-08 43.3 0.0 20 116-135 17-36 (89)
84 2din_A Cell division cycle 5-l 95.7 0.0089 3.1E-07 37.4 3.2 20 116-135 10-29 (66)
85 2llk_A Cyclin-D-binding MYB-li 95.6 0.0089 3E-07 38.8 3.2 20 116-135 24-43 (73)
86 4b4c_A Chromodomain-helicase-D 93.9 0.25 8.5E-06 36.9 7.8 54 17-73 130-197 (211)
87 2y9y_A Imitation switch protei 93.8 0.11 3.8E-06 43.2 6.0 55 20-74 227-293 (374)
88 2xb0_X Chromo domain-containin 88.8 0.46 1.6E-05 37.8 4.4 36 15-53 162-197 (270)
89 2ecc_A Homeobox and leucine zi 87.6 3.4 0.00012 26.6 7.3 54 16-70 2-55 (76)
90 2dmu_A Homeobox protein goosec 70.4 15 0.00052 22.2 6.8 50 19-69 9-58 (70)
91 3hm5_A DNA methyltransferase 1 68.2 3.3 0.00011 27.8 2.5 19 116-134 31-49 (93)
92 2dn0_A Zinc fingers and homeob 67.8 19 0.00064 22.2 7.6 50 20-70 11-60 (76)
93 2dms_A Homeobox protein OTX2; 65.3 22 0.00075 22.1 7.4 52 19-71 9-60 (80)
94 2e19_A Transcription factor 8; 63.8 22 0.00074 21.5 6.3 54 16-70 2-55 (64)
95 2e1o_A Homeobox protein PRH; D 63.8 22 0.00074 21.5 7.7 49 20-69 10-58 (70)
96 2cuf_A FLJ21616 protein; homeo 62.8 25 0.00086 22.7 6.1 51 20-71 10-75 (95)
97 2da2_A Alpha-fetoprotein enhan 62.7 22 0.00077 21.4 7.6 51 19-70 9-59 (70)
98 3a02_A Homeobox protein arista 62.1 21 0.00072 20.8 5.6 48 21-69 3-50 (60)
99 2cue_A Paired box protein PAX6 61.8 26 0.00089 21.8 7.3 49 19-68 9-57 (80)
100 1fex_A TRF2-interacting telome 61.6 7.6 0.00026 23.5 3.1 18 116-133 3-20 (59)
101 2dmq_A LIM/homeobox protein LH 61.4 26 0.00089 21.6 7.6 50 19-69 9-58 (80)
102 2cra_A Homeobox protein HOX-B1 60.9 25 0.00085 21.2 7.4 50 20-70 10-59 (70)
103 1du6_A PBX1, homeobox protein 60.1 24 0.00082 20.8 5.3 49 19-68 5-56 (64)
104 2da1_A Alpha-fetoprotein enhan 59.6 26 0.00089 21.0 7.4 50 20-70 10-59 (70)
105 2djn_A Homeobox protein DLX-5; 58.4 28 0.00095 21.0 7.1 50 20-70 10-59 (70)
106 2r5y_A Homeotic protein sex co 57.8 33 0.0011 21.7 6.1 50 19-69 30-79 (88)
107 2da3_A Alpha-fetoprotein enhan 57.3 30 0.001 21.2 5.5 49 21-70 21-69 (80)
108 1ig7_A Homeotic protein MSX-1; 57.0 26 0.00088 20.2 6.9 47 21-68 4-50 (58)
109 2hdd_A Protein (engrailed home 55.8 28 0.00097 20.3 5.8 47 21-68 7-53 (61)
110 1akh_A Protein (mating-type pr 55.7 28 0.00096 20.2 5.4 48 20-68 8-55 (61)
111 1jgg_A Segmentation protein EV 54.8 29 0.001 20.2 6.2 47 21-68 5-51 (60)
112 2hzd_A Transcriptional enhance 54.8 36 0.0012 22.2 5.6 52 20-71 5-73 (82)
113 2dmt_A Homeobox protein BARH-l 54.3 36 0.0012 21.1 7.1 50 20-70 20-69 (80)
114 1mnm_C Protein (MAT alpha-2 tr 54.0 38 0.0013 21.3 6.1 51 17-68 27-80 (87)
115 1ug2_A 2610100B20RIK gene prod 53.8 12 0.00041 25.2 3.2 21 114-134 32-52 (95)
116 1bw5_A ISL-1HD, insulin gene e 52.8 34 0.0012 20.3 6.1 49 20-69 6-54 (66)
117 2k40_A Homeobox expressed in E 52.5 35 0.0012 20.3 5.9 49 21-70 5-53 (67)
118 1zq3_P PRD-4, homeotic bicoid 51.9 36 0.0012 20.4 5.9 49 20-69 5-53 (68)
119 2da6_A Hepatocyte nuclear fact 51.1 50 0.0017 22.2 6.1 50 20-69 9-78 (102)
120 1fjl_A Paired protein; DNA-bin 50.0 43 0.0015 20.7 6.1 49 20-69 21-69 (81)
121 2h1k_A IPF-1, pancreatic and d 49.6 38 0.0013 19.9 6.1 49 20-69 6-54 (63)
122 2hi3_A Homeodomain-only protei 48.3 44 0.0015 20.3 6.4 52 18-70 3-55 (73)
123 1k61_A Mating-type protein alp 48.0 39 0.0013 19.6 5.9 47 22-69 3-52 (60)
124 1yz8_P Pituitary homeobox 2; D 47.9 42 0.0014 20.0 6.4 49 20-69 6-54 (68)
125 2da4_A Hypothetical protein DK 47.4 35 0.0012 21.1 4.6 50 20-70 11-64 (80)
126 2m0c_A Homeobox protein arista 46.2 47 0.0016 20.0 7.1 56 15-71 7-62 (75)
127 2ly9_A Zinc fingers and homeob 45.7 48 0.0016 20.0 6.3 52 19-71 8-59 (74)
128 1kkx_A Transcription regulator 45.7 40 0.0014 23.1 5.1 44 31-74 52-99 (123)
129 2ys8_A RAB-related GTP-binding 42.1 64 0.0022 20.4 6.6 45 21-71 9-53 (90)
130 3a03_A T-cell leukemia homeobo 42.1 48 0.0016 19.0 5.4 46 22-68 2-47 (56)
131 3i4p_A Transcriptional regulat 41.8 43 0.0015 23.3 4.8 40 28-71 4-43 (162)
132 1nk2_P Homeobox protein VND; h 41.1 60 0.0021 19.8 6.9 49 20-69 12-60 (77)
133 2vi6_A Homeobox protein nanog; 40.1 55 0.0019 19.0 5.7 47 21-68 7-53 (62)
134 1qbj_A Protein (double-strande 39.4 48 0.0016 21.0 4.3 42 29-71 12-53 (81)
135 1qgp_A Protein (double strande 39.0 47 0.0016 20.6 4.2 46 25-71 12-57 (77)
136 1uhs_A HOP, homeodomain only p 38.6 64 0.0022 19.4 6.2 50 20-70 4-54 (72)
137 2dmn_A Homeobox protein TGIF2L 38.2 72 0.0025 19.9 6.8 49 20-69 10-61 (83)
138 2l7z_A Homeobox protein HOX-A1 37.0 69 0.0024 19.4 6.4 50 20-70 10-59 (73)
139 2da5_A Zinc fingers and homeob 36.6 72 0.0025 19.4 6.9 50 20-70 10-59 (75)
140 1ahd_P Antennapedia protein mu 35.9 70 0.0024 19.1 6.6 49 21-70 6-54 (68)
141 3kw6_A 26S protease regulatory 35.6 53 0.0018 19.9 4.0 40 30-69 10-49 (78)
142 1b72_A Protein (homeobox prote 34.0 92 0.0032 19.9 5.8 48 21-69 38-85 (97)
143 2lm1_A Lysine-specific demethy 33.9 72 0.0025 20.9 4.7 32 45-76 66-101 (107)
144 2d5v_A Hepatocyte nuclear fact 33.8 1.1E+02 0.0037 21.4 6.0 50 20-70 100-149 (164)
145 1b72_B Protein (PBX1); homeodo 33.4 87 0.003 19.4 6.0 48 21-69 5-55 (87)
146 1ftt_A TTF-1 HD, thyroid trans 33.0 79 0.0027 18.8 5.9 49 21-70 6-54 (68)
147 3c57_A Two component transcrip 32.0 96 0.0033 19.5 5.2 47 21-74 25-71 (95)
148 2dk8_A DNA-directed RNA polyme 31.9 1E+02 0.0035 19.8 7.0 39 31-71 18-56 (81)
149 3k2a_A Homeobox protein MEIS2; 31.7 85 0.0029 18.8 5.3 49 21-70 2-53 (67)
150 1puf_B PRE-B-cell leukemia tra 31.6 86 0.0029 18.8 6.0 49 21-70 5-56 (73)
151 2jxj_A Histone demethylase jar 30.9 28 0.00096 22.5 2.2 30 45-74 58-91 (96)
152 2dmp_A Zinc fingers and homeob 30.9 1E+02 0.0035 19.5 6.6 50 21-71 17-66 (89)
153 3aji_B S6C, proteasome (prosom 30.6 67 0.0023 19.6 3.9 39 30-68 8-46 (83)
154 3cz6_A DNA-binding protein RAP 30.5 40 0.0014 24.9 3.1 17 17-33 110-126 (168)
155 1x2n_A Homeobox protein pknox1 29.0 96 0.0033 18.6 7.0 50 19-69 9-61 (73)
156 3nau_A Zinc fingers and homeob 28.8 1.1E+02 0.0036 19.0 4.7 44 24-68 11-54 (66)
157 2kt0_A Nanog, homeobox protein 28.3 1.1E+02 0.0036 18.8 7.8 49 21-70 26-74 (84)
158 2e1c_A Putative HTH-type trans 27.8 1.2E+02 0.004 21.4 5.3 43 24-71 25-67 (171)
159 1au7_A Protein PIT-1, GHF-1; c 27.7 1.5E+02 0.0052 20.5 6.1 49 20-69 90-138 (146)
160 3nar_A ZHX1, zinc fingers and 27.6 1.2E+02 0.0042 19.3 5.9 49 21-70 29-77 (96)
161 1b8i_A Ultrabithorax, protein 27.4 1.1E+02 0.0038 18.8 5.8 49 20-69 23-71 (81)
162 2da7_A Zinc finger homeobox pr 27.1 1.2E+02 0.0042 19.1 5.4 45 26-71 14-58 (71)
163 1hbk_A ACBP, acyl-COA binding 27.0 61 0.0021 20.9 3.3 21 54-74 64-84 (89)
164 1wi3_A DNA-binding protein SAT 26.3 1.3E+02 0.0043 19.1 6.9 52 18-70 8-60 (71)
165 1puf_A HOX-1.7, homeobox prote 26.3 1.1E+02 0.0039 18.5 6.7 48 20-68 16-63 (77)
166 2li6_A SWI/SNF chromatin-remod 25.9 33 0.0011 23.1 1.9 27 45-71 71-97 (116)
167 1e3o_C Octamer-binding transcr 25.6 1.7E+02 0.006 20.4 6.0 48 21-69 105-152 (160)
168 2p1m_A SKP1-like protein 1A; F 24.9 41 0.0014 23.7 2.3 42 25-66 92-137 (160)
169 2cb8_A Acyl-COA-binding protei 24.2 79 0.0027 20.3 3.4 21 54-74 62-82 (87)
170 2cxy_A BAF250B subunit, HBAF25 24.0 1.3E+02 0.0045 20.3 4.8 41 45-85 73-118 (125)
171 2dbb_A Putative HTH-type trans 23.8 1.7E+02 0.0057 19.6 6.1 42 25-71 8-49 (151)
172 1fs1_B SKP1, cyclin A/CDK2-ass 23.7 35 0.0012 23.6 1.7 20 48-67 115-134 (141)
173 3rkq_A Homeobox protein NKX-2. 23.6 1.1E+02 0.0036 17.2 5.9 47 21-68 6-52 (58)
174 2xsd_C POU domain, class 3, tr 23.2 1.7E+02 0.0057 20.7 5.4 49 21-70 103-151 (164)
175 3d1n_I POU domain, class 6, tr 23.2 1.9E+02 0.0064 19.9 6.1 49 20-69 96-144 (151)
176 1st7_A ACBP, acyl-COA-binding 22.6 64 0.0022 20.7 2.7 27 47-74 55-81 (86)
177 3epy_A Acyl-COA-binding domain 22.5 89 0.003 20.2 3.4 21 54-74 64-84 (89)
178 2lbb_A Acyl COA binding protei 22.3 83 0.0028 20.8 3.3 27 47-74 65-91 (96)
179 2krk_A 26S protease regulatory 22.1 65 0.0022 20.3 2.7 39 30-68 18-56 (86)
180 2jrz_A Histone demethylase jar 21.9 78 0.0027 21.3 3.2 46 31-76 44-97 (117)
181 1le8_B Mating-type protein alp 21.8 1.5E+02 0.0051 18.3 5.9 48 22-70 7-57 (83)
182 1i1g_A Transcriptional regulat 21.7 1.8E+02 0.006 19.0 5.1 37 31-71 8-44 (141)
183 2cyy_A Putative HTH-type trans 21.6 1.9E+02 0.0065 19.4 5.3 42 25-71 6-47 (151)
184 1x2m_A LAG1 longevity assuranc 21.6 1.3E+02 0.0045 18.2 3.9 42 25-69 8-52 (64)
185 3v7d_A Suppressor of kinetocho 21.5 50 0.0017 23.7 2.2 43 25-67 100-146 (169)
186 1je8_A Nitrate/nitrite respons 21.4 1.3E+02 0.0044 18.3 4.0 44 21-71 19-62 (82)
187 2cop_A Acyl-coenzyme A binding 20.6 85 0.0029 21.1 3.1 27 47-74 62-88 (109)
188 1wh5_A ZF-HD homeobox family p 20.5 1.6E+02 0.0056 18.2 7.9 47 21-68 21-71 (80)
189 2pn6_A ST1022, 150AA long hypo 20.4 1.5E+02 0.0052 19.7 4.5 38 30-71 6-43 (150)
190 3ulq_B Transcriptional regulat 20.4 1.7E+02 0.0058 18.3 4.7 44 21-71 27-70 (90)
191 3a01_A Homeodomain-containing 20.4 1.7E+02 0.0059 18.5 7.9 50 20-70 20-69 (93)
192 2kk0_A AT-rich interactive dom 20.3 1.3E+02 0.0043 21.1 4.1 36 45-80 86-126 (145)
193 2p64_A F-BOX/WD repeat protein 20.3 73 0.0025 19.0 2.4 15 117-131 18-32 (52)
No 1
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.92 E-value=5.7e-25 Score=152.12 Aligned_cols=73 Identities=37% Similarity=0.776 Sum_probs=61.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhCCCCCHHHHHHHHHHHHHhHhhhccCCccCCCCCC
Q 032677 16 FAMTHSTHWNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEALVHDVYEIDSGRVELPSYAD 88 (136)
Q Consensus 16 ~~~~~~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~l~~dv~~ie~g~v~~p~~~~ 88 (136)
++.++.+.||.|||++|+.||++|+.++++||++||++|||||..||+.||..|++||..||+|.+|+|.|..
T Consensus 3 ~~~~~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv~~iesg~vp~P~y~~ 75 (93)
T 2cjj_A 3 STRGSGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGKVPFPNYRT 75 (93)
T ss_dssp -----CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHSSCCC-----
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Confidence 4455678899999999999999999999999999999999999999999999999999999999999999964
No 2
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.91 E-value=1e-24 Score=144.44 Aligned_cols=69 Identities=29% Similarity=0.541 Sum_probs=64.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhCCCCCHHHHHHHHHHHHHhHhhhccCCccCCCC
Q 032677 16 FAMTHSTHWNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEALVHDVYEIDSGRVELPSY 86 (136)
Q Consensus 16 ~~~~~~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~l~~dv~~ie~g~v~~p~~ 86 (136)
++......||.||+++|++||++||.++++||++||+.| |||++||+.||+.|++|+ .|++|.||+|+|
T Consensus 3 ~~~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d~-~~~~G~vp~P~~ 71 (72)
T 2cqq_A 3 SGSSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSV-TCSPGMVSGPSS 71 (72)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHSC-CCCSCCCSCSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHhc-CccCCCCCCCCC
Confidence 445556789999999999999999999999999999998 999999999999999996 689999999998
No 3
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=99.81 E-value=1.1e-21 Score=129.61 Aligned_cols=64 Identities=36% Similarity=0.667 Sum_probs=44.2
Q ss_pred hhhcccCCCC--CCCCCCCCCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhCCCCCHHHHHHHHHH
Q 032677 5 DIKNDDSNNN--SFAMTHSTHWNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEA 68 (136)
Q Consensus 5 ~~~~~~~~~~--~~~~~~~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~ 68 (136)
+|+.+|...+ +++..++..||.+|+++||+||++||.++|+||++||+.|||||+.||+.||..
T Consensus 2 ~~~~~~~~~~~m~s~~~ss~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~~ 67 (74)
T 4eef_G 2 DYKDDDDKGSHMASTRGSGRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYEL 67 (74)
T ss_dssp --------------------CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC-
T ss_pred CccccccccceeccCCCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHHH
Confidence 4666544433 222334568999999999999999999999999999999999999999999964
No 4
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.79 E-value=1.3e-19 Score=120.10 Aligned_cols=55 Identities=20% Similarity=0.433 Sum_probs=50.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 032677 17 AMTHSTHWNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEALVH 71 (136)
Q Consensus 17 ~~~~~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~l~~ 71 (136)
+++....||.+|+++|++||+.||.++|+||++||++|||||++||++||..|+.
T Consensus 4 ~~~~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 4 GSSGDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPR 58 (73)
T ss_dssp CCCSSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 3445678999999999999999999999999999999999999999999999974
No 5
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.79 E-value=2.6e-19 Score=118.65 Aligned_cols=58 Identities=34% Similarity=0.573 Sum_probs=53.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhCCCCCHHHHHHHHHHHHHhHh
Q 032677 17 AMTHSTHWNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEALVHDVY 74 (136)
Q Consensus 17 ~~~~~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~l~~dv~ 74 (136)
+......||.+||++|+.||++|+.++++||.+||++|||||..||+.||..|++||.
T Consensus 14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~d~~ 71 (73)
T 2cqr_A 14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVSGPS 71 (73)
T ss_dssp TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHSSCC
T ss_pred cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHccc
Confidence 3445678999999999999999998889999999999999999999999999998763
No 6
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.73 E-value=1.2e-17 Score=116.82 Aligned_cols=72 Identities=17% Similarity=0.431 Sum_probs=63.4
Q ss_pred CCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhCCCCCHHHHHHHHHHHHHhHhhhccCCccCCCCCCCCCCCCCCccCCC
Q 032677 22 THWNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEALVHDVYEIDSGRVELPSYADDSDWDSPSQISFA 101 (136)
Q Consensus 22 ~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~l~~dv~~ie~g~v~~p~~~~~~~~~s~~~~~~~ 101 (136)
+.||+|||.+|..++..|+. .+|..||+.|||||..||++||.+++. |.
T Consensus 2 ~~Wt~eED~~L~~~v~~~g~---~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~------------p~---------------- 50 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRYGA---KDWIRISQLMITRNPRQCRERWNNYIN------------PA---------------- 50 (107)
T ss_dssp CSSCHHHHHHHHHHHHHHCS---SCHHHHHHHTTTSCHHHHHHHHHHHSS------------SC----------------
T ss_pred CCCCHHHHHHHHHHHHHHCC---CCHHHHhhhcCCCCHHHHHHHHHHHHc------------cc----------------
Confidence 57999999999999999985 479999999999999999999999873 21
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhCC
Q 032677 102 PKSTKHGDPERKKGTPWTEEEHKLFLIGLKKIRQ 135 (136)
Q Consensus 102 ~k~~~~~~~erkkg~pWTeeEhrlfL~gL~kyGK 135 (136)
.+ ..|||+||+.+|+.++.+||.
T Consensus 51 ----------i~-~~~WT~eEd~~L~~~~~~~G~ 73 (107)
T 2k9n_A 51 ----------LR-TDPWSPEEDMLLDQKYAEYGP 73 (107)
T ss_dssp ----------CT-TCCCCHHHHHHHHHHHHHTCS
T ss_pred ----------cc-ccccCHHHHHHHHHHHHHhCc
Confidence 11 258999999999999999995
No 7
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.72 E-value=1.7e-17 Score=115.35 Aligned_cols=73 Identities=27% Similarity=0.564 Sum_probs=63.9
Q ss_pred CCCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhCCCCCHHHHHHHHHHHHHhHhhhccCCccCCCCCCCCCCCCCCccCC
Q 032677 21 STHWNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEALVHDVYEIDSGRVELPSYADDSDWDSPSQISF 100 (136)
Q Consensus 21 ~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~l~~dv~~ie~g~v~~p~~~~~~~~~s~~~~~~ 100 (136)
.++||+|||.+|..++.+|+. .+|..||+.|||||..||++||..++. |.
T Consensus 4 k~~WT~eED~~L~~~v~~~g~---~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~------------p~--------------- 53 (105)
T 1gv2_A 4 KGPWTKEEDQRVIKLVQKYGP---KRWSVIAKHLKGRIGKQCRERWHNHLN------------PE--------------- 53 (105)
T ss_dssp CSCCCHHHHHHHHHHHHHHCT---TCHHHHHTTSTTCCHHHHHHHHHHTTC------------CC---------------
T ss_pred CCCCCHHHHHHHHHHHHHhCC---CcHHHHhhhhcCCCHHHHHHHHHhccC------------Cc---------------
Confidence 468999999999999999985 479999999999999999999999773 21
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhCC
Q 032677 101 APKSTKHGDPERKKGTPWTEEEHKLFLIGLKKIRQ 135 (136)
Q Consensus 101 ~~k~~~~~~~erkkg~pWTeeEhrlfL~gL~kyGK 135 (136)
.+ ..|||+||+.+|+.++++||.
T Consensus 54 -----------~~-~~~Wt~eEd~~L~~~~~~~G~ 76 (105)
T 1gv2_A 54 -----------VK-KTSWTEEEDRIIYQAHKRLGN 76 (105)
T ss_dssp -----------CC-CCCCCHHHHHHHHHHHHHHSS
T ss_pred -----------cc-ccCCCHHHHHHHHHHHHHhCC
Confidence 11 258999999999999999995
No 8
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.70 E-value=1.1e-16 Score=115.09 Aligned_cols=74 Identities=27% Similarity=0.572 Sum_probs=64.4
Q ss_pred CCCCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhCCCCCHHHHHHHHHHHHHhHhhhccCCccCCCCCCCCCCCCCCccC
Q 032677 20 HSTHWNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEALVHDVYEIDSGRVELPSYADDSDWDSPSQIS 99 (136)
Q Consensus 20 ~~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~l~~dv~~ie~g~v~~p~~~~~~~~~s~~~~~ 99 (136)
..++||.|||++|..++.+|+. .+|..||..|||||..||++||..++. |.
T Consensus 26 ~k~~Wt~eED~~L~~~v~~~g~---~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~------------p~-------------- 76 (128)
T 1h8a_C 26 NKGPWTKEEDQRVIEHVQKYGP---KRWSDIAKHLKGRIGKQCRERWHNHLN------------PE-------------- 76 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHTCS---CCHHHHHHHSSSCCHHHHHHHHHHTTC------------SS--------------
T ss_pred CCCCCCHHHHHHHHHHHHHHCC---CCHHHHHHHhcCCcHHHHHHHHHHhcc------------cc--------------
Confidence 3578999999999999999985 479999999999999999999999773 11
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhCC
Q 032677 100 FAPKSTKHGDPERKKGTPWTEEEHKLFLIGLKKIRQ 135 (136)
Q Consensus 100 ~~~k~~~~~~~erkkg~pWTeeEhrlfL~gL~kyGK 135 (136)
.+ ..|||+||+.+|+.++++||.
