Query 032678
Match_columns 136
No_of_seqs 272 out of 1203
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 06:51:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032678.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032678hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5e_m 60S ribosomal protein L 100.0 3.5E-37 1.2E-41 216.9 0.5 110 1-111 1-110 (128)
2 4fbj_B NEDD8; effector-HOST ta 99.9 2.2E-24 7.4E-29 142.2 9.6 82 1-82 1-82 (88)
3 3phx_B Ubiquitin-like protein 99.9 9.7E-24 3.3E-28 135.8 10.2 75 1-75 5-79 (79)
4 1ndd_A NEDD8, protein (ubiquit 99.9 2.9E-23 9.8E-28 131.7 10.2 76 1-76 1-76 (76)
5 3a9j_A Ubiquitin; protein comp 99.9 7.6E-23 2.6E-27 129.7 10.7 76 1-76 1-76 (76)
6 3n3k_B Ubiquitin; hydrolase, p 99.9 3.3E-23 1.1E-27 134.5 9.0 80 1-80 4-83 (85)
7 1sif_A Ubiquitin; hydrophobic 99.9 4.5E-23 1.5E-27 135.9 9.6 78 1-78 10-87 (88)
8 1wh3_A 59 kDa 2'-5'-oligoadeny 99.9 5.5E-23 1.9E-27 134.3 9.8 79 1-79 8-86 (87)
9 3dbh_I NEDD8; cell cycle, acti 99.9 2.9E-23 1E-27 135.7 8.3 76 1-76 13-88 (88)
10 4hcn_B Polyubiquitin, ubiquiti 99.9 6E-23 2.1E-27 137.7 9.7 76 1-76 23-98 (98)
11 3mtn_B UBA80, ubcep1, ubiquiti 99.9 6.9E-23 2.4E-27 132.8 9.4 80 1-80 4-83 (85)
12 2uyz_B Small ubiquitin-related 99.9 5.4E-23 1.8E-27 132.3 8.2 76 1-76 4-79 (79)
13 3k9o_B Ubiquitin, UBB+1; E2-25 99.9 1.7E-22 6E-27 134.3 10.6 77 1-77 2-78 (96)
14 3plu_A Ubiquitin-like modifier 99.9 1.2E-22 4.2E-27 135.3 9.5 70 1-70 22-91 (93)
15 1wy8_A NP95-like ring finger p 99.9 3.2E-22 1.1E-26 131.3 10.4 78 1-78 8-87 (89)
16 2hj8_A Interferon-induced 17 k 99.9 1.1E-22 3.8E-27 133.9 8.2 77 1-77 5-81 (88)
17 4dwf_A HLA-B-associated transc 99.9 3.5E-22 1.2E-26 131.5 9.7 79 1-80 6-84 (90)
18 1wyw_B Ubiquitin-like protein 99.9 2.1E-22 7.3E-27 135.0 8.4 76 1-76 22-97 (97)
19 3v6c_B Ubiquitin; structural g 99.9 4.3E-22 1.5E-26 131.6 9.1 74 1-74 18-91 (91)
20 3vdz_A Ubiquitin-40S ribosomal 99.9 5.6E-22 1.9E-26 136.1 10.0 76 1-76 36-111 (111)
21 2kan_A Uncharacterized protein 99.9 5.6E-22 1.9E-26 132.4 9.5 76 1-77 16-92 (94)
22 2kk8_A Uncharacterized protein 99.9 4.7E-22 1.6E-26 130.2 8.6 72 1-72 11-83 (84)
23 3l0w_B Monoubiquitinated proli 99.9 1.2E-21 4.3E-26 143.5 11.4 77 1-77 1-77 (169)
24 2l7r_A Ubiquitin-like protein 99.9 5.1E-22 1.7E-26 132.2 8.4 74 1-76 20-93 (93)
25 1yx5_B Ubiquitin; proteasome, 99.9 1.4E-21 4.8E-26 130.7 10.6 77 1-77 1-77 (98)
26 1uel_A HHR23B, UV excision rep 99.9 3.2E-21 1.1E-25 128.6 11.7 77 1-77 1-80 (95)
27 2faz_A Ubiquitin-like containi 99.9 1.6E-21 5.3E-26 125.0 9.4 73 1-73 3-77 (78)
28 1wgd_A Homocysteine-responsive 99.9 1.3E-21 4.6E-26 129.8 8.7 77 1-77 8-90 (93)
29 1uh6_A Ubiquitin-like 5; beta- 99.9 1.1E-21 3.6E-26 132.7 7.5 70 1-70 29-98 (100)
30 4eew_A Large proline-rich prot 99.9 2.9E-21 1E-25 126.5 9.4 71 1-72 18-88 (88)
31 3rt3_B Ubiquitin-like protein 99.9 3E-21 1E-25 138.9 10.0 77 1-77 82-158 (159)
32 2ojr_A Ubiquitin; lanthide-bin 99.9 5E-21 1.7E-25 131.1 10.6 76 1-76 36-111 (111)
33 2fnj_B Transcription elongatio 99.9 2.3E-21 7.8E-26 134.5 8.9 77 1-78 1-85 (118)
34 3b1l_X E3 ubiquitin-protein li 99.8 4.1E-23 1.4E-27 131.7 0.0 75 1-75 1-75 (76)
35 2lxa_A Ubiquitin-like protein 99.9 1.3E-21 4.5E-26 129.2 7.2 72 1-72 2-77 (87)
36 1we6_A Splicing factor, putati 99.9 1.7E-21 5.7E-26 133.5 7.9 79 1-79 28-110 (111)
37 3u5c_f 40S ribosomal protein S 99.8 4.1E-23 1.4E-27 149.2 -0.4 99 1-99 1-105 (152)
38 1j8c_A Ubiquitin-like protein 99.8 5E-21 1.7E-25 134.1 9.9 86 1-87 33-118 (125)
39 2dzi_A Ubiquitin-like protein 99.8 4.8E-21 1.6E-25 123.1 8.6 73 1-73 8-80 (81)
40 3m62_B UV excision repair prot 99.8 2.5E-21 8.7E-26 131.8 7.6 75 1-75 2-76 (106)
41 2wyq_A HHR23A, UV excision rep 99.8 1.3E-20 4.4E-25 122.4 10.0 73 1-73 6-81 (85)
42 2kdi_A Ubiquitin, vacuolar pro 99.8 1.3E-20 4.6E-25 129.8 10.6 77 1-77 10-86 (114)
43 1se9_A Ubiquitin family; ubiqu 99.8 9.2E-21 3.1E-25 132.8 9.7 78 1-78 17-108 (126)
44 4ajy_B Transcription elongatio 99.8 9.2E-21 3.1E-25 131.2 9.3 77 1-78 1-85 (118)
45 3q3f_A Ribonuclease/ubiquitin 99.8 5.7E-21 2E-25 142.3 8.4 77 1-77 106-182 (189)
46 2bwf_A Ubiquitin-like protein 99.8 2.6E-20 8.9E-25 118.6 9.7 71 1-72 5-75 (77)
47 1wx8_A Riken cDNA 4931431F19; 99.8 5.4E-21 1.9E-25 127.3 6.7 76 1-77 18-93 (96)
48 1wju_A NEDD8 ultimate buster-1 99.8 1.8E-20 6.1E-25 126.6 8.9 78 2-80 17-98 (100)
49 1yqb_A Ubiquilin 3; structural 99.8 1.6E-20 5.5E-25 126.6 8.6 76 1-77 23-98 (100)
50 1v2y_A 3300001G02RIK protein; 99.8 4.4E-21 1.5E-25 130.8 5.8 76 1-76 8-99 (105)
51 1ttn_A DC-UBP, dendritic cell- 99.8 1.6E-20 5.4E-25 127.7 8.5 77 1-77 24-100 (106)
52 4a20_A Ubiquitin-like protein 99.8 1.7E-20 5.7E-25 126.4 8.6 73 1-73 20-96 (98)
53 1wx7_A Ubiquilin 3; ubiquitin- 99.8 2.5E-20 8.4E-25 126.6 9.3 79 1-80 18-96 (106)
54 2gow_A HCG-1 protein, ubiquiti 99.8 1.5E-20 5.3E-25 131.7 7.8 79 1-79 18-106 (125)
55 1we7_A SF3A1 protein; structur 99.8 4.7E-20 1.6E-24 127.0 9.4 79 1-79 26-114 (115)
56 1v5o_A 1700011N24RIK protein; 99.8 2.6E-20 8.8E-25 125.8 7.9 77 1-77 8-89 (102)
57 3u30_A Ubiquitin, linear DI-ub 99.8 3.2E-20 1.1E-24 135.4 8.2 76 1-76 97-172 (172)
58 3u30_A Ubiquitin, linear DI-ub 99.8 8.4E-20 2.9E-24 133.2 10.1 76 1-76 21-96 (172)
59 3b08_A Polyubiquitin-C, ubiqui 99.8 1.2E-19 3.9E-24 128.8 10.3 76 1-76 77-152 (152)
60 2klc_A Ubiquilin-1; ubiquitin- 99.8 1.2E-19 4.2E-24 122.4 9.9 74 1-75 26-99 (101)
61 1wgh_A Ubiquitin-like 3, HCG-1 99.8 1.8E-19 6E-24 124.8 10.3 77 1-77 17-103 (116)
62 3rt3_B Ubiquitin-like protein 99.8 2.9E-19 9.8E-24 128.5 10.1 76 1-76 3-81 (159)
63 3b08_A Polyubiquitin-C, ubiqui 99.8 5.2E-19 1.8E-23 125.4 10.6 76 1-76 1-76 (152)
64 4dbg_A Ranbp-type and C3HC4-ty 99.8 5.4E-19 1.9E-23 120.3 9.7 72 1-72 25-99 (105)
65 2kdb_A Homocysteine-responsive 99.8 3.4E-19 1.2E-23 120.2 6.7 70 1-70 24-99 (99)
66 2xzm_9 RPS31E; ribosome, trans 99.8 1.4E-20 4.8E-25 140.0 -0.5 73 1-78 1-73 (189)
67 3m63_B Ubiquitin domain-contai 99.8 1.7E-19 5.7E-24 121.9 4.7 71 1-72 29-99 (101)
68 1wia_A Hypothetical ubiquitin- 99.8 1.4E-18 4.8E-23 115.4 8.5 73 1-76 8-81 (95)
69 2kd0_A LRR repeats and ubiquit 99.8 2.6E-18 8.9E-23 112.4 8.8 70 3-72 14-83 (85)
70 1v5t_A 8430435I17RIK protein; 99.8 1.5E-18 5E-23 114.7 7.4 71 1-72 8-82 (90)
71 1x1m_A Ubiquitin-like protein 99.8 2.9E-18 1E-22 116.6 8.3 74 1-74 13-101 (107)
72 1wgg_A Ubiquitin carboxyl-term 99.7 2.3E-18 7.9E-23 115.2 6.4 71 1-73 8-79 (96)
73 1wxv_A BAG-family molecular ch 99.7 1E-17 3.5E-22 110.7 8.8 72 1-73 8-85 (92)
74 2daf_A FLJ35834 protein; hypot 99.7 2.2E-17 7.5E-22 114.0 9.8 73 2-74 17-90 (118)
75 2dzj_A Synaptic glycoprotein S 99.7 5.1E-18 1.7E-22 112.0 5.8 69 1-69 11-85 (88)
76 2dzm_A FAS-associated factor 1 99.7 6.3E-18 2.2E-22 114.2 6.3 74 1-75 9-84 (100)
77 3ai5_A Yeast enhanced green fl 99.7 1.5E-17 5.3E-22 131.7 9.1 74 1-74 234-307 (307)
78 2kjr_A CG11242; UBL, ubiquitin 99.7 3.1E-17 1E-21 109.8 9.1 70 1-70 16-93 (95)
79 1v86_A DNA segment, CHR 7, way 99.7 5.4E-18 1.8E-22 113.1 5.1 70 1-72 18-87 (95)
80 4b6w_A Tubulin-specific chaper 99.7 1.2E-17 4.2E-22 109.8 6.2 71 2-72 4-83 (86)
81 2io1_B Small ubiquitin-related 99.7 5.3E-17 1.8E-21 108.4 8.9 78 1-78 8-85 (94)
82 1oqy_A HHR23A, UV excision rep 99.7 2.6E-17 9E-22 133.3 7.7 78 1-78 8-89 (368)
83 2kj6_A Tubulin folding cofacto 99.7 9.1E-17 3.1E-21 107.9 7.6 70 2-71 16-94 (97)
84 1wf9_A NPL4 family protein; be 99.7 6.8E-17 2.3E-21 110.0 5.0 71 1-72 8-94 (107)
85 2io0_B Small ubiquitin-related 99.7 6.4E-16 2.2E-20 102.6 9.5 77 1-77 6-82 (91)
86 1v6e_A Cytoskeleton-associated 99.6 3.6E-16 1.2E-20 104.1 7.2 71 1-71 8-86 (95)
87 2d07_B Ubiquitin-like protein 99.6 1.5E-15 5.1E-20 101.1 9.1 76 1-76 18-93 (93)
88 1t0y_A Tubulin folding cofacto 99.6 1.4E-15 4.9E-20 105.6 8.6 72 1-72 7-86 (122)
89 2kzr_A Ubiquitin thioesterase 99.6 7.6E-16 2.6E-20 100.7 5.4 70 1-71 1-76 (86)
90 1wz0_A Ubiquitin-like protein 99.6 2.9E-15 9.8E-20 101.7 7.8 78 1-78 25-102 (104)
91 2eke_C Ubiquitin-like protein 99.6 7.6E-15 2.6E-19 100.0 8.5 75 1-76 32-106 (106)
92 1wm3_A Ubiquitin-like protein 99.6 1.1E-14 3.8E-19 92.4 8.7 70 1-70 2-71 (72)
93 2k8h_A Small ubiquitin protein 99.6 5.2E-15 1.8E-19 101.4 6.7 77 1-77 27-103 (110)
94 3shq_A UBLCP1; phosphatase, hy 99.6 5.2E-15 1.8E-19 117.9 6.9 72 1-73 6-80 (320)
95 3a4r_A Nfatc2-interacting prot 99.5 6.8E-14 2.3E-18 90.3 9.2 70 1-70 8-78 (79)
96 1wjn_A Tubulin-folding protein 99.4 6E-13 2E-17 88.6 8.3 71 2-72 11-92 (97)
97 3kyd_D Small ubiquitin-related 99.3 2.4E-11 8.1E-16 83.7 9.8 75 1-75 41-115 (115)
98 3pge_A SUMO-modified prolifera 99.2 4E-11 1.4E-15 89.8 9.3 76 1-77 30-105 (200)
99 2ayj_A 50S ribosomal protein L 99.2 1.1E-12 3.7E-17 78.7 0.3 34 77-111 3-36 (56)
100 3tix_A Ubiquitin-like protein 99.2 5.7E-11 1.9E-15 88.3 6.7 76 1-77 58-133 (207)
101 3v7o_A Minor nucleoprotein VP3 99.0 2.2E-11 7.4E-16 91.6 0.1 85 1-86 22-106 (227)
102 2pjh_A Protein NPL4, nuclear p 99.0 3E-10 1E-14 73.4 3.1 69 1-70 5-78 (80)
103 3goe_A DNA repair protein RAD6 98.9 1.7E-08 5.8E-13 64.6 9.1 70 2-71 11-81 (82)
104 2jxx_A Nfatc2-interacting prot 98.7 7E-08 2.4E-12 64.4 8.7 70 1-70 26-96 (97)
105 3uf8_A Ubiquitin-like protein 98.7 4.7E-08 1.6E-12 73.3 7.9 75 2-77 23-97 (209)
106 3ix6_A TS, tsase, thymidylate 98.6 3.4E-09 1.2E-13 85.4 0.0 76 1-77 22-97 (360)
107 4efo_A Serine/threonine-protei 98.6 2.9E-07 9.8E-12 61.0 8.2 67 4-70 16-86 (94)
108 4da1_A Protein phosphatase 1K, 98.4 2.6E-08 8.9E-13 80.6 0.0 75 2-77 32-106 (389)
109 2l76_A Nfatc2-interacting prot 98.4 2E-06 6.7E-11 57.0 8.4 70 1-71 22-91 (95)
110 2al3_A TUG long isoform; TUG U 98.4 1.9E-06 6.6E-11 56.5 7.5 72 1-72 10-81 (90)
111 2kc2_A Talin-1, F1; FERM, adhe 98.3 1.3E-06 4.3E-11 61.0 6.0 69 3-71 14-121 (128)
112 2bps_A YUKD protein; ubiquitin 98.2 7.8E-06 2.7E-10 52.7 6.9 68 2-69 6-80 (81)
113 3qx1_A FAS-associated factor 1 98.0 5.4E-05 1.8E-09 48.5 8.7 69 2-71 9-82 (84)
114 2dzk_A UBX domain-containing p 97.7 0.00037 1.3E-08 46.9 8.8 70 2-71 15-89 (109)
115 1wj4_A KIAA0794 protein; UBX d 97.5 0.00042 1.4E-08 47.8 7.6 69 2-71 45-118 (124)
116 2cr5_A Reproduction 8; UBX dom 97.1 0.0048 1.7E-07 41.3 8.9 70 2-72 25-98 (109)
117 1s3s_G P47 protein; AAA ATPase 97.0 0.0022 7.6E-08 44.2 6.9 66 2-67 54-123 (127)
118 1ryj_A Unknown; beta/alpha pro 96.9 0.015 5.1E-07 35.7 9.3 66 1-76 5-70 (70)
119 3jyu_A Ubiquitin carboxyl-term 96.8 0.0085 2.9E-07 45.1 9.2 65 13-77 154-225 (231)
120 4a3p_A Ubiquitin carboxyl-term 96.8 0.0072 2.4E-07 45.1 8.5 66 12-77 141-213 (217)
121 2daj_A KIAA0977 protein, COBL- 96.7 0.0029 9.8E-08 40.9 5.0 62 2-63 12-76 (91)
122 3j21_g 50S ribosomal protein L 96.7 0.00034 1.2E-08 41.1 0.5 25 86-111 7-31 (51)
123 2l32_A Small archaeal modifier 96.5 0.0062 2.1E-07 38.1 5.6 66 1-76 1-66 (74)
124 4e71_A Plexin-B2, MM1; transme 96.2 0.04 1.4E-06 37.2 8.5 63 10-72 23-110 (111)
125 3rpf_C Molybdopterin convertin 96.2 0.023 7.8E-07 35.0 6.9 71 1-76 1-74 (74)
126 3ivf_A Talin-1; FERM domain, c 96.0 0.038 1.3E-06 43.8 8.9 74 3-77 6-96 (371)
127 1vjk_A Molybdopterin convertin 95.9 0.063 2.2E-06 34.8 8.4 71 1-76 10-98 (98)
128 2juo_A GA-binding protein alph 95.8 0.057 1.9E-06 34.7 7.3 60 15-74 7-66 (89)
129 3h6n_A Plexin-D1; structural g 95.7 0.099 3.4E-06 36.0 8.8 64 9-72 15-104 (127)
130 2r2o_A Plexin-B1; effector dom 95.3 0.097 3.3E-06 36.6 7.6 63 11-73 41-129 (138)
131 3dwg_C 9.5 kDa culture filtrat 95.0 0.2 6.8E-06 31.9 8.2 74 1-76 1-93 (93)
132 3po0_A Small archaeal modifier 95.0 0.36 1.2E-05 30.3 9.3 61 11-76 18-89 (89)
133 1oey_A P67-PHOX, neutrophil cy 94.9 0.061 2.1E-06 34.4 5.4 45 2-48 7-51 (83)
134 4e74_A Plexin-A4; RBD, structu 94.8 0.11 3.8E-06 35.3 6.8 63 11-73 27-115 (117)
135 1f0z_A THis protein; ubiquitin 94.3 0.092 3.1E-06 31.5 4.9 66 1-76 1-66 (66)
136 2kvr_A Ubiquitin carboxyl-term 94.1 0.055 1.9E-06 37.3 4.1 34 13-46 58-91 (130)
137 1tyg_B YJBS; alpha beta barrel 93.9 0.25 8.6E-06 31.6 6.7 61 9-76 26-87 (87)
138 2kl0_A Putative thiamin biosyn 93.9 0.065 2.2E-06 33.2 3.7 66 1-77 1-66 (73)
139 2k5p_A THis protein, thiamine- 93.7 0.092 3.2E-06 32.9 4.2 68 1-78 1-71 (78)
140 1ef1_A Moesin; membrane, FERM 93.3 0.55 1.9E-05 35.6 8.9 71 1-72 2-78 (294)
141 1fm0_D Molybdopterin convertin 93.3 0.25 8.5E-06 30.4 5.8 60 11-76 17-81 (81)
142 3kuz_A Plexin-C1; structural g 93.2 0.8 2.7E-05 31.4 8.5 61 11-71 39-125 (126)
143 2cu3_A Unknown function protei 93.0 0.23 8E-06 29.5 5.2 61 8-76 4-64 (64)
144 2q5w_D Molybdopterin convertin 93.0 0.21 7.1E-06 30.5 5.0 60 11-76 16-77 (77)
145 3ig3_A Plxna3 protein; plexin 92.8 0.7 2.4E-05 39.5 9.4 64 11-74 247-336 (627)
146 1h4r_A Merlin; FERM, neurofibr 92.7 0.84 2.9E-05 35.0 9.3 70 2-72 24-98 (314)
147 1vd2_A Protein kinase C, IOTA 92.7 0.56 1.9E-05 30.2 6.9 46 3-48 7-54 (89)
148 1y8x_B Ubiquitin-activating en 92.6 0.14 4.8E-06 33.7 4.0 59 12-70 6-82 (98)
149 1wgk_A Riken cDNA 2900073H19 p 92.5 0.39 1.3E-05 32.2 6.2 75 1-77 12-109 (114)
150 2qjl_A URM1, ubiquitin-related 91.9 1.6 5.6E-05 28.0 8.7 73 1-76 2-99 (99)
151 3ivf_A Talin-1; FERM domain, c 91.4 1.2 4E-05 35.1 8.8 71 2-72 87-167 (371)
152 2kmc_A Fermitin family homolog 91.0 2.3 7.9E-05 28.0 8.6 71 2-72 21-99 (102)
153 3onh_A Ubiquitin-activating en 90.8 0.53 1.8E-05 32.3 5.4 56 14-70 9-77 (127)
154 3hm6_X Plexin-B1; structural g 90.6 1.4 4.6E-05 37.8 8.8 65 11-75 274-364 (644)
155 2k9x_A Tburm1, uncharacterized 90.6 0.11 3.8E-06 34.7 1.8 75 1-77 5-103 (110)
156 2l52_A Methanosarcina acetivor 90.4 1.6 5.5E-05 28.1 7.4 72 1-76 4-99 (99)
157 2g1e_A Hypothetical protein TA 89.8 1.4 4.9E-05 27.3 6.6 62 14-76 18-90 (90)
158 2i1j_A Moesin; FERM, coiled-co 89.7 1.7 5.8E-05 36.7 8.8 71 1-72 5-81 (575)
159 2kmm_A Guanosine-3',5'-BIS(dip 89.7 1.4 4.8E-05 26.2 6.3 62 1-71 1-62 (73)
160 3qij_A Protein 4.1; cytoskelet 89.6 1.5 5.3E-05 33.5 7.9 72 1-72 18-95 (296)
161 1rws_A Hypothetical protein PF 88.5 0.1 3.5E-06 32.3 0.4 54 14-76 24-77 (77)
162 4eut_A Serine/threonine-protei 88.3 2.2 7.5E-05 33.2 8.1 51 11-61 322-374 (396)
163 2ylm_A Ubiquitin carboxyl-term 87.9 0.51 1.7E-05 39.5 4.3 33 13-45 38-70 (530)
164 1wgy_A RAP guanine nucleotide 86.0 4.7 0.00016 26.6 7.4 67 5-73 14-87 (104)
165 3qa8_A MGC80376 protein; kinas 85.7 0.75 2.6E-05 39.6 4.3 50 10-59 321-371 (676)
166 1ip9_A BEM1 protein; ubiquitin 84.7 3.1 0.00011 26.5 5.8 37 9-47 20-57 (85)
167 1wgr_A Growth factor receptor- 84.1 2.6 8.8E-05 27.6 5.4 38 3-40 12-49 (100)
168 3u52_E Phenol hydroxylase comp 81.3 9.3 0.00032 25.8 7.4 59 12-70 39-107 (119)
169 1q1o_A Cell division control p 76.1 2.7 9.3E-05 27.5 3.4 28 10-37 22-49 (98)
170 1j0g_A Hypothetical protein 18 74.7 13 0.00043 23.6 6.1 64 13-76 26-90 (92)
171 3ge3_C Toluene-4-monooxygenase 74.0 14 0.00048 23.3 6.9 59 13-71 17-82 (84)
172 2inc_C TOUB protein; DIIRON, 4 73.4 15 0.0005 23.2 8.4 59 13-71 15-81 (83)
173 3au4_A Myosin-X; protein-prote 71.8 6.5 0.00022 32.5 5.6 45 1-45 217-263 (555)
174 3r8s_T 50S ribosomal protein L 69.7 14 0.00047 23.7 5.6 40 10-49 27-67 (93)
175 2ylm_A Ubiquitin carboxyl-term 68.5 4.7 0.00016 33.6 4.0 70 3-72 133-217 (530)
176 2eel_A Cell death activator CI 68.4 16 0.00054 23.4 5.7 50 21-73 28-79 (91)
177 3tca_A Amyloid beta A4 precurs 68.0 14 0.00048 27.3 6.3 38 3-40 37-74 (291)
178 3hk0_A Growth factor receptor- 67.4 16 0.00054 27.6 6.5 55 3-57 11-72 (256)
179 4gmv_A RAS-associated and plec 66.2 13 0.00044 28.5 5.8 56 3-58 34-96 (281)
180 3pvl_A Myosin VIIA isoform 1; 65.4 9.8 0.00034 32.5 5.5 45 1-45 264-309 (655)
181 1v8c_A MOAD related protein; r 64.5 14 0.00047 26.1 5.3 63 14-78 17-89 (168)
182 2v1y_A Phosphatidylinositol-4, 64.2 13 0.00044 24.6 4.8 31 3-33 22-52 (108)
183 2hj1_A Hypothetical protein; s 63.9 12 0.00041 24.1 4.5 56 11-71 26-84 (97)
184 2dhz_A RAP guanine nucleotide 63.7 15 0.00052 24.7 5.1 64 7-72 16-92 (120)
185 3hvz_A Uncharacterized protein 63.0 23 0.00078 21.7 5.5 61 2-71 7-67 (78)
186 2lgx_A Fermitin family homolog 61.4 2.2 7.5E-05 28.5 0.5 61 11-71 36-101 (112)
187 1vq8_S 50S ribosomal protein L 60.2 16 0.00055 23.0 4.5 35 10-44 22-56 (85)
188 2c7h_A RBBP6, retinoblastoma-b 59.5 31 0.001 21.8 6.1 41 3-43 9-51 (86)
189 1pqs_A Cell division control p 58.8 6.2 0.00021 24.5 2.3 36 12-47 3-43 (77)
190 2zjr_Q 50S ribosomal protein L 57.3 16 0.00055 23.5 4.2 36 13-48 25-61 (95)