T Consensus 77 ------------~~-~~~WT~eEd~~L~~~~~~~G~ 99 (128)
T 1h8a_C 77 ------------VK-KTSWTEEEDRIIYQAHKRLGN 99 (128)
T ss_dssp ------------SC-CSCCCHHHHHHHHHHHHHHCS
T ss_pred ------------cc-cccCCHHHHHHHHHHHHHHCc
Confidence 12 258999999999999999995
No 9
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.69 E-value=1.2e-16 Score=114.83 Aligned_cols=74 Identities=24% Similarity=0.571 Sum_probs=64.5
Q ss_pred CCCCCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhCCCCCHHHHHHHHHHHHHhHhhhccCCccCCCCCCCCCCCCCCcc
Q 032677 19 THSTHWNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEALVHDVYEIDSGRVELPSYADDSDWDSPSQI 98 (136)
Q Consensus 19 ~~~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~l~~dv~~ie~g~v~~p~~~~~~~~~s~~~~ 98 (136)
...+.||.|||++|..++.+|+. +|..||+.|||||..||++||.+.+. |.
T Consensus 9 ~kk~~WT~eED~~L~~~v~~~G~----~W~~Ia~~~~~Rt~~qcr~Rw~~~l~------------p~------------- 59 (126)
T 3osg_A 9 AKKQKFTPEEDEMLKRAVAQHGS----DWKMIAATFPNRNARQCRDRWKNYLA------------PS------------- 59 (126)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHTT----CHHHHHHTCTTCCHHHHHHHHHHHTS------------TT-------------
T ss_pred CCCCCCCHHHHHHHHHHHHHhCC----CHHHHHHHcCCCCHHHHHHHHhhhcc------------cc-------------
Confidence 34678999999999999999974 79999999999999999999999873 11
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhCC
Q 032677 99 SFAPKSTKHGDPERKKGTPWTEEEHKLFLIGLKKIRQ 135 (136)
Q Consensus 99 ~~~~k~~~~~~~erkkg~pWTeeEhrlfL~gL~kyGK 135 (136)
.++ .|||+||+.+|+.++++||.
T Consensus 60 -------------~~~-~~WT~eEd~~L~~~v~~~G~ 82 (126)
T 3osg_A 60 -------------ISH-TPWTAEEDALLVQKIQEYGR 82 (126)
T ss_dssp -------------SCC-SCCCHHHHHHHHHHHHHHCS
T ss_pred -------------ccc-ccCCHHHHHHHHHHHHHHCc
Confidence 122 48999999999999999996
No 10
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.65 E-value=1.4e-16 Score=115.07 Aligned_cols=72 Identities=25% Similarity=0.432 Sum_probs=63.3
Q ss_pred CCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhCCCCCHHHHHHHHHHHHHhHhhhccCCccCCCCCCCCCCCCCCccCCC
Q 032677 22 THWNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEALVHDVYEIDSGRVELPSYADDSDWDSPSQISFA 101 (136)
Q Consensus 22 ~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~l~~dv~~ie~g~v~~p~~~~~~~~~s~~~~~~~ 101 (136)
++||.|||++|..++..|+. .+|..||..|||||..||++||.+.+. |.
T Consensus 3 g~Wt~eED~~L~~~v~~~g~---~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~------------p~---------------- 51 (131)
T 3zqc_A 3 GPFTEAEDDLIREYVKENGP---QNWPRITSFLPNRSPKQCRERWFNHLD------------PA---------------- 51 (131)
T ss_dssp SSCCHHHHHHHHHHHHHHCS---CCGGGGTTSCTTSCHHHHHHHHHHHTS------------TT----------------
T ss_pred CCCCHHHHHHHHHHHHHhCc---CCHHHHHHHHCCCCHHHHHHHHhhccC------------cc----------------
Confidence 67999999999999999985 379999999999999999999999883 21
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhCC
Q 032677 102 PKSTKHGDPERKKGTPWTEEEHKLFLIGLKKIRQ 135 (136)
Q Consensus 102 ~k~~~~~~~erkkg~pWTeeEhrlfL~gL~kyGK 135 (136)
.++ .+||.||+.+|+.++.+||.
T Consensus 52 ----------~~~-~~Wt~eEd~~L~~~~~~~G~ 74 (131)
T 3zqc_A 52 ----------VVK-HAWTPEEDETIFRNYLKLGS 74 (131)
T ss_dssp ----------CCC-SCCCHHHHHHHHHHHHHSCS
T ss_pred ----------ccC-CCCCHHHHHHHHHHHHHHCc
Confidence 122 48999999999999999995
No 11
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=1.4e-15 Score=100.18 Aligned_cols=67 Identities=25% Similarity=0.482 Sum_probs=53.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhCCCCC--ChHHHHHHHhCCCCCHHHHHHHHHHHHHhHhhhccCCccCCCC
Q 032677 17 AMTHSTHWNRSEDKLFEHALVMFPEES--PDRWQKIASQLPGKSAVEVREHYEALVHDVYEIDSGRVELPSY 86 (136)
Q Consensus 17 ~~~~~~~WT~eEdk~le~al~~~~~~~--~~rW~~IA~~vpgrt~~qv~~ry~~l~~dv~~ie~g~v~~p~~ 86 (136)
.....+.||.|||++|+.+|.+|+.++ +.+|.+||+.|||||..||+.||.+++.. .+..| +++|++
T Consensus 4 p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~--~~k~g-~~~pg~ 72 (75)
T 2yum_A 4 GSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIK--LTKAG-IPVSGP 72 (75)
T ss_dssp CCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGG--GSTTC-SCCCCS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHH--HHhcC-CCCCCC
Confidence 334457899999999999999999754 37999999999999999999999777642 33455 366655
No 12
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.60 E-value=2.7e-15 Score=111.19 Aligned_cols=73 Identities=27% Similarity=0.564 Sum_probs=63.9
Q ss_pred CCCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhCCCCCHHHHHHHHHHHHHhHhhhccCCccCCCCCCCCCCCCCCccCC
Q 032677 21 STHWNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEALVHDVYEIDSGRVELPSYADDSDWDSPSQISF 100 (136)
Q Consensus 21 ~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~l~~dv~~ie~g~v~~p~~~~~~~~~s~~~~~~ 100 (136)
.++||.|||.+|..++..|+. .+|..||..|||||..||++||..++. |.
T Consensus 58 ~~~Wt~eEd~~L~~~v~~~g~---~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~------------p~--------------- 107 (159)
T 1h89_C 58 KGPWTKEEDQRVIKLVQKYGP---KRWSVIAKHLKGRIGKQCRERWHNHLN------------PE--------------- 107 (159)
T ss_dssp CSCCCHHHHHHHHHHHHHHCS---CCHHHHHHTSTTCCHHHHHHHHHHTTC------------TT---------------
T ss_pred CCCCChHHHHHHHHHHHHhCc---ccHHHHHHHcCCCCHHHHHHHHHHHhC------------cc---------------
Confidence 578999999999999999984 479999999999999999999998763 11
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhCC
Q 032677 101 APKSTKHGDPERKKGTPWTEEEHKLFLIGLKKIRQ 135 (136)
Q Consensus 101 ~~k~~~~~~~erkkg~pWTeeEhrlfL~gL~kyGK 135 (136)
. +..|||+||+.+|+.++++||.
T Consensus 108 -----------~-~~~~WT~eEd~~L~~~~~~~g~ 130 (159)
T 1h89_C 108 -----------V-KKTSWTEEEDRIIYQAHKRLGN 130 (159)
T ss_dssp -----------S-CCSCCCHHHHHHHHHHHHHHCS
T ss_pred -----------c-cccCCChHHHHHHHHHHHHHCC
Confidence 1 1368999999999999999995
No 13
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=2e-15 Score=98.29 Aligned_cols=49 Identities=24% Similarity=0.556 Sum_probs=44.9
Q ss_pred CCCCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 032677 20 HSTHWNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEALVH 71 (136)
Q Consensus 20 ~~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~l~~ 71 (136)
..+.||.|||.+|..++.+|+. .+|..||..|||||..||++||.+++.
T Consensus 8 k~~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~ 56 (70)
T 2dim_A 8 KGGVWRNTEDEILKAAVMKYGK---NQWSRIASLLHRKSAKQCKARWYEWLD 56 (70)
T ss_dssp TTCCCCHHHHHHHHHHHHHTCS---SCHHHHHHHSTTCCHHHHHHHHHHTSC
T ss_pred CCCCCCHHHHHHHHHHHHHHCc---CCHHHHHHHhcCCCHHHHHHHHHHHcC
Confidence 4578999999999999999984 489999999999999999999999873
No 14
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.56 E-value=2.1e-15 Score=101.01 Aligned_cols=58 Identities=26% Similarity=0.479 Sum_probs=52.6
Q ss_pred CCCCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhCCCCCHHHHHHHHHHH-HHhHhhhccCCc
Q 032677 20 HSTHWNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEAL-VHDVYEIDSGRV 81 (136)
Q Consensus 20 ~~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~l-~~dv~~ie~g~v 81 (136)
....||.|||++|..||.+|+ .+|.+||++||+||..||+.||..+ ++|+..++++.-
T Consensus 17 ~~~~WT~eEd~~Ll~~v~~~G----~~W~~IA~~v~~RT~~qcr~r~~~~~i~d~~~~~~~~~ 75 (79)
T 2yus_A 17 AGREWTEQETLLLLEALEMYK----DDWNKVSEHVGSRTQDECILHFLRLPIEDPYLENSDSG 75 (79)
T ss_dssp CSCCCCHHHHHHHHHHHHHSS----SCHHHHHHHHSSCCHHHHHHHHTTSCCCCSSCCCCCCC
T ss_pred cCCCcCHHHHHHHHHHHHHhC----CCHHHHHHHcCCCCHHHHHHHHHHhcccccccccCCCC
Confidence 457899999999999999998 4899999999999999999999999 888888777753
No 15
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.55 E-value=1.3e-15 Score=112.89 Aligned_cols=73 Identities=26% Similarity=0.545 Sum_probs=29.3
Q ss_pred CCCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhCCCCCHHHHHHHHHHHHHhHhhhccCCccCCCCCCCCCCCCCCccCC
Q 032677 21 STHWNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEALVHDVYEIDSGRVELPSYADDSDWDSPSQISF 100 (136)
Q Consensus 21 ~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~l~~dv~~ie~g~v~~p~~~~~~~~~s~~~~~~ 100 (136)
.+.||.|||++|..++.+|+. .+|..||+.|||||..||++||.+++. |.
T Consensus 6 k~~Wt~eED~~L~~~v~~~g~---~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~------------p~--------------- 55 (159)
T 1h89_C 6 KTRWTREEDEKLKKLVEQNGT---DDWKVIANYLPNRTDVQCQHRWQKVLN------------PE--------------- 55 (159)
T ss_dssp ----------------------------------------CHHHHHHTTTC------------TT---------------
T ss_pred CCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHcCCCCHHHHHHHHHHccC------------CC---------------
Confidence 468999999999999999984 489999999999999999999998773 11
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhCC
Q 032677 101 APKSTKHGDPERKKGTPWTEEEHKLFLIGLKKIRQ 135 (136)
Q Consensus 101 ~~k~~~~~~~erkkg~pWTeeEhrlfL~gL~kyGK 135 (136)
.+ ..|||+||+.+|+.++++||.
T Consensus 56 -----------~~-~~~Wt~eEd~~L~~~v~~~g~ 78 (159)
T 1h89_C 56 -----------LI-KGPWTKEEDQRVIKLVQKYGP 78 (159)
T ss_dssp -----------CC-CSCCCHHHHHHHHHHHHHHCS
T ss_pred -----------cC-CCCCChHHHHHHHHHHHHhCc
Confidence 11 258999999999999999994
No 16
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.52 E-value=2.5e-14 Score=90.69 Aligned_cols=51 Identities=22% Similarity=0.382 Sum_probs=45.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhCCCCCHHHHHHHHHHHH
Q 032677 17 AMTHSTHWNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEALV 70 (136)
Q Consensus 17 ~~~~~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~l~ 70 (136)
..-....||+|||++|..++.+|+. .+|..||+.|||||..||++||..++
T Consensus 4 ~~~~~~~WT~eED~~L~~~v~~~G~---~~W~~Ia~~~~~Rt~~qcr~r~~~~l 54 (60)
T 1x41_A 4 GSSGDPSWTAQEEMALLEAVMDCGF---GNWQDVANQMCTKTKEECEKHYMKYF 54 (60)
T ss_dssp CCCCCSSSCHHHHHHHHHHHHHTCT---TCHHHHHHHHTTSCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCc---CcHHHHHHHhCCCCHHHHHHHHHHHc
Confidence 3445678999999999999999985 47999999999999999999999987
No 17
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.46 E-value=1.4e-13 Score=86.95 Aligned_cols=51 Identities=16% Similarity=0.447 Sum_probs=45.9
Q ss_pred CCCCCCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 032677 18 MTHSTHWNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEALVH 71 (136)
Q Consensus 18 ~~~~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~l~~ 71 (136)
.-..+.||.|||.+|..++.+|+. .+|..||..|||||..||++||..++.
T Consensus 5 ~~~k~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~ 55 (60)
T 2d9a_A 5 SSGKVKWTHEEDEQLRALVRQFGQ---QDWKFLASHFPNRTDQQCQYRWLRVLS 55 (60)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHTCT---TCHHHHHHHCSSSCHHHHHHHHHHTSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHccCCCHHHHHHHHHHHcC
Confidence 345678999999999999999984 479999999999999999999999874
No 18
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=1.1e-13 Score=89.08 Aligned_cols=55 Identities=35% Similarity=0.689 Sum_probs=50.1
Q ss_pred CCCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhCCCCCHHHHHHHHHHHHHhHhhhccCC
Q 032677 21 STHWNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEALVHDVYEIDSGR 80 (136)
Q Consensus 21 ~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~l~~dv~~ie~g~ 80 (136)
.+.||.|||.+|..++..|+. +|..||+ |||||..||++||..++.+...+++|.
T Consensus 9 k~~WT~eED~~L~~~~~~~g~----~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~~~ 63 (66)
T 2din_A 9 KTEWSREEEEKLLHLAKLMPT----QWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDSGP 63 (66)
T ss_dssp CCCCCHHHHHHHHHHHHHCTT----CHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSSCC
T ss_pred CCCCCHHHHHHHHHHHHHcCC----CHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCCCC
Confidence 468999999999999999984 8999999 889999999999999999888877764
No 19
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.46 E-value=9.8e-14 Score=85.23 Aligned_cols=48 Identities=25% Similarity=0.588 Sum_probs=44.3
Q ss_pred CCCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 032677 21 STHWNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEALVH 71 (136)
Q Consensus 21 ~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~l~~ 71 (136)
.+.||.|||.+|..++.+|+. .+|..||..|||||..||++||..++.
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~ 50 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGT---DDWKVIANYLPNRTDVQCQHRWQKVLN 50 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCS---SCHHHHHHTSTTCCHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence 468999999999999999985 479999999999999999999999874
No 20
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.44 E-value=2.8e-13 Score=85.39 Aligned_cols=47 Identities=23% Similarity=0.440 Sum_probs=43.1
Q ss_pred CCCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhCC-CCCHHHHHHHHHHHH
Q 032677 21 STHWNRSEDKLFEHALVMFPEESPDRWQKIASQLP-GKSAVEVREHYEALV 70 (136)
Q Consensus 21 ~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~vp-grt~~qv~~ry~~l~ 70 (136)
.+.||+|||.+|..+|.+|+. .+|..||+.|| |||..||++||.++.
T Consensus 9 ~~~WT~eED~~L~~~v~~~G~---~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 9 DENWGADEELLLIDACETLGL---GNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHTTT---TCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCc---CCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 567999999999999999984 48999999999 999999999999864
No 21
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.43 E-value=1.5e-13 Score=84.47 Aligned_cols=48 Identities=23% Similarity=0.521 Sum_probs=43.8
Q ss_pred CCCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 032677 21 STHWNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEALVH 71 (136)
Q Consensus 21 ~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~l~~ 71 (136)
.+.||.|||.+|..++.+|+. .+|..||..|||||..||++||.+++.
T Consensus 3 k~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~ 50 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYGP---KRWSVIAKHLKGRIGKQCRERWHNHLN 50 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCT---TCHHHHHTTSTTCCHHHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHHHHHHHCc---ChHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence 468999999999999999984 479999999999999999999998773
No 22
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.40 E-value=5.1e-13 Score=86.01 Aligned_cols=49 Identities=16% Similarity=0.529 Sum_probs=44.4
Q ss_pred CCCCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhCC--CCCHHHHHHHHHHHHH
Q 032677 20 HSTHWNRSEDKLFEHALVMFPEESPDRWQKIASQLP--GKSAVEVREHYEALVH 71 (136)
Q Consensus 20 ~~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~vp--grt~~qv~~ry~~l~~ 71 (136)
..+.||+|||.+|..++.+|+. .+|..||+.+| |||..||++||.+|+.
T Consensus 10 kk~~WT~eED~~L~~~V~~~G~---~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k 60 (64)
T 3sjm_A 10 KKQKWTVEESEWVKAGVQKYGE---GNWAAISKNYPFVNRTAVMIKDRWRTMKR 60 (64)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCT---TCHHHHHHHSCCSSCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHccCC---CchHHHHhhcCCCCCCHHHHHHHHHHHhc
Confidence 4578999999999999999985 37999999977 9999999999999874
No 23
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.39 E-value=6.9e-13 Score=86.76 Aligned_cols=49 Identities=27% Similarity=0.545 Sum_probs=45.3
Q ss_pred CCCCCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 032677 19 THSTHWNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEALVH 71 (136)
Q Consensus 19 ~~~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~l~~ 71 (136)
...++||.|||.+|..++..|+. +|..||..|||||..||+.||..++.
T Consensus 7 ~~~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~~~~Rt~~q~k~r~~~~l~ 55 (72)
T 2cu7_A 7 GYSVKWTIEEKELFEQGLAKFGR----RWTKISKLIGSRTVLQVKSYARQYFK 55 (72)
T ss_dssp SCCCCCCHHHHHHHHHHHHHTCS----CHHHHHHHHSSSCHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 35678999999999999999985 89999999999999999999999875
No 24
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.39 E-value=6.1e-13 Score=82.17 Aligned_cols=47 Identities=19% Similarity=0.468 Sum_probs=43.7
Q ss_pred CCCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhCC--CCCHHHHHHHHHHHH
Q 032677 21 STHWNRSEDKLFEHALVMFPEESPDRWQKIASQLP--GKSAVEVREHYEALV 70 (136)
Q Consensus 21 ~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~vp--grt~~qv~~ry~~l~ 70 (136)
.++||+|||.+|..++.+|+. .+|..||..|| |||..||++||.+++
T Consensus 2 r~~WT~eEd~~L~~~v~~~G~---~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~ 50 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYGE---GNWSKILLHYKFNNRTSVMLKDRWRTMK 50 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHCT---TCHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCc---CCHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 468999999999999999984 48999999999 999999999999987
No 25
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.33 E-value=3.2e-12 Score=82.89 Aligned_cols=51 Identities=18% Similarity=0.434 Sum_probs=46.3
Q ss_pred CCCCCCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhCC--CCCHHHHHHHHHHHHH
Q 032677 18 MTHSTHWNRSEDKLFEHALVMFPEESPDRWQKIASQLP--GKSAVEVREHYEALVH 71 (136)
Q Consensus 18 ~~~~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~vp--grt~~qv~~ry~~l~~ 71 (136)
....+.||.|||.+|..++.+|+. .+|..||..|| |||..||++||..++.
T Consensus 7 ~~~r~~WT~eED~~L~~~v~~~G~---~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~ 59 (69)
T 1ity_A 7 ARKRQAWLWEEDKNLRSGVRKYGE---GNWSKILLHYKFNNRTSVMLKDRWRTMKK 59 (69)
T ss_dssp SSSCCCCCHHHHHHHHHHHHHHCS---SCHHHHHHHSCCSSCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCC---CcHHHHHHHcCcCCCCHHHHHHHHHHHcC
Confidence 345678999999999999999984 47999999999 9999999999999985
No 26
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=7.7e-12 Score=79.53 Aligned_cols=46 Identities=24% Similarity=0.382 Sum_probs=41.9
Q ss_pred CCCCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhCCCCCHHHHHHHHHHH
Q 032677 20 HSTHWNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEAL 69 (136)
Q Consensus 20 ~~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~l 69 (136)
....||++|+++|+.+|++||. +|.+||+.||+||+.||+.+|-.-
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk----~w~~Ia~~l~~rt~~~~v~~Yy~~ 56 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPK----NFGLIASYLERKSVPDCVLYYYLT 56 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTT----CHHHHHHHCTTSCHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHhCC----CHHHHHHHcCCCCHHHHHHHHHHh
Confidence 3478999999999999999984 799999999999999999999754
No 27
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.20 E-value=6.1e-11 Score=85.17 Aligned_cols=79 Identities=16% Similarity=0.352 Sum_probs=63.7
Q ss_pred CCCCCCHHHHHHHHHHHhhCCCCCChHHHHHHHh----CCCCCHHHHHHHHHHHHHhHhhhccCCccCCCCCCCCCCCCC
Q 032677 20 HSTHWNRSEDKLFEHALVMFPEESPDRWQKIASQ----LPGKSAVEVREHYEALVHDVYEIDSGRVELPSYADDSDWDSP 95 (136)
Q Consensus 20 ~~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~----vpgrt~~qv~~ry~~l~~dv~~ie~g~v~~p~~~~~~~~~s~ 95 (136)
..++||.||+.+|..++.+|+. .+|..||.. |+|||..||++||.+|+.- ..|
T Consensus 16 ~r~~WT~EEd~~L~~gV~k~G~---G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~-~~~------------------- 72 (121)
T 2juh_A 16 IRRPFSVAEVEALVEAVEHLGT---GRWRDVKMRAFDNADHRTYVDLKDKWKTLVHT-ASI------------------- 72 (121)
T ss_dssp SSCCCCHHHHHHHHHHHHHHGG---GCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHH-HHT-------------------
T ss_pred CCCCCCHHHHHHHHHHHHHHCC---CCHHHHHHHhccccCCCCHHHHHHHHHHHHhh-hcc-------------------
Confidence 4578999999999999999985 489999999 4899999999999999841 110
Q ss_pred CccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhC
Q 032677 96 SQISFAPKSTKHGDPERKKGTPWTEEEHKLFLIGLKKIR 134 (136)
Q Consensus 96 ~~~~~~~k~~~~~~~erkkg~pWTeeEhrlfL~gL~kyG 134 (136)
.+..+++.||+++|...++.+...||
T Consensus 73 -------------~p~~krg~~~p~e~~~rv~~~h~~~g 98 (121)
T 2juh_A 73 -------------APQQRRGEPVPQDLLDRVLAAHAYWS 98 (121)
T ss_dssp -------------CSTTCCCSCCCHHHHHHHHHHHHHHH
T ss_pred -------------CCcccCCCCCCHHHHHHHHHHHHHHc
Confidence 01123467999999888888887776
No 28
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=99.18 E-value=3.4e-11 Score=98.16 Aligned_cols=103 Identities=23% Similarity=0.323 Sum_probs=72.3
Q ss_pred CCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhCCCCCHHHHHHHHHHHHHhH----------hhhccCCccCCCCCCC--
Q 032677 22 THWNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEALVHDV----------YEIDSGRVELPSYADD-- 89 (136)
Q Consensus 22 ~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~l~~dv----------~~ie~g~v~~p~~~~~-- 89 (136)
+.||..|...|++|+++|+. +.|+.||+.|+|||..||+..|..+.+.. ..||.|-..+......
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr---~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~ 187 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGR---DDIDNIAKDVEGKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKK 187 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCT---TCHHHHTTSSTTCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCH---HHHHHHHHHhcCCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56999999999999999986 47999999999999999998888888766 4466554333211100
Q ss_pred ------CCCC-CCCccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhCC
Q 032677 90 ------SDWD-SPSQISFAPKSTKHGDPERKKGTPWTEEEHKLFLIGLKKIRQ 135 (136)
Q Consensus 90 ------~~~~-s~~~~~~~~k~~~~~~~erkkg~pWTeeEhrlfL~gL~kyGK 135 (136)
..+. ...+.... -+ ..+|.+||++|||.||.+|.+||.
T Consensus 188 ~l~~Ki~~~~~P~~~L~i~-----y~---~~k~k~yteeEDRfLL~~l~k~G~ 232 (304)
T 1ofc_X 188 ALDQKMSRYRAPFHQLRLQ-----YG---NNKGKNYTEIEDRFLVCMLHKLGF 232 (304)
T ss_dssp HHHHHHHTCSSHHHHCCCC-----CT---TCCCSSCCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHhcCcHHHhccc-----cC---CCCCCccCHHHHHHHHHHHHHhcC
Confidence 0000 00000000 00 125679999999999999999997
No 29
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.14 E-value=4.5e-11 Score=82.63 Aligned_cols=47 Identities=28% Similarity=0.666 Sum_probs=43.6
Q ss_pred CCCCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhCCCCCHHHHHHHHHHHH
Q 032677 20 HSTHWNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEALV 70 (136)
Q Consensus 20 ~~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~l~ 70 (136)
..++||.|||.+|..++..|+. +|..||..|||||..||+.||..++
T Consensus 55 ~~~~Wt~eEd~~L~~~~~~~G~----~W~~Ia~~l~gRt~~~~k~rw~~~~ 101 (105)
T 1gv2_A 55 KKTSWTEEEDRIIYQAHKRLGN----RWAEIAKLLPGRTDNAIKNHWNSTM 101 (105)
T ss_dssp CCCCCCHHHHHHHHHHHHHHSS----CHHHHHTTCTTCCHHHHHHHHHHHT
T ss_pred cccCCCHHHHHHHHHHHHHhCC----CHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 3578999999999999999984 7999999999999999999999886
No 30
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.14 E-value=7e-11 Score=82.26 Aligned_cols=49 Identities=20% Similarity=0.514 Sum_probs=45.0
Q ss_pred CCCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhCCCCCHHHHHHHHHHHHHhH
Q 032677 21 STHWNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEALVHDV 73 (136)
Q Consensus 21 ~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~l~~dv 73 (136)
.++||.|||.+|..++..|+. +|..||..|||||..||+.||..|+..+
T Consensus 53 ~~~WT~eEd~~L~~~~~~~G~----~W~~Ia~~l~gRt~~~~k~rw~~l~r~~ 101 (107)
T 2k9n_A 53 TDPWSPEEDMLLDQKYAEYGP----KWNKISKFLKNRSDNNIRNRWMMIARHR 101 (107)
T ss_dssp TCCCCHHHHHHHHHHHHHTCS----CHHHHHHHHSSSCHHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHHhCc----CHHHHHHHCCCCCHHHHHHHHHHHHhhH
Confidence 578999999999999999984 7999999999999999999999998643
No 31
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.70 E-value=7.6e-12 Score=85.15 Aligned_cols=48 Identities=17% Similarity=0.288 Sum_probs=44.2
Q ss_pred CCCCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 032677 20 HSTHWNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEALVH 71 (136)
Q Consensus 20 ~~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~l~~ 71 (136)
..+.||.|||.+|..++..|+. +|..||..|||||..||+.||..++.
T Consensus 15 ~~~~WT~eEd~~l~~~~~~~G~----~W~~IA~~l~gRt~~q~k~r~~~~lr 62 (89)
T 2ltp_A 15 YFQGWTEEEMGTAKKGLLEHGR----NWSAIARMVGSKTVSQCKNFYFNYKK 62 (89)
Confidence 4578999999999999999974 79999999999999999999998864
No 32
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.10 E-value=5.8e-11 Score=78.36 Aligned_cols=46 Identities=17% Similarity=0.351 Sum_probs=42.4
Q ss_pred CCCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 032677 21 STHWNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEALVH 71 (136)
Q Consensus 21 ~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~l~~ 71 (136)
.++||+|||++|..++.+|+. +|..||..| |||..||+.||..|..
T Consensus 23 k~~wT~EED~~L~~l~~~~G~----kW~~IA~~l-gRt~~q~knRw~~L~~ 68 (73)
T 2llk_A 23 VGKYTPEEIEKLKELRIKHGN----DWATIGAAL-GRSASSVKDRCRLMKD 68 (73)
T ss_dssp CCSSCHHHHHHHHHHHHHHSS----CHHHHHHHH-TSCHHHHHHHHHHCSC
T ss_pred CCCCCHHHHHHHHHHHHHHCC----CHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence 568999999999999999984 599999999 9999999999998764
No 33
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.08 E-value=1.3e-10 Score=83.21 Aligned_cols=47 Identities=21% Similarity=0.607 Sum_probs=43.9
Q ss_pred CCCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 032677 21 STHWNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEALVH 71 (136)
Q Consensus 21 ~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~l~~ 71 (136)
.++||.|||.+|..++..|+. +|..||..|||||..||+.||..|+.
T Consensus 62 ~~~WT~eEd~~L~~~v~~~G~----~W~~Ia~~l~gRt~~~~k~rw~~l~~ 108 (126)
T 3osg_A 62 HTPWTAEEDALLVQKIQEYGR----QWAIIAKFFPGRTDIHIKNRWVTISN 108 (126)
T ss_dssp CSCCCHHHHHHHHHHHHHHCS----CHHHHHTTSTTCCHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHCc----CHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 468999999999999999984 79999999999999999999999985
No 34
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.05 E-value=3e-10 Score=76.59 Aligned_cols=47 Identities=17% Similarity=0.424 Sum_probs=43.4
Q ss_pred CCCCHHHHHHHHHHHhhCCCCCChHHHHHHHh----CCCCCHHHHHHHHHHHHH
Q 032677 22 THWNRSEDKLFEHALVMFPEESPDRWQKIASQ----LPGKSAVEVREHYEALVH 71 (136)
Q Consensus 22 ~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~----vpgrt~~qv~~ry~~l~~ 71 (136)
.+||.||+.+|..++.+|+.+ +|..|+.. |||||..||++||.+++.
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g---~W~~I~~~~~~~~~~RT~~~lKdrWrnllk 51 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTG---RWRDVKMRAFDNADHRTYVDLKDKWKTLVH 51 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSS---CHHHHHHHHCTTCTTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCC---CcHHHHHhhccccCCCCHHHHHHHHHHHHH
Confidence 479999999999999999864 89999996 899999999999999984
No 35
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.03 E-value=1.6e-10 Score=82.58 Aligned_cols=47 Identities=30% Similarity=0.668 Sum_probs=43.5
Q ss_pred CCCCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhCCCCCHHHHHHHHHHHH
Q 032677 20 HSTHWNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEALV 70 (136)
Q Consensus 20 ~~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~l~ 70 (136)
..++||.|||.+|..++..|+. +|..||+.|||||..||+.||..++
T Consensus 78 ~~~~WT~eEd~~L~~~~~~~G~----~W~~Ia~~l~gRt~~~~k~r~~~~~ 124 (128)
T 1h8a_C 78 KKTSWTEEEDRIIYQAHKRLGN----RWAEIAKLLPGRTDNAVKNHWNSTM 124 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCS----CHHHHGGGSTTCCHHHHHHHHHTTT
T ss_pred ccccCCHHHHHHHHHHHHHHCc----CHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999984 7999999999999999999999876
No 36
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.03 E-value=1.1e-09 Score=78.78 Aligned_cols=49 Identities=18% Similarity=0.411 Sum_probs=44.4
Q ss_pred CCCCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhC----CCCCHHHHHHHHHHHHH
Q 032677 20 HSTHWNRSEDKLFEHALVMFPEESPDRWQKIASQL----PGKSAVEVREHYEALVH 71 (136)
Q Consensus 20 ~~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~v----pgrt~~qv~~ry~~l~~ 71 (136)
..++||.||+.+|..++.+|+.+ +|..|+..+ +|||..||++||.+|+.
T Consensus 30 ~r~~WT~EEd~~L~~gV~k~G~g---~W~~I~~~~~~~~~~RT~vdlKdRWrnllk 82 (122)
T 2roh_A 30 IRRPFTVAEVELLVEAVEHLGTG---RWRDVKFRAFENVHHRTYVDLKDKWKTLVH 82 (122)
T ss_dssp CCCCCCHHHHHHHHHHHHHHSSS---CHHHHHHHHHSSSCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCC---ChHHHHHHhccccCCCCHHHHHHHHHHHHh
Confidence 45789999999999999999864 899999974 89999999999999984
No 37
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.99 E-value=4.2e-10 Score=80.87 Aligned_cols=47 Identities=17% Similarity=0.517 Sum_probs=43.8
Q ss_pred CCCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 032677 21 STHWNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEALVH 71 (136)
Q Consensus 21 ~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~l~~ 71 (136)
.++||.|||.+|..++..|+. +|..||..|||||..||+.||..++.
T Consensus 54 ~~~Wt~eEd~~L~~~~~~~G~----~W~~Ia~~l~gRt~~~~k~rw~~~l~ 100 (131)
T 3zqc_A 54 KHAWTPEEDETIFRNYLKLGS----KWSVIAKLIPGRTDNAIKNRWNSSIS 100 (131)
T ss_dssp CSCCCHHHHHHHHHHHHHSCS----CHHHHTTTSTTCCHHHHHHHHHHTTG
T ss_pred CCCCCHHHHHHHHHHHHHHCc----CHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 458999999999999999984 79999999999999999999999874
No 38
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.93 E-value=2.8e-09 Score=68.12 Aligned_cols=47 Identities=23% Similarity=0.341 Sum_probs=41.7
Q ss_pred CCCCCCHHHHHHHHHHHhhCCCCCChHHHHHHH-hCCCCCHHHHHHHHHHHH
Q 032677 20 HSTHWNRSEDKLFEHALVMFPEESPDRWQKIAS-QLPGKSAVEVREHYEALV 70 (136)
Q Consensus 20 ~~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~-~vpgrt~~qv~~ry~~l~ 70 (136)
....||+||.++|+.+|++|+. .|..||+ .||+||+.||++.|-.-.
T Consensus 8 ~~~~WT~eE~~~Fe~~l~~yGK----df~~I~~~~v~~Kt~~~~v~fYY~wK 55 (63)
T 2yqk_A 8 IEKCWTEDEVKRFVKGLRQYGK----NFFRIRKELLPNKETGELITFYYYWK 55 (63)
T ss_dssp CCCSCCHHHHHHHHHHHHHTCS----CHHHHHHHSCTTSCHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHhCc----cHHHHHHHHcCCCcHHHHHHHHhccc
Confidence 4578999999999999999996 5999999 599999999999986543
No 39
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.87 E-value=5.4e-09 Score=68.16 Aligned_cols=48 Identities=31% Similarity=0.422 Sum_probs=42.5
Q ss_pred CCCCCCCHHHHHHHHHHHhhCCCCCChHHHHHHH-hCCCCCHHHHHHHHHHHH
Q 032677 19 THSTHWNRSEDKLFEHALVMFPEESPDRWQKIAS-QLPGKSAVEVREHYEALV 70 (136)
Q Consensus 19 ~~~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~-~vpgrt~~qv~~ry~~l~ 70 (136)
.....||++|.++|+.+|++|+. .|..||. .||+||+.||++.|-.-.
T Consensus 6 ~~~~~WT~eE~~~Fe~~l~~yGK----df~~I~~~~v~~Kt~~~~v~fYY~wK 54 (70)
T 2crg_A 6 SGMEEWSASEACLFEEALEKYGK----DFNDIRQDFLPWKSLTSIIEYYYMWK 54 (70)
T ss_dssp CSSCCCCHHHHHHHHHHHHHTCS----CHHHHHHTTCSSSCHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHhCc----cHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence 45678999999999999999996 4999999 599999999999997543
No 40
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=98.83 E-value=3.8e-09 Score=74.05 Aligned_cols=49 Identities=16% Similarity=0.364 Sum_probs=44.7
Q ss_pred CCCCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhC----CCCCHHHHHHHHHHHHH
Q 032677 20 HSTHWNRSEDKLFEHALVMFPEESPDRWQKIASQL----PGKSAVEVREHYEALVH 71 (136)
Q Consensus 20 ~~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~v----pgrt~~qv~~ry~~l~~ 71 (136)
..++||.||+.+|..++.+|+.+ +|..|+..+ ||||..+|++||.+|+.
T Consensus 12 ~r~~WT~EEd~~L~~gV~k~G~g---~W~~I~~~~~~~f~~RT~v~lKdrWrnllk 64 (105)
T 2aje_A 12 IRRPFSVAEVEALVQAVEKLGTG---RWRDVKLCAFEDADHRTYVDLKDKWKTLVH 64 (105)
T ss_dssp CCCSCCHHHHHHHHHHHHHHCSS---SHHHHHSSSSSSTTCCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCC---ChHHHHHHhccccCCCCHHHHHHHHHHHHh
Confidence 45789999999999999999864 899999976 89999999999999984
No 41
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=98.83 E-value=1.4e-08 Score=80.36 Aligned_cols=102 Identities=16% Similarity=0.273 Sum_probs=64.1
Q ss_pred CCCCCHHHHHHHHHHHhhCCCC--CChHHHHHHHhCCCCCHHHHHHHHHHHHHhHhhhccCCccCCCCCCCCCCCCCCcc
Q 032677 21 STHWNRSEDKLFEHALVMFPEE--SPDRWQKIASQLPGKSAVEVREHYEALVHDVYEIDSGRVELPSYADDSDWDSPSQI 98 (136)
Q Consensus 21 ~~~WT~eEdk~le~al~~~~~~--~~~rW~~IA~~vpgrt~~qv~~ry~~l~~dv~~ie~g~v~~p~~~~~~~~~s~~~~ 98 (136)
.+.||.|||++|..++.++|.. +...|..||..|||||..+|+.||..++.. .++-. +..+.......-..+.-+
T Consensus 8 k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~--~ln~v-y~~ded~~Li~d~~Gn~i 84 (246)
T 1ign_A 8 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSK--RLEYV-YEVDKFGKLVRDDDGNLI 84 (246)
T ss_dssp CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGG--GCCCE-ECBCTTSCBCBCTTSCBC
T ss_pred CCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhh--hcccc-cccCcchhhhhccCCCce
Confidence 4589999999999999999852 122399999999999999999999998752 22211 111111110000000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHh
Q 032677 99 SFAPKSTKHGDPERKKGTPWTEEEHKLFLIGLKK 132 (136)
Q Consensus 99 ~~~~k~~~~~~~erkkg~pWTeeEhrlfL~gL~k 132 (136)
.. .--.+.. | ..||.+|+-+|...+++
T Consensus 85 ki-----s~lp~si-K-~rftaeeDy~L~~~i~~ 111 (246)
T 1ign_A 85 KT-----KVLPPSI-K-RKFSADEDYTLAIAVKK 111 (246)
T ss_dssp EE-----SSCCCCS-C-CCCCHHHHHHHHHHHHH
T ss_pred ee-----eccCccc-c-CccchhccHHHHHHHHH
Confidence 00 0000111 1 45999999999999987
No 42
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.81 E-value=9.4e-09 Score=65.72 Aligned_cols=52 Identities=19% Similarity=0.368 Sum_probs=45.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCCCChHHHHHHH---hCCCCCHHHHHHHHHHHH
Q 032677 15 SFAMTHSTHWNRSEDKLFEHALVMFPEESPDRWQKIAS---QLPGKSAVEVREHYEALV 70 (136)
Q Consensus 15 ~~~~~~~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~---~vpgrt~~qv~~ry~~l~ 70 (136)
++..+...+||.||+..|...+.+|+. .|..|+. .+++||..+++++|..|.
T Consensus 2 ~~~~~~r~~WT~EE~~~L~~gV~k~G~----~W~~I~~~y~f~~~RT~VdLKdk~r~L~ 56 (62)
T 1x58_A 2 SSGSSGRKDFTKEEVNYLFHGVKTMGN----HWNSILWSFPFQKGRRAVDLAHKYHRLI 56 (62)
T ss_dssp CCCCCCSSSCCHHHHHHHHHHHHHHCS----CHHHHHHHSCCCTTCCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHhH----hHHHHHHhCCCccCcccchHHHHHHHHH
Confidence 445556789999999999999999984 7999995 667999999999999987
No 43
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.78 E-value=7.9e-09 Score=81.12 Aligned_cols=56 Identities=18% Similarity=0.284 Sum_probs=47.4
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhCCCCCHHHHHHHHHHHH
Q 032677 11 SNNNSFAMTHSTHWNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEALV 70 (136)
Q Consensus 11 ~~~~~~~~~~~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~l~ 70 (136)
.............||.||+++|+.||++|+. +|..||..||+||+.||+.+|....
T Consensus 123 ~R~pe~~~k~s~~WTeEE~~lFleAl~kYGK----DW~~IAk~VgTKT~~QcKnfY~~~k 178 (235)
T 2iw5_B 123 YRLPEVIQKCNARWTTEEQLLAVQAIRKYGR----DFQAISDVIGNKSVVQVKNFFVNYR 178 (235)
T ss_dssp GCCCCCCCCCCSSCCHHHHHHHHHHHHHHSS----CHHHHHHHHSSCCHHHHHHHHHHTT
T ss_pred ccCCCCCCccCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 3333444456779999999999999999985 5999999999999999999998754
No 44
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=98.64 E-value=5.1e-08 Score=66.89 Aligned_cols=45 Identities=24% Similarity=0.369 Sum_probs=41.3
Q ss_pred CCCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhCCCCCHHHHHHHHHHH
Q 032677 21 STHWNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEAL 69 (136)
Q Consensus 21 ~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~l 69 (136)
...||++|..+|+.++..||. .|-+||+.||+||+.||+..|-.-
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK----~F~~Ia~~l~~Kt~~~cV~~YY~~ 87 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPK----NFGLIASFLERKTVAECVLYYYLT 87 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTT----CHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCC----CHHHHHHHcCCCCHHHHHHHHhcc
Confidence 468999999999999999986 699999999999999999998654
No 45
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.62 E-value=3.9e-08 Score=84.39 Aligned_cols=45 Identities=24% Similarity=0.515 Sum_probs=0.0
Q ss_pred CCCCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhCCCCCHHHHHHHHHH
Q 032677 20 HSTHWNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEA 68 (136)
Q Consensus 20 ~~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~ 68 (136)
....||.+|.++|+.+|..|+. .|..|+..||+||+.+|+..|-.
T Consensus 188 ~~d~WT~eE~~lFe~al~~yGK----dF~~I~~~lp~Ksv~e~V~yYY~ 232 (482)
T 2xag_B 188 FPDEWTVEDKVLFEQAFSFHGK----TFHRIQQMLPDKSIASLVKFYYS 232 (482)
T ss_dssp -------------------------------------------------
T ss_pred cccccCHHHHHHHHHHHHHcCc----cHHHHHHHcCCCCHHHHHHHhcc
Confidence 3458999999999999999986 59999999999999999987543
No 46
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=98.60 E-value=6.2e-07 Score=68.32 Aligned_cols=51 Identities=22% Similarity=0.246 Sum_probs=42.4
Q ss_pred CCCCCHHHHHHHHHHHhhCCCCCChHHHHHHHh--CCCCCHHHHHHHHHHHHHh
Q 032677 21 STHWNRSEDKLFEHALVMFPEESPDRWQKIASQ--LPGKSAVEVREHYEALVHD 72 (136)
Q Consensus 21 ~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~--vpgrt~~qv~~ry~~l~~d 72 (136)
...||..|...|.+|+.+|+. ..+||+.|++. +++||..+|...+..+.+.
T Consensus 7 ~~~~t~~E~r~fira~~kfG~-~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~ 59 (211)
T 4b4c_A 7 IKGFSDAEIRRFIKSYKKFGG-PLERLDAIARDAELVDKSETDLRRLGELVHNG 59 (211)
T ss_dssp -CCSCHHHHHHHHHHHTTCSS-GGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCC-chhHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 467999999999999999984 24699999964 7899999999877776653
No 47
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.43 E-value=2.4e-07 Score=58.51 Aligned_cols=29 Identities=17% Similarity=0.327 Sum_probs=25.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhhCCC
Q 032677 108 GDPERKKGTPWTEEEHKLFLIGLKKIRQG 136 (136)
Q Consensus 108 ~~~erkkg~pWTeeEhrlfL~gL~kyGKG 136 (136)
+..+|+...+||+|||++|+.||.+|||.
T Consensus 5 ~~~~r~~~~~WT~eE~~~F~~~~~~~gk~ 33 (61)
T 2eqr_A 5 SSGDRQFMNVWTDHEKEIFKDKFIQHPKN 33 (61)
T ss_dssp CCCCCSCCCSCCHHHHHHHHHHHHHSTTC
T ss_pred cccccccCCCCCHHHHHHHHHHHHHhCCC
Confidence 45678888999999999999999999983
No 48
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=98.26 E-value=2.6e-06 Score=58.42 Aligned_cols=49 Identities=16% Similarity=0.304 Sum_probs=44.4
Q ss_pred CCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhC-----CCCCHHHHHHHHHHHHHhHh
Q 032677 22 THWNRSEDKLFEHALVMFPEESPDRWQKIASQL-----PGKSAVEVREHYEALVHDVY 74 (136)
Q Consensus 22 ~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~v-----pgrt~~qv~~ry~~l~~dv~ 74 (136)
..||.||+..|-.+..+|+. ||-.|+..+ ++||++++++||..+..-+.
T Consensus 31 ~~WTkEETd~Lf~L~~~fdl----RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~ 84 (93)
T 3hm5_A 31 DAWTKAETDHLFDLSRRFDL----RFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLA 84 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTT----CHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCC----CeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHH
Confidence 78999999999999999985 999999999 58999999999999876443
No 49
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.17 E-value=8.1e-06 Score=55.72 Aligned_cols=60 Identities=22% Similarity=0.302 Sum_probs=49.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhCCCCCHHHHHHHHHHHHHhHhh
Q 032677 15 SFAMTHSTHWNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEALVHDVYE 75 (136)
Q Consensus 15 ~~~~~~~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~l~~dv~~ 75 (136)
++.+...-.||+|||..+-.+..+-++ +++.|..||+.+.+||..||.+||..|+..+..
T Consensus 27 ~s~Ge~VvlWTRe~DR~IL~~cQ~~G~-s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf~~ 86 (95)
T 1ug2_A 27 SSTGEKVVLWTREADRVILTMCQEQGA-QPHTFSVISQQLGNKTPVEVSHRFRELMQLFHT 86 (95)
T ss_dssp CCCCCCCSSSCHHHHHHHHHHHHHTTS-CTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEeccccCHHHHHHHHhcCC-ChhHHHHHHHHHccCCHHHHHHHHHHHHHHHHH
Confidence 344445567999999999898888765 478999999999889999999999999865443
No 50
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.11 E-value=3.7e-06 Score=72.21 Aligned_cols=47 Identities=21% Similarity=0.401 Sum_probs=42.8
Q ss_pred CCCCCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhCCCCCHHHHHHHHHHH
Q 032677 19 THSTHWNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEAL 69 (136)
Q Consensus 19 ~~~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~l 69 (136)
.....||.+|..+|..+|.+|+. .|..||..|+.||+.||+.+|...