191 3j21_T 50S ribosomal protein L 55.6 22 0.00075 22.4 4.5 35 10-44 23-57 (86)
192 3h9d_A ATG8, microtubule-assoc 55.4 30 0.001 23.1 5.5 58 15-72 52-113 (119)
193 3tve_T 50S ribosomal protein L 54.1 21 0.00071 22.8 4.3 40 10-49 21-61 (92)
194 2nvu_B Maltose binding protein 50.3 38 0.0013 29.2 6.6 59 12-70 713-789 (805)
195 2zjd_A Microtubule-associated 49.0 30 0.001 23.5 4.7 59 14-72 56-119 (130)
196 3m95_A Autophagy related prote 47.7 33 0.0011 23.1 4.7 59 14-72 56-118 (125)
197 2r2q_A Gamma-aminobutyric acid 46.8 36 0.0012 22.2 4.7 46 14-59 47-93 (110)
198 3lxf_A Ferredoxin; iron, iron- 46.2 28 0.00096 22.1 4.1 26 2-27 2-27 (104)
199 3rui_B Autophagy-related prote 45.6 40 0.0014 22.4 4.8 59 14-72 50-112 (118)
200 1eo6_A GATE-16, golgi-associat 43.8 43 0.0015 22.1 4.8 59 14-72 48-110 (117)
201 1f2r_I Inhibitor of caspase-ac 43.0 66 0.0023 20.8 5.5 49 21-72 37-89 (100)
202 1c1y_B Proto-onkogene serine/t 40.6 63 0.0022 19.9 5.0 42 3-44 4-45 (77)
203 1n62_A Carbon monoxide dehydro 38.8 29 0.001 24.4 3.5 27 2-29 5-31 (166)
204 2zkr_s 60S ribosomal protein L 38.1 47 0.0016 23.3 4.4 33 11-43 94-126 (156)
205 4dxa_B KREV interaction trappe 37.9 38 0.0013 25.8 4.3 34 1-38 6-41 (322)
206 3hrd_D Nicotinate dehydrogenas 37.6 28 0.00097 24.4 3.2 26 2-28 5-30 (160)
207 3chb_D Cholera toxin; toxin/re 36.7 39 0.0013 21.4 3.4 31 3-33 39-69 (104)
208 1ffv_A CUTS, iron-sulfur prote 36.2 35 0.0012 23.9 3.5 27 2-29 5-31 (163)
209 4gdk_A Ubiquitin-like protein 36.1 52 0.0018 20.7 4.1 60 13-72 22-85 (91)
210 1t3q_A Quinoline 2-oxidoreduct 36.0 42 0.0014 23.3 4.0 28 1-29 10-37 (168)
211 2al6_A Focal adhesion kinase 1 36.0 32 0.0011 26.9 3.6 54 5-58 12-76 (375)
212 4a17_R RPL23A, 60S ribosomal p 35.7 58 0.002 22.7 4.5 34 10-43 87-120 (150)
213 4eku_A Protein-tyrosine kinase 35.3 53 0.0018 26.1 4.9 52 8-59 35-97 (392)
214 2bt6_A Adrenodoxin 1; rutheniu 34.9 46 0.0016 21.0 3.8 25 2-26 8-32 (108)
215 3u5e_X 60S ribosomal protein L 33.9 61 0.0021 22.4 4.4 33 11-43 80-112 (142)
216 2wlb_A ETP1-FD, electron trans 31.3 66 0.0023 20.0 4.0 27 2-28 5-31 (103)
217 2y5c_A Adrenodoxin-like protei 29.7 63 0.0022 20.4 3.8 25 2-26 7-31 (109)
218 3f5r_A FACT complex subunit PO 29.4 49 0.0017 24.0 3.4 46 2-47 86-131 (191)
219 2cu1_A Mitogen-activated prote 28.8 1.1E+02 0.0037 19.9 4.7 42 3-47 9-51 (103)
220 3iz5_X 60S ribosomal protein L 27.6 65 0.0022 22.5 3.7 34 11-44 90-123 (152)
221 1uwm_A Ferredoxin VI, FDVI; el 27.5 94 0.0032 19.3 4.3 26 2-27 2-27 (106)
222 1wxm_A A-RAF proto-oncogene se 26.8 1.2E+02 0.0042 19.0 5.9 42 3-44 10-51 (86)
223 1xlq_A Putidaredoxin, PDX; [2F 26.7 89 0.003 19.4 4.1 26 2-27 2-27 (106)
224 1ltr_D ETB-R2, heat-labIle ent 25.5 51 0.0018 21.2 2.6 31 3-33 38-68 (113)
225 1rm6_C 4-hydroxybenzoyl-COA re 25.2 89 0.0031 21.6 4.1 27 3-30 5-31 (161)
226 3hui_A Ferredoxin; cytochrome 24.9 99 0.0034 20.4 4.1 25 2-26 23-47 (126)
227 3cjl_A Domain of unknown funct 24.9 74 0.0025 20.1 3.2 37 2-38 7-45 (88)
228 4dxe_H ACP, acyl carrier prote 24.8 53 0.0018 20.7 2.6 41 13-62 18-59 (101)
229 2y3a_A Phosphatidylinositol-4, 23.9 92 0.0032 28.4 4.8 69 3-72 54-136 (1092)
230 2x5r_A Hypothetical protein OR 23.8 31 0.0011 22.3 1.3 43 60-102 44-86 (127)
231 1awd_A Ferredoxin; electron tr 22.8 1.1E+02 0.0036 18.6 3.8 27 1-28 1-27 (94)
232 3bbo_V Ribosomal protein L23; 22.7 36 0.0012 24.8 1.6 32 10-41 131-162 (198)
233 1jq4_A Methane monooxygenase c 22.6 94 0.0032 19.0 3.5 27 2-28 6-32 (98)
234 1tt5_B Ubiquitin-activating en 22.5 23 0.00079 28.7 0.6 56 14-69 344-417 (434)
235 1dd4_C 50S ribosomal protein L 22.4 70 0.0024 17.1 2.4 20 20-39 12-34 (40)
236 1y8q_B Anthracycline-, ubiquit 22.0 1.2E+02 0.0041 25.9 4.9 58 12-69 449-519 (640)
237 1frr_A Ferredoxin I; electron 21.8 1.2E+02 0.0041 18.3 3.9 26 2-28 3-28 (95)
238 2nnz_A Hypothetical protein; b 21.8 41 0.0014 23.3 1.7 29 1-30 30-61 (153)
239 1ibx_B Chimera of IGG binding 21.7 70 0.0024 22.2 2.9 49 21-72 82-134 (145)
240 1wfy_A Regulator of G-protein 21.2 78 0.0027 20.7 2.9 60 8-70 25-86 (104)
No 1
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=100.00 E-value=3.5e-37 Score=216.92 Aligned_cols=110 Identities=84% Similarity=1.106 Sum_probs=33.8
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeCCEEccCCccccccccCCCCEEEEEEEecCCccCC
Q 032678 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEP 80 (136)
Q Consensus 1 MqI~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~gG~~~~ 80 (136)
|+|+|++.+|+++.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+++++++||.+++
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl~GG~~~~ 80 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEP 80 (128)
T ss_dssp ----------------------------------------------------------------------------CCCH
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEEcCCCCCCh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHhhcCCCcceeeccccccCCcceeee
Q 032678 81 SLMALARKYNQDKMICRKYAHVSLFLFFSFI 111 (136)
Q Consensus 81 s~~~~a~k~n~~k~~cr~~~ya~~~~~a~~~ 111 (136)
+++.+|+++|+++++||+| |||+|++|++|
T Consensus 81 sl~~la~k~n~~~~ic~~~-~~~~~~~~~~~ 110 (128)
T 3u5e_m 81 SLKALASKYNCDKSVCRKC-YARLPPRATNC 110 (128)
T ss_dssp HHHHHHHHHHTSCEEETTT-CCEECTTCSSC
T ss_pred hHHHHHHHhhcceEeeccc-cccCCchhhcc
Confidence 9999999999999999999 99999999999
No 2
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.91 E-value=2.2e-24 Score=142.22 Aligned_cols=82 Identities=52% Similarity=0.823 Sum_probs=73.3
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeCCEEccCCccccccccCCCCEEEEEEEecCCccCC
Q 032678 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEP 80 (136)
Q Consensus 1 MqI~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~gG~~~~ 80 (136)
|+|+||+.+|+++.+++++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|||++|++|+++++++||....
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~rl~Gg~~~~ 80 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGGGGLR 80 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECBCC------
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEECCCCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999997655
Q ss_pred ch
Q 032678 81 SL 82 (136)
Q Consensus 81 s~ 82 (136)
+.
T Consensus 81 ~~ 82 (88)
T 4fbj_B 81 QK 82 (88)
T ss_dssp --
T ss_pred cc
Confidence 43
No 3
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.90 E-value=9.7e-24 Score=135.77 Aligned_cols=75 Identities=36% Similarity=0.595 Sum_probs=73.5
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeCCEEccCCccccccccCCCCEEEEEEEecC
Q 032678 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (136)
Q Consensus 1 MqI~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~g 75 (136)
|+|+||+.+|+++.++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|||++|++||++++++|
T Consensus 5 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~rl~G 79 (79)
T 3phx_B 5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRG 79 (79)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCBC
T ss_pred EEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 799999999999999999999999999999999999999999999999999999999999999999999999886
No 4
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.90 E-value=2.9e-23 Score=131.68 Aligned_cols=76 Identities=57% Similarity=0.952 Sum_probs=73.0
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeCCEEccCCccccccccCCCCEEEEEEEecCC
Q 032678 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (136)
Q Consensus 1 MqI~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~gG 76 (136)
|+|+||+.+|+++.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+++++++||
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC--
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999997
No 5
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.89 E-value=7.6e-23 Score=129.70 Aligned_cols=76 Identities=95% Similarity=1.320 Sum_probs=74.7
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeCCEEccCCccccccccCCCCEEEEEEEecCC
Q 032678 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (136)
Q Consensus 1 MqI~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~gG 76 (136)
|+|+|++.+|+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+++++++||
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLRLRGG 76 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCC
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999998
No 6
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.89 E-value=3.3e-23 Score=134.46 Aligned_cols=80 Identities=76% Similarity=1.061 Sum_probs=73.1
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeCCEEccCCccccccccCCCCEEEEEEEecCCccCC
Q 032678 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEP 80 (136)
Q Consensus 1 MqI~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~gG~~~~ 80 (136)
|+|+||+.+|+++.+++++++||.+||++|++++++|+++|+|+|+|+.|+|+.+|++|+|+++++|+++++++||....
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG~g~~ 83 (85)
T 3n3k_B 4 MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLKLRGGGGGG 83 (85)
T ss_dssp CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEECCC------
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeccCCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999997543
No 7
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.89 E-value=4.5e-23 Score=135.86 Aligned_cols=78 Identities=85% Similarity=1.232 Sum_probs=70.3
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeCCEEccCCccccccccCCCCEEEEEEEecCCcc
Q 032678 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGII 78 (136)
Q Consensus 1 MqI~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~gG~~ 78 (136)
|+|+|++.+|+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+++++++||+.
T Consensus 10 ~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r~~GG~~ 87 (88)
T 1sif_A 10 LQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGL 87 (88)
T ss_dssp CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC-------
T ss_pred eEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCCCC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999999964
No 8
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.89 E-value=5.5e-23 Score=134.33 Aligned_cols=79 Identities=33% Similarity=0.494 Sum_probs=76.6
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeCCEEccCCccccccccCCCCEEEEEEEecCCccC
Q 032678 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIE 79 (136)
Q Consensus 1 MqI~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~gG~~~ 79 (136)
|+|+||+.+|+++.+++++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|++|++||++++++||+..
T Consensus 8 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~~GG~~~ 86 (87)
T 1wh3_A 8 IQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKGSGPSS 86 (87)
T ss_dssp EEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECSCCCSCC
T ss_pred EEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEeccCCCCC
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999999999754
No 9
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.89 E-value=2.9e-23 Score=135.65 Aligned_cols=76 Identities=58% Similarity=0.975 Sum_probs=74.7
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeCCEEccCCccccccccCCCCEEEEEEEecCC
Q 032678 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (136)
Q Consensus 1 MqI~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~gG 76 (136)
|+|+||+.+|+++.++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+++++++||
T Consensus 13 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 88 (88)
T 3dbh_I 13 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLRLRGG 88 (88)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCCCCCC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999999998
No 10
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.89 E-value=6e-23 Score=137.72 Aligned_cols=76 Identities=97% Similarity=1.333 Sum_probs=74.9
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeCCEEccCCccccccccCCCCEEEEEEEecCC
Q 032678 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (136)
Q Consensus 1 MqI~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~gG 76 (136)
|+|+||+.+|+++.++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|||++|++|+++++++||
T Consensus 23 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~rl~GG 98 (98)
T 4hcn_B 23 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 98 (98)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECBCSCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999998
No 11
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.89 E-value=6.9e-23 Score=132.77 Aligned_cols=80 Identities=88% Similarity=1.144 Sum_probs=74.9
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeCCEEccCCccccccccCCCCEEEEEEEecCCccCC
Q 032678 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEP 80 (136)
Q Consensus 1 MqI~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~gG~~~~ 80 (136)
|+|+|++.+|+++.+++++++||.+||++|++++++|+++|+|+|+|+.|+|+.+|++|+|+++++|+++++++||+...
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~~GG~ggg 83 (85)
T 3mtn_B 4 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRLRGGGGGG 83 (85)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCCCCC----
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEECcCCCCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999997544
No 12
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.88 E-value=5.4e-23 Score=132.27 Aligned_cols=76 Identities=18% Similarity=0.448 Sum_probs=73.8
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeCCEEccCCccccccccCCCCEEEEEEEecCC
Q 032678 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (136)
Q Consensus 1 MqI~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~gG 76 (136)
|+|+|++.+|+++.++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.||++|+|++|++|+++++++||
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~~~GG 79 (79)
T 2uyz_B 4 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 79 (79)
T ss_dssp EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCCC-
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999997
No 13
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.88 E-value=1.7e-22 Score=134.28 Aligned_cols=77 Identities=94% Similarity=1.256 Sum_probs=74.1
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeCCEEccCCccccccccCCCCEEEEEEEecCCc
Q 032678 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 77 (136)
Q Consensus 1 MqI~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~gG~ 77 (136)
|+|+||+.+|+++.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+++++++||.
T Consensus 2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r~~gG~ 78 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGYA 78 (96)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC--
T ss_pred cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999995
No 14
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.88 E-value=1.2e-22 Score=135.30 Aligned_cols=70 Identities=23% Similarity=0.433 Sum_probs=68.7
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeCCEEccCCccccccccCCCCEEEEE
Q 032678 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (136)
Q Consensus 1 MqI~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~ 70 (136)
|+|+||++.|+++.++++|++||.+||++|+++.|+||++|||+|+|++|+|+.||++|+|++|++|+|.
T Consensus 22 IqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~ 91 (93)
T 3plu_A 22 IEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELY 91 (93)
T ss_dssp EEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEE
T ss_pred EEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEE
Confidence 6999999999999999999999999999999999999999999999999999999999999999999986
No 15
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.88 E-value=3.2e-22 Score=131.33 Aligned_cols=78 Identities=36% Similarity=0.592 Sum_probs=75.0
Q ss_pred CEEEEEeCCC-CEEEE-EecCCCcHHHHHHHHhhhhCCCCCCeEEEeCCEEccCCccccccccCCCCEEEEEEEecCCcc
Q 032678 1 MQIFVKTLTG-KTITL-EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGII 78 (136)
Q Consensus 1 MqI~Vk~~~g-~~~~i-~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~gG~~ 78 (136)
|+|+||+.+| +++.+ ++++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|||++|++||++++++||..