T Consensus 378 ~~~~~WT~eE~~~f~~al~~yGk----dw~~IA~~VgTKT~~Qvk~fy~~~ 424 (482)
T 2xag_B 378 KCNARWTTEEQLLAVQAIRKYGR----DFQAISDVIGNKSVVQVKNFFVNY 424 (482)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHTT----CHHHHHHHHSSCCHHHHHHHHHHT
T ss_pred ccCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHhCCCCHHHHHHHHHHH
Confidence 45678999999999999999985 599999999999999999999764
No 51
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.07 E-value=1.1e-05 Score=50.71 Aligned_cols=50 Identities=10% Similarity=0.187 Sum_probs=43.1
Q ss_pred CCCCCHHHHHHHHHHHhhCCCC-----CChHHHHHHH-hCCCCCHHHHHHHHHHHH
Q 032677 21 STHWNRSEDKLFEHALVMFPEE-----SPDRWQKIAS-QLPGKSAVEVREHYEALV 70 (136)
Q Consensus 21 ~~~WT~eEdk~le~al~~~~~~-----~~~rW~~IA~-~vpgrt~~qv~~ry~~l~ 70 (136)
..++|.|||.+|...|+.|... .+.-|..||+ .+|++|-..|++||..-+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l 57 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHL 57 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHc
Confidence 4579999999999999999431 3567999999 899999999999999854
No 52
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.98 E-value=7.4e-06 Score=51.98 Aligned_cols=23 Identities=35% Similarity=0.600 Sum_probs=20.8
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCC
Q 032677 114 KGTPWTEEEHKLFLIGLKKIRQG 136 (136)
Q Consensus 114 kg~pWTeeEhrlfL~gL~kyGKG 136 (136)
...+||+||+++|+.||.+|||.
T Consensus 8 ~~~~WT~eE~~~Fe~~l~~yGKd 30 (63)
T 2yqk_A 8 IEKCWTEDEVKRFVKGLRQYGKN 30 (63)
T ss_dssp CCCSCCHHHHHHHHHHHHHTCSC
T ss_pred CCCCcCHHHHHHHHHHHHHhCcc
Confidence 34789999999999999999984
No 53
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=97.92 E-value=1.5e-05 Score=52.83 Aligned_cols=25 Identities=32% Similarity=0.559 Sum_probs=21.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhCC
Q 032677 111 ERKKGTPWTEEEHKLFLIGLKKIRQ 135 (136)
Q Consensus 111 erkkg~pWTeeEhrlfL~gL~kyGK 135 (136)
.+....+||+|||.+||.||++||.
T Consensus 14 ~~~~~~~WT~eEd~~Ll~~v~~~G~ 38 (79)
T 2yus_A 14 GASAGREWTEQETLLLLEALEMYKD 38 (79)
T ss_dssp SSCCSCCCCHHHHHHHHHHHHHSSS
T ss_pred ccccCCCcCHHHHHHHHHHHHHhCC
Confidence 3444579999999999999999993
No 54
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=97.09 E-value=1.9e-06 Score=55.88 Aligned_cols=56 Identities=18% Similarity=0.248 Sum_probs=46.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhCCCCCHHHHHHHHHHHHHh
Q 032677 15 SFAMTHSTHWNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEALVHD 72 (136)
Q Consensus 15 ~~~~~~~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~l~~d 72 (136)
++.+...-.||+|||..+-.+..+-++ ++..|..||..+ +||..||.+||..|+.-
T Consensus 8 ~~~ge~vvlWTReeDR~IL~~cq~~G~-s~~tfa~iA~~L-nks~~QV~~RF~~Lm~L 63 (70)
T 2lr8_A 8 KKKGEIIILWTRNDDRVILLECQKRGP-SSKTFAYLAAKL-DKNPNQVSERFQQLMKL 63 (70)
Confidence 444555678999999988777776554 368999999999 99999999999999853
No 55
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.83 E-value=1.7e-05 Score=51.36 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=21.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCC
Q 032677 112 RKKGTPWTEEEHKLFLIGLKKIRQG 136 (136)
Q Consensus 112 rkkg~pWTeeEhrlfL~gL~kyGKG 136 (136)
|....+||+||+++|+.||.+|||.
T Consensus 5 r~~~~~WT~eE~~~Fe~~l~~yGKd 29 (70)
T 2crg_A 5 SSGMEEWSASEACLFEEALEKYGKD 29 (70)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHTCSC
T ss_pred ccCCCCCCHHHHHHHHHHHHHhCcc
Confidence 4445789999999999999999984
No 56
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=97.66 E-value=0.00034 Score=58.33 Aligned_cols=46 Identities=33% Similarity=0.410 Sum_probs=39.3
Q ss_pred CCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhCC-CCCHHHHHHHHHHHH
Q 032677 22 THWNRSEDKLFEHALVMFPEESPDRWQKIASQLP-GKSAVEVREHYEALV 70 (136)
Q Consensus 22 ~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~vp-grt~~qv~~ry~~l~ 70 (136)
+.||.-|=..|.+|+++|+. +.-+.||+.|. |||..||..-++.+.
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR---~d~~~IA~ev~~~Kt~eEV~~Y~~vFw 170 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGR---NSIQAIARELAPGKTLEEVRAYAKAFW 170 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCT---TCHHHHHSSCCCSSSHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCH---hHHHHHHHHHccCCCHHHHHHHHHHHH
Confidence 57999999999999999996 46899999998 999999995444444
No 57
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=97.58 E-value=0.00027 Score=48.34 Aligned_cols=50 Identities=16% Similarity=0.303 Sum_probs=44.1
Q ss_pred CCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhCC-----CCCHHHHHHHHHHHHHhHhh
Q 032677 22 THWNRSEDKLFEHALVMFPEESPDRWQKIASQLP-----GKSAVEVREHYEALVHDVYE 75 (136)
Q Consensus 22 ~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~vp-----grt~~qv~~ry~~l~~dv~~ 75 (136)
..||.||-..|-.+...|.- ||-.|+.... .||++|+++||-.+...+..
T Consensus 31 ~~WT~eETd~LfdLc~~fdl----Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~ 85 (93)
T 4iej_A 31 DAWTKAETDHLFDLSRRFDL----RFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLAN 85 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTT----CHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCC----CeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 46999999999999999985 9999999985 69999999999999765443
No 58
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.51 E-value=2.2e-05 Score=51.62 Aligned_cols=24 Identities=29% Similarity=0.499 Sum_probs=19.2
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCC
Q 032677 113 KKGTPWTEEEHKLFLIGLKKIRQG 136 (136)
Q Consensus 113 kkg~pWTeeEhrlfL~gL~kyGKG 136 (136)
..+.+||.+|+++|+.||.+|++|
T Consensus 18 ~ss~~WT~eE~K~FE~ALa~yp~~ 41 (74)
T 4eef_G 18 GSGRPWKFSENIAFEIALSFTNKD 41 (74)
T ss_dssp ----CCCTTHHHHHHHHTSSSCSS
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCC
Confidence 335789999999999999999986
No 59
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.42 E-value=0.00016 Score=47.26 Aligned_cols=22 Identities=32% Similarity=0.789 Sum_probs=19.9
Q ss_pred CCCCCHHHHHHHHHHHHhhCCC
Q 032677 115 GTPWTEEEHKLFLIGLKKIRQG 136 (136)
Q Consensus 115 g~pWTeeEhrlfL~gL~kyGKG 136 (136)
..+||.+|+++|+.+|.+||++
T Consensus 18 ~~~WT~eEd~~L~~al~~~g~~ 39 (73)
T 2cqr_A 18 EEPWTQNQQKLLELALQQYPRG 39 (73)
T ss_dssp SCCCCHHHHHHHHHHHHHSCSS
T ss_pred CCCCCHHHHHHHHHHHHHcCCC
Confidence 3689999999999999999964
No 60
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.42 E-value=0.00012 Score=47.67 Aligned_cols=22 Identities=27% Similarity=0.486 Sum_probs=20.1
Q ss_pred CCCCCHHHHHHHHHHHHhhCCC
Q 032677 115 GTPWTEEEHKLFLIGLKKIRQG 136 (136)
Q Consensus 115 g~pWTeeEhrlfL~gL~kyGKG 136 (136)
..+||.||+++|+.+|.+||+|
T Consensus 8 ~~~WT~eE~k~fe~al~~~p~~ 29 (72)
T 2cqq_A 8 APEWTEEDLSQLTRSMVKFPGG 29 (72)
T ss_dssp CCCCCHHHHHHHHHHHHHSCTT
T ss_pred CCCCCHHHHHHHHHHHHHCCCC
Confidence 3589999999999999999976
No 61
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.30 E-value=0.00027 Score=45.43 Aligned_cols=20 Identities=45% Similarity=0.727 Sum_probs=19.0
Q ss_pred CCCCHHHHHHHHHHHHhhCC
Q 032677 116 TPWTEEEHKLFLIGLKKIRQ 135 (136)
Q Consensus 116 ~pWTeeEhrlfL~gL~kyGK 135 (136)
.+||+||+.+||.++++||+
T Consensus 10 ~~WT~eEd~~l~~~~~~~G~ 29 (72)
T 2cu7_A 10 VKWTIEEKELFEQGLAKFGR 29 (72)
T ss_dssp CCCCHHHHHHHHHHHHHTCS
T ss_pred CCCCHHHHHHHHHHHHHHCc
Confidence 68999999999999999996
No 62
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.25 E-value=0.00018 Score=47.07 Aligned_cols=21 Identities=14% Similarity=0.373 Sum_probs=19.4
Q ss_pred CCCCHHHHHHHHHHHHhhCCC
Q 032677 116 TPWTEEEHKLFLIGLKKIRQG 136 (136)
Q Consensus 116 ~pWTeeEhrlfL~gL~kyGKG 136 (136)
.+||++|+++|+.||.+|+++
T Consensus 9 ~~WT~eE~k~fe~ALa~~~~~ 29 (73)
T 1wgx_A 9 KEWNEKELQKLHCAFASLPKH 29 (73)
T ss_dssp SCCCHHHHHHHHHHHHHSCSS
T ss_pred CCCCHHHHHHHHHHHHHCCCC
Confidence 579999999999999999985
No 63
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.21 E-value=0.00012 Score=48.47 Aligned_cols=58 Identities=12% Similarity=0.289 Sum_probs=45.4
Q ss_pred CCCCCHHHHHHHHHHHhhCC----C--CCChHHHHHHHhCC----CCCHHHHHHHHHHHHHhHhhhcc
Q 032677 21 STHWNRSEDKLFEHALVMFP----E--ESPDRWQKIASQLP----GKSAVEVREHYEALVHDVYEIDS 78 (136)
Q Consensus 21 ~~~WT~eEdk~le~al~~~~----~--~~~~rW~~IA~~vp----grt~~qv~~ry~~l~~dv~~ie~ 78 (136)
...||.+|..+|..+..... . .....|+.||+.|- .||+.||+.+|++|...-+.|..
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk~~k~ 71 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFKKAKH 71 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCSCSS
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999986521 1 12346999999975 59999999999999987666543
No 64
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=97.15 E-value=0.00037 Score=54.70 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=21.5
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCC
Q 032677 113 KKGTPWTEEEHKLFLIGLKKIRQG 136 (136)
Q Consensus 113 kkg~pWTeeEhrlfL~gL~kyGKG 136 (136)
+...+||+||+++|+.||.+|||.
T Consensus 131 k~s~~WTeEE~~lFleAl~kYGKD 154 (235)
T 2iw5_B 131 KCNARWTTEEQLLAVQAIRKYGRD 154 (235)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHSSC
T ss_pred ccCCCCCHHHHHHHHHHHHHHCcC
Confidence 456789999999999999999984
No 65
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=97.15 E-value=0.00035 Score=42.28 Aligned_cols=20 Identities=30% Similarity=0.484 Sum_probs=18.8
Q ss_pred CCCCHHHHHHHHHHHHhhCC
Q 032677 116 TPWTEEEHKLFLIGLKKIRQ 135 (136)
Q Consensus 116 ~pWTeeEhrlfL~gL~kyGK 135 (136)
.+||+||+.+|+.++.+||.
T Consensus 3 ~~WT~eEd~~L~~~v~~~G~ 22 (53)
T 1w0t_A 3 QAWLWEEDKNLRSGVRKYGE 22 (53)
T ss_dssp CCCCHHHHHHHHHHHHHHCT
T ss_pred CCCCHHHHHHHHHHHHHHCc
Confidence 68999999999999999995
No 66
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=97.12 E-value=0.00037 Score=44.14 Aligned_cols=22 Identities=32% Similarity=0.569 Sum_probs=19.7
Q ss_pred CCCCCHHHHHHHHHHHHhhCCC
Q 032677 115 GTPWTEEEHKLFLIGLKKIRQG 136 (136)
Q Consensus 115 g~pWTeeEhrlfL~gL~kyGKG 136 (136)
..+||+||+.+|+.++++||.|
T Consensus 11 k~~WT~eED~~L~~~V~~~G~~ 32 (64)
T 3sjm_A 11 KQKWTVEESEWVKAGVQKYGEG 32 (64)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTT
T ss_pred CCCCCHHHHHHHHHHHHccCCC
Confidence 3689999999999999999954
No 67
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.11 E-value=0.00041 Score=44.74 Aligned_cols=20 Identities=35% Similarity=0.305 Sum_probs=18.7
Q ss_pred CCCCHHHHHHHHHHHHhhCC
Q 032677 116 TPWTEEEHKLFLIGLKKIRQ 135 (136)
Q Consensus 116 ~pWTeeEhrlfL~gL~kyGK 135 (136)
.+||+|||.+|+.+|++||.
T Consensus 9 ~~WT~eEd~~L~~~v~~~g~ 28 (75)
T 2yum_A 9 QLWTVEEQKKLEQLLIKYPP 28 (75)
T ss_dssp SCCCHHHHHHHHHHHHHSCC
T ss_pred CCCCHHHHHHHHHHHHHhCC
Confidence 58999999999999999994
No 68
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=97.10 E-value=0.00036 Score=44.33 Aligned_cols=21 Identities=24% Similarity=0.436 Sum_probs=19.5
Q ss_pred CCCCCHHHHHHHHHHHHhhCC
Q 032677 115 GTPWTEEEHKLFLIGLKKIRQ 135 (136)
Q Consensus 115 g~pWTeeEhrlfL~gL~kyGK 135 (136)
..+||+||...|+.|+++||+
T Consensus 8 r~~WT~EE~~~L~~gV~k~G~ 28 (62)
T 1x58_A 8 RKDFTKEEVNYLFHGVKTMGN 28 (62)
T ss_dssp SSSCCHHHHHHHHHHHHHHCS
T ss_pred CCCCCHHHHHHHHHHHHHHhH
Confidence 368999999999999999996
No 69
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=97.07 E-value=0.00062 Score=43.32 Aligned_cols=24 Identities=29% Similarity=0.464 Sum_probs=21.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCC
Q 032677 112 RKKGTPWTEEEHKLFLIGLKKIRQ 135 (136)
Q Consensus 112 rkkg~pWTeeEhrlfL~gL~kyGK 135 (136)
+++..+||+||+.+|+.++++||.
T Consensus 7 ~~~r~~WT~eED~~L~~~v~~~G~ 30 (69)
T 1ity_A 7 ARKRQAWLWEEDKNLRSGVRKYGE 30 (69)
T ss_dssp SSSCCCCCHHHHHHHHHHHHHHCS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCC
Confidence 445579999999999999999995
No 70
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=97.05 E-value=0.00074 Score=48.21 Aligned_cols=27 Identities=22% Similarity=0.450 Sum_probs=23.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhCCC
Q 032677 110 PERKKGTPWTEEEHKLFLIGLKKIRQG 136 (136)
Q Consensus 110 ~erkkg~pWTeeEhrlfL~gL~kyGKG 136 (136)
..+++..|||.||...|+.|+++||.|
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g 52 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTG 52 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCC
Confidence 345666899999999999999999976
No 71
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.04 E-value=0.00039 Score=47.32 Aligned_cols=23 Identities=17% Similarity=0.290 Sum_probs=20.6
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCC
Q 032677 114 KGTPWTEEEHKLFLIGLKKIRQG 136 (136)
Q Consensus 114 kg~pWTeeEhrlfL~gL~kyGKG 136 (136)
....||+|||++|+.||..|||.
T Consensus 42 ~~~~WT~eE~~~F~~~~~~~gK~ 64 (94)
T 4a69_C 42 VMNMWSEQEKETFREKFMQHPKN 64 (94)
T ss_dssp HTCCCCHHHHHHHHHHHHHSTTC
T ss_pred CCCCCCHHHHHHHHHHHHHcCCC
Confidence 34689999999999999999984
No 72
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=97.02 E-value=0.00045 Score=42.73 Aligned_cols=20 Identities=15% Similarity=0.371 Sum_probs=18.6
Q ss_pred CCCCHHHHHHHHHHHHhhCC
Q 032677 116 TPWTEEEHKLFLIGLKKIRQ 135 (136)
Q Consensus 116 ~pWTeeEhrlfL~gL~kyGK 135 (136)
.+||.||+.+||.++++||.
T Consensus 10 ~~WT~eED~~L~~~v~~~G~ 29 (58)
T 2elk_A 10 ENWGADEELLLIDACETLGL 29 (58)
T ss_dssp CCCCHHHHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHHHHCc
Confidence 47999999999999999994
No 73
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=96.97 E-value=0.00059 Score=40.91 Aligned_cols=21 Identities=24% Similarity=0.313 Sum_probs=19.4
Q ss_pred CCCCHHHHHHHHHHHHhhCCC
Q 032677 116 TPWTEEEHKLFLIGLKKIRQG 136 (136)
Q Consensus 116 ~pWTeeEhrlfL~gL~kyGKG 136 (136)
.+||.||+.+|+.++++||.+
T Consensus 4 ~~Wt~eED~~L~~~v~~~G~~ 24 (52)
T 1guu_A 4 TRWTREEDEKLKKLVEQNGTD 24 (52)
T ss_dssp CCCCHHHHHHHHHHHHHHCSS
T ss_pred CCCCHHHHHHHHHHHHHhCCC
Confidence 589999999999999999973
No 74
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=96.95 E-value=0.00064 Score=42.20 Aligned_cols=20 Identities=20% Similarity=0.340 Sum_probs=18.8
Q ss_pred CCCCHHHHHHHHHHHHhhCC
Q 032677 116 TPWTEEEHKLFLIGLKKIRQ 135 (136)
Q Consensus 116 ~pWTeeEhrlfL~gL~kyGK 135 (136)
.+||.||+.+||.++++||.
T Consensus 9 ~~WT~eED~~L~~~v~~~G~ 28 (60)
T 1x41_A 9 PSWTAQEEMALLEAVMDCGF 28 (60)
T ss_dssp SSSCHHHHHHHHHHHHHTCT
T ss_pred CCCCHHHHHHHHHHHHHHCc
Confidence 68999999999999999994
No 75
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=96.86 E-value=0.0009 Score=40.14 Aligned_cols=20 Identities=30% Similarity=0.571 Sum_probs=18.8
Q ss_pred CCCCHHHHHHHHHHHHhhCC
Q 032677 116 TPWTEEEHKLFLIGLKKIRQ 135 (136)
Q Consensus 116 ~pWTeeEhrlfL~gL~kyGK 135 (136)
.+||+||+.+|+.++.+||.
T Consensus 4 ~~Wt~eED~~L~~~v~~~G~ 23 (52)
T 1gvd_A 4 GPWTKEEDQRLIKLVQKYGP 23 (52)
T ss_dssp CSCCHHHHHHHHHHHHHHCT
T ss_pred CCCCHHHHHHHHHHHHHHCc
Confidence 58999999999999999995
No 76
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=96.70 E-value=0.023 Score=45.32 Aligned_cols=50 Identities=20% Similarity=0.277 Sum_probs=40.9
Q ss_pred CCCCCHHHHHHHHHHHhhCCCCCChHHHHHHHh--CCCCCHHHHHHHHHHHHH
Q 032677 21 STHWNRSEDKLFEHALVMFPEESPDRWQKIASQ--LPGKSAVEVREHYEALVH 71 (136)
Q Consensus 21 ~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~--vpgrt~~qv~~ry~~l~~ 71 (136)
.+.||.-|...|.++|.+|+.- ..||+.|++. |+.|+...++.-|..|++
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~-~~R~e~I~~dA~L~~ks~~~i~~~~~~li~ 54 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNL-KEILDELIADGTLPVKSFEKYGETYDEMME 54 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSC-TTCHHHHHHTTSSCCCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCH-HHHHHHHHHhcccccCCHHHHHHHHHHHHH
Confidence 3579999999999999999852 3599999754 568999888888877754
No 77
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=96.42 E-value=0.0035 Score=38.55 Aligned_cols=20 Identities=25% Similarity=0.451 Sum_probs=18.7
Q ss_pred CCCCHHHHHHHHHHHHhhCC
Q 032677 116 TPWTEEEHKLFLIGLKKIRQ 135 (136)
Q Consensus 116 ~pWTeeEhrlfL~gL~kyGK 135 (136)
.+||+||+.+|+.++.+||.
T Consensus 9 ~~Wt~eED~~L~~~v~~~G~ 28 (60)
T 2d9a_A 9 VKWTHEEDEQLRALVRQFGQ 28 (60)
T ss_dssp SCCCHHHHHHHHHHHHHTCT
T ss_pred CCCCHHHHHHHHHHHHHhCC
Confidence 68999999999999999994
No 78
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=96.29 E-value=0.0033 Score=40.05 Aligned_cols=23 Identities=30% Similarity=0.580 Sum_probs=20.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhC
Q 032677 112 RKKGTPWTEEEHKLFLIGLKKIR 134 (136)
Q Consensus 112 rkkg~pWTeeEhrlfL~gL~kyG 134 (136)
++....||+|.|+.|+.|+..+|
T Consensus 4 ~k~r~~WT~elH~~Fv~Av~~LG 26 (64)
T 1irz_A 4 KKPRVLWTHELHNKFLAAVDHLG 26 (64)
T ss_dssp CCSSCSSCHHHHHHHHHHHHHHC
T ss_pred CCCCCcCCHHHHHHHHHHHHHhC
Confidence 44567899999999999999998
No 79
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.21 E-value=0.0057 Score=38.78 Aligned_cols=21 Identities=19% Similarity=0.469 Sum_probs=19.1
Q ss_pred CCCCCHHHHHHHHHHHHhhCC
Q 032677 115 GTPWTEEEHKLFLIGLKKIRQ 135 (136)
Q Consensus 115 g~pWTeeEhrlfL~gL~kyGK 135 (136)
..+||.||+.+|+.++++||.
T Consensus 9 ~~~Wt~eED~~L~~~v~~~G~ 29 (70)
T 2dim_A 9 GGVWRNTEDEILKAAVMKYGK 29 (70)
T ss_dssp TCCCCHHHHHHHHHHHHHTCS
T ss_pred CCCCCHHHHHHHHHHHHHHCc
Confidence 368999999999999999994
No 80
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=96.08 E-value=0.012 Score=47.79 Aligned_cols=55 Identities=11% Similarity=0.301 Sum_probs=47.1
Q ss_pred CCCCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhC------------CCCCHHHHHHHHHHHHHhHh
Q 032677 20 HSTHWNRSEDKLFEHALVMFPEESPDRWQKIASQL------------PGKSAVEVREHYEALVHDVY 74 (136)
Q Consensus 20 ~~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~v------------pgrt~~qv~~ry~~l~~dv~ 74 (136)
.+..||.+||..|..+|.+|+-+.++.|+.|-..+ -.||+.+|..|...|+.-|.