T Consensus 8 m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~gG~~ 87 (89)
T 1wy8_A 8 MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRPDSGPS 87 (89)
T ss_dssp EEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECCCCSSC
T ss_pred EEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeCCCCCC
Confidence 7999999999 79999 599999999999999999999999999999999999999999999999999999999999963
No 16
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.88 E-value=1.1e-22 Score=133.90 Aligned_cols=77 Identities=36% Similarity=0.620 Sum_probs=70.9
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeCCEEccCCccccccccCCCCEEEEEEEecCCc
Q 032678 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 77 (136)
Q Consensus 1 MqI~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~gG~ 77 (136)
|+|+||+.+|+++.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+++|++|||++|++|+++.+++||+
T Consensus 5 m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~~gg~ 81 (88)
T 2hj8_A 5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGL 81 (88)
T ss_dssp EEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC-----
T ss_pred EEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999986
No 17
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.87 E-value=3.5e-22 Score=131.50 Aligned_cols=79 Identities=33% Similarity=0.553 Sum_probs=72.3
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeCCEEccCCccccccccCCCCEEEEEEEecCCccCC
Q 032678 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEP 80 (136)
Q Consensus 1 MqI~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~gG~~~~ 80 (136)
|+|+||+.+|+++.++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++||| +|++||++++.+++...+
T Consensus 6 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~~~~~~~~ 84 (90)
T 4dwf_A 6 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERAPPQTHLP 84 (90)
T ss_dssp EEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECCCC-----
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecCCCCCCCC
Confidence 7999999999999999999999999999999999999999999999999999999999999 899999999988775433
No 18
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.87 E-value=2.1e-22 Score=134.96 Aligned_cols=76 Identities=18% Similarity=0.448 Sum_probs=74.7
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeCCEEccCCccccccccCCCCEEEEEEEecCC
Q 032678 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (136)
Q Consensus 1 MqI~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~gG 76 (136)
|+|+|++.+|+++.++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.||++|+|++|++||++++++||
T Consensus 22 m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~~~GG 97 (97)
T 1wyw_B 22 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97 (97)
T ss_dssp EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEESSSCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEecCCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999998
No 19
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.87 E-value=4.3e-22 Score=131.61 Aligned_cols=74 Identities=92% Similarity=1.261 Sum_probs=72.0
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeCCEEccCCccccccccCCCCEEEEEEEec
Q 032678 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (136)
Q Consensus 1 MqI~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~ 74 (136)
|+|+||+.+|+++.+++++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|||++|++|++++|++
T Consensus 18 m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~rlr 91 (91)
T 3v6c_B 18 MQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 91 (91)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECCCC
T ss_pred EEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEecC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999998865
No 20
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.87 E-value=5.6e-22 Score=136.05 Aligned_cols=76 Identities=96% Similarity=1.322 Sum_probs=73.9
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeCCEEccCCccccccccCCCCEEEEEEEecCC
Q 032678 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (136)
Q Consensus 1 MqI~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~gG 76 (136)
|+|+||+++|+++.++|++++||.+||++|+.++|+|+++|+|+|+|+.|+|+.+|++|||++|++||++++++||
T Consensus 36 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~GG 111 (111)
T 3vdz_A 36 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEECCCC-
T ss_pred EEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999999998
No 21
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.87 E-value=5.6e-22 Score=132.39 Aligned_cols=76 Identities=28% Similarity=0.452 Sum_probs=73.5
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeCCEEccCC-ccccccccCCCCEEEEEEEecCCc
Q 032678 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLRGGI 77 (136)
Q Consensus 1 MqI~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~-~tL~~ygI~~gstI~l~~r~~gG~ 77 (136)
|+|+||+.+| ++.++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+ .+|++|||++|++|+++++++||.
T Consensus 16 ~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~~gg~ 92 (94)
T 2kan_A 16 IHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKSINRA 92 (94)
T ss_dssp EEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECCCSSC
T ss_pred EEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeCCCCC
Confidence 7899999988 899999999999999999999999999999999999999999 999999999999999999999985
No 22
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.87 E-value=4.7e-22 Score=130.24 Aligned_cols=72 Identities=33% Similarity=0.489 Sum_probs=70.3
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeCCEE-ccCCccccccccCCCCEEEEEEE
Q 032678 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRTLADYNIQKESTLHLVLR 72 (136)
Q Consensus 1 MqI~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~-L~D~~tL~~ygI~~gstI~l~~r 72 (136)
|+|+|++++|++++++|++++||++||++|++++|+|+++|+|+|+|+. |+|+++|++|||++|++|+++++
T Consensus 11 ~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~ 83 (84)
T 2kk8_A 11 MKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVS 83 (84)
T ss_dssp EEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEEC
T ss_pred eEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEc
Confidence 8999999999999999999999999999999999999999999999999 99999999999999999999875
No 23
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.87 E-value=1.2e-21 Score=143.46 Aligned_cols=77 Identities=96% Similarity=1.296 Sum_probs=74.3
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeCCEEccCCccccccccCCCCEEEEEEEecCCc
Q 032678 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 77 (136)
Q Consensus 1 MqI~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~gG~ 77 (136)
|+|+||+.+|+++.++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|||++|++||++++++||.
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlrl~GG~ 77 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 77 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCCC--
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEEecccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999995
No 24
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.87 E-value=5.1e-22 Score=132.19 Aligned_cols=74 Identities=36% Similarity=0.620 Sum_probs=72.3
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeCCEEccCCccccccccCCCCEEEEEEEecCC
Q 032678 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (136)
Q Consensus 1 MqI~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~gG 76 (136)
|+|+||+ |+++.++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+++++++||
T Consensus 20 m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~rl~GG 93 (93)
T 2l7r_A 20 MQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRMLGG 93 (93)
T ss_dssp CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECCCCCC
T ss_pred EEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 8999997 8999999999999999999999999999999999999999999999999999999999999999998
No 25
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.87 E-value=1.4e-21 Score=130.75 Aligned_cols=77 Identities=95% Similarity=1.295 Sum_probs=74.7
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeCCEEccCCccccccccCCCCEEEEEEEecCCc
Q 032678 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 77 (136)
Q Consensus 1 MqI~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~gG~ 77 (136)
|+|+||+.+|+++.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+++.+.+||.
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~gG~ 77 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGR 77 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCCC-
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999884
No 26
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.86 E-value=3.2e-21 Score=128.59 Aligned_cols=77 Identities=29% Similarity=0.573 Sum_probs=73.0
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHhhh---hCCCCCCeEEEeCCEEccCCccccccccCCCCEEEEEEEecCCc
Q 032678 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 77 (136)
Q Consensus 1 MqI~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~---~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~gG~ 77 (136)
|+|+||+.+|+.+.++|++++||.+||++|+.. +|+|+++|+|+|+|+.|+|+.+|++|||++|++|+++++...|.
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~~~~~ 80 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAV 80 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESSCCCC
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeCCCCC
Confidence 899999999999999999999999999999999 88999999999999999999999999999999999999865543
No 27
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.86 E-value=1.6e-21 Score=124.97 Aligned_cols=73 Identities=36% Similarity=0.643 Sum_probs=70.4
Q ss_pred CEEEEEeCCCCEE-EEE-ecCCCcHHHHHHHHhhhhCCCCCCeEEEeCCEEccCCccccccccCCCCEEEEEEEe
Q 032678 1 MQIFVKTLTGKTI-TLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (136)
Q Consensus 1 MqI~Vk~~~g~~~-~i~-v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~ 73 (136)
|+|+||+.+|+++ .++ +++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|||++|++||+++++
T Consensus 3 m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r~ 77 (78)
T 2faz_A 3 MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQ 77 (78)
T ss_dssp EEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECC
T ss_pred EEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeC
Confidence 8999999999985 999 999999999999999999999999999999999999999999999999999999875
No 28
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.86 E-value=1.3e-21 Score=129.81 Aligned_cols=77 Identities=29% Similarity=0.465 Sum_probs=73.4
Q ss_pred CEEEEEeCCCC--EEEEEecCCCcHHHHHHHHhhhh--CCCCCCeEEEeCCEEccCCcccccc--ccCCCCEEEEEEEec
Q 032678 1 MQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKE--GIPPDQQRLIFAGKQLEDGRTLADY--NIQKESTLHLVLRLR 74 (136)
Q Consensus 1 MqI~Vk~~~g~--~~~i~v~~~~TV~~LK~~I~~~~--gip~~~qrLi~~Gk~L~D~~tL~~y--gI~~gstI~l~~r~~ 74 (136)
|+|+||+.+|+ ++.+++++++||.+||++|++++ ++|+++|||+|+|+.|+|+.+|++| +|+++++|||+++++
T Consensus 8 m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~~~~ 87 (93)
T 1wgd_A 8 VTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVCNVK 87 (93)
T ss_dssp CEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEECCCC
T ss_pred EEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEeCCC
Confidence 79999999998 67778889999999999999998 9999999999999999999999999 999999999999999
Q ss_pred CCc
Q 032678 75 GGI 77 (136)
Q Consensus 75 gG~ 77 (136)
||.
T Consensus 88 gg~ 90 (93)
T 1wgd_A 88 SGP 90 (93)
T ss_dssp CCC
T ss_pred CCC
Confidence 996
No 29
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.85 E-value=1.1e-21 Score=132.68 Aligned_cols=70 Identities=23% Similarity=0.328 Sum_probs=68.5
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeCCEEccCCccccccccCCCCEEEEE
Q 032678 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (136)
Q Consensus 1 MqI~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~ 70 (136)
|+|+||+++|+++.++|++++||.+||++|++++|+|+++|||+|+|++|+|+.+|++|||+++++|+|+
T Consensus 29 m~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~ 98 (100)
T 1uh6_A 29 IEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELY 98 (100)
T ss_dssp EEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEE
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEE
Confidence 7999999999999999999999999999999999999999999999999999999999999999999986
No 30
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.85 E-value=2.9e-21 Score=126.53 Aligned_cols=71 Identities=35% Similarity=0.627 Sum_probs=68.9
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeCCEEccCCccccccccCCCCEEEEEEE
Q 032678 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (136)
Q Consensus 1 MqI~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r 72 (136)
|+|+||+.+|+++.+++++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++||| +|++||+++|
T Consensus 18 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i-~g~~i~lv~R 88 (88)
T 4eew_A 18 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVER 88 (88)
T ss_dssp EEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcHHHcCC-CCcEEEEEEC
Confidence 7899999999999999999999999999999999999999999999999999999999999 8999999875
No 31
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.85 E-value=3e-21 Score=138.92 Aligned_cols=77 Identities=36% Similarity=0.589 Sum_probs=72.9
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeCCEEccCCccccccccCCCCEEEEEEEecCCc
Q 032678 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 77 (136)
Q Consensus 1 MqI~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~gG~ 77 (136)
|+|+||+.+|+++.++|++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|||++|++||++++++||.
T Consensus 82 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~rl~GG~ 158 (159)
T 3rt3_B 82 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGG 158 (159)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC---
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEecCCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999984
No 32
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.85 E-value=5e-21 Score=131.14 Aligned_cols=76 Identities=96% Similarity=1.322 Sum_probs=73.6
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeCCEEccCCccccccccCCCCEEEEEEEecCC
Q 032678 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (136)
Q Consensus 1 MqI~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~gG 76 (136)
|+|+||+.+|+++.++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+++|++|||++|++||++++++||
T Consensus 36 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~GG 111 (111)
T 2ojr_A 36 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEECCCC-
T ss_pred EEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999997
No 33
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.85 E-value=2.3e-21 Score=134.52 Aligned_cols=77 Identities=27% Similarity=0.421 Sum_probs=71.6
Q ss_pred CEEEEEeCCCC-EEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeCCEEccCCccccccccC-------CCCEEEEEEE
Q 032678 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ-------KESTLHLVLR 72 (136)
Q Consensus 1 MqI~Vk~~~g~-~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~-------~gstI~l~~r 72 (136)
|+++|+...++ ++.++|++++||.+||++|+.++|+|+++|||+|+|++|+|++||++|||+ ++++||+++|
T Consensus 1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~lr 80 (118)
T 2fnj_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEB
T ss_pred CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEEec
Confidence 78888887776 588999999999999999999999999999999999999999999999999 7999999999
Q ss_pred ecCCcc
Q 032678 73 LRGGII 78 (136)
Q Consensus 73 ~~gG~~ 78 (136)
.||.+
T Consensus 81 -~~g~f 85 (118)
T 2fnj_B 81 -ADDTF 85 (118)
T ss_dssp -SSSCB
T ss_pred -CCCce
Confidence 77754
No 34
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.76 E-value=4.1e-23 Score=131.67 Aligned_cols=75 Identities=33% Similarity=0.588 Sum_probs=73.2
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeCCEEccCCccccccccCCCCEEEEEEEecC
Q 032678 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (136)
Q Consensus 1 MqI~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~g 75 (136)
|+|+||+.+|+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++||++++++|
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~rlrg 75 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPRR 75 (76)
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999886
No 35
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.85 E-value=1.3e-21 Score=129.21 Aligned_cols=72 Identities=22% Similarity=0.446 Sum_probs=68.6
Q ss_pred CEEEEEeCCCCEEEEEec--CCCcHHHHHHHH-hhhhCCCCCCeEEEeCCEEccCCcccccccc-CCCCEEEEEEE
Q 032678 1 MQIFVKTLTGKTITLEVE--SSDTIDNVKAKI-QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLR 72 (136)
Q Consensus 1 MqI~Vk~~~g~~~~i~v~--~~~TV~~LK~~I-~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI-~~gstI~l~~r 72 (136)
|+|+||+++|++++++++ +++||.+||++| ++..|+|+++|||+|+|++|+|+.+|++|+| ++|++|++.++
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~ 77 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIK 77 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcC
Confidence 899999999999988755 999999999999 9999999999999999999999999999999 79999999876
No 36
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.85 E-value=1.7e-21 Score=133.46 Aligned_cols=79 Identities=32% Similarity=0.433 Sum_probs=75.9
Q ss_pred CEEEEEeC---CCCEEEEEecC-CCcHHHHHHHHhhhhCCCCCCeEEEeCCEEccCCccccccccCCCCEEEEEEEecCC
Q 032678 1 MQIFVKTL---TGKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (136)
Q Consensus 1 MqI~Vk~~---~g~~~~i~v~~-~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~gG 76 (136)
|+|+|+++ +|+++.++|++ ++||.+||++|+..+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+++++++||
T Consensus 28 i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~r~~GG 107 (111)
T 1we6_A 28 ATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLRERSG 107 (111)
T ss_dssp EEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECSSCCS
T ss_pred EEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCC
Confidence 68999998 89999999998 999999999999999999999999999999999999999999999999999999999
Q ss_pred ccC
Q 032678 77 IIE 79 (136)
Q Consensus 77 ~~~ 79 (136)
+.+
T Consensus 108 k~h 110 (111)
T 1we6_A 108 PSS 110 (111)
T ss_dssp SCC
T ss_pred CCC
Confidence 754
No 37
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.85 E-value=4.1e-23 Score=149.20 Aligned_cols=99 Identities=76% Similarity=1.000 Sum_probs=11.6
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeCCEEccCCccccccccCCCCEEEEEEEecCCc---
Q 032678 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI--- 77 (136)
Q Consensus 1 MqI~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~gG~--- 77 (136)
|+|+|++++|+++.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+++++++||.
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlrl~GGgKkr 80 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKR 80 (152)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEeeccCCCcCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999993
Q ss_pred ---cCCchHHHHhhcCCCcceeecc
Q 032678 78 ---IEPSLMALARKYNQDKMICRKY 99 (136)
Q Consensus 78 ---~~~s~~~~a~k~n~~k~~cr~~ 99 (136)
....|+...++....|+...+.
T Consensus 81 kKk~~t~Pkk~~~~~~~~~~~~~~~ 105 (152)
T 3u5c_f 81 KXXXXXXXXXXXXXXXXXXXXVLSY 105 (152)
T ss_dssp -CCCCCCCSCCCCCCCCCCCCCCCC
T ss_pred ccccccccccccccccccccceeeE
Confidence 3445555555555555555554
No 38
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.85 E-value=5e-21 Score=134.05 Aligned_cols=86 Identities=29% Similarity=0.329 Sum_probs=69.6
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeCCEEccCCccccccccCCCCEEEEEEEecCCccCC
Q 032678 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEP 80 (136)
Q Consensus 1 MqI~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~gG~~~~ 80 (136)
|+|+||+. |+++.++|++++||.+||++|+.++|+|+++|+|+|+|+.|+|+++|++|||++|++|+|+.+++||...+
T Consensus 33 m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~~gg~~~~ 111 (125)
T 1j8c_A 33 IKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKRDPNSSSV 111 (125)
T ss_dssp EEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC--------
T ss_pred EEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCCCCCCc
Confidence 78999998 99999999999999999999999999999999999999999999999999999999999999999998777
Q ss_pred chHHHHh
Q 032678 81 SLMALAR 87 (136)
Q Consensus 81 s~~~~a~ 87 (136)
+..++|-
T Consensus 112 ~~~~~~~ 118 (125)
T 1j8c_A 112 DKYAAAL 118 (125)
T ss_dssp -------
T ss_pred chhhhhh
Confidence 7666553
No 39
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=4.8e-21 Score=123.13 Aligned_cols=73 Identities=40% Similarity=0.690 Sum_probs=70.7
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeCCEEccCCccccccccCCCCEEEEEEEe
Q 032678 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (136)
Q Consensus 1 MqI~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~ 73 (136)
|+|+|++.+|+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|++++++
T Consensus 8 m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 80 (81)
T 2dzi_A 8 MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKP 80 (81)
T ss_dssp EEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999875
No 40
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.84 E-value=2.5e-21 Score=131.76 Aligned_cols=75 Identities=21% Similarity=0.426 Sum_probs=70.4
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeCCEEccCCccccccccCCCCEEEEEEEecC
Q 032678 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (136)
Q Consensus 1 MqI~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~g 75 (136)
|+|+||+++|+++.++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|||++|++|+++++...
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~~~ 76 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQKK 76 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC--
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcCCC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999987543
No 41
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.84 E-value=1.3e-20 Score=122.37 Aligned_cols=73 Identities=30% Similarity=0.540 Sum_probs=69.7
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHhhh---hCCCCCCeEEEeCCEEccCCccccccccCCCCEEEEEEEe
Q 032678 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (136)
Q Consensus 1 MqI~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~---~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~ 73 (136)
|+|+||+.+|+++.+++++++||.+||++|+++ +|+|+++|+|+|+|+.|+|+.+|++|||++|++||++.+.
T Consensus 6 m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~~ 81 (85)
T 2wyq_A 6 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTK 81 (85)
T ss_dssp EEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC-
T ss_pred EEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEcC
Confidence 789999999999999999999999999999998 8999999999999999999999999999999999998763
No 42
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.84 E-value=1.3e-20 Score=129.80 Aligned_cols=77 Identities=91% Similarity=1.265 Sum_probs=75.0
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeCCEEccCCccccccccCCCCEEEEEEEecCCc
Q 032678 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 77 (136)
Q Consensus 1 MqI~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~gG~ 77 (136)
++|+|++++|+++.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+++.+++||.
T Consensus 10 ~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~~GG~ 86 (114)
T 2kdi_A 10 FQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRLRGGS 86 (114)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECCCSSC
T ss_pred EEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCCc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999995
No 43
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.84 E-value=9.2e-21 Score=132.82 Aligned_cols=78 Identities=26% Similarity=0.425 Sum_probs=72.1
Q ss_pred CEEEEEeCCCCEE-EEEecCCCcHHHHHHHH-----hhhhCCCC--CCeEEEeCCEEccCCccccccccCCC------CE
Q 032678 1 MQIFVKTLTGKTI-TLEVESSDTIDNVKAKI-----QDKEGIPP--DQQRLIFAGKQLEDGRTLADYNIQKE------ST 66 (136)
Q Consensus 1 MqI~Vk~~~g~~~-~i~v~~~~TV~~LK~~I-----~~~~gip~--~~qrLi~~Gk~L~D~~tL~~ygI~~g------st 66 (136)
|+|+||+.+|+++ .+++++++||.+||++| ++++|+|+ ++|||+|+|++|+|++||++|+|++| ++
T Consensus 17 ~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~v~t 96 (126)
T 1se9_A 17 LEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGAVTT 96 (126)
T ss_dssp EEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTCCEE
T ss_pred EEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCCcEE
Confidence 6899999999988 69999999999999999 56778987 89999999999999999999999988 78
Q ss_pred EEEEEEecCCcc
Q 032678 67 LHLVLRLRGGII 78 (136)
Q Consensus 67 I~l~~r~~gG~~ 78 (136)
+||+++++||..
T Consensus 97 mhlVlrl~g~~k 108 (126)
T 1se9_A 97 MHVIIQAPVTEK 108 (126)
T ss_dssp EEEEECCCSSCC
T ss_pred EEEEeccCCccc
Confidence 999999998854
No 44
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.84 E-value=9.2e-21 Score=131.25 Aligned_cols=77 Identities=29% Similarity=0.430 Sum_probs=71.6
Q ss_pred CEEEEEeCCCC-EEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeCCEEccCCccccccccCC-------CCEEEEEEE
Q 032678 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK-------ESTLHLVLR 72 (136)
Q Consensus 1 MqI~Vk~~~g~-~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~-------gstI~l~~r 72 (136)
|.++++...++ ++.+++++++||.+||++|+.+.|+||++|||+|+|++|+|++||++|||++ +++||+++|
T Consensus 1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lvlr 80 (118)
T 4ajy_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEEEC
T ss_pred CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEEEe
Confidence 78888888777 7888999999999999999999999999999999999999999999999999 999999999
Q ss_pred ecCCcc
Q 032678 73 LRGGII 78 (136)
Q Consensus 73 ~~gG~~ 78 (136)
. +|.+
T Consensus 81 ~-~~~f 85 (118)
T 4ajy_B 81 A-DDTF 85 (118)
T ss_dssp C-SSCC
T ss_pred c-CCCc
Confidence 7 5543
No 45
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.84 E-value=5.7e-21 Score=142.31 Aligned_cols=77 Identities=94% Similarity=1.252 Sum_probs=75.6
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeCCEEccCCccccccccCCCCEEEEEEEecCCc
Q 032678 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 77 (136)
Q Consensus 1 MqI~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~gG~ 77 (136)
|+|+||+++|+++.++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|++|++|||+++++||.
T Consensus 106 MqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~LvlrlrGG~ 182 (189)
T 3q3f_A 106 GQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 182 (189)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCCCCCCC
T ss_pred eeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999995
No 46
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.83 E-value=2.6e-20 Score=118.58 Aligned_cols=71 Identities=34% Similarity=0.574 Sum_probs=68.4
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeCCEEccCCccccccccCCCCEEEEEEE
Q 032678 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (136)
Q Consensus 1 MqI~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r 72 (136)
|+|+|++ +|+++.+++++++||++||++|+..+|+|+++|+|+|+|+.|+|+.+|++|||++|++||++.+
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~ 75 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS 75 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEc
Confidence 6899999 8999999999999999999999999999999999999999999999999999999999999865
No 47
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.83 E-value=5.4e-21 Score=127.33 Aligned_cols=76 Identities=28% Similarity=0.357 Sum_probs=73.6
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeCCEEccCCccccccccCCCCEEEEEEEecCCc
Q 032678 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 77 (136)
Q Consensus 1 MqI~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~gG~ 77 (136)
|+|+|++. |+++.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+++|++|||++|++||++++++||.
T Consensus 18 m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~g~ 93 (96)
T 1wx8_A 18 IRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRSHSGP 93 (96)
T ss_dssp EEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCCSSCS
T ss_pred EEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEeCCCCC
Confidence 78999998 99999999999999999999999999999999999999999999999999999999999999999885
No 48
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.83 E-value=1.8e-20 Score=126.63 Aligned_cols=78 Identities=22% Similarity=0.260 Sum_probs=70.5
Q ss_pred EEEEEeCC----CCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeCCEEccCCccccccccCCCCEEEEEEEecCCc
Q 032678 2 QIFVKTLT----GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 77 (136)
Q Consensus 2 qI~Vk~~~----g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~gG~ 77 (136)
.|.|+..+ +++++++|++++||.+||++|++++|+||++|+|+|+|++|+|++||++|+|++|++| ++++++|..
T Consensus 17 ti~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti-~vl~lrg~~ 95 (100)
T 1wju_A 17 TIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKA-MVLELKQSS 95 (100)
T ss_dssp EEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEE-EEECCCCCC
T ss_pred EEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcHHHcCCCCCCEE-EEEEECCCC
Confidence 35666666 7799999999999999999999999999999999999999999999999999999999 778888876
Q ss_pred cCC
Q 032678 78 IEP 80 (136)
Q Consensus 78 ~~~ 80 (136)
.+.
T Consensus 96 ~~~ 98 (100)
T 1wju_A 96 GPS 98 (100)
T ss_dssp CSC
T ss_pred ccc
Confidence 443
No 49
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.83 E-value=1.6e-20 Score=126.59 Aligned_cols=76 Identities=34% Similarity=0.469 Sum_probs=72.6
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeCCEEccCCccccccccCCCCEEEEEEEecCCc
Q 032678 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 77 (136)
Q Consensus 1 MqI~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~gG~ 77 (136)
|+|+|++.+|+ +.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|++++++++|.
T Consensus 23 m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~~~p 98 (100)
T 1yqb_A 23 IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHRA 98 (100)
T ss_dssp EEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCCCSC
T ss_pred EEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcCCCCC
Confidence 78999999886 79999999999999999999999999999999999999999999999999999999999988874
No 50
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.83 E-value=4.4e-21 Score=130.77 Aligned_cols=76 Identities=24% Similarity=0.372 Sum_probs=71.3
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhCCCC---------------CCeEEEeCCEEcc-CCccccccccCCC
Q 032678 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP---------------DQQRLIFAGKQLE-DGRTLADYNIQKE 64 (136)
Q Consensus 1 MqI~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~---------------~~qrLi~~Gk~L~-D~~tL~~ygI~~g 64 (136)
|+|+|++++|++++++|++++||.+||++|++++++|+ ++|+|+|+|+.|. |+++|++|||++|
T Consensus 8 M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI~~g 87 (105)
T 1v2y_A 8 MTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRNR 87 (105)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTCCSS
T ss_pred EEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCCCCC
Confidence 89999999999999999999999999999999999987 4679999999996 6799999999999
Q ss_pred CEEEEEEEecCC
Q 032678 65 STLHLVLRLRGG 76 (136)
Q Consensus 65 stI~l~~r~~gG 76 (136)
++||++.+++|.
T Consensus 88 ~~l~lv~~lr~~ 99 (105)
T 1v2y_A 88 DEVSFIKKLGQK 99 (105)
T ss_dssp EEEEEEECSCSC
T ss_pred CEEEEEehhccC
Confidence 999999998875
No 51
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.83 E-value=1.6e-20 Score=127.67 Aligned_cols=77 Identities=27% Similarity=0.474 Sum_probs=73.4
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeCCEEccCCccccccccCCCCEEEEEEEecCCc
Q 032678 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 77 (136)
Q Consensus 1 MqI~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~gG~ 77 (136)
|+|+||+.+|+++.++|++++||.+||++|+.++|+|+++|+|+|+|+.|+|+++|++|||++|++||++.+...+.
T Consensus 24 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~~~~~~ 100 (106)
T 1ttn_A 24 CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQPVQN 100 (106)
T ss_dssp EEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCCSSCC
T ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999998876553
No 52
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.83 E-value=1.7e-20 Score=126.41 Aligned_cols=73 Identities=21% Similarity=0.423 Sum_probs=68.3
Q ss_pred CEEEEEeCCCCEEEE--EecCCCcHHHHHHHH-hhhhCCCCCCeEEEeCCEEccCCcccccccc-CCCCEEEEEEEe
Q 032678 1 MQIFVKTLTGKTITL--EVESSDTIDNVKAKI-QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLRL 73 (136)
Q Consensus 1 MqI~Vk~~~g~~~~i--~v~~~~TV~~LK~~I-~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI-~~gstI~l~~r~ 73 (136)
|+|+||+++|+++++ ++++++||.+||++| ++..|+|+++|||+|+|+.|+|+.+|++|+| ++|++|+++++.
T Consensus 20 m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmvsk 96 (98)
T 4a20_A 20 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP 96 (98)
T ss_dssp EEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEEeC
Confidence 799999999998777 566999999999999 8889999999999999999999999999999 999999999863
No 53
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.83 E-value=2.5e-20 Score=126.56 Aligned_cols=79 Identities=33% Similarity=0.455 Sum_probs=74.6
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeCCEEccCCccccccccCCCCEEEEEEEecCCccCC
Q 032678 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEP 80 (136)
Q Consensus 1 MqI~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~gG~~~~ 80 (136)
|+|+||+.+|+ +.++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+++|++|||++|++|||+.++++|...+
T Consensus 18 m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~~~~~~ 96 (106)
T 1wx7_A 18 IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHRAMGN 96 (106)
T ss_dssp EEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEECCCCCSCCC
T ss_pred EEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCCCCCCC
Confidence 78999999886 79999999999999999999999999999999999999999999999999999999999999997543
No 54
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.82 E-value=1.5e-20 Score=131.69 Aligned_cols=79 Identities=23% Similarity=0.333 Sum_probs=72.0
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHhh------hhCCC--CCCeEEEeCCEEccCCccccccccCCCC--EEEEE
Q 032678 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD------KEGIP--PDQQRLIFAGKQLEDGRTLADYNIQKES--TLHLV 70 (136)
Q Consensus 1 MqI~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~------~~gip--~~~qrLi~~Gk~L~D~~tL~~ygI~~gs--tI~l~ 70 (136)
|+|+||+++|++++++|++++||.+||++|++ ++|+| +++|||+|+|++|+|++||++|+|++++ ++||+
T Consensus 18 m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~tlhlv 97 (125)
T 2gow_A 18 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHLV 97 (125)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEEEEEE
T ss_pred EEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEEE
Confidence 68999999999999999999999999999998 77884 8999999999999999999999999766 78999
Q ss_pred EEecCCccC
Q 032678 71 LRLRGGIIE 79 (136)
Q Consensus 71 ~r~~gG~~~ 79 (136)
++++++...
T Consensus 98 ~r~~~~~~~ 106 (125)
T 2gow_A 98 ARETLPEPN 106 (125)
T ss_dssp ECSCCSSSS
T ss_pred ecCCCCccc
Confidence 998877543
No 55
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.82 E-value=4.7e-20 Score=126.99 Aligned_cols=79 Identities=28% Similarity=0.538 Sum_probs=73.2
Q ss_pred CEEEEEeC----------CCCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeCCEEccCCccccccccCCCCEEEEE
Q 032678 1 MQIFVKTL----------TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (136)
Q Consensus 1 MqI~Vk~~----------~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~ 70 (136)
++|.|+.. +|+++.++|++++||.+||++|+..+|+|+++|+|+|+|+.|+|+.+|++|+|++|++||++
T Consensus 26 i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i~lv 105 (115)
T 1we7_A 26 VSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVIHLA 105 (115)
T ss_dssp EEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBHHHHTCCSSCEEEEE
T ss_pred EEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCHHHCCCCCCCEEEEE
Confidence 46777775 47899999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCccC
Q 032678 71 LRLRGGIIE 79 (136)
Q Consensus 71 ~r~~gG~~~ 79 (136)
++++||+..
T Consensus 106 ~rl~GGk~~ 114 (115)
T 1we7_A 106 LKERSGPSS 114 (115)
T ss_dssp ECCCSCCSC
T ss_pred EEcCCCCCC
Confidence 999999743
No 56
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.82 E-value=2.6e-20 Score=125.82 Aligned_cols=77 Identities=19% Similarity=0.384 Sum_probs=72.6
Q ss_pred CEEEEEeCCC----CEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeCCEEccCC-ccccccccCCCCEEEEEEEecC
Q 032678 1 MQIFVKTLTG----KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLRG 75 (136)
Q Consensus 1 MqI~Vk~~~g----~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~-~tL~~ygI~~gstI~l~~r~~g 75 (136)
|+|+|++.++ +++.++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+ ++|++|||++|++|+|+.+.+|
T Consensus 8 m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~~~g 87 (102)
T 1v5o_A 8 MLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQKDNV 87 (102)
T ss_dssp EEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBCCCC
T ss_pred EEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEECCCC
Confidence 7899999754 7999999999999999999999999999999999999999987 7999999999999999999999
Q ss_pred Cc
Q 032678 76 GI 77 (136)
Q Consensus 76 G~ 77 (136)
|.
T Consensus 88 g~ 89 (102)
T 1v5o_A 88 GL 89 (102)
T ss_dssp CC
T ss_pred CC
Confidence 85
No 57
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.82 E-value=3.2e-20 Score=135.42 Aligned_cols=76 Identities=96% Similarity=1.322 Sum_probs=69.7
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeCCEEccCCccccccccCCCCEEEEEEEecCC
Q 032678 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (136)
Q Consensus 1 MqI~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~gG 76 (136)
|+|+|++.+|+++.+++++++||.+||++|+.++|+|+++|+|+|+|+.|+|+.+|++|||++|++||++++++||
T Consensus 97 ~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~rlrgG 172 (172)
T 3u30_A 97 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 172 (172)
T ss_dssp EEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC-----
T ss_pred ccceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEEecCCC
Confidence 5799999999999999999999999999999999999999999999999999999999999999999999999997
No 58
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.81 E-value=8.4e-20 Score=133.19 Aligned_cols=76 Identities=96% Similarity=1.322 Sum_probs=74.4
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeCCEEccCCccccccccCCCCEEEEEEEecCC
Q 032678 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (136)
Q Consensus 1 MqI~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~gG 76 (136)
|+|+||+.+|+++.++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|||++|++|+++++++||
T Consensus 21 m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~gg 96 (172)
T 3u30_A 21 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 96 (172)
T ss_dssp EEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccccccCCHhHcCCcccceeeeeeccccc
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999998887
No 59
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.81 E-value=1.2e-19 Score=128.78 Aligned_cols=76 Identities=96% Similarity=1.322 Sum_probs=73.5
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeCCEEccCCccccccccCCCCEEEEEEEecCC
Q 032678 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (136)
Q Consensus 1 MqI~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~gG 76 (136)
|+|+|++.+|+++.+++++++||.+||++|+.++|+|+++|+|+|+|+.|+|+.+|++|||++|++||++++++||
T Consensus 77 ~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 152 (152)
T 3b08_A 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152 (152)
T ss_dssp EEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC-
T ss_pred cceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999997
No 60
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.81 E-value=1.2e-19 Score=122.39 Aligned_cols=74 Identities=32% Similarity=0.446 Sum_probs=70.7
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeCCEEccCCccccccccCCCCEEEEEEEecC
Q 032678 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (136)
Q Consensus 1 MqI~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~g 75 (136)
|+|+|++. |+++.++|++++||.+||++|+..+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+++.+++.
T Consensus 26 m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~~~ 99 (101)
T 2klc_A 26 MKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQN 99 (101)
T ss_dssp EEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECCSS
T ss_pred EEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCC
Confidence 78999998 899999999999999999999999999999999999999999999999999999999999988654
No 61
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.81 E-value=1.8e-19 Score=124.81 Aligned_cols=77 Identities=23% Similarity=0.365 Sum_probs=69.5
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHhh------hhCC--CCCCeEEEeCCEEccCCccccccccCCC--CEEEEE
Q 032678 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD------KEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKE--STLHLV 70 (136)
Q Consensus 1 MqI~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~------~~gi--p~~~qrLi~~Gk~L~D~~tL~~ygI~~g--stI~l~ 70 (136)
|+|+||+++|++++++|++++||.+||++|+. ++++ |+++|||+|.|++|+|+.||++|+|+.+ ++|||+
T Consensus 17 m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~tlhLv 96 (116)
T 1wgh_A 17 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHLV 96 (116)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEEEEEE
T ss_pred EEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEEE
Confidence 78999999999999999999999999999999 6675 6999999999999999999999999766 678888
Q ss_pred EEecCCc
Q 032678 71 LRLRGGI 77 (136)
Q Consensus 71 ~r~~gG~ 77 (136)
+++.+..
T Consensus 97 lr~~~~~ 103 (116)
T 1wgh_A 97 ARETLPE 103 (116)
T ss_dssp ECSSCSS
T ss_pred ccCCCCC
Confidence 8876553
No 62
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.80 E-value=2.9e-19 Score=128.52 Aligned_cols=76 Identities=32% Similarity=0.399 Sum_probs=72.3
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEE-e-CCEEccCCccccccccCCCCEEEEEEE-ecCC
Q 032678 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-F-AGKQLEDGRTLADYNIQKESTLHLVLR-LRGG 76 (136)
Q Consensus 1 MqI~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi-~-~Gk~L~D~~tL~~ygI~~gstI~l~~r-~~gG 76 (136)
|+|+||+++|+++.++|++++||.+||++|++.+|+|+++|+|+ | +|+.|+|+.+|++|||++|++|+++++ ++++
T Consensus 3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~~~~~~ 81 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKSDEP 81 (159)
T ss_dssp CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEECCCCCC
T ss_pred eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEccCCCCc
Confidence 89999999999999999999999999999999999999999999 9 799999999999999999999999998 3443
No 63
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.79 E-value=5.2e-19 Score=125.39 Aligned_cols=76 Identities=96% Similarity=1.322 Sum_probs=73.8
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeCCEEccCCccccccccCCCCEEEEEEEecCC
Q 032678 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (136)
Q Consensus 1 MqI~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~gG 76 (136)
|+|+|++.+|+++.+++++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|||++|++|+++.+..+|
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~~~ 76 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCTTC
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeecccc
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999987776
No 64
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.79 E-value=5.4e-19 Score=120.28 Aligned_cols=72 Identities=24% Similarity=0.253 Sum_probs=67.8
Q ss_pred CEEEEEeCCC--CEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeCCEEccCCcccccccc-CCCCEEEEEEE
Q 032678 1 MQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLR 72 (136)
Q Consensus 1 MqI~Vk~~~g--~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI-~~gstI~l~~r 72 (136)
|+|+|++..+ .+++++|+|++||.+||++|++++|+||++|||+|+|+.++|++||++||| ++|+++||++-
T Consensus 25 l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l~ 99 (105)
T 4dbg_A 25 LWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLL 99 (105)
T ss_dssp EEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEEC
T ss_pred EEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEEE
Confidence 6899999875 689999999999999999999999999999999999999999999999999 69999999874
No 65
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.78 E-value=3.4e-19 Score=120.17 Aligned_cols=70 Identities=24% Similarity=0.394 Sum_probs=64.5
Q ss_pred CEEEEEeCCCC--EEEEEecCCCcHHHHHHHHhhh-hCCC-CCCeEEEeCCEEccCCcccccc--ccCCCCEEEEE
Q 032678 1 MQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDK-EGIP-PDQQRLIFAGKQLEDGRTLADY--NIQKESTLHLV 70 (136)
Q Consensus 1 MqI~Vk~~~g~--~~~i~v~~~~TV~~LK~~I~~~-~gip-~~~qrLi~~Gk~L~D~~tL~~y--gI~~gstI~l~ 70 (136)
|+|+||+++|+ ++++++++++||.+||++|+++ .|+| +++|||+|+|++|+|+.+|++| +|+++++|||+
T Consensus 24 m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihLv 99 (99)
T 2kdb_A 24 VTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLV 99 (99)
T ss_dssp EEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEeC
Confidence 78999999998 6789999999999999999986 5666 4999999999999999999999 99999999984
No 66
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.77 E-value=1.4e-20 Score=139.96 Aligned_cols=73 Identities=29% Similarity=0.385 Sum_probs=1.2
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeCCEEccCCccccccccCCCCEEEEEEEecCCcc
Q 032678 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGII 78 (136)
Q Consensus 1 MqI~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~gG~~ 78 (136)
|+|+|++++|++++++|++++||.+||++|+..+|+|+++|+|+|+|++|+|+.+|+ ++++|||+++++||..
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TLs-----~~STLhLvlRLrGG~~ 73 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVT-----DDVTYYLSLKLLGGKK 73 (189)
T ss_dssp ----------------------------------------------------------------------------CC
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCccc-----CCCEEEEEEecCCCcc
Confidence 899999999999999999999999999999999999999999999999999999999 7999999999999965
No 67
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.77 E-value=1.7e-19 Score=121.87 Aligned_cols=71 Identities=34% Similarity=0.574 Sum_probs=67.3
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeCCEEccCCccccccccCCCCEEEEEEE
Q 032678 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (136)
Q Consensus 1 MqI~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r 72 (136)
|+|+||+ +|+++.++|++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|||++|++|+++.+
T Consensus 29 i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~g~tI~lv~~ 99 (101)
T 3m63_B 29 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS 99 (101)
T ss_dssp CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBTTTTTCCTTEEEEECCC
T ss_pred EEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcHHHCCCCCCCEEEEEeC
Confidence 5688887 8999999999999999999999999999999999999999999999999999999999999854
No 68
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.77 E-value=1.4e-18 Score=115.43 Aligned_cols=73 Identities=26% Similarity=0.386 Sum_probs=68.8
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeCCEEccCC-ccccccccCCCCEEEEEEEecCC
Q 032678 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLRGG 76 (136)
Q Consensus 1 MqI~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~-~tL~~ygI~~gstI~l~~r~~gG 76 (136)
|+|+||+.+|+.+.++|++++||.+||++|+.+. +++|+|+|+|+.|+|+ .+|++|||++|++||++++..+.
T Consensus 8 m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~~~~ 81 (95)
T 1wia_A 8 INVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPPGA 81 (95)
T ss_dssp EEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCCCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECCCCC
Confidence 7899999999999999999999999999999987 8999999999999999 99999999999999999886554
No 69
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.76 E-value=2.6e-18 Score=112.44 Aligned_cols=70 Identities=29% Similarity=0.452 Sum_probs=65.7
Q ss_pred EEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeCCEEccCCccccccccCCCCEEEEEEE
Q 032678 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (136)
Q Consensus 3 I~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r 72 (136)
+++++++|+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+++..
T Consensus 14 ~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s 83 (85)
T 2kd0_A 14 KLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMAS 83 (85)
T ss_dssp EEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECC
T ss_pred EEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEe
Confidence 4567789999999999999999999999999999999999999999999999999999999999998753
No 70
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.76 E-value=1.5e-18 Score=114.69 Aligned_cols=71 Identities=21% Similarity=0.428 Sum_probs=67.5
Q ss_pred CEEEEEeCCCCEEEE-EecCCCcHHHHHHHHhhhhCCCCCCeEEE---eCCEEccCCccccccccCCCCEEEEEEE
Q 032678 1 MQIFVKTLTGKTITL-EVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVLR 72 (136)
Q Consensus 1 MqI~Vk~~~g~~~~i-~v~~~~TV~~LK~~I~~~~gip~~~qrLi---~~Gk~L~D~~tL~~ygI~~gstI~l~~r 72 (136)
|+|+||. .|+++.+ ++++++||.+||++|++++|+|+++|+|+ |+|+.|+|+.+|++|+|++|++|+|+..
T Consensus 8 m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~ 82 (90)
T 1v5t_A 8 LPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGT 82 (90)
T ss_dssp CCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECC
T ss_pred EEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEec
Confidence 7899996 7899999 99999999999999999999999999999 9999999999999999999999999754
No 71
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.75 E-value=2.9e-18 Score=116.64 Aligned_cols=74 Identities=28% Similarity=0.401 Sum_probs=68.5
Q ss_pred CEEEEEeCCC---CEEEEEecC---------CCcHHHHHHHHhhhh--CCCCCC-eEEEeCCEEccCCccccccccCCCC
Q 032678 1 MQIFVKTLTG---KTITLEVES---------SDTIDNVKAKIQDKE--GIPPDQ-QRLIFAGKQLEDGRTLADYNIQKES 65 (136)
Q Consensus 1 MqI~Vk~~~g---~~~~i~v~~---------~~TV~~LK~~I~~~~--gip~~~-qrLi~~Gk~L~D~~tL~~ygI~~gs 65 (136)
|+|+||+.++ +++.+++++ ++||.+||++|+.++ |+|+++ |+|+|+|+.|+|+++|++|||++|+
T Consensus 13 ~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y~i~~g~ 92 (107)
T 1x1m_A 13 WHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQPGS 92 (107)
T ss_dssp CCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTCCTTC
T ss_pred eEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHcCCCCCC
Confidence 7899999999 889999554 499999999999999 999999 9999999999999999999999999
Q ss_pred EEEEEEEec
Q 032678 66 TLHLVLRLR 74 (136)
Q Consensus 66 tI~l~~r~~ 74 (136)
+||++.+..
T Consensus 93 ~i~lv~~~~ 101 (107)
T 1x1m_A 93 TVHVLRKSW 101 (107)
T ss_dssp EEEEEESSC
T ss_pred EEEEEeCCC
Confidence 999998754
No 72
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.74 E-value=2.3e-18 Score=115.23 Aligned_cols=71 Identities=17% Similarity=0.292 Sum_probs=66.4
Q ss_pred CEEEEEeCCCCEE-EEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeCCEEccCCccccccccCCCCEEEEEEEe
Q 032678 1 MQIFVKTLTGKTI-TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (136)
Q Consensus 1 MqI~Vk~~~g~~~-~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~ 73 (136)
|+|+||. .|+++ .+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+ +|++|||++|++|+|+...