T Consensus 211 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~tLi~~ie 277 (304)
T 1ofc_X 211 KGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLITLIE 277 (304)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHHHH
Confidence 56789999999999999999987778999998544 27999999999999986443
No 81
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=96.00 E-value=0.033 Score=35.36 Aligned_cols=54 Identities=15% Similarity=0.118 Sum_probs=41.8
Q ss_pred CCCCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhC--CCCCHHHHHHHHHHHHHhHh
Q 032677 20 HSTHWNRSEDKLFEHALVMFPEESPDRWQKIASQL--PGKSAVEVREHYEALVHDVY 74 (136)
Q Consensus 20 ~~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~v--pgrt~~qv~~ry~~l~~dv~ 74 (136)
..-.||.|....|..|+..++.+ .--+..|-+.| +|.|..+|..|.....-.++
T Consensus 6 ~r~~WT~elH~~Fv~Av~~LG~~-~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~ 61 (64)
T 1irz_A 6 PRVLWTHELHNKFLAAVDHLGVE-RAVPKKILDLMNVDKLTRENVASHLQKFRVALK 61 (64)
T ss_dssp SSCSSCHHHHHHHHHHHHHHCTT-TCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHhCCC-CCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Confidence 44579999999999999999842 23477887774 58999999999887654333
No 82
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=95.72 E-value=0.031 Score=44.12 Aligned_cols=27 Identities=7% Similarity=0.233 Sum_probs=25.3
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHh
Q 032677 46 RWQKIASQLPGKSAVEVREHYEALVHD 72 (136)
Q Consensus 46 rW~~IA~~vpgrt~~qv~~ry~~l~~d 72 (136)
.|..||+.+|++|...+++||..++.+
T Consensus 173 ~fk~ia~~~P~HT~~SWRdRyrKfl~~ 199 (246)
T 1ign_A 173 FFKHFAEEHAAHTENAWRDRFRKFLLA 199 (246)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHTHHH
T ss_pred HHHHHHHHCCCCChhhHHHHHHHHHhh
Confidence 899999999999999999999998764
No 83
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=94.66 E-value=0.0018 Score=43.31 Aligned_cols=20 Identities=35% Similarity=0.396 Sum_probs=18.9
Q ss_pred CCCCHHHHHHHHHHHHhhCC
Q 032677 116 TPWTEEEHKLFLIGLKKIRQ 135 (136)
Q Consensus 116 ~pWTeeEhrlfL~gL~kyGK 135 (136)
.+||+||+.+|+.++.+||+
T Consensus 17 ~~WT~eEd~~l~~~~~~~G~ 36 (89)
T 2ltp_A 17 QGWTEEEMGTAKKGLLEHGR 36 (89)
Confidence 68999999999999999996
No 84
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.65 E-value=0.0089 Score=37.41 Aligned_cols=20 Identities=30% Similarity=0.429 Sum_probs=18.6
Q ss_pred CCCCHHHHHHHHHHHHhhCC
Q 032677 116 TPWTEEEHKLFLIGLKKIRQ 135 (136)
Q Consensus 116 ~pWTeeEhrlfL~gL~kyGK 135 (136)
.+||.||+.+|+.+++.||.
T Consensus 10 ~~WT~eED~~L~~~~~~~g~ 29 (66)
T 2din_A 10 TEWSREEEEKLLHLAKLMPT 29 (66)
T ss_dssp CCCCHHHHHHHHHHHHHCTT
T ss_pred CCCCHHHHHHHHHHHHHcCC
Confidence 58999999999999999985
No 85
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=95.63 E-value=0.0089 Score=38.81 Aligned_cols=20 Identities=20% Similarity=-0.036 Sum_probs=18.9
Q ss_pred CCCCHHHHHHHHHHHHhhCC
Q 032677 116 TPWTEEEHKLFLIGLKKIRQ 135 (136)
Q Consensus 116 ~pWTeeEhrlfL~gL~kyGK 135 (136)
.|||+||+.+|+..+++||.
T Consensus 24 ~~wT~EED~~L~~l~~~~G~ 43 (73)
T 2llk_A 24 GKYTPEEIEKLKELRIKHGN 43 (73)
T ss_dssp CSSCHHHHHHHHHHHHHHSS
T ss_pred CCCCHHHHHHHHHHHHHHCC
Confidence 58999999999999999996
No 86
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=93.92 E-value=0.25 Score=36.90 Aligned_cols=54 Identities=15% Similarity=0.302 Sum_probs=41.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhCC------------CC--CHHHHHHHHHHHHHhH
Q 032677 17 AMTHSTHWNRSEDKLFEHALVMFPEESPDRWQKIASQLP------------GK--SAVEVREHYEALVHDV 73 (136)
Q Consensus 17 ~~~~~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~vp------------gr--t~~qv~~ry~~l~~dv 73 (136)
+..-++.||.+||..|...|.+|+-+ +|+.|-.-.- .| ++..+..|...|+.-+
T Consensus 130 ~~~~~~~W~~~~D~~LL~Gi~k~G~g---~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~~l 197 (211)
T 4b4c_A 130 AAHFDIDWGKEDDSNLLIGIYEYGYG---SWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIKLL 197 (211)
T ss_dssp CCCSSSCCCHHHHHHHHHHHHHHCTT---CHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCccHHHHHHHHHHHHHHCcC---cHHHHHhChhcCccccccccccccCCChHHHHHHHHHHHHHH
Confidence 33446789999999999999999964 7999988431 23 4678999988887644
No 87
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=93.78 E-value=0.11 Score=43.20 Aligned_cols=55 Identities=13% Similarity=0.291 Sum_probs=46.9
Q ss_pred CCCCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhCC------------CCCHHHHHHHHHHHHHhHh
Q 032677 20 HSTHWNRSEDKLFEHALVMFPEESPDRWQKIASQLP------------GKSAVEVREHYEALVHDVY 74 (136)
Q Consensus 20 ~~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~vp------------grt~~qv~~ry~~l~~dv~ 74 (136)
....||.+||..|..+|.+|+-+.++.|++|-..|. .||+.++..|...|+.-|.
T Consensus 227 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~tLi~~Ie 293 (374)
T 2y9y_A 227 NKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGNTLLQCLE 293 (374)
T ss_dssp SCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHHHH
Confidence 367899999999999999999877788999976642 7999999999999986443
No 88
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=88.78 E-value=0.46 Score=37.76 Aligned_cols=36 Identities=17% Similarity=0.402 Sum_probs=29.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCCCChHHHHHHHh
Q 032677 15 SFAMTHSTHWNRSEDKLFEHALVMFPEESPDRWQKIASQ 53 (136)
Q Consensus 15 ~~~~~~~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~ 53 (136)
+....-++.|+.+||.+|-..|.+|+-| .|+.|-.-
T Consensus 162 ~~~~~W~c~W~~~dD~~LLvGIykyGyG---~We~Ir~D 197 (270)
T 2xb0_X 162 KPVQNWSSNWTKEEDEKLLIGVFKYGYG---SWTQIRDD 197 (270)
T ss_dssp CCCTTSSSCCCHHHHHHHHHHHHHHCTT---CHHHHHHC
T ss_pred CCCCCCCCCcChHHHHHHHHHHHHHcCC---cHHHHhcC
Confidence 3444456889999999999999999975 79999865
No 89
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=87.55 E-value=3.4 Score=26.58 Aligned_cols=54 Identities=7% Similarity=0.094 Sum_probs=43.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhCCCCCHHHHHHHHHHHH
Q 032677 16 FAMTHSTHWNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEALV 70 (136)
Q Consensus 16 ~~~~~~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~l~ 70 (136)
++++.....|.++...|+.++...+--+...=+.||..+ |-|..||.-=|.+-.
T Consensus 2 ~~g~~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~t-gLte~qIkvWFqNrR 55 (76)
T 2ecc_A 2 SSGSSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQIT-GLPRPEIIQWFGDTR 55 (76)
T ss_dssp CCSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHT-CCCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH-CcCHHHhhHHhHhhH
Confidence 466778899999999999999886654566678899999 899999987666654
No 90
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=70.39 E-value=15 Score=22.20 Aligned_cols=50 Identities=10% Similarity=0.100 Sum_probs=39.2
Q ss_pred CCCCCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhCCCCCHHHHHHHHHHH
Q 032677 19 THSTHWNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEAL 69 (136)
Q Consensus 19 ~~~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~l 69 (136)
.....+|.++...|+.++...+--+...=+.||..+ |-|..+|.-=|.+-
T Consensus 9 r~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l-~l~~~qV~~WFqNr 58 (70)
T 2dmu_A 9 RHRTIFTDEQLEALENLFQETKYPDVGTREQLARKV-HLREEKVEVWFKNR 58 (70)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-TCCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHH-CCCHHHeehccccc
Confidence 345679999999999999886654455668899998 89999987655554
No 91
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=68.18 E-value=3.3 Score=27.81 Aligned_cols=19 Identities=16% Similarity=0.351 Sum_probs=17.7
Q ss_pred CCCCHHHHHHHHHHHHhhC
Q 032677 116 TPWTEEEHKLFLIGLKKIR 134 (136)
Q Consensus 116 ~pWTeeEhrlfL~gL~kyG 134 (136)
.+||.||...|+.-.++||
T Consensus 31 ~~WTkEETd~Lf~L~~~fd 49 (93)
T 3hm5_A 31 DAWTKAETDHLFDLSRRFD 49 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHhC
Confidence 5899999999999999997
No 92
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=67.84 E-value=19 Score=22.24 Aligned_cols=50 Identities=10% Similarity=0.062 Sum_probs=39.7
Q ss_pred CCCCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhCCCCCHHHHHHHHHHHH
Q 032677 20 HSTHWNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEALV 70 (136)
Q Consensus 20 ~~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~l~ 70 (136)
.....|.++...|+.++...+--+...=+.||..+ |-|..+|.-=|.+-.
T Consensus 11 ~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~-~l~~~qV~~WFqNrR 60 (76)
T 2dn0_A 11 YKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVT-GLSTREVRKWFSDRR 60 (76)
T ss_dssp CCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHH-CCCHHHHHHHHHHHH
T ss_pred CCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHh-CCChHHhhHHhHHHh
Confidence 35679999999999999886544455568899998 899999987666654
No 93
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=65.26 E-value=22 Score=22.09 Aligned_cols=52 Identities=10% Similarity=0.080 Sum_probs=40.7
Q ss_pred CCCCCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 032677 19 THSTHWNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEALVH 71 (136)
Q Consensus 19 ~~~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~l~~ 71 (136)
.....+|.++...|+.++...+--+...=+.||..+ |-+..+|.-=|.+-..
T Consensus 9 r~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~~WFqNRR~ 60 (80)
T 2dms_A 9 RERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKI-NLPESRVQVWFKNRRA 60 (80)
T ss_dssp CCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHT-TCCHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHH-CcCHHHhhhhhHHHhH
Confidence 345679999999999999886654455568899999 8999999876766544
No 94
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=63.80 E-value=22 Score=21.51 Aligned_cols=54 Identities=13% Similarity=0.100 Sum_probs=39.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhCCCCCHHHHHHHHHHHH
Q 032677 16 FAMTHSTHWNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEALV 70 (136)
Q Consensus 16 ~~~~~~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~l~ 70 (136)
+++....+=+.++...||.++...+.-+...=+.||..+ |-+..+|.-=|.+-.
T Consensus 2 ~sg~~~~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l-~L~e~qVqvWFqNRR 55 (64)
T 2e19_A 2 SSGSSGQPPLKNLLSLLKAYYALNAQPSAEELSKIADSV-NLPLDVVKKWFEKMQ 55 (64)
T ss_dssp CCSCSCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHH-TCCHHHHHHHHHHHH
T ss_pred CCCCCCCCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHh-CcChhhcCcchhccc
Confidence 455666677899999999998875543344457799998 899999876665543
No 95
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=63.79 E-value=22 Score=21.52 Aligned_cols=49 Identities=14% Similarity=0.184 Sum_probs=38.9
Q ss_pred CCCCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhCCCCCHHHHHHHHHHH
Q 032677 20 HSTHWNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEAL 69 (136)
Q Consensus 20 ~~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~l 69 (136)
....+|.++...|+.++...+--+...=+.||..+ |-|..+|.-=|.+-
T Consensus 10 ~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~~WFqNr 58 (70)
T 2e1o_A 10 GQVRFSNDQTIELEKKFETQKYLSPPERKRLAKML-QLSERQVKTWFQNR 58 (70)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHT-TCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHH-CCCHHHhhHhhHhh
Confidence 44679999999999999886654455668899999 89999987666554
No 96
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=62.76 E-value=25 Score=22.66 Aligned_cols=51 Identities=10% Similarity=0.130 Sum_probs=38.9
Q ss_pred CCCCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhCCC---------------CCHHHHHHHHHHHHH
Q 032677 20 HSTHWNRSEDKLFEHALVMFPEESPDRWQKIASQLPG---------------KSAVEVREHYEALVH 71 (136)
Q Consensus 20 ~~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~vpg---------------rt~~qv~~ry~~l~~ 71 (136)
....||.++...||.++..-+--+...=+.||..+ + -|..+|..=|.+-..
T Consensus 10 ~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l-~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~ 75 (95)
T 2cuf_A 10 SRFTWRKECLAVMESYFNENQYPDEAKREEIANAC-NAVIQKPGKKLSDLERVTSLKVYNWFANRRK 75 (95)
T ss_dssp CSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-HHHHCCTTCCCCTTTCCCHHHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-CchhhcccccccccCcCCHHHHHHHHHHHHH
Confidence 45679999999999999886544455568899988 5 788888766666544
No 97
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=62.75 E-value=22 Score=21.35 Aligned_cols=51 Identities=6% Similarity=0.120 Sum_probs=39.7
Q ss_pred CCCCCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhCCCCCHHHHHHHHHHHH
Q 032677 19 THSTHWNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEALV 70 (136)
Q Consensus 19 ~~~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~l~ 70 (136)
.....+|.++...|+.++...+--+...=+.||..+ |-|..+|.-=|.+-.
T Consensus 9 r~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l-~l~~~qV~~WFqNrR 59 (70)
T 2da2_A 9 SSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLL-NLPTRVIVVWFQNAR 59 (70)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHS-CCCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHh-CCCHHHhHHhhHhhh
Confidence 345679999999999999886654455668899999 899999876665543
No 98
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=62.11 E-value=21 Score=20.83 Aligned_cols=48 Identities=8% Similarity=0.097 Sum_probs=35.9
Q ss_pred CCCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhCCCCCHHHHHHHHHHH
Q 032677 21 STHWNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEAL 69 (136)
Q Consensus 21 ~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~l 69 (136)
...+|.++...|+.++...+--+...=+.||..+ |-|..+|.-=|.+-
T Consensus 3 Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~~WFqNr 50 (60)
T 3a02_A 3 HMTFTSFQLEELEKAFSRTHYPDVFTREELAMKI-GLTEARIQVWFQNR 50 (60)
T ss_dssp --CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-TSCHHHHHHHHHHH
T ss_pred CcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHH-CcCHHHHHHHhhhh
Confidence 4568999999999999886543444557899998 89999987655553
No 99
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=61.80 E-value=26 Score=21.77 Aligned_cols=49 Identities=6% Similarity=0.123 Sum_probs=37.7
Q ss_pred CCCCCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhCCCCCHHHHHHHHHH
Q 032677 19 THSTHWNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEA 68 (136)
Q Consensus 19 ~~~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~ 68 (136)
.....+|.++...|+.++...+--+...=+.||..+ |-|..+|.-=|.+
T Consensus 9 r~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l-~l~~~qV~vWFqN 57 (80)
T 2cue_A 9 RNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKI-DLPEARIQVWFSN 57 (80)
T ss_dssp CCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHT-TCCHHHHHHHHHH
T ss_pred CCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHh-CCCHHHhhHHHHH
Confidence 345679999999999999876543455568899999 8999998654444
No 100
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=61.58 E-value=7.6 Score=23.53 Aligned_cols=18 Identities=17% Similarity=0.233 Sum_probs=17.0
Q ss_pred CCCCHHHHHHHHHHHHhh
Q 032677 116 TPWTEEEHKLFLIGLKKI 133 (136)
Q Consensus 116 ~pWTeeEhrlfL~gL~ky 133 (136)
+++|+||+..++.-+.+|
T Consensus 3 ~~FT~edD~~L~~~v~~~ 20 (59)
T 1fex_A 3 IAFTDADDVAILTYVKEN 20 (59)
T ss_dssp CCCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 689999999999999988
No 101
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=61.38 E-value=26 Score=21.64 Aligned_cols=50 Identities=6% Similarity=0.150 Sum_probs=39.1
Q ss_pred CCCCCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhCCCCCHHHHHHHHHHH
Q 032677 19 THSTHWNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEAL 69 (136)
Q Consensus 19 ~~~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~l 69 (136)
.....+|.++...|+.++...+.-+...=+.||..+ |-+..+|.-=|.+-
T Consensus 9 r~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~~WFqNr 58 (80)
T 2dmq_A 9 RMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKT-GLTKRVLQVWFQNA 58 (80)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHT-CCCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHh-CCCHHHhhHccHHH
Confidence 345679999999999999886654456678999999 89999987655554
No 102
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=60.90 E-value=25 Score=21.24 Aligned_cols=50 Identities=10% Similarity=0.120 Sum_probs=39.5
Q ss_pred CCCCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhCCCCCHHHHHHHHHHHH
Q 032677 20 HSTHWNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEALV 70 (136)
Q Consensus 20 ~~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~l~ 70 (136)
....+|.++...||.++...+--+...=+.||..+ |-|..+|.-=|.+-.
T Consensus 10 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l-~l~~~qV~~WFqNRR 59 (70)
T 2cra_A 10 KRIPYSKGQLRELEREYAANKFITKDKRRKISAAT-SLSERQITIWFQNRR 59 (70)
T ss_dssp SCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHT-CCCHHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-CCCHHHhhHhhHhHH
Confidence 34679999999999999886654455568899999 899999987666644
No 103
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=60.09 E-value=24 Score=20.82 Aligned_cols=49 Identities=14% Similarity=0.295 Sum_probs=36.5
Q ss_pred CCCCCCCHHHHHHHHHHH---hhCCCCCChHHHHHHHhCCCCCHHHHHHHHHH
Q 032677 19 THSTHWNRSEDKLFEHAL---VMFPEESPDRWQKIASQLPGKSAVEVREHYEA 68 (136)
Q Consensus 19 ~~~~~WT~eEdk~le~al---~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~ 68 (136)
.....+|.+....|+..+ ...|--+...=+.||..+ |-|..||..=|.+
T Consensus 5 r~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~-~L~~~qV~~WFqN 56 (64)
T 1du6_A 5 IEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKC-GITVSQVSNWFGN 56 (64)
T ss_dssp CCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHH-TSCHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHH-CcCHHHHHHHHHH
Confidence 345678999999999999 444433345567899998 8999999765554
No 104
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=59.55 E-value=26 Score=21.05 Aligned_cols=50 Identities=8% Similarity=0.171 Sum_probs=39.0
Q ss_pred CCCCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhCCCCCHHHHHHHHHHHH
Q 032677 20 HSTHWNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEALV 70 (136)
Q Consensus 20 ~~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~l~ 70 (136)
....+|.++...|+.++...+--+...=+.||..+ |-|..+|.-=|.+-.
T Consensus 10 ~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l-~l~~~qV~~WFqNrR 59 (70)
T 2da1_A 10 PRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKS-GLPQKVIKHWFRNTL 59 (70)
T ss_dssp CSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHH-CCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHh-CCCHHHHHHHhhhhh
Confidence 45679999999999999775543455668899998 899999876666543
No 105
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=58.40 E-value=28 Score=21.01 Aligned_cols=50 Identities=10% Similarity=0.088 Sum_probs=39.1
Q ss_pred CCCCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhCCCCCHHHHHHHHHHHH
Q 032677 20 HSTHWNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEALV 70 (136)
Q Consensus 20 ~~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~l~ 70 (136)
....+|.++...|+.++...+--+...=+.||..+ |-|..+|.-=|.+-.
T Consensus 10 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~~WFqNrR 59 (70)
T 2djn_A 10 PRTIYSSFQLAALQRRFQKTQYLALPERAELAASL-GLTQTQVKIWFQNKR 59 (70)
T ss_dssp SSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHS-SCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHh-CCCHHHHHHHHHHHh
Confidence 45679999999999999886543445568899998 899999987666644
No 106
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=57.84 E-value=33 Score=21.69 Aligned_cols=50 Identities=14% Similarity=0.165 Sum_probs=37.6
Q ss_pred CCCCCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhCCCCCHHHHHHHHHHH
Q 032677 19 THSTHWNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEAL 69 (136)
Q Consensus 19 ~~~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~l 69 (136)
.....+|.++...||.++...+--+...=+.||..+ |-|..+|.-=|.+-
T Consensus 30 r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~vWFqNR 79 (88)
T 2r5y_A 30 RQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHAL-SLTERQIKIWFQNR 79 (88)
T ss_dssp -CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHT-TCCHHHHHHHHHHH
T ss_pred CCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHh-CcCHHHhhHHhHHH
Confidence 345679999999999999875543344557899998 89999987655553
No 107
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=57.33 E-value=30 Score=21.23 Aligned_cols=49 Identities=10% Similarity=0.127 Sum_probs=37.9
Q ss_pred CCCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhCCCCCHHHHHHHHHHHH
Q 032677 21 STHWNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEALV 70 (136)
Q Consensus 21 ~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~l~ 70 (136)
...+|.++...|+.++...+.-+...=+.||..+ |-+..+|.-=|.+-.
T Consensus 21 Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l-~l~~~qV~~WFqNrR 69 (80)
T 2da3_A 21 RTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEV-GLKKRVVQVWFQNTR 69 (80)
T ss_dssp CSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHH-TSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-CcCHHHhHHHhHHHH
Confidence 3568999999999999886543445567899999 899999876666543
No 108
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=57.04 E-value=26 Score=20.19 Aligned_cols=47 Identities=13% Similarity=0.106 Sum_probs=37.2
Q ss_pred CCCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhCCCCCHHHHHHHHHH
Q 032677 21 STHWNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEA 68 (136)
Q Consensus 21 ~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~ 68 (136)
...+|.++...|+.++...+--+...=+.||..+ |-|..+|.-=|.+
T Consensus 4 Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~~WFqN 50 (58)
T 1ig7_A 4 RTPFTTAQLLALERKFRQKQYLSIAERAEFSSSL-SLTETQVKIWFQN 50 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHT-TCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHH-CcCHHHhhhhhhH
Confidence 4568999999999999886654455668899999 8999998765554
No 109
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=55.75 E-value=28 Score=20.31 Aligned_cols=47 Identities=13% Similarity=0.204 Sum_probs=37.0
Q ss_pred CCCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhCCCCCHHHHHHHHHH
Q 032677 21 STHWNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEA 68 (136)
Q Consensus 21 ~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~ 68 (136)
...+|.++...|+.++...+--+...=+.||..+ |-|..+|.-=|.+
T Consensus 7 Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~~WFqN 53 (61)
T 2hdd_A 7 RTAFSSEQLARLKREFNENRYLTERRRQQLSSEL-GLNEAQIKIWFKN 53 (61)
T ss_dssp CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-TCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHH-CcCHHHHHHHhhh
Confidence 4569999999999999886654455668899998 8999998755544
No 110
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=55.72 E-value=28 Score=20.24 Aligned_cols=48 Identities=10% Similarity=0.158 Sum_probs=35.5
Q ss_pred CCCCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhCCCCCHHHHHHHHHH
Q 032677 20 HSTHWNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEA 68 (136)
Q Consensus 20 ~~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~ 68 (136)
....+|.++...|+.++...+--+...=+.||..+ |-|..+|.-=|.+
T Consensus 8 ~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~-~l~~~qV~~WFqN 55 (61)
T 1akh_A 8 GKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKC-GITPLQVRVWFIN 55 (61)
T ss_dssp ----CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-TSCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHH-CcCHHHHHHHHHH
Confidence 34679999999999999887654455668899998 8999998765544
No 111
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=54.84 E-value=29 Score=20.18 Aligned_cols=47 Identities=17% Similarity=0.174 Sum_probs=37.1
Q ss_pred CCCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhCCCCCHHHHHHHHHH
Q 032677 21 STHWNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEA 68 (136)
Q Consensus 21 ~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~ 68 (136)
...+|.++...|+.++...+--+...=+.||..+ |-|..+|.-=|.+
T Consensus 5 Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~~WFqN 51 (60)
T 1jgg_A 5 RTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQL-NLPESTIKVWFQN 51 (60)
T ss_dssp CCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHH-TSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH-CcCHHHHHHhhHH
Confidence 4568999999999999886654455568899998 8999998765554
No 112
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=54.81 E-value=36 Score=22.20 Aligned_cols=52 Identities=21% Similarity=0.380 Sum_probs=34.4
Q ss_pred CCCCCCHHHHHHHHHHHhhCCCCC------------ChHHHHHHHhC-----CCCCHHHHHHHHHHHHH
Q 032677 20 HSTHWNRSEDKLFEHALVMFPEES------------PDRWQKIASQL-----PGKSAVEVREHYEALVH 71 (136)
Q Consensus 20 ~~~~WT~eEdk~le~al~~~~~~~------------~~rW~~IA~~v-----pgrt~~qv~~ry~~l~~ 71 (136)
....|+++=...|..||+.||+.. +.|=+-||..+ .-||.+||-.|-.-|..
T Consensus 5 ~e~vW~~~lE~aF~eaL~~yp~~g~~k~~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQvlk~ 73 (82)
T 2hzd_A 5 AEGVWSPDIEQSFQEALSIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLAR 73 (82)
T ss_dssp GSCCSCHHHHHHHHHHHHHSCSSSCCCCCHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHHHHH
T ss_pred cCCcCCHHHHHHHHHHHHHcCCCCccceeecccccccchhHHHHHHHHHHHcccCCccchhHHHHHHHH
Confidence 467899988899999999999631 12222333332 23677788777776654
No 113
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.33 E-value=36 Score=21.08 Aligned_cols=50 Identities=18% Similarity=0.123 Sum_probs=38.8
Q ss_pred CCCCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhCCCCCHHHHHHHHHHHH
Q 032677 20 HSTHWNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEALV 70 (136)
Q Consensus 20 ~~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~l~ 70 (136)
....+|.++...|+.++...+--+...=+.||..+ |-|..+|.-=|.+-.
T Consensus 20 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l-~L~~~qV~vWFqNRR 69 (80)
T 2dmt_A 20 SRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESL-GLSQLQVKTWYQNRR 69 (80)
T ss_dssp SCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-CCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHh-CCCHHHeeeccHHHH
Confidence 34569999999999999886654445568899998 899999986666543
No 114
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=54.01 E-value=38 Score=21.30 Aligned_cols=51 Identities=6% Similarity=0.143 Sum_probs=38.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHhh---CCCCCChHHHHHHHhCCCCCHHHHHHHHHH
Q 032677 17 AMTHSTHWNRSEDKLFEHALVM---FPEESPDRWQKIASQLPGKSAVEVREHYEA 68 (136)
Q Consensus 17 ~~~~~~~WT~eEdk~le~al~~---~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~ 68 (136)
.......+|.++...|+..+.. .|--+...=+.||..+ |-|..||.-=|.+
T Consensus 27 ~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~-gL~~~qV~~WFqN 80 (87)
T 1mnm_C 27 KPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNT-SLSRIQIKNWVSN 80 (87)
T ss_dssp SCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHH-CCCHHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHH-CcCHHHHHHHHHH
Confidence 3345678999999999999998 5543444457789988 8999998765554
No 115
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=53.81 E-value=12 Score=25.19 Aligned_cols=21 Identities=24% Similarity=0.357 Sum_probs=18.0
Q ss_pred CCCCCCHHHHHHHHHHHHhhC
Q 032677 114 KGTPWTEEEHKLFLIGLKKIR 134 (136)
Q Consensus 114 kg~pWTeeEhrlfL~gL~kyG 134 (136)
+-+-||.||+|-.|...++=|
T Consensus 32 ~VvlWTRe~DR~IL~~cQ~~G 52 (95)
T 1ug2_A 32 KVVLWTREADRVILTMCQEQG 52 (95)
T ss_dssp CCSSSCHHHHHHHHHHHHHTT
T ss_pred EEEEeccccCHHHHHHHHhcC
Confidence 357999999999999988765
No 116
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=52.78 E-value=34 Score=20.30 Aligned_cols=49 Identities=12% Similarity=0.094 Sum_probs=38.1
Q ss_pred CCCCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhCCCCCHHHHHHHHHHH
Q 032677 20 HSTHWNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEAL 69 (136)
Q Consensus 20 ~~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~l 69 (136)
....+|.++...|+.++...+--+...=+.||..+ |-|..+|.-=|.+-
T Consensus 6 ~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~~WFqNr 54 (66)
T 1bw5_A 6 VRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMT-GLSPRVIRVWFQNK 54 (66)
T ss_dssp CCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHH-TSCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHH-CcCHHHHHHHhHHH
Confidence 35679999999999999886654445567899998 89999987655553
No 117
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=52.51 E-value=35 Score=20.32 Aligned_cols=49 Identities=10% Similarity=0.129 Sum_probs=38.7
Q ss_pred CCCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhCCCCCHHHHHHHHHHHH
Q 032677 21 STHWNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEALV 70 (136)
Q Consensus 21 ~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~l~ 70 (136)
...+|.++...|+.++...+--+...=+.||..+ |-|..+|.-=|.+-.
T Consensus 5 Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~~WFqNrR 53 (67)
T 2k40_A 5 RTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKL-NLELDRIQIWFQNRR 53 (67)
T ss_dssp SCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHH-TCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-CcCHHHhhHhhHhHH
Confidence 4569999999999999886654455668899998 899999887666654
No 118
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=51.92 E-value=36 Score=20.38 Aligned_cols=49 Identities=12% Similarity=0.160 Sum_probs=38.0
Q ss_pred CCCCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhCCCCCHHHHHHHHHHH
Q 032677 20 HSTHWNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEAL 69 (136)
Q Consensus 20 ~~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~l 69 (136)
....+|.++...|+.++...+--+...-..||..+ |-|..+|.-=|.+-
T Consensus 5 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~~WFqNR 53 (68)
T 1zq3_P 5 TRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKL-ALGTAQVKIWFKNR 53 (68)
T ss_dssp CSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHH-TSCHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHh-CcCHHHhhHhhHHH
Confidence 34579999999999999886544455678899998 89999987555543
No 119
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.10 E-value=50 Score=22.19 Aligned_cols=50 Identities=10% Similarity=0.171 Sum_probs=37.6
Q ss_pred CCCCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhCC--------------------CCCHHHHHHHHHHH
Q 032677 20 HSTHWNRSEDKLFEHALVMFPEESPDRWQKIASQLP--------------------GKSAVEVREHYEAL 69 (136)
Q Consensus 20 ~~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~vp--------------------grt~~qv~~ry~~l 69 (136)
....||.+....|++++..-+--+...-+.||..+. ..|..+|..=|.+-
T Consensus 9 ~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNR 78 (102)
T 2da6_A 9 NRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANR 78 (102)
T ss_dssp CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHH
T ss_pred CCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecch
Confidence 456799999999999998865444567889999982 46777776655554
No 120
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=50.00 E-value=43 Score=20.71 Aligned_cols=49 Identities=10% Similarity=0.091 Sum_probs=37.9
Q ss_pred CCCCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhCCCCCHHHHHHHHHHH
Q 032677 20 HSTHWNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEAL 69 (136)
Q Consensus 20 ~~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~l 69 (136)
....+|.++...|+.++...+--+...=..||..+ |-+..+|.-=|.+-
T Consensus 21 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l-~l~~~qV~~WFqNr 69 (81)
T 1fjl_A 21 SRTTFSASQLDELERAFERTQYPDIYTREELAQRT-NLTEARIQVWFQNR 69 (81)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-TCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH-CcCHHHHHHHHHHH
Confidence 44679999999999999886644445567899998 89999987655543
No 121
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=49.56 E-value=38 Score=19.91 Aligned_cols=49 Identities=14% Similarity=0.154 Sum_probs=37.7
Q ss_pred CCCCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhCCCCCHHHHHHHHHHH
Q 032677 20 HSTHWNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEAL 69 (136)
Q Consensus 20 ~~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~l 69 (136)
....+|.++...|+.++...+--+...=..||..+ |-|..+|.-=|.+-
T Consensus 6 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l-~l~~~qV~~WFqNr 54 (63)
T 2h1k_A 6 TRTAYTRAQLLELEKEFLFNKYISRPRRVELAVML-NLTERHIKIWFQNR 54 (63)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-TCCHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHh-CcCHHHhhHHHHhh
Confidence 45679999999999999876543445568899998 89999987655543
No 122
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=48.33 E-value=44 Score=20.29 Aligned_cols=52 Identities=10% Similarity=0.125 Sum_probs=38.1
Q ss_pred CCCCCCCCHHHHHHHHHHHhh-CCCCCChHHHHHHHhCCCCCHHHHHHHHHHHH
Q 032677 18 MTHSTHWNRSEDKLFEHALVM-FPEESPDRWQKIASQLPGKSAVEVREHYEALV 70 (136)
Q Consensus 18 ~~~~~~WT~eEdk~le~al~~-~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~l~ 70 (136)
+.....+|.++...|+.++.+ .+--+...=+.||..+ |-|..+|.-=|.+-.
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~-~l~~~qV~~WFqNRR 55 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEA-GLTEEQTQKWFKQRL 55 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHH-TSCHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-CcCHHHHHHHHHHHH
Confidence 344567999999999999875 4432344457899998 899999876555543
No 123
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=48.00 E-value=39 Score=19.57 Aligned_cols=47 Identities=6% Similarity=0.165 Sum_probs=36.0
Q ss_pred CCCCHHHHHHHHHHHhh---CCCCCChHHHHHHHhCCCCCHHHHHHHHHHH
Q 032677 22 THWNRSEDKLFEHALVM---FPEESPDRWQKIASQLPGKSAVEVREHYEAL 69 (136)
Q Consensus 22 ~~WT~eEdk~le~al~~---~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~l 69 (136)
..+|.++...|+..+.. .|--+...=+.||..+ |-|..||..=|.+-
T Consensus 3 ~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~-gl~~~qV~~WFqNr 52 (60)
T 1k61_A 3 HRFTKENVRILESWFAKNIENPYLDTKGLENLMKNT-SLSRIQIKNWVSNR 52 (60)
T ss_dssp CSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHH-CCCHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHH-CcCHHHHHHHHHHH
Confidence 56899999999999988 5543444557889998 89999987655543
No 124
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=47.89 E-value=42 Score=20.01 Aligned_cols=49 Identities=14% Similarity=0.130 Sum_probs=38.0
Q ss_pred CCCCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhCCCCCHHHHHHHHHHH
Q 032677 20 HSTHWNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEAL 69 (136)
Q Consensus 20 ~~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~l 69 (136)
....+|.++...|+.++...+--+...=+.||..+ |-|..+|.-=|.+-
T Consensus 6 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~~WFqNr 54 (68)
T 1yz8_P 6 QRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWT-NLTEARVRVWFKNR 54 (68)
T ss_dssp SCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHT-TSCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHH-CcCHHHHHHHHHHH
Confidence 45679999999999999885543444568899999 89999987655554
No 125
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.38 E-value=35 Score=21.11 Aligned_cols=50 Identities=10% Similarity=0.038 Sum_probs=37.5
Q ss_pred CCCCCCHHHHHHHHHHHhhC----CCCCChHHHHHHHhCCCCCHHHHHHHHHHHH
Q 032677 20 HSTHWNRSEDKLFEHALVMF----PEESPDRWQKIASQLPGKSAVEVREHYEALV 70 (136)
Q Consensus 20 ~~~~WT~eEdk~le~al~~~----~~~~~~rW~~IA~~vpgrt~~qv~~ry~~l~ 70 (136)
....+|.++...|+.++... +--+...=+.||..+ |-+..+|.-=|.+-.
T Consensus 11 ~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~l-gL~~~qV~vWFqNrR 64 (80)
T 2da4_A 11 DRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATEL-NVDCEIVRTWIGNRR 64 (80)
T ss_dssp SSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHH-TCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHh-CCCHHHhhHhHHHHH
Confidence 44568999999999999877 432234457889998 899999876666654
No 126
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=46.23 E-value=47 Score=20.00 Aligned_cols=56 Identities=7% Similarity=0.000 Sum_probs=40.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 032677 15 SFAMTHSTHWNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEALVH 71 (136)
Q Consensus 15 ~~~~~~~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~l~~ 71 (136)
...-.....+|.++...|+..+...+--+...=..||..+ |-+..+|.-=|.+-..
T Consensus 7 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~~WFqNrR~ 62 (75)
T 2m0c_A 7 GKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRT-DLTEARVQVWFQNRRA 62 (75)
T ss_dssp SCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-TCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHh-CCCHHHHHHHhHHHHH
Confidence 3334455679999999999998875532334446788888 8999998877766543
No 127
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=45.75 E-value=48 Score=20.02 Aligned_cols=52 Identities=4% Similarity=-0.018 Sum_probs=39.4
Q ss_pred CCCCCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 032677 19 THSTHWNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEALVH 71 (136)
Q Consensus 19 ~~~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~l~~ 71 (136)
.....+|.++...|+..+...+--+...=+.||..+ |-+..+|.-=|.+-..
T Consensus 8 ~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~~WFqNrR~ 59 (74)
T 2ly9_A 8 GIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKIT-GLTKGEIKKWFSDTRY 59 (74)
T ss_dssp CTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred CCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHh-CcCHHHeeeCChhHhH
Confidence 345779999999999998875543344457889988 8999999877776543
No 128
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=45.72 E-value=40 Score=23.13 Aligned_cols=44 Identities=11% Similarity=0.171 Sum_probs=30.6
Q ss_pred HHHHHHhhCCC----CCChHHHHHHHhCCCCCHHHHHHHHHHHHHhHh
Q 032677 31 LFEHALVMFPE----ESPDRWQKIASQLPGKSAVEVREHYEALVHDVY 74 (136)
Q Consensus 31 ~le~al~~~~~----~~~~rW~~IA~~vpgrt~~qv~~ry~~l~~dv~ 74 (136)
.|-.++.+.+. .....|..||..|.--+...++.+|..++....
T Consensus 52 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~yE 99 (123)
T 1kkx_A 52 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPYE 99 (123)
T ss_dssp HHHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHHHH
Confidence 34455555553 124689999999965558899999999875433
No 129
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.13 E-value=64 Score=20.43 Aligned_cols=45 Identities=22% Similarity=0.395 Sum_probs=33.0
Q ss_pred CCCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 032677 21 STHWNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEALVH 71 (136)
Q Consensus 21 ~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~l~~ 71 (136)
.-.||.++...+...+.. .+-++.+. .-++-|..+|+..|..|.-
T Consensus 9 ~~~~s~~~~~~~~~~~~~-----~~~y~iLg-v~~~as~~eIk~aYr~la~ 53 (90)
T 2ys8_A 9 SASFTKEQADAIRRIRNS-----KDSWDMLG-VKPGASRDEVNKAYRKLAV 53 (90)
T ss_dssp CCCCCHHHHHHHHHHHTC-----SSHHHHHT-CCTTCCHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHhcC-----CCHHHHcC-cCCCCCHHHHHHHHHHHHH
Confidence 457999999988876532 34455555 3357899999999999974
No 130
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=42.09 E-value=48 Score=18.97 Aligned_cols=46 Identities=15% Similarity=0.201 Sum_probs=33.9
Q ss_pred CCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhCCCCCHHHHHHHHHH
Q 032677 22 THWNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEA 68 (136)
Q Consensus 22 ~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~ 68 (136)
..+|.++...|+.++...+--+...=..||..+ |-|..+|.-=|.+
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l-~l~~~qV~~WFqN 47 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKAL-RMTDAQVKTWFQN 47 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-TCCHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHh-CcCHHHhhHhhHH
Confidence 358999999999998876543444457899998 8999998754444
No 131
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=41.83 E-value=43 Score=23.32 Aligned_cols=40 Identities=13% Similarity=0.057 Sum_probs=31.9
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 032677 28 EDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEALVH 71 (136)
Q Consensus 28 Edk~le~al~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~l~~ 71 (136)
-|..+..+|..-+. -.+..||+.+ |-|...|+.|.+.|.+
T Consensus 4 ~d~~il~~L~~~~~---~s~~~la~~l-g~s~~tv~~rl~~L~~ 43 (162)
T 3i4p_A 4 LDRKILRILQEDST---LAVADLAKKV-GLSTTPCWRRIQKMEE 43 (162)
T ss_dssp HHHHHHHHHTTCSC---SCHHHHHHHH-TCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCC---CCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 35556677766543 3699999999 9999999999999985
No 132
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=41.06 E-value=60 Score=19.83 Aligned_cols=49 Identities=10% Similarity=0.124 Sum_probs=38.1
Q ss_pred CCCCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhCCCCCHHHHHHHHHHH
Q 032677 20 HSTHWNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEAL 69 (136)
Q Consensus 20 ~~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~l 69 (136)
....+|.++...|+.++...+--+...=+.||..+ |-|..+|.-=|.+-
T Consensus 12 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~~WFqNR 60 (77)
T 1nk2_P 12 RRVLFTKAQTYELERRFRQQRYLSAPEREHLASLI-RLTPTQVKIWFQNH 60 (77)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHT-TCCHHHHHHHHHHH
T ss_pred CCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHh-CCCHHHHHHHhHHh
Confidence 34579999999999999886544445568899999 89999987655554
No 133
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=40.06 E-value=55 Score=19.05 Aligned_cols=47 Identities=15% Similarity=0.129 Sum_probs=35.6
Q ss_pred CCCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhCCCCCHHHHHHHHHH
Q 032677 21 STHWNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEA 68 (136)
Q Consensus 21 ~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~ 68 (136)
...+|.++...|+.++...+--+...=+.||..+ |-|..+|.-=|.+
T Consensus 7 Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l-~l~~~qV~~WFqN 53 (62)
T 2vi6_A 7 RTVFSQAQLCALKDRFQKQKYLSLQQMQELSSIL-NLSYKQVKTWFQN 53 (62)
T ss_dssp -CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHH-TCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHh-CCCHHHhhHHhHH
Confidence 4569999999999999886543344457899998 8999998765544
No 134
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=39.41 E-value=48 Score=21.01 Aligned_cols=42 Identities=14% Similarity=0.188 Sum_probs=32.2
Q ss_pred HHHHHHHHhhCCCCCChHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 032677 29 DKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEALVH 71 (136)
Q Consensus 29 dk~le~al~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~l~~ 71 (136)
+..+..+|...+.|..-.=..||..+ |-+...|..+-..|.+
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~L-gvsr~tV~~~L~~Le~ 53 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKL-GTPKKEINRVLYSLAK 53 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHH-TCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 44455777777755555678999999 8999999988888864
No 135
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=39.05 E-value=47 Score=20.63 Aligned_cols=46 Identities=13% Similarity=0.188 Sum_probs=33.7
Q ss_pred CHHHHHHHHHHHhhCCCCCChHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 032677 25 NRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEALVH 71 (136)
Q Consensus 25 T~eEdk~le~al~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~l~~ 71 (136)
|.+.+..+..+|...+.+..-.=..||+.+ |.+...|..+-..|.+
T Consensus 12 ~~~~~~~IL~~L~~~~~~~~~t~~eLA~~L-gvs~~tV~~~L~~L~~ 57 (77)
T 1qgp_A 12 YQDQEQRILKFLEELGEGKATTAHDLSGKL-GTPKKEINRVLYSLAK 57 (77)
T ss_dssp HHHHHHHHHHHHHHHCSSSCEEHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCCcCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 344445555778887754445678999999 8999999988888764
No 136
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=38.63 E-value=64 Score=19.40 Aligned_cols=50 Identities=10% Similarity=0.169 Sum_probs=37.1
Q ss_pred CCCCCCHHHHHHHHHHHhh-CCCCCChHHHHHHHhCCCCCHHHHHHHHHHHH
Q 032677 20 HSTHWNRSEDKLFEHALVM-FPEESPDRWQKIASQLPGKSAVEVREHYEALV 70 (136)
Q Consensus 20 ~~~~WT~eEdk~le~al~~-~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~l~ 70 (136)
....+|.++...|+.++.. .+--+...=+.||..+ |-|..+|.-=|.+-.
T Consensus 4 ~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l-~l~~~qV~~WFqNRR 54 (72)
T 1uhs_A 4 GAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEA-GLTEEQTQKWFKQRL 54 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHH-TCCHHHHHHHHHHHH
T ss_pred CCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHH-CcCHHHhhHHhHHHH
Confidence 3467999999999999975 4432344457899998 899999876565543
No 137
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=38.23 E-value=72 Score=19.92 Aligned_cols=49 Identities=8% Similarity=0.085 Sum_probs=38.1
Q ss_pred CCCCCCHHHHHHHHHHHhhC---CCCCChHHHHHHHhCCCCCHHHHHHHHHHH
Q 032677 20 HSTHWNRSEDKLFEHALVMF---PEESPDRWQKIASQLPGKSAVEVREHYEAL 69 (136)
Q Consensus 20 ~~~~WT~eEdk~le~al~~~---~~~~~~rW~~IA~~vpgrt~~qv~~ry~~l 69 (136)
.....|.+....|+..+..| |--+...=+.||..+ |-|..||..=|.+-
T Consensus 10 ~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~-gLs~~qV~~WFqNr 61 (83)
T 2dmn_A 10 RKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKT-NLSLLQISNWFINA 61 (83)
T ss_dssp CCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHH-CCCHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHH-CcCHHHhhHHhhhh
Confidence 45679999999999998765 433455668899998 89999998766654
No 138
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=37.02 E-value=69 Score=19.36 Aligned_cols=50 Identities=12% Similarity=0.116 Sum_probs=38.9
Q ss_pred CCCCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhCCCCCHHHHHHHHHHHH
Q 032677 20 HSTHWNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEALV 70 (136)
Q Consensus 20 ~~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~l~ 70 (136)
....+|.++...||.++...+--+...=+.||..+ |-|..+|.-=|.+-.
T Consensus 10 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l-~l~~~qV~vWFqNRR 59 (73)
T 2l7z_A 10 KRVPYTKVQLKELEREYATNKFITKDKRRRISATT-NLSERQVTIWFQNRR 59 (73)
T ss_dssp CCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHH-TSCSHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHH-CCCHHHHHHHHHHHh
Confidence 45679999999999999886654455568899998 899999876666654
No 139
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.62 E-value=72 Score=19.43 Aligned_cols=50 Identities=8% Similarity=0.108 Sum_probs=38.6
Q ss_pred CCCCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhCCCCCHHHHHHHHHHHH
Q 032677 20 HSTHWNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEALV 70 (136)
Q Consensus 20 ~~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~l~ 70 (136)
.....|.++...|+.++...+--+...=+.||..+ |-|..+|.-=|.+-.