T Consensus 8 m~i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~~ 79 (96)
T 1wgg_A 8 YSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGSA 79 (96)
T ss_dssp EEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCCC
T ss_pred EEEEEEE-CCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEecc
Confidence 6899995 68999 6999999999999999999999999999999999999999 9999999999999997553
No 73
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.74 E-value=1e-17 Score=110.66 Aligned_cols=72 Identities=24% Similarity=0.433 Sum_probs=66.4
Q ss_pred CEEEEEeCCCCEEEEEecCC-----CcHHHHHHHHhhhhCCCCCCeEEEeCCEEccC-CccccccccCCCCEEEEEEEe
Q 032678 1 MQIFVKTLTGKTITLEVESS-----DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLADYNIQKESTLHLVLRL 73 (136)
Q Consensus 1 MqI~Vk~~~g~~~~i~v~~~-----~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D-~~tL~~ygI~~gstI~l~~r~ 73 (136)
|+|+|++ .|+.+.++++++ +||.+||++|++.+|+|+++|+|+|+|+.|.| +.+|++|||++|++|||+.+.
T Consensus 8 ~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~~~ 85 (92)
T 1wxv_A 8 LTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGKK 85 (92)
T ss_dssp EEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEESCC
T ss_pred EEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEecC
Confidence 6899997 588999999995 99999999999999999999999999999998 668999999999999998653
No 74
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=2.2e-17 Score=113.96 Aligned_cols=73 Identities=16% Similarity=0.307 Sum_probs=67.7
Q ss_pred EEEEE-eCCCCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeCCEEccCCccccccccCCCCEEEEEEEec
Q 032678 2 QIFVK-TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (136)
Q Consensus 2 qI~Vk-~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~ 74 (136)
.|.|+ ..+|+.++++++++.||.+||++++...++|+++|+|+|+|+.|.|+.||++|||++|.+|||+++..
T Consensus 17 tvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~s~ 90 (118)
T 2daf_A 17 TVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIFST 90 (118)
T ss_dssp EEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEEES
T ss_pred EEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEecC
Confidence 45565 56788999999999999999999999999999999999999999999999999999999999998853
No 75
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=5.1e-18 Score=112.02 Aligned_cols=69 Identities=23% Similarity=0.305 Sum_probs=63.7
Q ss_pred CEEEEEeCCCCEE--EE-EecCCCcHHHHHHHHhh-hhCCCCCCeEEEeC--CEEccCCccccccccCCCCEEEE
Q 032678 1 MQIFVKTLTGKTI--TL-EVESSDTIDNVKAKIQD-KEGIPPDQQRLIFA--GKQLEDGRTLADYNIQKESTLHL 69 (136)
Q Consensus 1 MqI~Vk~~~g~~~--~i-~v~~~~TV~~LK~~I~~-~~gip~~~qrLi~~--Gk~L~D~~tL~~ygI~~gstI~l 69 (136)
|+|+|+++.|+.+ .+ +|+|++||.+||++|++ +.|+||++|||+|. |+.|+|+.+|++|||++|++|++
T Consensus 11 M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 11 YEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp EEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred EEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence 7999999998775 58 99999999999999999 48999999999976 99999999999999999999875
No 76
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=6.3e-18 Score=114.16 Aligned_cols=74 Identities=19% Similarity=0.273 Sum_probs=67.7
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEe--CCEEccCCccccccccCCCCEEEEEEEecC
Q 032678 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (136)
Q Consensus 1 MqI~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~--~Gk~L~D~~tL~~ygI~~gstI~l~~r~~g 75 (136)
|+++++.++|+++.+++++++||++||++|++++||||++|+|++ .|+ |+|+.+|++|+|++|++||+++....
T Consensus 9 m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L~D~~tLs~~~I~~gstL~lvl~~~~ 84 (100)
T 2dzm_A 9 MLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD-VEDSTVLKSLHLPKNNSLYVLTPDLP 84 (100)
T ss_dssp EEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-CCTTSBHHHHCCCSEEEEEECCSSSC
T ss_pred eEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC-CCCcCCHHHcCCCCCCEEEEEecCCC
Confidence 677888899999999999999999999999999999999999996 566 89999999999999999999887443
No 77
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.72 E-value=1.5e-17 Score=131.74 Aligned_cols=74 Identities=96% Similarity=1.299 Sum_probs=69.7
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeCCEEccCCccccccccCCCCEEEEEEEec
Q 032678 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (136)
Q Consensus 1 MqI~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~ 74 (136)
|+|+||+++|+++.++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+++|++|+|++|++|+|++|++
T Consensus 234 MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~LvlRLr 307 (307)
T 3ai5_A 234 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 307 (307)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC---
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEEeCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999998864
No 78
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.72 E-value=3.1e-17 Score=109.76 Aligned_cols=70 Identities=14% Similarity=0.222 Sum_probs=62.4
Q ss_pred CEEEEEeCCCC--EEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeC--CE---Ec-cCCccccccccCCCCEEEEE
Q 032678 1 MQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GK---QL-EDGRTLADYNIQKESTLHLV 70 (136)
Q Consensus 1 MqI~Vk~~~g~--~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~--Gk---~L-~D~~tL~~ygI~~gstI~l~ 70 (136)
++|+|++..++ .+++++++++||++||++|+.++|+||++|||+|. |+ .| +|+++|++|||++|++|+|+
T Consensus 16 v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstihlv 93 (95)
T 2kjr_A 16 IKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHVV 93 (95)
T ss_dssp EEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEEEE
T ss_pred EEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEEEE
Confidence 36788876654 88999999999999999999999999999999997 45 44 89999999999999999986
No 79
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.71 E-value=5.4e-18 Score=113.12 Aligned_cols=70 Identities=20% Similarity=0.357 Sum_probs=64.6
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeCCEEccCCccccccccCCCCEEEEEEE
Q 032678 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (136)
Q Consensus 1 MqI~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r 72 (136)
|+|+|+ .+|+++.+++++++||.+||++|+..+|+|+++|+|+|.|+.|+ +.+|++|+|++|++|||+.+
T Consensus 18 ~~i~Vk-~~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~Ld-d~tL~~~~i~~g~~i~lv~~ 87 (95)
T 1v86_A 18 VDLKII-WNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVPE-DKTLREIKVTSGAKIMVVGS 87 (95)
T ss_dssp EEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCCS-SSBHHHHCCCTTEEEEECCS
T ss_pred EEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeCC-cCcHHHCCCCCCCEEEEEec
Confidence 678998 56899999999999999999999999999999999999999994 45999999999999999754
No 80
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.71 E-value=1.2e-17 Score=109.78 Aligned_cols=71 Identities=17% Similarity=0.278 Sum_probs=62.1
Q ss_pred EEEEEe--CCCCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEe-------CCEEccCCccccccccCCCCEEEEEEE
Q 032678 2 QIFVKT--LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-------AGKQLEDGRTLADYNIQKESTLHLVLR 72 (136)
Q Consensus 2 qI~Vk~--~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~-------~Gk~L~D~~tL~~ygI~~gstI~l~~r 72 (136)
+|.|.. .+.+.+++++++++||++||++|+.++|+||++|||+| .|+.|+|+++|++|||++|++|||+-.
T Consensus 4 ~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlvd~ 83 (86)
T 4b6w_A 4 KVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVVDL 83 (86)
T ss_dssp EEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEEEC
T ss_pred EEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEEeC
Confidence 345543 24567889999999999999999999999999999996 478899999999999999999999853
No 81
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.70 E-value=5.3e-17 Score=108.42 Aligned_cols=78 Identities=17% Similarity=0.395 Sum_probs=75.3
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeCCEEccCCccccccccCCCCEEEEEEEecCCcc
Q 032678 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGII 78 (136)
Q Consensus 1 MqI~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~gG~~ 78 (136)
|+|+|++.+|+.+.++|.+++++..|++.++++.|+|+++|||+|+|+.|.++.|+++|++++|++|+++++++||..
T Consensus 8 i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~~~GG~~ 85 (94)
T 2io1_B 8 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGVP 85 (94)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCEESCC
T ss_pred EEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCCc
Confidence 689999999999999999999999999999999999999999999999999999999999999999999999999953
No 82
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.70 E-value=2.6e-17 Score=133.32 Aligned_cols=78 Identities=31% Similarity=0.540 Sum_probs=73.1
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHhh---hhCCCCCCeEEEeCCEEccCCccccccccCCCCEE-EEEEEecCC
Q 032678 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL-HLVLRLRGG 76 (136)
Q Consensus 1 MqI~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~---~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI-~l~~r~~gG 76 (136)
|+|+||+++|+++.++|++++||.+||++|+. +.|+|+++|||+|+|+.|+|+++|++|||++|++| +++.+.++|
T Consensus 8 M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~k~~~~ 87 (368)
T 1oqy_A 8 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTKAG 87 (368)
T ss_dssp CCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEECCCSS
T ss_pred EEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEecCCCC
Confidence 89999999999999999999999999999999 67899999999999999999999999999999998 778888877
Q ss_pred cc
Q 032678 77 II 78 (136)
Q Consensus 77 ~~ 78 (136)
..
T Consensus 88 ~~ 89 (368)
T 1oqy_A 88 QG 89 (368)
T ss_dssp SC
T ss_pred CC
Confidence 53
No 83
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.68 E-value=9.1e-17 Score=107.88 Aligned_cols=70 Identities=16% Similarity=0.203 Sum_probs=61.7
Q ss_pred EEEEEeCCC--CEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeCCE---E----ccCCccccccccCCCCEEEEEE
Q 032678 2 QIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK---Q----LEDGRTLADYNIQKESTLHLVL 71 (136)
Q Consensus 2 qI~Vk~~~g--~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk---~----L~D~~tL~~ygI~~gstI~l~~ 71 (136)
.|.|++... +.+++++++++||++||++|+.++|+||++|||+|.|+ . ++|+++|++|+|++|++||++-
T Consensus 16 ~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihlvd 94 (97)
T 2kj6_A 16 HLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHIID 94 (97)
T ss_dssp EEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEEEE
T ss_pred EEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEEEe
Confidence 567776544 47899999999999999999999999999999999883 3 4889999999999999999863
No 84
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.66 E-value=6.8e-17 Score=109.97 Aligned_cols=71 Identities=21% Similarity=0.276 Sum_probs=65.6
Q ss_pred CEEEEEeCCCCEEEEEec-CCCcHHHHHHHHhhhhCCCCCCeEEEeCCE-----------E----ccCCccccccccCCC
Q 032678 1 MQIFVKTLTGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAGK-----------Q----LEDGRTLADYNIQKE 64 (136)
Q Consensus 1 MqI~Vk~~~g~~~~i~v~-~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk-----------~----L~D~~tL~~ygI~~g 64 (136)
|+|+||+.+|+. .++|+ +++||.+||++|++++|+|+++|+|++.|+ . ++|+++|++|||++|
T Consensus 8 M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~G 86 (107)
T 1wf9_A 8 TMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHG 86 (107)
T ss_dssp EEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTT
T ss_pred EEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCCC
Confidence 789999999976 78999 999999999999999999999999999888 4 578999999999999
Q ss_pred CEEEEEEE
Q 032678 65 STLHLVLR 72 (136)
Q Consensus 65 stI~l~~r 72 (136)
++|||+..
T Consensus 87 ~~L~l~~~ 94 (107)
T 1wf9_A 87 SMVYLAYE 94 (107)
T ss_dssp CEEECCCS
T ss_pred CEEEEEeC
Confidence 99998765
No 85
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.66 E-value=6.4e-16 Score=102.61 Aligned_cols=77 Identities=17% Similarity=0.411 Sum_probs=74.5
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeCCEEccCCccccccccCCCCEEEEEEEecCCc
Q 032678 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 77 (136)
Q Consensus 1 MqI~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~gG~ 77 (136)
|+|.|++.+|+.+.+.|.+++++..|++.++++.|+|++++||+|+|+.|.++.|.+++++++|++|+++++++||.
T Consensus 6 i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~gg~ 82 (91)
T 2io0_B 6 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 82 (91)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCCCCC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999984
No 86
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.64 E-value=3.6e-16 Score=104.11 Aligned_cols=71 Identities=20% Similarity=0.279 Sum_probs=62.1
Q ss_pred CEEEEEeCCCC-EEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeCC---EE----ccCCccccccccCCCCEEEEEE
Q 032678 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---KQ----LEDGRTLADYNIQKESTLHLVL 71 (136)
Q Consensus 1 MqI~Vk~~~g~-~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~G---k~----L~D~~tL~~ygI~~gstI~l~~ 71 (136)
+.|+|++.... .+++++++++||++||++|+.++|+|+++|||+|.| +. ++|+++|++|||++|++||++-
T Consensus 8 v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~d 86 (95)
T 1v6e_A 8 VMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVID 86 (95)
T ss_dssp EEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEBC
T ss_pred EEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEEE
Confidence 35778876543 688999999999999999999999999999999986 43 5899999999999999999863
No 87
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.63 E-value=1.5e-15 Score=101.09 Aligned_cols=76 Identities=17% Similarity=0.403 Sum_probs=71.0
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeCCEEccCCccccccccCCCCEEEEEEEecCC
Q 032678 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (136)
Q Consensus 1 MqI~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~gG 76 (136)
|+|+|++.+|+.+.+.|.+++++..|++.++++.|++++++||+|+|+.|.++.|.++|++++|++|+++++++||
T Consensus 18 i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG 93 (93)
T 2d07_B 18 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 93 (93)
T ss_dssp EEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC---
T ss_pred EEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEeeccCC
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999999987
No 88
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.62 E-value=1.4e-15 Score=105.64 Aligned_cols=72 Identities=14% Similarity=0.248 Sum_probs=62.9
Q ss_pred CEEEEEeCCCC-EEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeCC---E---E-ccCCccccccccCCCCEEEEEEE
Q 032678 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---K---Q-LEDGRTLADYNIQKESTLHLVLR 72 (136)
Q Consensus 1 MqI~Vk~~~g~-~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~G---k---~-L~D~~tL~~ygI~~gstI~l~~r 72 (136)
|.|+|++..+. .+++++++++||++||++|+.++|+||++|||+|.| + . ++|+++|++|||++|++|||+..
T Consensus 7 v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvvd~ 86 (122)
T 1t0y_A 7 YDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAVDV 86 (122)
T ss_dssp EEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEEEC
T ss_pred EEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEEeC
Confidence 36778876553 688999999999999999999999999999999987 3 2 47899999999999999999863
No 89
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.60 E-value=7.6e-16 Score=100.68 Aligned_cols=70 Identities=24% Similarity=0.358 Sum_probs=63.0
Q ss_pred CEEEEEeCCCCEEEEE-ecCCCcHHHHHHHHhhhhCCCCCCeEEEeC--CEEcc---CCccccccccCCCCEEEEEE
Q 032678 1 MQIFVKTLTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GKQLE---DGRTLADYNIQKESTLHLVL 71 (136)
Q Consensus 1 MqI~Vk~~~g~~~~i~-v~~~~TV~~LK~~I~~~~gip~~~qrLi~~--Gk~L~---D~~tL~~ygI~~gstI~l~~ 71 (136)
|+|+||+.+|+. .++ +++++||++||+.|++++|+|+++|+|+|+ ++.|+ |+.+|++|||++|++|++.-
T Consensus 1 m~i~vr~~~G~~-~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~ 76 (86)
T 2kzr_A 1 WRVRCKAKGGTH-LLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEE 76 (86)
T ss_dssp CCEEEEETTEEE-EECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCC
T ss_pred CEEEEEcCCCCE-EeeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEe
Confidence 899999999965 477 999999999999999999999999999987 47774 68899999999999998864
No 90
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.59 E-value=2.9e-15 Score=101.74 Aligned_cols=78 Identities=15% Similarity=0.348 Sum_probs=75.0
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeCCEEccCCccccccccCCCCEEEEEEEecCCcc
Q 032678 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGII 78 (136)
Q Consensus 1 MqI~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~gG~~ 78 (136)
|+|+|++.+|+.+.+.|.+++++..|++.++++.|++++++||+|+|+.|.++.|.++|++++|++|++++++.||..
T Consensus 25 I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG~~ 102 (104)
T 1wz0_A 25 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTSGPS 102 (104)
T ss_dssp EEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCCCCCCSS
T ss_pred EEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCCC
Confidence 579999999999999999999999999999999999999999999999999999999999999999999999999953
No 91
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.58 E-value=7.6e-15 Score=99.97 Aligned_cols=75 Identities=13% Similarity=0.339 Sum_probs=70.2
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeCCEEccCCccccccccCCCCEEEEEEEecCC
Q 032678 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (136)
Q Consensus 1 MqI~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~gG 76 (136)
|+|.|++ +|+...+.+.+++++..|++.++++.|++++++||+|+|+.|.++.|.++|++++|++|+++++++||
T Consensus 32 I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~q~GG 106 (106)
T 2eke_C 32 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 106 (106)
T ss_dssp EEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC---
T ss_pred EEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEeecccC
Confidence 6789999 99999999999999999999999999999999999999999999999999999999999999999987
No 92
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.58 E-value=1.1e-14 Score=92.37 Aligned_cols=70 Identities=16% Similarity=0.384 Sum_probs=67.9
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeCCEEccCCccccccccCCCCEEEEE
Q 032678 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (136)
Q Consensus 1 MqI~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~ 70 (136)
|+|.|++.+|+.+.+.+.++++++.|++.++++.|+|+++++++|+|+.|.++.|.+++++++|++|++.
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 71 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF 71 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence 6899999999999999999999999999999999999999999999999999999999999999999986
No 93
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.56 E-value=5.2e-15 Score=101.37 Aligned_cols=77 Identities=16% Similarity=0.428 Sum_probs=73.9
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeCCEEccCCccccccccCCCCEEEEEEEecCCc
Q 032678 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 77 (136)
Q Consensus 1 MqI~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~gG~ 77 (136)
|+|+|++.+|+.+.+.|.+++++..|++.++++.|+++++|||+|+|+.|.++.|.++|++++|++|++++.+.||-
T Consensus 27 I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~q~Gg~ 103 (110)
T 2k8h_A 27 VAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQTGGL 103 (110)
T ss_dssp EEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECCCCCC-
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEcccCcc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999984
No 94
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.55 E-value=5.2e-15 Score=117.87 Aligned_cols=72 Identities=22% Similarity=0.457 Sum_probs=65.4
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEE---eCCEEccCCccccccccCCCCEEEEEEEe
Q 032678 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (136)
Q Consensus 1 MqI~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi---~~Gk~L~D~~tL~~ygI~~gstI~l~~r~ 73 (136)
|+|+|| .+|+++++++++++||++||++|++.+|+||++|+|+ |+|++|+|+.+|++|||++|++|+|+...
T Consensus 6 i~i~Vk-~~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs~ 80 (320)
T 3shq_A 6 VVVIVK-WSGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGST 80 (320)
T ss_dssp EEEEEE-ETTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECCC
T ss_pred EEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEccc
Confidence 578898 4799999999999999999999999999999999999 89999999999999999999999998553
No 95
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.52 E-value=6.8e-14 Score=90.32 Aligned_cols=70 Identities=10% Similarity=0.274 Sum_probs=67.3
Q ss_pred CEEEEEeCCCC-EEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeCCEEccCCccccccccCCCCEEEEE
Q 032678 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (136)
Q Consensus 1 MqI~Vk~~~g~-~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~ 70 (136)
|+|.|++.+|+ .+.+.+.+++++..|++.++++.|++++++||+|+|+.|.++.|.+++++++|++|++.
T Consensus 8 i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 8 LRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp EEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred EEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 68999999996 89999999999999999999999999999999999999999999999999999999985
No 96
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.43 E-value=6e-13 Score=88.61 Aligned_cols=71 Identities=17% Similarity=0.253 Sum_probs=61.1
Q ss_pred EEEEEe---CCCCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeCC------E-Ec-cCCccccccccCCCCEEEEE
Q 032678 2 QIFVKT---LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG------K-QL-EDGRTLADYNIQKESTLHLV 70 (136)
Q Consensus 2 qI~Vk~---~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~G------k-~L-~D~~tL~~ygI~~gstI~l~ 70 (136)
.|+|++ .+|+.++.++++++||++||.+|+..+|+|+..|+|.|.+ . .| +|.++|++|||++|++|||.
T Consensus 11 ~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I~V~ 90 (97)
T 1wjn_A 11 TLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLVR 90 (97)
T ss_dssp EEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEEEE
T ss_pred EEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEEEEE
Confidence 566765 4678899999999999999999999999999999999873 2 25 57889999999999999987
Q ss_pred EE
Q 032678 71 LR 72 (136)
Q Consensus 71 ~r 72 (136)
..
T Consensus 91 d~ 92 (97)
T 1wjn_A 91 WS 92 (97)
T ss_dssp CC
T ss_pred ec
Confidence 53
No 97
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=99.29 E-value=2.4e-11 Score=83.67 Aligned_cols=75 Identities=17% Similarity=0.416 Sum_probs=70.5
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeCCEEccCCccccccccCCCCEEEEEEEecC
Q 032678 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (136)
Q Consensus 1 MqI~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~g 75 (136)
|+|.|++.+|+...+.+.+++++..|+...+++.|++++.+|++|+|+.|.++.|.+++++++|++|++.....|
T Consensus 41 I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~~Q~G 115 (115)
T 3kyd_D 41 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQCG 115 (115)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCCC
T ss_pred EEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEeeccC
Confidence 478899999999999999999999999999999999999999999999999999999999999999999887543
No 98
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=99.24 E-value=4e-11 Score=89.76 Aligned_cols=76 Identities=13% Similarity=0.298 Sum_probs=72.1
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeCCEEccCCccccccccCCCCEEEEEEEecCCc
Q 032678 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 77 (136)
Q Consensus 1 MqI~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~gG~ 77 (136)
++|.|+ .+|+...+.+.+++++..|+...+++.|++++++|++|+|+.|.++.|.+++++++|++|+++..+.||.