T Consensus 10 kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l-~l~~~qV~~WFqNRR 59 (75)
T 2da5_A 10 KYKERAPEQLRALESSFAQNPLPLDEELDRLRSET-KMTRREIDSWFSERR 59 (75)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-CCCHHHHHHHHHHHT
T ss_pred CCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHh-CCCHHHhhHhhHHHH
Confidence 44668999999999999886643444457799998 899999987666654
No 140
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=35.90 E-value=70 Score=19.06 Aligned_cols=49 Identities=12% Similarity=0.130 Sum_probs=37.6
Q ss_pred CCCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhCCCCCHHHHHHHHHHHH
Q 032677 21 STHWNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEALV 70 (136)
Q Consensus 21 ~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~l~ 70 (136)
...+|.++...|+.++...+--+...=+.||..+ |-|..+|.-=|.+-.
T Consensus 6 Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~vWFqNRR 54 (68)
T 1ahd_P 6 RQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHAL-SLTERQIKIWFQNRR 54 (68)
T ss_dssp TCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHH-TCCHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHH-CcCHhhhhHHhHHHH
Confidence 4579999999999998875543445567899998 899999876555543
No 141
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=35.61 E-value=53 Score=19.90 Aligned_cols=40 Identities=20% Similarity=0.202 Sum_probs=30.6
Q ss_pred HHHHHHHhhCCCCCChHHHHHHHhCCCCCHHHHHHHHHHH
Q 032677 30 KLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEAL 69 (136)
Q Consensus 30 k~le~al~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~l 69 (136)
++|+..+..++....-.|+.||..-.|-|..++..-...-
T Consensus 10 ~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA 49 (78)
T 3kw6_A 10 DILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEA 49 (78)
T ss_dssp HHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 4677778887754445799999999999999987655443
No 142
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=34.02 E-value=92 Score=19.89 Aligned_cols=48 Identities=17% Similarity=0.160 Sum_probs=37.2
Q ss_pred CCCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhCCCCCHHHHHHHHHHH
Q 032677 21 STHWNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEAL 69 (136)
Q Consensus 21 ~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~l 69 (136)
...+|.++...|+.++...+--+...=+.||..+ |-|..+|.-=|.+-
T Consensus 38 Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l-~l~~~qV~vWFqNR 85 (97)
T 1b72_A 38 RTNFTTRQLTELEKEFHFNKYLSRARRVEIAATL-ELNETQVKIWFQNR 85 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHH-TCCHHHHHHHHHHH
T ss_pred CcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHh-CCCHHHhHHHHHHH
Confidence 4679999999999999876543444557899998 89999987655554
No 143
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=33.89 E-value=72 Score=20.86 Aligned_cols=32 Identities=25% Similarity=0.565 Sum_probs=23.3
Q ss_pred hHHHHHHHhCCCCC----HHHHHHHHHHHHHhHhhh
Q 032677 45 DRWQKIASQLPGKS----AVEVREHYEALVHDVYEI 76 (136)
Q Consensus 45 ~rW~~IA~~vpgrt----~~qv~~ry~~l~~dv~~i 76 (136)
..|..||..|.--+ ...++.+|...+......
T Consensus 66 ~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~yE~~ 101 (107)
T 2lm1_A 66 RKWAKVANRMQYPSSKSVGATLKAHYERILHPFEVY 101 (107)
T ss_dssp TTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHHHHH
Confidence 46999999994322 478999999987655443
No 144
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=33.78 E-value=1.1e+02 Score=21.41 Aligned_cols=50 Identities=12% Similarity=0.082 Sum_probs=40.5
Q ss_pred CCCCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhCCCCCHHHHHHHHHHHH
Q 032677 20 HSTHWNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEALV 70 (136)
Q Consensus 20 ~~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~l~ 70 (136)
....+|.++...|+..+...+--+...=+.||..+ |-|..+|.-=|.+-.
T Consensus 100 ~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l-~L~~~qV~~WFqNrR 149 (164)
T 2d5v_A 100 PRLVFTDVQRRTLHAIFKENKRPSKELQITISQQL-GLELSTVSNFFMNAR 149 (164)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-TCCHHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-CcCHHHhhhcChhhh
Confidence 45679999999999999887654556668899998 899999987776654
No 145
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=33.41 E-value=87 Score=19.42 Aligned_cols=48 Identities=13% Similarity=0.282 Sum_probs=36.0
Q ss_pred CCCCCHHHHHHHHHHH---hhCCCCCChHHHHHHHhCCCCCHHHHHHHHHHH
Q 032677 21 STHWNRSEDKLFEHAL---VMFPEESPDRWQKIASQLPGKSAVEVREHYEAL 69 (136)
Q Consensus 21 ~~~WT~eEdk~le~al---~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~l 69 (136)
...+|.+....|+..+ ...+--+...=+.||..+ |-|..||..=|.+-
T Consensus 5 R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~-~l~~~qV~~WFqNr 55 (87)
T 1b72_B 5 RRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKC-GITVSQVSNWFGNK 55 (87)
T ss_dssp CCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHH-TSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHH-CcCHHHHHHHHHHH
Confidence 4578999999999999 444433345567899998 89999987655554
No 146
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=32.99 E-value=79 Score=18.77 Aligned_cols=49 Identities=10% Similarity=0.087 Sum_probs=37.7
Q ss_pred CCCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhCCCCCHHHHHHHHHHHH
Q 032677 21 STHWNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEALV 70 (136)
Q Consensus 21 ~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~l~ 70 (136)
...+|.++...|+..+...+--+...=..||..+ |-|..+|.-=|.+-.
T Consensus 6 Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l-~l~~~qV~~WFqNRR 54 (68)
T 1ftt_A 6 RVLFSQAQVYELERRFKQQKYLSAPEREHLASMI-HLTPTQVKIWFQNHR 54 (68)
T ss_dssp CSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHH-TSCHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHh-CCCHHHhHHHhHHHh
Confidence 4569999999999998876543444557899998 899999876665543
No 147
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=32.05 E-value=96 Score=19.50 Aligned_cols=47 Identities=13% Similarity=0.050 Sum_probs=33.3
Q ss_pred CCCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhCCCCCHHHHHHHHHHHHHhHh
Q 032677 21 STHWNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEALVHDVY 74 (136)
Q Consensus 21 ~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~l~~dv~ 74 (136)
-...|..|.+.|.-.+.-+ .-..||+.+ |.|..-|+.|...+..-++
T Consensus 25 l~~Lt~~e~~vl~l~~~g~------s~~eIA~~l-~is~~tV~~~l~r~~~kL~ 71 (95)
T 3c57_A 25 LSGLTDQERTLLGLLSEGL------TNKQIADRM-FLAEKTVKNYVSRLLAKLG 71 (95)
T ss_dssp --CCCHHHHHHHHHHHTTC------CHHHHHHHH-TCCHHHHHHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHHcCC------CHHHHHHHH-CcCHHHHHHHHHHHHHHHc
Confidence 3568888888887753222 358999999 8899999888887765443
No 148
>2dk8_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, RNA_POL_RPC34 domain, RNA polymerase III C39 subunit, NPPSFA; NMR {Mus musculus} SCOP: a.4.5.85
Probab=31.92 E-value=1e+02 Score=19.79 Aligned_cols=39 Identities=21% Similarity=0.215 Sum_probs=32.2
Q ss_pred HHHHHHhhCCCCCChHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 032677 31 LFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEALVH 71 (136)
Q Consensus 31 ~le~al~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~l~~ 71 (136)
.+...+..||.|..+ +.|...||+-++.+...--..|+.
T Consensus 18 ~IL~l~~~~P~GItd--~~L~~~~p~~~~~~r~~aIN~LL~ 56 (81)
T 2dk8_A 18 RIIELCHQFPHGITD--QVIQNEMPHIEAQQRAVAINRLLS 56 (81)
T ss_dssp HHHHHHHHCSSCEEH--HHHHHHCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCH--HHHHHHCCCCCHHHHHHHHHHHHH
Confidence 355677999988766 779999999999998888888875
No 149
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=31.68 E-value=85 Score=18.76 Aligned_cols=49 Identities=14% Similarity=0.234 Sum_probs=34.5
Q ss_pred CCCCCHHHHHHHHHHHh---hCCCCCChHHHHHHHhCCCCCHHHHHHHHHHHH
Q 032677 21 STHWNRSEDKLFEHALV---MFPEESPDRWQKIASQLPGKSAVEVREHYEALV 70 (136)
Q Consensus 21 ~~~WT~eEdk~le~al~---~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~l~ 70 (136)
.+..|.+....|+..+. ..|--+...=+.||..+ |-|..||..=|.+-.
T Consensus 2 ~g~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~-~l~~~qV~~WFqNrR 53 (67)
T 3k2a_A 2 SGIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDT-GLTILQVNNWFINAR 53 (67)
T ss_dssp ----CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHH-TCCHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHh-CcCHHHhhhhhHHHH
Confidence 35689999999999999 44433345567899988 899999986666553
No 150
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=31.63 E-value=86 Score=18.79 Aligned_cols=49 Identities=12% Similarity=0.263 Sum_probs=36.9
Q ss_pred CCCCCHHHHHHHHHHH---hhCCCCCChHHHHHHHhCCCCCHHHHHHHHHHHH
Q 032677 21 STHWNRSEDKLFEHAL---VMFPEESPDRWQKIASQLPGKSAVEVREHYEALV 70 (136)
Q Consensus 21 ~~~WT~eEdk~le~al---~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~l~ 70 (136)
....|.++...|+..+ ...|--+...=..||..+ |-|..||..=|.+-.
T Consensus 5 R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~-~L~~~qV~~WFqNrR 56 (73)
T 1puf_B 5 RRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKC-GITVSQVSNWFGNKR 56 (73)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHH-TSCHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHH-CcCHHHHHHHHHHHH
Confidence 4578999999999999 444433345567899998 899999987666543
No 151
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=30.94 E-value=28 Score=22.51 Aligned_cols=30 Identities=27% Similarity=0.514 Sum_probs=21.4
Q ss_pred hHHHHHHHhCCC---CC-HHHHHHHHHHHHHhHh
Q 032677 45 DRWQKIASQLPG---KS-AVEVREHYEALVHDVY 74 (136)
Q Consensus 45 ~rW~~IA~~vpg---rt-~~qv~~ry~~l~~dv~ 74 (136)
..|..||..|.- .+ ...++.+|...+....
T Consensus 58 ~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~yE 91 (96)
T 2jxj_A 58 KKWSKVGSRLGYLPGKGTGSLLKSHYERILYPYE 91 (96)
T ss_dssp TTHHHHHHHHTCCSCSCHHHHHHHHHTTTTHHHH
T ss_pred CcHHHHHHHhCCCCcCcHHHHHHHHHHHHHHHHH
Confidence 469999999842 23 4688888988765443
No 152
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.88 E-value=1e+02 Score=19.48 Aligned_cols=50 Identities=8% Similarity=0.095 Sum_probs=38.2
Q ss_pred CCCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 032677 21 STHWNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEALVH 71 (136)
Q Consensus 21 ~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~l~~ 71 (136)
....|.++...|+.++...+--+...=+.||..+ |-|..+|.-=|.+-..
T Consensus 17 ~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~-~l~~~qV~vWFqNRR~ 66 (89)
T 2dmp_A 17 FKEKTQGQVKILEDSFLKSSFPTQAELDRLRVET-KLSRREIDSWFSERRK 66 (89)
T ss_dssp CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-TCCHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHh-CCCHHhccHhhHhHHH
Confidence 3458999999999999886543444557899998 8999998766666543
No 153
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=30.62 E-value=67 Score=19.60 Aligned_cols=39 Identities=5% Similarity=0.029 Sum_probs=30.0
Q ss_pred HHHHHHHhhCCCCCChHHHHHHHhCCCCCHHHHHHHHHH
Q 032677 30 KLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEA 68 (136)
Q Consensus 30 k~le~al~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~ 68 (136)
++|+..+..++....-.|+.||+.-.|-|..++..-...
T Consensus 8 ~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~e 46 (83)
T 3aji_B 8 LIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQE 46 (83)
T ss_dssp HHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHH
Confidence 466777777775444569999999999999998865544
No 154
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=30.47 E-value=40 Score=24.87 Aligned_cols=17 Identities=12% Similarity=0.374 Sum_probs=13.7
Q ss_pred CCCCCCCCCHHHHHHHH
Q 032677 17 AMTHSTHWNRSEDKLFE 33 (136)
Q Consensus 17 ~~~~~~~WT~eEdk~le 33 (136)
...-.+.||.++|++|+
T Consensus 110 P~N~pGIWT~eDDe~L~ 126 (168)
T 3cz6_A 110 PPNVPGIWTHDDDESLK 126 (168)
T ss_dssp CTTCTTCCCHHHHHHHH
T ss_pred CCCCCCCCChhhHHHHH
Confidence 34457889999999986
No 155
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=29.05 E-value=96 Score=18.55 Aligned_cols=50 Identities=14% Similarity=0.190 Sum_probs=37.0
Q ss_pred CCCCCCCHHHHHHHHHHHhh---CCCCCChHHHHHHHhCCCCCHHHHHHHHHHH
Q 032677 19 THSTHWNRSEDKLFEHALVM---FPEESPDRWQKIASQLPGKSAVEVREHYEAL 69 (136)
Q Consensus 19 ~~~~~WT~eEdk~le~al~~---~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~l 69 (136)
.....+|.+....|+..+.. .|--+...=+.||..+ |-|..||..=|.+-
T Consensus 9 r~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~-~L~~~qV~~WFqNr 61 (73)
T 1x2n_A 9 NKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQT-NLTLLQVNNWFINA 61 (73)
T ss_dssp CSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHH-TCCHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH-CcCHHHHHHHhHHH
Confidence 34567999999999999965 2322345567899998 89999987666554
No 156
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=28.78 E-value=1.1e+02 Score=18.97 Aligned_cols=44 Identities=5% Similarity=0.085 Sum_probs=34.0
Q ss_pred CCHHHHHHHHHHHhhCCCCCChHHHHHHHhCCCCCHHHHHHHHHH
Q 032677 24 WNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEA 68 (136)
Q Consensus 24 WT~eEdk~le~al~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~ 68 (136)
=|.++...|+..+..-+--++..=+.||..+ |-|..||..=|.+
T Consensus 11 ~~~~Ql~~LE~~F~~~~YPs~~er~eLA~~t-gLt~~qVkvWFqN 54 (66)
T 3nau_A 11 KTKEQIAHLKASFLQSQFPDDAEVYRLIEVT-GLARSEIKKWFSD 54 (66)
T ss_dssp CCHHHHHHHHHHHHGGGSCCHHHHHHHHHHH-CCCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHh-CcCHHHhhHhccc
Confidence 4789999999998774433456779999999 8999999655544
No 157
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=28.30 E-value=1.1e+02 Score=18.84 Aligned_cols=49 Identities=12% Similarity=0.098 Sum_probs=37.5
Q ss_pred CCCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhCCCCCHHHHHHHHHHHH
Q 032677 21 STHWNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEALV 70 (136)
Q Consensus 21 ~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~l~ 70 (136)
...+|.++...|+.++...+--+...=+.||..+ |-+..+|.-=|.+-.
T Consensus 26 Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~vWFqNRR 74 (84)
T 2kt0_A 26 RTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNIL-NLSYKQVKTWFQNQR 74 (84)
T ss_dssp SSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHT-TCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHH
Confidence 4579999999999999876543344457899998 899999876665543
No 158
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=27.83 E-value=1.2e+02 Score=21.37 Aligned_cols=43 Identities=12% Similarity=0.092 Sum_probs=32.5
Q ss_pred CCHHHHHHHHHHHhhCCCCCChHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 032677 24 WNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEALVH 71 (136)
Q Consensus 24 WT~eEdk~le~al~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~l~~ 71 (136)
-+.-+. .+..+|...+. -.+..||+.+ |-|..-|.+|.+.|.+
T Consensus 25 ld~~d~-~IL~~L~~~~~---~s~~eLA~~l-glS~~tv~~rl~~L~~ 67 (171)
T 2e1c_A 25 LDEIDK-KIIKILQNDGK---APLREISKIT-GLAESTIHERIRKLRE 67 (171)
T ss_dssp CCHHHH-HHHHHHHHCTT---CCHHHHHHHH-TSCHHHHHHHHHHHHH
T ss_pred CCHHHH-HHHHHHHHcCC---CCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 444444 44467776543 4689999999 8999999999999985
No 159
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=27.69 E-value=1.5e+02 Score=20.45 Aligned_cols=49 Identities=14% Similarity=0.119 Sum_probs=38.2
Q ss_pred CCCCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhCCCCCHHHHHHHHHHH
Q 032677 20 HSTHWNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEAL 69 (136)
Q Consensus 20 ~~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~l 69 (136)
....+|.++...|+.++...+.-+...=..||..+ |-+..+|.-=|.+-
T Consensus 90 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l-~L~~~qV~vWFqNR 138 (146)
T 1au7_A 90 RRTTISIAAKDALERHFGEHSKPSSQEIMRMAEEL-NLEKEVVRVWFCNR 138 (146)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-TCCHHHHHHHHHHH
T ss_pred CCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHh-CCChhhchhhhHhh
Confidence 34579999999999999886654455668899998 89999887655543
No 160
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=27.60 E-value=1.2e+02 Score=19.28 Aligned_cols=49 Identities=14% Similarity=0.223 Sum_probs=36.8
Q ss_pred CCCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhCCCCCHHHHHHHHHHHH
Q 032677 21 STHWNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEALV 70 (136)
Q Consensus 21 ~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~l~ 70 (136)
....|.++...|+..+...+--+...=+.||..+ |-+..+|.-=|.+-.
T Consensus 29 Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l-~L~~~qV~vWFqNRR 77 (96)
T 3nar_A 29 ICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKES-GLARTDIVSWFGDTR 77 (96)
T ss_dssp SSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-CCCHHHHHHHHHHHH
T ss_pred CccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHh-CCCHHHeeecchhhh
Confidence 3579999999999998875533334456789998 899999876666543
No 161
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=27.39 E-value=1.1e+02 Score=18.80 Aligned_cols=49 Identities=10% Similarity=0.108 Sum_probs=36.9
Q ss_pred CCCCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhCCCCCHHHHHHHHHHH
Q 032677 20 HSTHWNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEAL 69 (136)
Q Consensus 20 ~~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~l 69 (136)
....+|.++...|+.++...+--+...=+.||..+ |-|..+|.-=|.+-
T Consensus 23 ~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l-~l~~~qV~vWFqNR 71 (81)
T 1b8i_A 23 GRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHAL-SLTERQIKIWFQNR 71 (81)
T ss_dssp -CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-TCCHHHHHHHHHHH
T ss_pred CCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHh-CCCHHHHHHHhHHh
Confidence 44679999999999998886543344457899998 89999887655553
No 162
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.07 E-value=1.2e+02 Score=19.10 Aligned_cols=45 Identities=20% Similarity=0.204 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhhCCCCCChHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 032677 26 RSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEALVH 71 (136)
Q Consensus 26 ~eEdk~le~al~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~l~~ 71 (136)
.+...+|+.++++-+.-+...-.+||..+ |-+.+-|+.=|.+...
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~l-gL~~~VVrVWFqNrRa 58 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAV-GLPQEFVKEWFEQRKV 58 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHH-TCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHh-CCCHHHHHHHHhhccc
Confidence 46688999999998877778899999999 8888877777777653
No 163
>1hbk_A ACBP, acyl-COA binding protein; fatty acid metabolism; HET: COA MYR; 2.0A {Plasmodium falciparum} SCOP: a.11.1.1
Probab=27.01 E-value=61 Score=20.91 Aligned_cols=21 Identities=10% Similarity=0.423 Sum_probs=18.0
Q ss_pred CCCCCHHHHHHHHHHHHHhHh
Q 032677 54 LPGKSAVEVREHYEALVHDVY 74 (136)
Q Consensus 54 vpgrt~~qv~~ry~~l~~dv~ 74 (136)
+.|.|.++.+++|..+++.+.
T Consensus 64 l~gms~eeA~~~YI~~v~~l~ 84 (89)
T 1hbk_A 64 VENLNREDAQKRYVDIVSEIF 84 (89)
T ss_dssp TTTCCHHHHHHHHHHHHHHHC
T ss_pred hcCCCHHHHHHHHHHHHHHHc
Confidence 379999999999999997553
No 164
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=26.33 E-value=1.3e+02 Score=19.06 Aligned_cols=52 Identities=6% Similarity=-0.014 Sum_probs=39.6
Q ss_pred CCCCCCCCHHHHHHHHHHHhh-CCCCCChHHHHHHHhCCCCCHHHHHHHHHHHH
Q 032677 18 MTHSTHWNRSEDKLFEHALVM-FPEESPDRWQKIASQLPGKSAVEVREHYEALV 70 (136)
Q Consensus 18 ~~~~~~WT~eEdk~le~al~~-~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~l~ 70 (136)
.+.....|.++..+|+.+++. -+.-+...=+.||+.+ |-+...|+-=|.+-.
T Consensus 8 kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~t-GL~~~~IqVWFQNrR 60 (71)
T 1wi3_A 8 PRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQL-DLPKHTIIKFFQNQR 60 (71)
T ss_dssp CCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHS-CCCHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHh-CCCHHHHHHhhccce
Confidence 345567999999999999998 2222245679999999 888888877676654
No 165
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=26.30 E-value=1.1e+02 Score=18.50 Aligned_cols=48 Identities=13% Similarity=0.193 Sum_probs=36.6
Q ss_pred CCCCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhCCCCCHHHHHHHHHH
Q 032677 20 HSTHWNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEA 68 (136)
Q Consensus 20 ~~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~ 68 (136)
....+|.++...||.++...+--+...=+.||..+ |-|..+|.-=|.+
T Consensus 16 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l-~l~~~qV~vWFqN 63 (77)
T 1puf_A 16 KRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLL-NLTERQVKIWFQN 63 (77)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-TCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHH-CcCHHHHHHHHHH
Confidence 44679999999999999886543444557899998 8999998755544
No 166
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=25.93 E-value=33 Score=23.15 Aligned_cols=27 Identities=15% Similarity=0.331 Sum_probs=21.8
Q ss_pred hHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 032677 45 DRWQKIASQLPGKSAVEVREHYEALVH 71 (136)
Q Consensus 45 ~rW~~IA~~vpgrt~~qv~~ry~~l~~ 71 (136)
..|..||..|.--+...++.+|...+.