T Consensus 30 I~LkV~-~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~q~gg~ 105 (200)
T 3pge_A 30 INLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGG 105 (200)
T ss_dssp EEEEEE-CSSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCSCCC
T ss_pred EEEEEe-cCCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCcCc
Confidence 467887 4899999999999999999999999999999999999999999999999999999999999999999985
No 99
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=99.23 E-value=1.1e-12 Score=78.67 Aligned_cols=34 Identities=15% Similarity=0.172 Sum_probs=32.5
Q ss_pred ccCCchHHHHhhcCCCcceeeccccccCCcceeee
Q 032678 77 IIEPSLMALARKYNQDKMICRKYAHVSLFLFFSFI 111 (136)
Q Consensus 77 ~~~~s~~~~a~k~n~~k~~cr~~~ya~~~~~a~~~ 111 (136)
.+++++.++|++++.+++|||+| |||+|++|+||
T Consensus 3 i~e~~~~~lA~k~~~~k~ICrkC-~ARnp~~A~~C 36 (56)
T 2ayj_A 3 LTDPAKLQIVQQRVFLKKVCRKC-GALNPIRATKC 36 (56)
T ss_dssp SCCSCCSSTTTTCSCCCEEETTT-CCEECTTCSSC
T ss_pred ccchhHHHHHHHHHhchhhhccc-cCcCCcccccc
Confidence 36899999999999999999999 99999999999
No 100
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=99.16 E-value=5.7e-11 Score=88.25 Aligned_cols=76 Identities=12% Similarity=0.309 Sum_probs=72.2
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeCCEEccCCccccccccCCCCEEEEEEEecCCc
Q 032678 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 77 (136)
Q Consensus 1 MqI~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~gG~ 77 (136)
|+|.|+ .+|+.+.+.|.+++++..|++..+++.|++++.++++|+|+.|.++.|.+++++++|++|++++.+.||.
T Consensus 58 InLKVk-~dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~leQ~GG~ 133 (207)
T 3tix_A 58 INLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHREQIGGL 133 (207)
T ss_dssp EEEEEE-CSSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEECCCCCTTG
T ss_pred EEEEEe-cCCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEEEeccCCC
Confidence 467786 4899999999999999999999999999999999999999999999999999999999999999999996
No 101
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=99.04 E-value=2.2e-11 Score=91.61 Aligned_cols=85 Identities=14% Similarity=0.330 Sum_probs=5.8
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeCCEEccCCccccccccCCCCEEEEEEEecCCccCC
Q 032678 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEP 80 (136)
Q Consensus 1 MqI~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~gG~~~~ 80 (136)
|+|.| +.+|+...+.+.+++++..|++..+++.|++++.+|++|+|+.+.++.|.+++++++|++|+++..+.||..-.
T Consensus 22 InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~leQ~GG~~~~ 100 (227)
T 3v7o_A 22 INLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGLTLA 100 (227)
T ss_dssp ---------------------------------------------------------------------------CCCHH
T ss_pred EEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEecccCCchHh
Confidence 56788 77899999999999999999999999999999999999999999999999999999999999999999996444
Q ss_pred chHHHH
Q 032678 81 SLMALA 86 (136)
Q Consensus 81 s~~~~a 86 (136)
.+-..|
T Consensus 101 ~l~~~a 106 (227)
T 3v7o_A 101 VLLQIA 106 (227)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444444
No 102
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.96 E-value=3e-10 Score=73.35 Aligned_cols=69 Identities=14% Similarity=0.229 Sum_probs=58.5
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeCCEE---c--cCCccccccccCCCCEEEEE
Q 032678 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ---L--EDGRTLADYNIQKESTLHLV 70 (136)
Q Consensus 1 MqI~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~---L--~D~~tL~~ygI~~gstI~l~ 70 (136)
|.|.|++.+| ++.+++++++|+.+|+++|++.++++++.|.+.++-.+ | .++.+|+++||++|++|++.
T Consensus 5 m~lRvrs~~G-~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 5 IIIRVQSPDG-VKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCEEECSSE-EEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred EEEEEECCCC-CEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 6688999887 67789999999999999999999999998888655443 3 36789999999999999874
No 103
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=98.89 E-value=1.7e-08 Score=64.60 Aligned_cols=70 Identities=16% Similarity=0.316 Sum_probs=64.3
Q ss_pred EEEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhCCCCC-CeEEEeCCEEccCCccccccccCCCCEEEEEE
Q 032678 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (136)
Q Consensus 2 qI~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~-~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~ 71 (136)
.+.+++.....+.+++.++.+|.+|-.....+.|||++ ..+|+|.|..|+.+.++.+|++.+|+.|.+++
T Consensus 11 ~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL 81 (82)
T 3goe_A 11 TLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVL 81 (82)
T ss_dssp EEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC
T ss_pred HHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCCcCCceeeeee
Confidence 35567777778999999999999999999999999999 99999999999999999999999999999875
No 104
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=98.73 E-value=7e-08 Score=64.40 Aligned_cols=70 Identities=13% Similarity=0.295 Sum_probs=65.0
Q ss_pred CEEEEEeCCCC-EEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeCCEEccCCccccccccCCCCEEEEE
Q 032678 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (136)
Q Consensus 1 MqI~Vk~~~g~-~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~ 70 (136)
+.|.|+..+|+ .+.+.+.+++++..|....+++.|++++..+++|+|..|.++.|.+++++++|++|.+.
T Consensus 26 I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 26 LQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVW 96 (97)
T ss_dssp EEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred EEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 36788888885 88999999999999999999999999999999999999999999999999999999874
No 105
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=98.70 E-value=4.7e-08 Score=73.29 Aligned_cols=75 Identities=13% Similarity=0.320 Sum_probs=70.6
Q ss_pred EEEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeCCEEccCCccccccccCCCCEEEEEEEecCCc
Q 032678 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 77 (136)
Q Consensus 2 qI~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~gG~ 77 (136)
.|.|++ +|+...+.+..++++..|++..+++.|+++++++++|.|+.+.++.|-.++.++++++|.+..++.||.
T Consensus 23 ~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~eq~Gg~ 97 (209)
T 3uf8_A 23 NLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGS 97 (209)
T ss_dssp EEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECSCTTCC
T ss_pred EEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHhhhcccccchhhccccccc
Confidence 577776 778889999999999999999999999999999999999999999999999999999999999999985
No 106
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=98.64 E-value=3.4e-09 Score=85.39 Aligned_cols=76 Identities=13% Similarity=0.346 Sum_probs=0.4
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeCCEEccCCccccccccCCCCEEEEEEEecCCc
Q 032678 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 77 (136)
Q Consensus 1 MqI~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~gG~ 77 (136)
++|.|++ +|+...+.+.+++++..|++..+++.|++++.++++|+|+.+.++.|.+++++++|++|++..++.||-
T Consensus 22 I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~Q~g~~ 97 (360)
T 3ix6_A 22 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGM 97 (360)
T ss_dssp ----------------------------------------------------------------------------C
T ss_pred EEEEEec-CCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCCCChHHcCCCccchhhhhhccCchH
Confidence 3577776 678888999999999999999999999999999999999999999999999999999999999999994
No 107
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=98.58 E-value=2.9e-07 Score=61.04 Aligned_cols=67 Identities=21% Similarity=0.313 Sum_probs=50.2
Q ss_pred EEEeC-CCCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeCCEEcc--CCcccccccc-CCCCEEEEE
Q 032678 4 FVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE--DGRTLADYNI-QKESTLHLV 70 (136)
Q Consensus 4 ~Vk~~-~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~--D~~tL~~ygI-~~gstI~l~ 70 (136)
+|=++ .+....+.+.+++|+..+|++|++++|||+++|+|+|.|+.+. .+..-..|.- ....-|.+.
T Consensus 16 HVf~~~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~l~p~~~a~~~p~Tt~~~Pl~L~ 86 (94)
T 4efo_A 16 HVFSLQQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFVV 86 (94)
T ss_dssp EEEETTTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECCCTTCBGGGSCCCBTTBCEEEE
T ss_pred EEEEcccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCCCCccccCCCCCCCCCEEEE
Confidence 34334 4677889999999999999999999999999999999998654 4555555543 233445444
No 108
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=98.43 E-value=2.6e-08 Score=80.57 Aligned_cols=75 Identities=12% Similarity=0.308 Sum_probs=0.0
Q ss_pred EEEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeCCEEccCCccccccccCCCCEEEEEEEecCCc
Q 032678 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 77 (136)
Q Consensus 2 qI~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~gG~ 77 (136)
.|.|+. +|+...+.+.+++++..|++..+++.|+++.+++++|+|+.+.++.|.+++++++|++|+++..+.||.
T Consensus 32 ~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~q~gg~ 106 (389)
T 4da1_A 32 NLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQIGGE 106 (389)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred EEEEec-CCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeecccccc
Confidence 466666 677888999999999999999999999999999999999999999999999999999999999999995
No 109
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=98.39 E-value=2e-06 Score=56.99 Aligned_cols=70 Identities=14% Similarity=0.309 Sum_probs=65.1
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeCCEEccCCccccccccCCCCEEEEEE
Q 032678 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (136)
Q Consensus 1 MqI~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~ 71 (136)
+.|.|+. +|....+.+..++....|.+..+++.|++++..|++|.|..+.++.|-+++++++|++|.+++
T Consensus 22 IniKV~~-~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~ 91 (95)
T 2l76_A 22 FPLKIRC-RADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKLGVADIIDCVV 91 (95)
T ss_dssp EEEEEEC-SSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEE
T ss_pred EEEEEEc-CCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEE
Confidence 3577874 788999999999999999999999999999999999999999999999999999999999875
No 110
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=98.35 E-value=1.9e-06 Score=56.53 Aligned_cols=72 Identities=18% Similarity=0.198 Sum_probs=67.6
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeCCEEccCCccccccccCCCCEEEEEEE
Q 032678 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (136)
Q Consensus 1 MqI~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r 72 (136)
|.|+|-..+|+...+.|.|++++.++-++..+++|+++++-.|.|+++.|+-+.+++--|+.+|+++.++..
T Consensus 10 m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~ 81 (90)
T 2al3_A 10 SAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPV 81 (90)
T ss_dssp CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECS
T ss_pred cEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEecCCCCCCEEEEEEc
Confidence 578899999999999999999999999999999999999999999999999899999999999999999754
No 111
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=98.30 E-value=1.3e-06 Score=60.99 Aligned_cols=69 Identities=28% Similarity=0.393 Sum_probs=56.8
Q ss_pred EEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhCCCCC-------------------------------------CeEEEe
Q 032678 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-------------------------------------QQRLIF 45 (136)
Q Consensus 3 I~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~-------------------------------------~qrLi~ 45 (136)
+.|+.++|+..++.|+.+.||.+++..|..+.||+.. .|+|-.
T Consensus 14 LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~~ 93 (128)
T 2kc2_A 14 LKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLHT 93 (128)
T ss_dssp EEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCCC
T ss_pred EEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhcc
Confidence 7899999999999999999999999999999999754 233322
Q ss_pred --CCEEccCCccccccccCCCCEEEEEE
Q 032678 46 --AGKQLEDGRTLADYNIQKESTLHLVL 71 (136)
Q Consensus 46 --~Gk~L~D~~tL~~ygI~~gstI~l~~ 71 (136)
.+.-|++++||.++||.++++|-+-.
T Consensus 94 dd~~~WLD~srtL~EQGI~e~~tllLRr 121 (128)
T 2kc2_A 94 DDELNWLDHGRTLREQGVEEHETLLLRR 121 (128)
T ss_dssp SSSEEEECSSSCHHHHTCCTTSEEEEEE
T ss_pred cCCCCcccCCCcHHHcCCCCCCEEEEEE
Confidence 12457789999999999999976643
No 112
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=98.15 E-value=7.8e-06 Score=52.68 Aligned_cols=68 Identities=15% Similarity=0.224 Sum_probs=57.9
Q ss_pred EEEEEe--CCCCEEEEEecCCCcHHHHHHHHhhhhCCCCC-----CeEEEeCCEEccCCccccccccCCCCEEEE
Q 032678 2 QIFVKT--LTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-----QQRLIFAGKQLEDGRTLADYNIQKESTLHL 69 (136)
Q Consensus 2 qI~Vk~--~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~-----~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l 69 (136)
+|++.. ..|+++.++++...|+..|++.+.+..+++.. ..|+.-++..|.++..|++|+|.+|+.+.+
T Consensus 6 ~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 6 DITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp EEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred EEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence 456653 47899999999999999999999999887542 346777889999999999999999999875
No 113
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=98.00 E-value=5.4e-05 Score=48.54 Aligned_cols=69 Identities=19% Similarity=0.358 Sum_probs=58.6
Q ss_pred EEEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEE--eCCEEcc---CCccccccccCCCCEEEEEE
Q 032678 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHLVL 71 (136)
Q Consensus 2 qI~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi--~~Gk~L~---D~~tL~~ygI~~gstI~l~~ 71 (136)
+|.||..+|+.+.-.+..++||.+|.+-|.. .+.++....|+ |-.+.+. .++||.+.|+.+.++|.|-.
T Consensus 9 ~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve~ 82 (84)
T 3qx1_A 9 KLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLEA 82 (84)
T ss_dssp EEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEEE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEEe
Confidence 5789999999988899999999999999988 56778888888 5567773 47899999999999988753
No 114
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=97.66 E-value=0.00037 Score=46.90 Aligned_cols=70 Identities=17% Similarity=0.276 Sum_probs=59.3
Q ss_pred EEEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEE--eCCEEcc--C-CccccccccCCCCEEEEEE
Q 032678 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE--D-GRTLADYNIQKESTLHLVL 71 (136)
Q Consensus 2 qI~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi--~~Gk~L~--D-~~tL~~ygI~~gstI~l~~ 71 (136)
+|.||.++|+.+.-.+..++||.+|.+-|....+.+.....|+ |-.+.+. | ++||.+.|+.+.++|++..
T Consensus 15 ~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~ 89 (109)
T 2dzk_A 15 RIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLP 89 (109)
T ss_dssp EEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEEC
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEE
Confidence 5889999999999999999999999999999877776777776 5567775 3 6799999999988887654
No 115
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=97.51 E-value=0.00042 Score=47.76 Aligned_cols=69 Identities=20% Similarity=0.354 Sum_probs=58.5
Q ss_pred EEEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEE--eCCEEc--cC-CccccccccCCCCEEEEEE
Q 032678 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL--ED-GRTLADYNIQKESTLHLVL 71 (136)
Q Consensus 2 qI~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi--~~Gk~L--~D-~~tL~~ygI~~gstI~l~~ 71 (136)
.|.||.++|+.+.-.+..++||.+|.+-|... +.++....|+ |-.+.| .| ++||.+.|+.+.++|+|..
T Consensus 45 ~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~~ 118 (124)
T 1wj4_A 45 QLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE 118 (124)
T ss_dssp EEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEEE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEEE
Confidence 58899999999999999999999999999887 7777788887 567778 33 7899999999988887653
No 116
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=97.08 E-value=0.0048 Score=41.27 Aligned_cols=70 Identities=19% Similarity=0.252 Sum_probs=57.4
Q ss_pred EEEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEE--eCCEEcc--CCccccccccCCCCEEEEEEE
Q 032678 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE--DGRTLADYNIQKESTLHLVLR 72 (136)
Q Consensus 2 qI~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi--~~Gk~L~--D~~tL~~ygI~~gstI~l~~r 72 (136)
+|.||..+|+.+.-++..++||.+|.+-|... +..+....|+ |-.+.|. .++||.+.|+.+.++|.|...
T Consensus 25 ~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~~ 98 (109)
T 2cr5_A 25 TVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEEK 98 (109)
T ss_dssp EEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEEC
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEeC
Confidence 58899999999888999999999999999865 5556677776 5567775 478999999999988877543
No 117
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=97.02 E-value=0.0022 Score=44.19 Aligned_cols=66 Identities=21% Similarity=0.370 Sum_probs=53.6
Q ss_pred EEEEEeCCCCEEEEEecCCCcHHHHHHHHhhhh-CCCCCCeEEE--eCCEEccC-CccccccccCCCCEE
Q 032678 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE-GIPPDQQRLI--FAGKQLED-GRTLADYNIQKESTL 67 (136)
Q Consensus 2 qI~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~-gip~~~qrLi--~~Gk~L~D-~~tL~~ygI~~gstI 67 (136)
.|.||..+|+.+.-.+..++||.+|.+-|.... +.+.....|+ |-.+.++| +.||.+.|+.+...|
T Consensus 54 ~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psavl 123 (127)
T 1s3s_G 54 NIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIV 123 (127)
T ss_dssp CEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEEE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceEE
Confidence 578999999999999999999999999998863 3445667776 56788875 689999999875443
No 118
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=96.90 E-value=0.015 Score=35.66 Aligned_cols=66 Identities=21% Similarity=0.270 Sum_probs=49.2
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeCCEEccCCccccccccCCCCEEEEEEEecCC
Q 032678 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (136)
Q Consensus 1 MqI~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~gG 76 (136)
|+|+|.... ....++++...|+.+|.+.+ +++++...+..+|+.+..+. -+++|+.|.++.-..||
T Consensus 5 m~i~vNg~~-~~~~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~~-----~L~~gD~V~ii~~V~GG 70 (70)
T 1ryj_A 5 MKFTVITDD-GKKILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDEE-----EIFDGDIIEVIRVIYGG 70 (70)
T ss_dssp EEEEEEETT-EEEEEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTTS-----BCCTTCEEEEEECTTCC
T ss_pred EEEEEeCcc-CceeEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCcc-----cCCCCCEEEEEeccccC
Confidence 567776443 23466788889999999877 46677777889999887665 46779999988766665
No 119
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=96.82 E-value=0.0085 Score=45.11 Aligned_cols=65 Identities=20% Similarity=0.302 Sum_probs=55.5
Q ss_pred EEEEecCCCcHHHHHHHHhhhhCCCCC-CeEEEe-C----CEEccC-CccccccccCCCCEEEEEEEecCCc
Q 032678 13 ITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIF-A----GKQLED-GRTLADYNIQKESTLHLVLRLRGGI 77 (136)
Q Consensus 13 ~~i~v~~~~TV~~LK~~I~~~~gip~~-~qrLi~-~----Gk~L~D-~~tL~~ygI~~gstI~l~~r~~gG~ 77 (136)
+++.++..+|+.+|++.+...++++++ +.||.. . ...|.| +.+|.++++.++..|.+-++...|.
T Consensus 154 ~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r~~dg~ 225 (231)
T 3jyu_A 154 LSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQNEDGT 225 (231)
T ss_dssp EEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEECCTTSC
T ss_pred EEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEecCCCC
Confidence 456789999999999999999999997 689874 3 246766 5899999999999999999988774
No 120
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=96.78 E-value=0.0072 Score=45.08 Aligned_cols=66 Identities=23% Similarity=0.363 Sum_probs=54.7
Q ss_pred EEEEEecCCCcHHHHHHHHhhhhCCCCC-CeEEEe---CC--EEccC-CccccccccCCCCEEEEEEEecCCc
Q 032678 12 TITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIF---AG--KQLED-GRTLADYNIQKESTLHLVLRLRGGI 77 (136)
Q Consensus 12 ~~~i~v~~~~TV~~LK~~I~~~~gip~~-~qrLi~---~G--k~L~D-~~tL~~ygI~~gstI~l~~r~~gG~ 77 (136)
..++.++..+|+.+|++.+...++++++ +.||.. .+ ..|+| +.||.++++.++..|.+-.+..+|.
T Consensus 141 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r~~dg~ 213 (217)
T 4a3p_A 141 VVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKNEDGT 213 (217)
T ss_dssp EEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEECCCC-C
T ss_pred ceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEecCCCC
Confidence 3567899999999999999999999997 688863 23 35666 5799999999999999999987774
No 121
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.71 E-value=0.0029 Score=40.93 Aligned_cols=62 Identities=13% Similarity=0.239 Sum_probs=53.6
Q ss_pred EEEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEe---CCEEccCCccccccccCC
Q 032678 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF---AGKQLEDGRTLADYNIQK 63 (136)
Q Consensus 2 qI~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~---~Gk~L~D~~tL~~ygI~~ 63 (136)
++.|.-...+...++|+|..++.+|--.|.++..+.|+.-.|.- .+..|+-+++|.||||++
T Consensus 12 RLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdLskSLndlgirE 76 (91)
T 2daj_A 12 RVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE 76 (91)
T ss_dssp EEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCTTSCHHHHTCSE
T ss_pred EEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccchhcchhhhhhhh
Confidence 45666666677889999999999999999999999999998874 456888899999999986
No 122
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=96.68 E-value=0.00034 Score=41.07 Aligned_cols=25 Identities=12% Similarity=-0.075 Sum_probs=23.1
Q ss_pred HhhcCCCcceeeccccccCCcceeee
Q 032678 86 ARKYNQDKMICRKYAHVSLFLFFSFI 111 (136)
Q Consensus 86 a~k~n~~k~~cr~~~ya~~~~~a~~~ 111 (136)
+++...++++|++| ++++|++|.+|
T Consensus 7 ie~r~~~k~iCpkC-~a~~~~gaw~C 31 (51)
T 3j21_g 7 AEARIFKKYVCLRC-GATNPWGAKKC 31 (51)
T ss_dssp HHHHSSSEEECTTT-CCEECTTCSSC
T ss_pred HHHHHhCCccCCCC-CCcCCCCceec
Confidence 56778899999999 99999999999
No 123
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=96.53 E-value=0.0062 Score=38.12 Aligned_cols=66 Identities=14% Similarity=0.350 Sum_probs=49.5
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeCCEEccCCccccccccCCCCEEEEEEEecCC
Q 032678 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (136)
Q Consensus 1 MqI~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~gG 76 (136)
|+|+|+-.......+++++..|+.+|-+ ..|+|++.-.+..+|+.+..+. +.+|++|.++--..||
T Consensus 1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL~----~Lgl~~~~VvV~vNG~~v~~d~------~l~GD~VeIv~~V~G~ 66 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAVDDDGTYADLVR----AVDLSPHEVTVLVDGRPVPEDQ------SVEVDRVKVLRLIKGG 66 (74)
T ss_dssp CEEEEECSSSSEEEEECSTTCSHHHHHH----TTCCCSSCCCEECCCCCCCTTS------SSCCCCEEECSSCSCC
T ss_pred CEEEEEEeCccceeEEcCCCCcHHHHHH----HcCCCcceEEEEECCEECCHHH------CCCCCEEEEEEeeccc
Confidence 8999997755556689999999998875 4688998887788999887555 2348888875434444
No 124
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=96.22 E-value=0.04 Score=37.20 Aligned_cols=63 Identities=38% Similarity=0.494 Sum_probs=44.6
Q ss_pred CCEEEEEecCCCcHHHHHHHHhhhh--CCC------CCCeEEEe----CCEEccCC-------------ccccccccCCC
Q 032678 10 GKTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIF----AGKQLEDG-------------RTLADYNIQKE 64 (136)
Q Consensus 10 g~~~~i~v~~~~TV~~LK~~I~~~~--gip------~~~qrLi~----~Gk~L~D~-------------~tL~~ygI~~g 64 (136)
+..+.+.|-..+||.++|++|-+.. |.| ++++.|-+ .|+.|.|. .||+.|+|.+|
T Consensus 23 ~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 102 (111)
T 4e71_A 23 VDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVNTLMHYNVRDG 102 (111)
T ss_dssp CCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CCCCCBHHHHTCCTT
T ss_pred CCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcceEecchhhcCCCCC
Confidence 4567788889999999999997652 333 34556654 24566552 36999999999
Q ss_pred CEEEEEEE
Q 032678 65 STLHLVLR 72 (136)
Q Consensus 65 stI~l~~r 72 (136)
+++.++.+
T Consensus 103 atl~l~~~ 110 (111)
T 4e71_A 103 ATLILSKV 110 (111)
T ss_dssp CEEEEEEC
T ss_pred CEEEEEeC
Confidence 99988754
No 125
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=96.20 E-value=0.023 Score=35.04 Aligned_cols=71 Identities=15% Similarity=0.331 Sum_probs=48.3
Q ss_pred CEEEEEeCCC-CEEEEEecCCCcHHHHHHHHhhhhCCCC--CCeEEEeCCEEccCCccccccccCCCCEEEEEEEecCC
Q 032678 1 MQIFVKTLTG-KTITLEVESSDTIDNVKAKIQDKEGIPP--DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (136)
Q Consensus 1 MqI~Vk~~~g-~~~~i~v~~~~TV~~LK~~I~~~~gip~--~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~gG 76 (136)
|.|+|+.... +..++++ +..||.+|.+.+....++.. ....+.-+|+...+ .+.-+++|++|.+..-..||
T Consensus 1 M~v~V~~fa~l~~~~~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~----~~~~l~~gDeV~i~PpvsGG 74 (74)
T 3rpf_C 1 MMVEVRFFGPIKEENFFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDN----LNTPLKDGDVISLLPPVCGG 74 (74)
T ss_dssp CEEEEEECTTCCCCCEEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECC----TTCCCCTTCEEEEECCBCCC
T ss_pred CEEEEEEEeecceeEEee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCC----CCcCCCCCCEEEEECCCCCC
Confidence 7888887642 1134666 56899999999987543322 34566678877443 23457789999998777776
No 126
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=96.00 E-value=0.038 Score=43.83 Aligned_cols=74 Identities=22% Similarity=0.346 Sum_probs=56.9
Q ss_pred EEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhC----CCCCCeEEEe------CCEEccCCccccccccCCCCEEEEE--
Q 032678 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG----IPPDQQRLIF------AGKQLEDGRTLADYNIQKESTLHLV-- 70 (136)
Q Consensus 3 I~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~g----ip~~~qrLi~------~Gk~L~D~~tL~~ygI~~gstI~l~-- 70 (136)
+.|.-. +.+.+++++|++||.+....|.++.. .++++--|+- .|.=|++++||+.|++++|+.++..
T Consensus 6 ~~~~~~-~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~~~ 84 (371)
T 3ivf_A 6 LKISIG-NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYRKK 84 (371)
T ss_dssp EEEEET-TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEEEC
T ss_pred EEEEec-ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeeccCc
Confidence 445444 67788999999999999999987763 3567777766 3344888889999999999988754
Q ss_pred -----EEecCCc
Q 032678 71 -----LRLRGGI 77 (136)
Q Consensus 71 -----~r~~gG~ 77 (136)
+.+.+|.
T Consensus 85 ~~~~~V~l~dg~ 96 (371)
T 3ivf_A 85 QRPLKIRMLDGT 96 (371)
T ss_dssp EEEEEEECTTSC
T ss_pred eeEEEEECcCCC
Confidence 5566773
No 127
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=95.93 E-value=0.063 Score=34.80 Aligned_cols=71 Identities=13% Similarity=0.298 Sum_probs=48.1
Q ss_pred CEEEEEeCC------C-CEEEEEecCCCcHHHHHHHHhhhhC-C----------CCCCeEEEeCCEEccCCccccccccC
Q 032678 1 MQIFVKTLT------G-KTITLEVESSDTIDNVKAKIQDKEG-I----------PPDQQRLIFAGKQLEDGRTLADYNIQ 62 (136)
Q Consensus 1 MqI~Vk~~~------g-~~~~i~v~~~~TV~~LK~~I~~~~g-i----------p~~~qrLi~~Gk~L~D~~tL~~ygI~ 62 (136)
|+|+|+... | ....+++++..||.+|.+.+..... + ......+..+|+..+. +.-++
T Consensus 10 ~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~~L~ 84 (98)
T 1vjk_A 10 VKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEELK 84 (98)
T ss_dssp EEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCBCC
T ss_pred EEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CCCCC
Confidence 677777653 3 4677888888999999999987631 1 1234567778887653 44677
Q ss_pred CCCEEEEEEEecCC
Q 032678 63 KESTLHLVLRLRGG 76 (136)
Q Consensus 63 ~gstI~l~~r~~gG 76 (136)
+|++|.++....||
T Consensus 85 dGDeV~i~ppv~GG 98 (98)
T 1vjk_A 85 DGDVVGVFPPVSGG 98 (98)
T ss_dssp TTCEEEEESCC---
T ss_pred CCCEEEEECCCCCC
Confidence 89999887666555
No 128
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=95.80 E-value=0.057 Score=34.70 Aligned_cols=60 Identities=18% Similarity=0.351 Sum_probs=53.0
Q ss_pred EEecCCCcHHHHHHHHhhhhCCCCCCeEEEeCCEEccCCccccccccCCCCEEEEEEEec
Q 032678 15 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (136)
Q Consensus 15 i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~ 74 (136)
-.++=..+++.||+.++.+.|++-+.-.+...+..|+++++|.+-+++-...|.+.+...
T Consensus 7 qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQinvqik 66 (89)
T 2juo_A 7 QAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLSVQVI 66 (89)
T ss_dssp EEEESSSBGGGHHHHSHHHHCSCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEEEEEEE
T ss_pred hhccccCcHHHHHHHHHHHhcCCcccCeEEeeccccCCCccHHHhhcccccEEEEEEEEE
Confidence 346667899999999999999999999999999999999999999999888888877643
No 129
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=95.72 E-value=0.099 Score=36.03 Aligned_cols=64 Identities=27% Similarity=0.405 Sum_probs=46.5
Q ss_pred CCCEEEEEecCCCcHHHHHHHHhhhh--CCC------CCCeEEEe----CCE-EccCC-------------ccccccccC
Q 032678 9 TGKTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIF----AGK-QLEDG-------------RTLADYNIQ 62 (136)
Q Consensus 9 ~g~~~~i~v~~~~TV~~LK~~I~~~~--gip------~~~qrLi~----~Gk-~L~D~-------------~tL~~ygI~ 62 (136)
++..+.+.|-..+||.++|++|-+.. +.| ++++.|-+ .|+ .|.|. .||+.|+|.
T Consensus 15 ~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V~ 94 (127)
T 3h6n_A 15 GMDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKIP 94 (127)
T ss_dssp CCCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTCC
T ss_pred CCCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCCC
Confidence 34567888889999999999997652 333 35666665 233 35542 369999999
Q ss_pred CCCEEEEEEE
Q 032678 63 KESTLHLVLR 72 (136)
Q Consensus 63 ~gstI~l~~r 72 (136)
+|+++.++.+
T Consensus 95 dgatv~l~~~ 104 (127)
T 3h6n_A 95 EGASLAMSLI 104 (127)
T ss_dssp TTCEEEEEEC
T ss_pred CCCEEEEEEc
Confidence 9999998865
No 130
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=95.26 E-value=0.097 Score=36.55 Aligned_cols=63 Identities=33% Similarity=0.540 Sum_probs=45.3
Q ss_pred CEEEEEecCCCcHHHHHHHHhhhh--CCC------CCCeEEEe----CCE-EccCC-------------ccccccccCCC
Q 032678 11 KTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIF----AGK-QLEDG-------------RTLADYNIQKE 64 (136)
Q Consensus 11 ~~~~i~v~~~~TV~~LK~~I~~~~--gip------~~~qrLi~----~Gk-~L~D~-------------~tL~~ygI~~g 64 (136)
..+.+.|-..+||.++|++|-+.. |.| +++.-|-. .|+ .|.|. .||+.|+|.+|
T Consensus 41 ~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~Dg 120 (138)
T 2r2o_A 41 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG 120 (138)
T ss_dssp CCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCTT
T ss_pred CceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCCC
Confidence 457888989999999999997763 343 33445543 243 36553 27999999999
Q ss_pred CEEEEEEEe
Q 032678 65 STLHLVLRL 73 (136)
Q Consensus 65 stI~l~~r~ 73 (136)
++|.++.+.
T Consensus 121 a~l~l~~~~ 129 (138)
T 2r2o_A 121 ATVALVPCL 129 (138)
T ss_dssp CEEEEEEC-
T ss_pred CEEEEEECC
Confidence 999998764
No 131
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=95.02 E-value=0.2 Score=31.86 Aligned_cols=74 Identities=18% Similarity=0.258 Sum_probs=48.1
Q ss_pred CEEEEEeC------CCCEEEEEecCCCcHHHHHHHHhhhhC-C-----C-------CCCeEEEeCCEEccCCcccccccc
Q 032678 1 MQIFVKTL------TGKTITLEVESSDTIDNVKAKIQDKEG-I-----P-------PDQQRLIFAGKQLEDGRTLADYNI 61 (136)
Q Consensus 1 MqI~Vk~~------~g~~~~i~v~~~~TV~~LK~~I~~~~g-i-----p-------~~~qrLi~~Gk~L~D~~tL~~ygI 61 (136)
|+|+|+.. .|....+++ +..||.+|.+.+..+.. + . .....+..+|+...+..-+ +.-+
T Consensus 1 M~v~V~~fa~lr~~~g~~~~~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~~-~~~L 78 (93)
T 3dwg_C 1 MNVTVSIPTILRPHTGGQKSVSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGGL-ATAI 78 (93)
T ss_dssp -CEEEECCGGGGGGTTTCSEEEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTGG-GCBC
T ss_pred CEEEEEEeHHHHHHhCCCeEEec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCCC-CcCC
Confidence 77888754 243334665 45899999999987752 0 1 0135667788876542222 3457
Q ss_pred CCCCEEEEEEEecCC
Q 032678 62 QKESTLHLVLRLRGG 76 (136)
Q Consensus 62 ~~gstI~l~~r~~gG 76 (136)
++|++|.+.....||
T Consensus 79 ~~gDeV~i~Ppv~GG 93 (93)
T 3dwg_C 79 ADGDSVTILPAVAGG 93 (93)
T ss_dssp CTTCEEEEEECCTTC
T ss_pred CCCCEEEEECCCCCC
Confidence 889999998887776
No 132
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=94.98 E-value=0.36 Score=30.31 Aligned_cols=61 Identities=15% Similarity=0.259 Sum_probs=44.5
Q ss_pred CEEEEEecCCCcHHHHHHHHhhhhC-C-----CC-----CCeEEEeCCEEccCCccccccccCCCCEEEEEEEecCC
Q 032678 11 KTITLEVESSDTIDNVKAKIQDKEG-I-----PP-----DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (136)
Q Consensus 11 ~~~~i~v~~~~TV~~LK~~I~~~~g-i-----p~-----~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~gG 76 (136)
....++++...||.+|.+.+..... + .. ....+..+|+.... +.-+++|++|.+.....||
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~-----~~~l~~gDeV~i~Ppv~GG 89 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAAL-----GEATAAGDELALFPPVSGG 89 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCT-----TSBCCTTCEEEEECCCSCC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCC-----CcccCCCCEEEEECCCCCC
Confidence 5678888888999999999987642 1 00 12567788887765 3457779999998777766
No 133
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=94.92 E-value=0.061 Score=34.45 Aligned_cols=45 Identities=11% Similarity=0.208 Sum_probs=38.5
Q ss_pred EEEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeCCE
Q 032678 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 48 (136)
Q Consensus 2 qI~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk 48 (136)
.|.|... -++.|+|++..+..+|.++|.++.+++++...|.|...
T Consensus 7 ~VKV~~~--~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~ 51 (83)
T 1oey_A 7 TLKVHYK--YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPR 51 (83)
T ss_dssp EEEEESS--SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECCT
T ss_pred EEEEEEE--EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeCC
Confidence 4555433 68999999999999999999999999999999998764
No 134
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=94.83 E-value=0.11 Score=35.28 Aligned_cols=63 Identities=30% Similarity=0.472 Sum_probs=44.6
Q ss_pred CEEEEEecCCCcHHHHHHHHhhhh--CCC------CCCeEEEe-C---CE-EccCC-------------ccccccccCCC
Q 032678 11 KTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIF-A---GK-QLEDG-------------RTLADYNIQKE 64 (136)
Q Consensus 11 ~~~~i~v~~~~TV~~LK~~I~~~~--gip------~~~qrLi~-~---Gk-~L~D~-------------~tL~~ygI~~g 64 (136)
..+.+.|-..+||.++|++|-+.. |.| ++++.|-+ . |+ .|.|. .||++|+|.+|
T Consensus 27 ~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 106 (117)
T 4e74_A 27 PEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPDG 106 (117)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCCTT
T ss_pred CceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCCCC
Confidence 347788889999999999997652 333 34555654 2 23 35441 36999999999
Q ss_pred CEEEEEEEe
Q 032678 65 STLHLVLRL 73 (136)
Q Consensus 65 stI~l~~r~ 73 (136)
+++.++.+.
T Consensus 107 atl~l~~~~ 115 (117)
T 4e74_A 107 SVVALVSKQ 115 (117)
T ss_dssp CEEEEEECC
T ss_pred CEEEEEeCC
Confidence 999998763
No 135
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=94.26 E-value=0.092 Score=31.53 Aligned_cols=66 Identities=15% Similarity=0.261 Sum_probs=45.3
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeCCEEccCCccccccccCCCCEEEEEEEecCC
Q 032678 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (136)
Q Consensus 1 MqI~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~gG 76 (136)
|+|+| +|+.. ++....|+.+|.+.+ ++++....+..+|+....+ ...+.-+++|+.|.++.-..||
T Consensus 1 m~i~v---Ng~~~--~~~~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~~gD~v~i~~~V~GG 66 (66)
T 1f0z_A 1 MQILF---NDQAM--QCAAGQTVHELLEQL----DQRQAGAALAINQQIVPRE-QWAQHIVQDGDQILLFQVIAGG 66 (66)
T ss_dssp CCEEE---SSCEE--CCCTTCCHHHHHHHH----TCCCSSEEEEETTEEECHH-HHTTCCCCTTEEECEEESCCCC
T ss_pred CEEEE---CCEEE--EcCCCCcHHHHHHHc----CCCCCCEEEEECCEECCch-hcCCcCCCCCCEEEEEeecccC
Confidence 55554 46654 556778999999887 4567777788899887531 1223356789999988766665
No 136
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=94.12 E-value=0.055 Score=37.34 Aligned_cols=34 Identities=21% Similarity=0.323 Sum_probs=31.1
Q ss_pred EEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeC
Q 032678 13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 46 (136)
Q Consensus 13 ~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~ 46 (136)
..+.|..++|+.+|+..|++..|+|+++|||..-
T Consensus 58 ~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~~ 91 (130)
T 2kvr_A 58 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPM 91 (130)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEEC
T ss_pred ceEEEeccCcHHHHHHHHHHHhCCCcccEEEEEe
Confidence 4678889999999999999999999999999864
No 137
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=93.92 E-value=0.25 Score=31.64 Aligned_cols=61 Identities=13% Similarity=0.198 Sum_probs=43.0
Q ss_pred CCCEEEEEecCC-CcHHHHHHHHhhhhCCCCCCeEEEeCCEEccCCccccccccCCCCEEEEEEEecCC
Q 032678 9 TGKTITLEVESS-DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (136)
Q Consensus 9 ~g~~~~i~v~~~-~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~gG 76 (136)
+|+. ++++.. .||.+|.+.+ +++++...+..+|+.+..+ ...+.-+++|+.|.++.-..||
T Consensus 26 NGe~--~el~~~~~Tv~dLL~~L----~~~~~~vaVavNg~iV~~~-~~~~~~L~dGD~Vei~~~V~GG 87 (87)
T 1tyg_B 26 NGKD--VKWKKDTGTIQDLLASY----QLENKIVIVERNKEIIGKE-RYHEVELCDRDVIEIVHFVGGG 87 (87)
T ss_dssp TTEE--ECCSSSCCBHHHHHHHT----TCTTSCCEEEETTEEECGG-GTTTSBCCSSSEEEEEEECCC-
T ss_pred CCEE--EECCCCCCcHHHHHHHh----CCCCCCEEEEECCEECChh-hcCCcCCCCCCEEEEEcccccC
Confidence 4554 445666 8999999876 5667777788999987532 3334567889999998776665
No 138
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=93.89 E-value=0.065 Score=33.22 Aligned_cols=66 Identities=9% Similarity=0.188 Sum_probs=46.6
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeCCEEccCCccccccccCCCCEEEEEEEecCCc
Q 032678 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 77 (136)
Q Consensus 1 MqI~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~gG~ 77 (136)
|+|+| +|+... + +..||.+|-+. .++++...-+..+|..+.. ....+.-+++|+.|.++.-..||.
T Consensus 1 M~I~v---NG~~~e--~-~~~Tl~~LL~~----l~~~~~~vAV~vNg~iVpr-~~~~~~~L~dGD~veIv~~VgGG~ 66 (73)
T 2kl0_A 1 MLVTI---NGEQRE--V-QSASVAALMTE----LDCTGGHFAVALNYDVVPR-GKWDETPVTAGDEIEILTPRQGGL 66 (73)
T ss_dssp CCEEE---TTEEEC--C-CCSBHHHHHHH----TTCCSSSCEEEESSSEECH-HHHTTCBCCTTCEEEEECCCCCCC
T ss_pred CEEEE---CCEEEE--c-CCCcHHHHHHH----cCCCCCcEEEEECCEECCh-HHcCcccCCCCCEEEEEccccCCc
Confidence 55555 466544 4 56899998775 4677888888899998753 233445677899999887777764
No 139
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=93.70 E-value=0.092 Score=32.94 Aligned_cols=68 Identities=16% Similarity=0.343 Sum_probs=48.7
Q ss_pred CEEEEEeCCCCEEEEEec--CCCcHHHHHHHHhhhhCCC-CCCeEEEeCCEEccCCccccccccCCCCEEEEEEEecCCc
Q 032678 1 MQIFVKTLTGKTITLEVE--SSDTIDNVKAKIQDKEGIP-PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 77 (136)
Q Consensus 1 MqI~Vk~~~g~~~~i~v~--~~~TV~~LK~~I~~~~gip-~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~gG~ 77 (136)
|+|+| +|+.. +++ ...||.+|-+.+ +++ +...-+..+|..+..+ ...+.-+++|+.|.++.-..||.