T Consensus 71 ~~W~~Va~~lg~~~~~~Lr~~Y~k~L~ 97 (116)
T 2li6_A 71 QQWSMVAQRLQISDYQQLESIYFRILL 97 (116)
T ss_dssp TCHHHHHHHHTSCCTTHHHHHHHHHHS
T ss_pred CcHHHHHHHhCCChHHHHHHHHHHHHH
Confidence 469999999954557889999998764
No 167
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=25.62 E-value=1.7e+02 Score=20.41 Aligned_cols=48 Identities=15% Similarity=0.133 Sum_probs=37.6
Q ss_pred CCCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhCCCCCHHHHHHHHHHH
Q 032677 21 STHWNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEAL 69 (136)
Q Consensus 21 ~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~l 69 (136)
...+|.++...|+.++...+.-+...=+.||..+ |-+..+|.-=|.+-
T Consensus 105 Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l-~L~~~qV~vWFqNR 152 (160)
T 1e3o_C 105 RTSIETNIRVALEKSFMENQKPTSEDITLIAEQL-NMEKEVIRVWFSNR 152 (160)
T ss_dssp CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-TCCHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHH-CCChHHhhHhhHHh
Confidence 3579999999999999886654455567899998 89999887655553
No 168
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=24.92 E-value=41 Score=23.73 Aligned_cols=42 Identities=24% Similarity=0.286 Sum_probs=21.4
Q ss_pred CHHHHHHHHHHHhhCCCCCC----hHHHHHHHhCCCCCHHHHHHHH
Q 032677 25 NRSEDKLFEHALVMFPEESP----DRWQKIASQLPGKSAVEVREHY 66 (136)
Q Consensus 25 T~eEdk~le~al~~~~~~~~----~rW~~IA~~vpgrt~~qv~~ry 66 (136)
.-+...+|+-++|..--+.. --=..||..+-|||+++|++.+
T Consensus 92 ~vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ikgkt~eeir~~f 137 (160)
T 2p1m_A 92 KIDQATLFELILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRTTF 137 (160)
T ss_dssp ---------CHHHHHHTTCHHHHHHHHHHHHHTTTTCCHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHc
Confidence 44555666666555222211 1136899999999999999754
No 169
>2cb8_A Acyl-COA-binding protein; acyl-coenzyme A binding protein, fatty acid, acetylation, alternative splicing, lipid-binding, transport; HET: MYA; 1.4A {Homo sapiens} PDB: 2fj9_A 1aca_A* 1hb6_A 1hb8_A 1nti_A 1nvl_A* 2abd_A 2fdq_A
Probab=24.24 E-value=79 Score=20.32 Aligned_cols=21 Identities=24% Similarity=0.325 Sum_probs=18.3
Q ss_pred CCCCCHHHHHHHHHHHHHhHh
Q 032677 54 LPGKSAVEVREHYEALVHDVY 74 (136)
Q Consensus 54 vpgrt~~qv~~ry~~l~~dv~ 74 (136)
+.|.|.++.+.+|..+++.+.
T Consensus 62 l~gms~eeA~~~Yi~~v~~l~ 82 (87)
T 2cb8_A 62 LKGTSKEDAMKAYINKVEELK 82 (87)
T ss_dssp TTTCCHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHH
Confidence 379999999999999998664
No 170
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=23.97 E-value=1.3e+02 Score=20.29 Aligned_cols=41 Identities=20% Similarity=0.436 Sum_probs=28.1
Q ss_pred hHHHHHHHhCCCCC----HHHHHHHHHHHHHhHhh-hccCCccCCC
Q 032677 45 DRWQKIASQLPGKS----AVEVREHYEALVHDVYE-IDSGRVELPS 85 (136)
Q Consensus 45 ~rW~~IA~~vpgrt----~~qv~~ry~~l~~dv~~-ie~g~v~~p~ 85 (136)
..|..||..|.--+ ...++.+|...+..... ++.|..+-|.
T Consensus 73 ~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~yE~~~~~g~~~p~~ 118 (125)
T 2cxy_A 73 KKWRELATNLNVGTSSSAASSLKKQYIQYLFAFECKIERGEEPPPE 118 (125)
T ss_dssp TCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHHHHHHHHHCCCCCCS
T ss_pred CcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHcCCCCChh
Confidence 36999999994322 46889999998765544 3677655443
No 171
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=23.81 E-value=1.7e+02 Score=19.57 Aligned_cols=42 Identities=14% Similarity=0.227 Sum_probs=31.7
Q ss_pred CHHHHHHHHHHHhhCCCCCChHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 032677 25 NRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEALVH 71 (136)
Q Consensus 25 T~eEdk~le~al~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~l~~ 71 (136)
+.-+.++| .+|...+. -.+..||+.+ |-|..-|.+|.+.|.+
T Consensus 8 d~~d~~il-~~L~~~~~---~s~~ela~~l-g~s~~tv~~~l~~L~~ 49 (151)
T 2dbb_A 8 DRVDMQLV-KILSENSR---LTYRELADIL-NTTRQRIARRIDKLKK 49 (151)
T ss_dssp CHHHHHHH-HHHHHCTT---CCHHHHHHHT-TSCHHHHHHHHHHHHH
T ss_pred CHHHHHHH-HHHHHcCC---CCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 34444444 67776543 4689999999 8999999999999975
No 172
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=23.70 E-value=35 Score=23.61 Aligned_cols=20 Identities=25% Similarity=0.620 Sum_probs=17.1
Q ss_pred HHHHHhCCCCCHHHHHHHHH
Q 032677 48 QKIASQLPGKSAVEVREHYE 67 (136)
Q Consensus 48 ~~IA~~vpgrt~~qv~~ry~ 67 (136)
..||..+-|||++|+|+.+.
T Consensus 115 ~~vA~~ikgkt~eeiR~~f~ 134 (141)
T 1fs1_B 115 KTVANMIKGKTPEEIRKTFN 134 (141)
T ss_dssp HHHHHHHTTCCHHHHHHHTC
T ss_pred HHHHHHHcCCCHHHHHHHcC
Confidence 68899999999999987653
No 173
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=23.59 E-value=1.1e+02 Score=17.17 Aligned_cols=47 Identities=13% Similarity=0.129 Sum_probs=34.6
Q ss_pred CCCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhCCCCCHHHHHHHHHH
Q 032677 21 STHWNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEA 68 (136)
Q Consensus 21 ~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~ 68 (136)
....|.++...|+..+...+--+...=..||..+ |-+..+|.-=|.+
T Consensus 6 Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~~WFqN 52 (58)
T 3rkq_A 6 RVLFSQAQVYELERRFKQQRYLSAPERDQLASVL-KLTSTQVKIWFQN 52 (58)
T ss_dssp CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHH-TCCHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHh-CcCHHHHHHhhHH
Confidence 4568999999999998775432334446788888 8899888755544
No 174
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=23.19 E-value=1.7e+02 Score=20.73 Aligned_cols=49 Identities=16% Similarity=0.115 Sum_probs=37.3
Q ss_pred CCCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhCCCCCHHHHHHHHHHHH
Q 032677 21 STHWNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEALV 70 (136)
Q Consensus 21 ~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~l~ 70 (136)
...+|.++...|+..+...+.-+...=+.||..+ |-+..+|.-=|.+-.
T Consensus 103 Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l-~L~~~qV~vWFqNRR 151 (164)
T 2xsd_C 103 RTSIEVGVKGALESHFLKCPKPSAHEITGLADSL-QLEKEVVRVWFCNRR 151 (164)
T ss_dssp ---CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-TCCHHHHHHHHHHHH
T ss_pred ceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-CCChhhhhhhhHHhh
Confidence 3579999999999999886654455568899998 899999887666654
No 175
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=23.17 E-value=1.9e+02 Score=19.94 Aligned_cols=49 Identities=12% Similarity=0.111 Sum_probs=38.2
Q ss_pred CCCCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhCCCCCHHHHHHHHHHH
Q 032677 20 HSTHWNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEAL 69 (136)
Q Consensus 20 ~~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~l 69 (136)
....+|.++...|+..+...+.-+...=..||..+ |-+..+|.-=|.+-
T Consensus 96 ~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l-~L~~~qV~vWFqNr 144 (151)
T 3d1n_I 96 RRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKEL-NYDREVVRVWFSNR 144 (151)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-TSCHHHHHHHHHHH
T ss_pred CCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-CCCHHHhHHHHHHH
Confidence 34569999999999999886654455668899998 89999987655543
No 176
>1st7_A ACBP, acyl-COA-binding protein; four helix bundle, transport protein; NMR {Saccharomyces cerevisiae}
Probab=22.58 E-value=64 Score=20.67 Aligned_cols=27 Identities=33% Similarity=0.618 Sum_probs=20.7
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHhHh
Q 032677 47 WQKIASQLPGKSAVEVREHYEALVHDVY 74 (136)
Q Consensus 47 W~~IA~~vpgrt~~qv~~ry~~l~~dv~ 74 (136)
|+.-.+ +.|.|.++.+++|..+++.+.
T Consensus 55 w~AW~~-l~gms~eeA~~~YI~~v~~l~ 81 (86)
T 1st7_A 55 WEAWEN-LKGKSQEDAEKEYIALVDQLI 81 (86)
T ss_dssp HHHHHT-TTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-cCCCCHHHHHHHHHHHHHHHh
Confidence 444333 479999999999999998664
No 177
>3epy_A Acyl-COA-binding domain-containing protein 7; acyl-COA binding protein, fatty acid, lipid metabolism, structural genomics; HET: COA PLM; 2.00A {Homo sapiens} SCOP: a.11.1.1
Probab=22.47 E-value=89 Score=20.20 Aligned_cols=21 Identities=14% Similarity=0.213 Sum_probs=18.4
Q ss_pred CCCCCHHHHHHHHHHHHHhHh
Q 032677 54 LPGKSAVEVREHYEALVHDVY 74 (136)
Q Consensus 54 vpgrt~~qv~~ry~~l~~dv~ 74 (136)
+.|.|.++.+++|..+++.+.
T Consensus 64 l~g~s~eeA~~~Yi~~v~~l~ 84 (89)
T 3epy_A 64 KKGLSTEDATSAYISKAKELI 84 (89)
T ss_dssp TTTCCHHHHHHHHHHHHHHHH
T ss_pred hhCCCHHHHHHHHHHHHHHHh
Confidence 579999999999999997654
No 178
>2lbb_A Acyl COA binding protein; protein binding, structural genomi seattle structural genomics center for infectious disease,; NMR {Babesia bovis}
Probab=22.31 E-value=83 Score=20.79 Aligned_cols=27 Identities=26% Similarity=0.505 Sum_probs=20.4
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHhHh
Q 032677 47 WQKIASQLPGKSAVEVREHYEALVHDVY 74 (136)
Q Consensus 47 W~~IA~~vpgrt~~qv~~ry~~l~~dv~ 74 (136)
|+.-.+ +.|.|.++.+++|..+++.+.
T Consensus 65 w~AW~~-l~gmS~eeAm~~YI~lv~~l~ 91 (96)
T 2lbb_A 65 WEAWNA-LRGMSTESAKEAYVKLLDTLA 91 (96)
T ss_dssp HHHHHH-TTTCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHH-hcCCCHHHHHHHHHHHHHHHh
Confidence 443333 369999999999999997654
No 179
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=22.15 E-value=65 Score=20.30 Aligned_cols=39 Identities=21% Similarity=0.217 Sum_probs=29.0
Q ss_pred HHHHHHHhhCCCCCChHHHHHHHhCCCCCHHHHHHHHHH
Q 032677 30 KLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEA 68 (136)
Q Consensus 30 k~le~al~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~ 68 (136)
++|+..+.+++-...-.|+.||+.-+|-|..|+..-..+
T Consensus 18 ~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~e 56 (86)
T 2krk_A 18 DILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTE 56 (86)
T ss_dssp HHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHH
Confidence 356667777764444569999999999999998765444
No 180
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=21.90 E-value=78 Score=21.26 Aligned_cols=46 Identities=22% Similarity=0.278 Sum_probs=29.1
Q ss_pred HHHHHHhhCCCC----CChHHHHHHHhCCCC---C-HHHHHHHHHHHHHhHhhh
Q 032677 31 LFEHALVMFPEE----SPDRWQKIASQLPGK---S-AVEVREHYEALVHDVYEI 76 (136)
Q Consensus 31 ~le~al~~~~~~----~~~rW~~IA~~vpgr---t-~~qv~~ry~~l~~dv~~i 76 (136)
.|-.++.+.+.- ....|..||..|.-- + ...++.+|...+......
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~yE~~ 97 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYPYEMY 97 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 344555555431 135799999999422 2 568899999987654443
No 181
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=21.81 E-value=1.5e+02 Score=18.28 Aligned_cols=48 Identities=8% Similarity=0.165 Sum_probs=36.9
Q ss_pred CCCCHHHHHHHHHHHhh---CCCCCChHHHHHHHhCCCCCHHHHHHHHHHHH
Q 032677 22 THWNRSEDKLFEHALVM---FPEESPDRWQKIASQLPGKSAVEVREHYEALV 70 (136)
Q Consensus 22 ~~WT~eEdk~le~al~~---~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~l~ 70 (136)
..+|.++...|+..+.. .+--+...=+.||..+ |-|..||.-=|.+-.
T Consensus 7 ~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~-gLt~~qV~~WFqNrR 57 (83)
T 1le8_B 7 HRFTKENVRILESWFAKNIENPYLDTKGLENLMKNT-SLSRIQIKNWVAARR 57 (83)
T ss_dssp CCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHH-CCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHH-CCCHHHcccccHHHH
Confidence 44999999999999988 5543344457889988 899999987666654
No 182
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=21.68 E-value=1.8e+02 Score=19.04 Aligned_cols=37 Identities=27% Similarity=0.317 Sum_probs=29.2
Q ss_pred HHHHHHhhCCCCCChHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 032677 31 LFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEALVH 71 (136)
Q Consensus 31 ~le~al~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~l~~ 71 (136)
.+..+|...+. -.+..||+.+ |-|..-|.++.+.|.+
T Consensus 8 ~il~~L~~~~~---~~~~ela~~l-g~s~~tv~~~l~~L~~ 44 (141)
T 1i1g_A 8 IILEILEKDAR---TPFTEIAKKL-GISETAVRKRVKALEE 44 (141)
T ss_dssp HHHHHHHHCTT---CCHHHHHHHH-TSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC---CCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 33456766543 3699999999 8999999999999975
No 183
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=21.60 E-value=1.9e+02 Score=19.37 Aligned_cols=42 Identities=14% Similarity=0.185 Sum_probs=31.7
Q ss_pred CHHHHHHHHHHHhhCCCCCChHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 032677 25 NRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEALVH 71 (136)
Q Consensus 25 T~eEdk~le~al~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~l~~ 71 (136)
+.-+.++| .+|...+. -.+..||+.+ |-|..-|..|.+.|.+
T Consensus 6 d~~~~~il-~~L~~~~~---~s~~ela~~l-g~s~~tv~~~l~~L~~ 47 (151)
T 2cyy_A 6 DEIDKKII-KILQNDGK---APLREISKIT-GLAESTIHERIRKLRE 47 (151)
T ss_dssp CHHHHHHH-HHHHHCTT---CCHHHHHHHH-CSCHHHHHHHHHHHHH
T ss_pred CHHHHHHH-HHHHHcCC---CCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 34444444 56766543 4689999999 8999999999999975
No 184
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=21.58 E-value=1.3e+02 Score=18.18 Aligned_cols=42 Identities=12% Similarity=0.319 Sum_probs=31.3
Q ss_pred CHHHHHHHHHHHhh---CCCCCChHHHHHHHhCCCCCHHHHHHHHHHH
Q 032677 25 NRSEDKLFEHALVM---FPEESPDRWQKIASQLPGKSAVEVREHYEAL 69 (136)
Q Consensus 25 T~eEdk~le~al~~---~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~l 69 (136)
..++...||+.+.. ||. ..+=..||..+ |-|..||.-=|.+-
T Consensus 8 ~~~~~~~LE~~F~~~~~yp~--~~~r~~LA~~l-~LterQVkvWFqNR 52 (64)
T 1x2m_A 8 TAQPNAILEKVFTAITKHPD--EKRLEGLSKQL-DWDVRSIQRWFRQR 52 (64)
T ss_dssp SSCHHHHHHHHHHTTCSSCC--HHHHHHHHHHH-CSCHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHcCCCcC--HHHHHHHHHHh-CCCHHHHHHHHHHH
Confidence 35678999999943 553 44568899999 89999997655554
No 185
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=21.50 E-value=50 Score=23.66 Aligned_cols=43 Identities=19% Similarity=0.284 Sum_probs=28.9
Q ss_pred CHHHHHHHHHHHhhCCCCCC----hHHHHHHHhCCCCCHHHHHHHHH
Q 032677 25 NRSEDKLFEHALVMFPEESP----DRWQKIASQLPGKSAVEVREHYE 67 (136)
Q Consensus 25 T~eEdk~le~al~~~~~~~~----~rW~~IA~~vpgrt~~qv~~ry~ 67 (136)
.-+...+|+-++|..--+.. --=..||..+-|||++|+|+.|.
T Consensus 100 ~vd~~~LfeLi~AAnyLdIk~Lldl~c~~vA~~ikgktpeeiR~~f~ 146 (169)
T 3v7d_A 100 KVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFN 146 (169)
T ss_dssp CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHcCCCHHHHHHHcC
Confidence 34556777777776433221 12467899999999999997553
No 186
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=21.40 E-value=1.3e+02 Score=18.29 Aligned_cols=44 Identities=14% Similarity=0.135 Sum_probs=33.2
Q ss_pred CCCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 032677 21 STHWNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEALVH 71 (136)
Q Consensus 21 ~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~l~~ 71 (136)
....|..|.+.|.-.+ .+ -.-..||+.+ |.|..-|..|...+..
T Consensus 19 ~~~Lt~~e~~vl~l~~--~g----~s~~eIA~~l-~is~~tV~~~l~r~~~ 62 (82)
T 1je8_A 19 VNQLTPRERDILKLIA--QG----LPNKMIARRL-DITESTVKVHVKHMLK 62 (82)
T ss_dssp GGGSCHHHHHHHHHHT--TT----CCHHHHHHHH-TSCHHHHHHHHHHHHH
T ss_pred HccCCHHHHHHHHHHH--cC----CCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 3568999999887732 12 1358999999 8999999888877765
No 187
>2cop_A Acyl-coenzyme A binding domain containing 6; acyl COA binding protein, COA binding protein, lipid binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.59 E-value=85 Score=21.11 Aligned_cols=27 Identities=22% Similarity=0.415 Sum_probs=20.9
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHhHh
Q 032677 47 WQKIASQLPGKSAVEVREHYEALVHDVY 74 (136)
Q Consensus 47 W~~IA~~vpgrt~~qv~~ry~~l~~dv~ 74 (136)
|+.-.+ +.|.|.++.+++|..+++.+.
T Consensus 62 w~AW~~-l~gms~eeAm~~YI~lv~~l~ 88 (109)
T 2cop_A 62 WEAWKA-LGDSSPSQAMQEYIAVVKKLD 88 (109)
T ss_dssp HHHHHS-CTTCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHH-hcCCCHHHHHHHHHHHHHHHh
Confidence 544443 468999999999999998654
No 188
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=20.45 E-value=1.6e+02 Score=18.16 Aligned_cols=47 Identities=6% Similarity=0.088 Sum_probs=35.6
Q ss_pred CCCCCHHHHHHHHHHHhh----CCCCCChHHHHHHHhCCCCCHHHHHHHHHH
Q 032677 21 STHWNRSEDKLFEHALVM----FPEESPDRWQKIASQLPGKSAVEVREHYEA 68 (136)
Q Consensus 21 ~~~WT~eEdk~le~al~~----~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~ 68 (136)
...+|.++...|+..+.. .+--+...=+.||..+ |-+..+|.-=|.+
T Consensus 21 Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~l-gL~~~~VkvWFqN 71 (80)
T 1wh5_A 21 RTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQET-GVPRQVLKVWLHN 71 (80)
T ss_dssp SCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHS-CCCHHHHHHHHHH
T ss_pred CccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHh-CCCcccccCCccc
Confidence 357999999999999887 3332345568899999 8898888765554
No 189
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=20.43 E-value=1.5e+02 Score=19.70 Aligned_cols=38 Identities=11% Similarity=0.010 Sum_probs=29.6
Q ss_pred HHHHHHHhhCCCCCChHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 032677 30 KLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEALVH 71 (136)
Q Consensus 30 k~le~al~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~l~~ 71 (136)
..+..+|...+ +-.+..||+.+ |-|..-|..|.+.|.+
T Consensus 6 ~~il~~L~~~~---~~~~~ela~~l-g~s~~tv~~~l~~L~~ 43 (150)
T 2pn6_A 6 LRILKILQYNA---KYSLDEIAREI-RIPKATLSYRIKKLEK 43 (150)
T ss_dssp HHHHHHHTTCT---TSCHHHHHHHH-TSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC---CCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 34445666544 34689999999 8999999999999985
No 190
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=20.41 E-value=1.7e+02 Score=18.33 Aligned_cols=44 Identities=16% Similarity=0.110 Sum_probs=33.2
Q ss_pred CCCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 032677 21 STHWNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEALVH 71 (136)
Q Consensus 21 ~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~l~~ 71 (136)
...-|..|...|.-.+.-+ .-..||..+ |-|..-|+.|...+..
T Consensus 27 ~~~Lt~rE~~Vl~l~~~G~------s~~eIA~~L-~iS~~TV~~~~~~i~~ 70 (90)
T 3ulq_B 27 QDVLTPRECLILQEVEKGF------TNQEIADAL-HLSKRSIEYSLTSIFN 70 (90)
T ss_dssp --CCCHHHHHHHHHHHTTC------CHHHHHHHH-TCCHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHcCC------CHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 3457899999887665333 358999999 8999999988888765
No 191
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=20.41 E-value=1.7e+02 Score=18.47 Aligned_cols=50 Identities=12% Similarity=0.099 Sum_probs=38.4
Q ss_pred CCCCCCHHHHHHHHHHHhhCCCCCChHHHHHHHhCCCCCHHHHHHHHHHHH
Q 032677 20 HSTHWNRSEDKLFEHALVMFPEESPDRWQKIASQLPGKSAVEVREHYEALV 70 (136)
Q Consensus 20 ~~~~WT~eEdk~le~al~~~~~~~~~rW~~IA~~vpgrt~~qv~~ry~~l~ 70 (136)
....+|.++...|+..+...+--+...=+.||..+ |-|..+|.-=|.+-.
T Consensus 20 ~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l-~L~~~qV~vWFqNRR 69 (93)
T 3a01_A 20 PRTSFTRIQVAELEKRFHKQKYLASAERAALARGL-KMTDAQVKTWFQNRR 69 (93)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTT-TCCHHHHHHHHHHHH
T ss_pred CCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHh-CCChhhcccccHhhh
Confidence 44679999999999999886653445557889998 899999876565543
No 192
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=20.34 E-value=1.3e+02 Score=21.05 Aligned_cols=36 Identities=19% Similarity=0.264 Sum_probs=26.3
Q ss_pred hHHHHHHHhCCC-C----CHHHHHHHHHHHHHhHhhhccCC
Q 032677 45 DRWQKIASQLPG-K----SAVEVREHYEALVHDVYEIDSGR 80 (136)
Q Consensus 45 ~rW~~IA~~vpg-r----t~~qv~~ry~~l~~dv~~ie~g~ 80 (136)
..|..||..|.- . ....++..|...+........|.
T Consensus 86 ~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~yE~~~~g~ 126 (145)
T 2kk0_A 86 KLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECEKRGL 126 (145)
T ss_dssp TCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHHHHHHTCC
T ss_pred CcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHHHHHHhcC
Confidence 469999999942 1 14689999999876666656664
No 193
>2p64_A F-BOX/WD repeat protein 1A; right handed super-helical bundle, ligase; 2.50A {Homo sapiens}
Probab=20.25 E-value=73 Score=18.98 Aligned_cols=15 Identities=27% Similarity=0.563 Sum_probs=12.7
Q ss_pred CCCHHHHHHHHHHHH
Q 032677 117 PWTEEEHKLFLIGLK 131 (136)
Q Consensus 117 pWTeeEhrlfL~gL~ 131 (136)
.|++.|+.-|+.-|.
T Consensus 18 ~Wse~eQvdfv~~L~ 32 (52)
T 2p64_A 18 QWSESDQVEFVEHLI 32 (52)
T ss_dssp TSCHHHHHHHHHHHH
T ss_pred hccchHHHHHHHHHH
Confidence 599999999988774
Done!