T Consensus 1 M~I~v---NGe~~--e~~~~~~~Tl~~LL~~l----~~~~~~~vAVavNg~iVpr~-~~~~~~L~dGD~IEIv~~VgGG~ 70 (78)
T 2k5p_A 1 MNLTV---NGKPS--TVDGAESLNVTELLSAL----KVAQAEYVTVELNGEVLERE-AFDATTVKDGDAVEFLYFMGGGK 70 (78)
T ss_dssp CEEEE---TTEEE--ECSSCSCEEHHHHHHHH----TCSCTTTCCEEETTEECCTT-HHHHCEECSSBCEEECCCCCCSC
T ss_pred CEEEE---CCEEE--EcCCCCCCcHHHHHHHc----CCCCCCcEEEEECCEECChH-HcCcccCCCCCEEEEEeeecCCC
Confidence 66655 46644 455 678999998765 566 7777788999988543 34455678899999987777775
Q ss_pred c
Q 032678 78 I 78 (136)
Q Consensus 78 ~ 78 (136)
-
T Consensus 71 ~ 71 (78)
T 2k5p_A 71 L 71 (78)
T ss_dssp C
T ss_pred c
Confidence 3
No 140
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=93.33 E-value=0.55 Score=35.65 Aligned_cols=71 Identities=17% Similarity=0.270 Sum_probs=52.8
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhCCCCC-CeEEEe---CCE--EccCCccccccccCCCCEEEEEEE
Q 032678 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIF---AGK--QLEDGRTLADYNIQKESTLHLVLR 72 (136)
Q Consensus 1 MqI~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~-~qrLi~---~Gk--~L~D~~tL~~ygI~~gstI~l~~r 72 (136)
|.+.|..++| +..+.+++++|+.++-+.|.++.|+... ..-|.+ +|. -|+.++.+.+.++..+....+..|
T Consensus 2 i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~~~~l~fr 78 (294)
T 1ef1_A 2 ISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLFKFR 78 (294)
T ss_dssp EEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEEEEEE
T ss_pred EEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeecccccCHHhhccCCCCCEEEEEE
Confidence 4688888998 6889999999999999999999998653 345554 333 367778888876655555555444
No 141
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=93.33 E-value=0.25 Score=30.38 Aligned_cols=60 Identities=7% Similarity=0.154 Sum_probs=41.4
Q ss_pred CEEEEEecCCCcHHHHHHHHhhhhC-----CCCCCeEEEeCCEEccCCccccccccCCCCEEEEEEEecCC
Q 032678 11 KTITLEVESSDTIDNVKAKIQDKEG-----IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (136)
Q Consensus 11 ~~~~i~v~~~~TV~~LK~~I~~~~g-----ip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~gG 76 (136)
....++ .+..||.+|.+.+..... ++.....+..+|+.... +.-+++|++|.++....||
T Consensus 17 ~~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~-----~~~l~~gD~V~i~Ppv~GG 81 (81)
T 1fm0_D 17 DATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFFPPVTGG 81 (81)
T ss_dssp SEEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCT-----TCBCCTTCEEEEECCCCCC
T ss_pred CeEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCC-----CCCCCCCCEEEEeCCCCCC
Confidence 345555 567899999999875531 22334567788887754 3357789999998766665
No 142
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=93.17 E-value=0.8 Score=31.40 Aligned_cols=61 Identities=34% Similarity=0.537 Sum_probs=41.5
Q ss_pred CEEEEEecCCCcHHHHHHHHhhh----hCCCC----CCeEEEe-CC---EEccC----------C----ccccccccCCC
Q 032678 11 KTITLEVESSDTIDNVKAKIQDK----EGIPP----DQQRLIF-AG---KQLED----------G----RTLADYNIQKE 64 (136)
Q Consensus 11 ~~~~i~v~~~~TV~~LK~~I~~~----~gip~----~~qrLi~-~G---k~L~D----------~----~tL~~ygI~~g 64 (136)
..+.+.|-..+||.++|++|-+. .|.|- +++.|-+ .| ..|.| . .||+.|+|.+|
T Consensus 39 ~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V~Dg 118 (126)
T 3kuz_A 39 RNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEISNG 118 (126)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTCCTT
T ss_pred CceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCCCCC
Confidence 46788888999999999999653 36654 3444433 11 22322 1 26889999999
Q ss_pred CEEEEEE
Q 032678 65 STLHLVL 71 (136)
Q Consensus 65 stI~l~~ 71 (136)
++|-++-
T Consensus 119 atlal~k 125 (126)
T 3kuz_A 119 STIKVFK 125 (126)
T ss_dssp CEEEEEE
T ss_pred CEEEEee
Confidence 9998763
No 143
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=93.05 E-value=0.23 Score=29.50 Aligned_cols=61 Identities=15% Similarity=0.331 Sum_probs=42.2
Q ss_pred CCCCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeCCEEccCCccccccccCCCCEEEEEEEecCC
Q 032678 8 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (136)
Q Consensus 8 ~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~gG 76 (136)
.+|+... + +..|+.+|.+.+ ++++....+..+|+..+.+ ...+.-+++|+.|.++.-..||
T Consensus 4 vNg~~~~--~-~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~dgD~v~i~~~V~GG 64 (64)
T 2cu3_A 4 LNGEPRP--L-EGKTLKEVLEEM----GVELKGVAVLLNEEAFLGL-EVPDRPLRDGDVVEVVALMQGG 64 (64)
T ss_dssp ETTEEEC--C-TTCCHHHHHHHH----TBCGGGEEEEETTEEEEGG-GCCCCCCCTTCEEEEEECCCC-
T ss_pred ECCEEEE--c-CCCcHHHHHHHc----CCCCCcEEEEECCEECCcc-ccCCcCCCCCCEEEEEeecccC
Confidence 4566554 4 568999999887 4566677778899877532 2233457789999998766665
No 144
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=92.95 E-value=0.21 Score=30.49 Aligned_cols=60 Identities=13% Similarity=0.212 Sum_probs=42.5
Q ss_pred CEEEEEecCCCcHHHHHHHHhhhhCCCCCCe--EEEeCCEEccCCccccccccCCCCEEEEEEEecCC
Q 032678 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQ--RLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (136)
Q Consensus 11 ~~~~i~v~~~~TV~~LK~~I~~~~gip~~~q--rLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~gG 76 (136)
+...+++....||.+|.+.+..... ..... .+..+|+..+.+ .-+++|+.|.++.-..||
T Consensus 16 ~~~~~~~~~~~tv~~ll~~l~~~~p-~~~~v~~~v~vNg~~v~~~-----~~L~~gD~V~i~ppv~GG 77 (77)
T 2q5w_D 16 AQEDIVLEQALTVQQFEDLLFERYP-QINNKKFQVAVNEEFVQKS-----DFIQPNDTVALIPPVSGG 77 (77)
T ss_dssp SEEECCCSSCEEHHHHHHHHHHHCG-GGTTCCCEEEETTEEECTT-----SEECTTCEEEEECSCCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCc-chhcceEEEEECCEECCCC-----CCcCCCCEEEEECCCCCC
Confidence 3566777778899999999877631 01233 677899887654 457789999987666655
No 145
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=92.81 E-value=0.7 Score=39.47 Aligned_cols=64 Identities=28% Similarity=0.472 Sum_probs=45.2
Q ss_pred CEEEEEecCCCcHHHHHHHHhhhh--CCC------CCCeEEEe----CCE-EccCC-------------ccccccccCCC
Q 032678 11 KTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIF----AGK-QLEDG-------------RTLADYNIQKE 64 (136)
Q Consensus 11 ~~~~i~v~~~~TV~~LK~~I~~~~--gip------~~~qrLi~----~Gk-~L~D~-------------~tL~~ygI~~g 64 (136)
..+.+.|-..+||.++|++|-+.. |+| +++..|-+ .|+ .|.|. .||++|+|.+|
T Consensus 247 ~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~Dg 326 (627)
T 3ig3_A 247 AQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECDWKRVNSLAHYQVTDG 326 (627)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETTEEECCBTTTTTCCTT
T ss_pred CceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccCceeEecchhhcCCCCC
Confidence 567788889999999999997652 332 34555543 233 34442 36999999999
Q ss_pred CEEEEEEEec
Q 032678 65 STLHLVLRLR 74 (136)
Q Consensus 65 stI~l~~r~~ 74 (136)
++|.++.+..
T Consensus 327 a~v~L~p~~~ 336 (627)
T 3ig3_A 327 SLVALVPKQV 336 (627)
T ss_dssp CEEEEEEC--
T ss_pred ceEEEEeccc
Confidence 9999988754
No 146
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=92.74 E-value=0.84 Score=35.02 Aligned_cols=70 Identities=11% Similarity=0.119 Sum_probs=52.6
Q ss_pred EEEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhCCCC-CCeEEEe--CCE--EccCCccccccccCCCCEEEEEEE
Q 032678 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIF--AGK--QLEDGRTLADYNIQKESTLHLVLR 72 (136)
Q Consensus 2 qI~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~-~~qrLi~--~Gk--~L~D~~tL~~ygI~~gstI~l~~r 72 (136)
.+.|..++| ++.+++++++|+.+|-+.|..+.|+.. +..-|.+ +|. -|+.++.+.+.++..+....+..+
T Consensus 24 ~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~~~~l~fr 98 (314)
T 1h4r_A 24 TVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPVTFHFL 98 (314)
T ss_dssp EEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEEEECCTTSBGGGSSCCCSSSEEEEEE
T ss_pred EEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEEeCCcCeeCCCccCHHHcCCCCCCCEEEEEE
Confidence 577888898 888999999999999999999999864 3335554 444 377788888877655555544444
No 147
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=92.73 E-value=0.56 Score=30.24 Aligned_cols=46 Identities=15% Similarity=0.252 Sum_probs=36.6
Q ss_pred EEEEe-CCCCEEEEEecCCCcHHHHHHHHhhhhCCCCCC-eEEEeCCE
Q 032678 3 IFVKT-LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAGK 48 (136)
Q Consensus 3 I~Vk~-~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~-qrLi~~Gk 48 (136)
|+||. .+|....+.++++.+..+|.+++.+.++++.++ ..+.|.+.
T Consensus 7 vkvK~~~~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DE 54 (89)
T 1vd2_A 7 VRVKAYYRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDE 54 (89)
T ss_dssp EEEEEESSSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCS
T ss_pred EEEEEEeCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECC
Confidence 34443 467888999999999999999999999987654 56667665
No 148
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=92.62 E-value=0.14 Score=33.69 Aligned_cols=59 Identities=10% Similarity=0.264 Sum_probs=40.3
Q ss_pred EEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeC----CE--------EccC------CccccccccCCCCEEEEE
Q 032678 12 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA----GK--------QLED------GRTLADYNIQKESTLHLV 70 (136)
Q Consensus 12 ~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~----Gk--------~L~D------~~tL~~ygI~~gstI~l~ 70 (136)
...+++++++|+++|-+.+.+.-......=.|... ++ .|+. +++|.++|+.+|+.|+|.
T Consensus 6 ~~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~Vt 82 (98)
T 1y8x_B 6 PQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 82 (98)
T ss_dssp CCCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEE
T ss_pred cEEEEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEEE
Confidence 45688999999999999998854432222223222 22 2321 467999999999999874
No 149
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=92.54 E-value=0.39 Score=32.20 Aligned_cols=75 Identities=19% Similarity=0.259 Sum_probs=47.0
Q ss_pred CEEEEEeCC------C--CEEEEEecC---CCcHHHHHHHHhhhhCCCCCCeEEEeC-CE------EccCCc---cc--c
Q 032678 1 MQIFVKTLT------G--KTITLEVES---SDTIDNVKAKIQDKEGIPPDQQRLIFA-GK------QLEDGR---TL--A 57 (136)
Q Consensus 1 MqI~Vk~~~------g--~~~~i~v~~---~~TV~~LK~~I~~~~gip~~~qrLi~~-Gk------~L~D~~---tL--~ 57 (136)
|+|+|+... | +..+++++. ..||.+|.+.+.+.+ |....+|+.. |+ .+-++. .| .
T Consensus 12 M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~--~~~~~~lf~~~g~lr~~i~VlVN~~di~~l~gl 89 (114)
T 1wgk_A 12 LCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNL--LKERPELFIQGDSVRPGILVLINDADWELLGEL 89 (114)
T ss_dssp EEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTT--CCSCHHHHCCSSSCCSSEEEEESSSBHHHHCTT
T ss_pred cEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHc--cchhHhhCccCCcccCCeEEEECCeeeeccCCc
Confidence 678887663 3 366788883 369999999998875 2222222211 21 122222 11 2
Q ss_pred ccccCCCCEEEEEEEecCCc
Q 032678 58 DYNIQKESTLHLVLRLRGGI 77 (136)
Q Consensus 58 ~ygI~~gstI~l~~r~~gG~ 77 (136)
++-+++|+.|.++....||.
T Consensus 90 dt~L~dGDeV~iip~vaGG~ 109 (114)
T 1wgk_A 90 DYQLQDQDSILFISTLHGGS 109 (114)
T ss_dssp TCBCCSSEEEEEEECSCCCC
T ss_pred CcCCCCCCEEEEeCCCCCCC
Confidence 46688999999998888883
No 150
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=91.87 E-value=1.6 Score=27.96 Aligned_cols=73 Identities=15% Similarity=0.252 Sum_probs=44.6
Q ss_pred CEEEEEeC------C-C-CEEEEEec--CCCcHHHHHHHHhhhhCCCCCC-------------eEEEeCCEEccCCccc-
Q 032678 1 MQIFVKTL------T-G-KTITLEVE--SSDTIDNVKAKIQDKEGIPPDQ-------------QRLIFAGKQLEDGRTL- 56 (136)
Q Consensus 1 MqI~Vk~~------~-g-~~~~i~v~--~~~TV~~LK~~I~~~~gip~~~-------------qrLi~~Gk~L~D~~tL- 56 (136)
|+|+|+.. . | +..++++. +..||.+|.+.+.++..-.... ..+..+|+..+ .+
T Consensus 2 M~i~V~~fa~lre~~~g~~~~~~~l~~~~~~Tv~~L~~~L~~~~~~~~~~l~~~~~~~~lr~~~~v~VN~~~~~---~~~ 78 (99)
T 2qjl_A 2 VNVKVEFLGGLDAIFGKQRVHKIKMDKEDPVTVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDTDWE---LEG 78 (99)
T ss_dssp EEEEEEEETTGGGGTTTCCEEEEEECSCSCCBHHHHHHHHHHHTCSSGGGHHHHEETTEECTTEEEEETTEEGG---GGT
T ss_pred cEEEEEEchHHHHHhCCCcEEEEecCCCCCCcHHHHHHHHHHHCchhhHHHhhhccCCccccCeEEEECCEEcc---ccC
Confidence 56777644 2 3 45667776 6789999999998776211010 12334444321 11
Q ss_pred -cccccCCCCEEEEEEEecCC
Q 032678 57 -ADYNIQKESTLHLVLRLRGG 76 (136)
Q Consensus 57 -~~ygI~~gstI~l~~r~~gG 76 (136)
.+.-+++|++|.+.....||
T Consensus 79 ~~d~~L~dgDeVa~~Ppv~GG 99 (99)
T 2qjl_A 79 EKDYILEDGDIISFTSTLHGG 99 (99)
T ss_dssp GGGCBCCTTCEEEEEECTTCC
T ss_pred CCCcCcCCCCEEEEECCCCCC
Confidence 24467889999998777666
No 151
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=91.37 E-value=1.2 Score=35.10 Aligned_cols=71 Identities=27% Similarity=0.400 Sum_probs=54.1
Q ss_pred EEEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhCCCC-CCeEEEeCC---------EEccCCccccccccCCCCEEEEEE
Q 032678 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFAG---------KQLEDGRTLADYNIQKESTLHLVL 71 (136)
Q Consensus 2 qI~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~-~~qrLi~~G---------k~L~D~~tL~~ygI~~gstI~l~~ 71 (136)
.+.|..++|....+.+++++|+.++-+.|..+.|+.. +..-|.+.. .-|+.++++.+.+.....++++.+
T Consensus 87 ~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~~~~~~l~frv 166 (371)
T 3ivf_A 87 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDDELNWLDHGRTLREQGVEEHETLLLRR 166 (371)
T ss_dssp EEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEECCC----------CCCTTSBTGGGTCCTTCEEEEEE
T ss_pred EEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEEEecccccchHHHHHhcCchhHhhCCCCCceEEEEE
Confidence 5778899999999999999999999999999999754 445665532 134556777777766667777655
Q ss_pred E
Q 032678 72 R 72 (136)
Q Consensus 72 r 72 (136)
+
T Consensus 167 K 167 (371)
T 3ivf_A 167 K 167 (371)
T ss_dssp C
T ss_pred E
Confidence 5
No 152
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=90.95 E-value=2.3 Score=27.95 Aligned_cols=71 Identities=24% Similarity=0.296 Sum_probs=55.1
Q ss_pred EEEEEeCCC---CEEEEEecCCCcHHHHHHHHhhhhCCCC--CCeEEEeCCE---EccCCccccccccCCCCEEEEEEE
Q 032678 2 QIFVKTLTG---KTITLEVESSDTIDNVKAKIQDKEGIPP--DQQRLIFAGK---QLEDGRTLADYNIQKESTLHLVLR 72 (136)
Q Consensus 2 qI~Vk~~~g---~~~~i~v~~~~TV~~LK~~I~~~~gip~--~~qrLi~~Gk---~L~D~~tL~~ygI~~gstI~l~~r 72 (136)
.|+|...+. ...+++|..+.-|+.+..++-++.+++. ++--|..-.+ .|.-..||..|||+.++.+++...
T Consensus 21 ~V~V~d~~~~~~~~~~lrV~GdlHIGGvmlklVEki~i~~dWSDhaLWW~~k~~WLlkt~~tLDkygiqADa~L~ftp~ 99 (102)
T 2kmc_A 21 VVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMNIAQDWSDYALWWEQKRCWLLKTHWTLDKCGVQADANLLFTPQ 99 (102)
T ss_dssp EEEEECTTSSCEEEEEEEECSCCBHHHHHHHHHHHHCCSSCCSSEEEEETTTTEEECCTTSBHHHHTCCTTSCEEEEEC
T ss_pred EEEEecCCcccCccEEEEEeeccccchhhhhhhhhcccccchHHhhhhhhhhchhhhhhhhhhhhhceeeeeeeeccCC
Confidence 577877554 5678999999999999999987776643 5666654332 677888999999999999988754
No 153
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=90.76 E-value=0.53 Score=32.35 Aligned_cols=56 Identities=23% Similarity=0.357 Sum_probs=39.0
Q ss_pred EEEecC----CCcHHHHHHHHhhhhCCCCCCeEEEe--CCEEc-----cC--CccccccccCCCCEEEEE
Q 032678 14 TLEVES----SDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQL-----ED--GRTLADYNIQKESTLHLV 70 (136)
Q Consensus 14 ~i~v~~----~~TV~~LK~~I~~~~gip~~~qrLi~--~Gk~L-----~D--~~tL~~ygI~~gstI~l~ 70 (136)
.+.|++ ..|+.+|-+.+..+.|.+. +..+.- ..+.| +| +++|+++|+++|+.|.+.
T Consensus 9 vl~v~~~dl~~~TL~dLV~~l~~~~gy~~-eiSV~~~~~~rLLyD~DfDDnl~k~L~dLgv~~gsfLtv~ 77 (127)
T 3onh_A 9 VIKLSSDCLNKMKLSDFVVLIREKYSYPQ-DISLLDASNQRLLFDYDFEDLNDRTLSEINLGNGSIILFS 77 (127)
T ss_dssp EEEECHHHHHHCBHHHHHHHHHHHHTCCS-SEEEEETTTTEEEEETTBCTTTTSBTTTTTCCTTCEEEEE
T ss_pred EEEeCcccccccCHHHHHHHHHHhcCCCC-cEEEEecCCCCeEeCCCccccccCcHHHcCcCCCcEEEEE
Confidence 355654 4799999988988888753 444431 22333 22 589999999999999876
No 154
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=90.57 E-value=1.4 Score=37.84 Aligned_cols=65 Identities=32% Similarity=0.537 Sum_probs=44.5
Q ss_pred CEEEEEecCCCcHHHHHHHHhhh--hCCC------CCCeEEEe----CCE-EccCC-------------ccccccccCCC
Q 032678 11 KTITLEVESSDTIDNVKAKIQDK--EGIP------PDQQRLIF----AGK-QLEDG-------------RTLADYNIQKE 64 (136)
Q Consensus 11 ~~~~i~v~~~~TV~~LK~~I~~~--~gip------~~~qrLi~----~Gk-~L~D~-------------~tL~~ygI~~g 64 (136)
..+.+.|-..+||.++|++|-+. .|+| +++..|-+ .|+ .|.|. .||++|+|.+|
T Consensus 274 ~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 353 (644)
T 3hm6_X 274 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG 353 (644)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBTTTTTCCTT
T ss_pred CceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCccceecCcceeecchhhcCCCCC
Confidence 34778888999999999999754 2333 34455543 233 35542 36999999999
Q ss_pred CEEEEEEEecC
Q 032678 65 STLHLVLRLRG 75 (136)
Q Consensus 65 stI~l~~r~~g 75 (136)
++|.++.+...
T Consensus 354 a~v~L~p~~~~ 364 (644)
T 3hm6_X 354 ATVALVPCLTK 364 (644)
T ss_dssp CEEEEEEC---
T ss_pred cEEEEEecccc
Confidence 99998876533
No 155
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=90.56 E-value=0.11 Score=34.74 Aligned_cols=75 Identities=16% Similarity=0.317 Sum_probs=44.7
Q ss_pred CEEEEEeCC------CCEEEEEecC----CCcHHHHHHHHhhhhCCCCCCeEEEe-CC--E------EccCCccc-----
Q 032678 1 MQIFVKTLT------GKTITLEVES----SDTIDNVKAKIQDKEGIPPDQQRLIF-AG--K------QLEDGRTL----- 56 (136)
Q Consensus 1 MqI~Vk~~~------g~~~~i~v~~----~~TV~~LK~~I~~~~gip~~~qrLi~-~G--k------~L~D~~tL----- 56 (136)
|+|.|+... |+...++++. ..||.+|-+.+.+.. +..+.+|+- +| . .|-++...
T Consensus 5 m~v~V~f~g~l~~l~g~~~~v~l~~~~g~~~TV~dLl~~L~~~~--~~~r~~lf~~~g~~~lrpgIlVLVNg~d~e~l~g 82 (110)
T 2k9x_A 5 NHITVQFAGGCELLFAKQTSLQLDGVVPTGTNLNGLVQLLKTNY--VKERPDLLVDQTGQTLRPGILVLVNSCDAEVVGG 82 (110)
T ss_dssp SCCEEEEESSCGGGTTSCSEECCCCSCGGGCCHHHHHHHHTTTT--CCSCHHHHBCSSSSSBCTTEEEEESSSBHHHHTS
T ss_pred cEEEEEEEecHHHHhCCeEEEEeCCcCCCCccHHHHHHHHHHHc--cccchhhEecCCCcccCCCeEEEECCeeeeccCC
Confidence 567777553 4555677763 259999999988875 222333321 22 1 23233322
Q ss_pred cccccCCCCEEEEEEEecCCc
Q 032678 57 ADYNIQKESTLHLVLRLRGGI 77 (136)
Q Consensus 57 ~~ygI~~gstI~l~~r~~gG~ 77 (136)
.++-+++|++|.++..+-||-
T Consensus 83 ldt~L~dgD~V~fistlhg~~ 103 (110)
T 2k9x_A 83 MDYVLNDGDTVEFISTLHGGL 103 (110)
T ss_dssp SCCCCCSSCEEEEEECCCCC-
T ss_pred cccCCCCcCEEEEeCCCcccc
Confidence 246689999999887777773
No 156
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=90.39 E-value=1.6 Score=28.05 Aligned_cols=72 Identities=14% Similarity=0.303 Sum_probs=44.5
Q ss_pred CEEEEEeCC------C-CEEEEEecCCCcHHHHHHHHhhhhC-CCC---------CCe-------EEEeCCEEccCCccc
Q 032678 1 MQIFVKTLT------G-KTITLEVESSDTIDNVKAKIQDKEG-IPP---------DQQ-------RLIFAGKQLEDGRTL 56 (136)
Q Consensus 1 MqI~Vk~~~------g-~~~~i~v~~~~TV~~LK~~I~~~~g-ip~---------~~q-------rLi~~Gk~L~D~~tL 56 (136)
|+|+|+... | +..++ + ..||.+|.+.+..... +.. ... .+..+|+.......
T Consensus 4 m~v~V~~fa~lr~~~g~~~~~l--~-~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~~~- 79 (99)
T 2l52_A 4 AEVKVKLFANLREAAGTPELPL--S-GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGNNIRHLEG- 79 (99)
T ss_dssp CEEEEEECTHHHHHHSSSEEEE--E-CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGTTS-
T ss_pred eEEEEEEeHHHHHHhCCCeEEE--e-CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCEEccccCC-
Confidence 678887663 3 34444 4 5899999999987641 111 012 56677776532211
Q ss_pred cccccCCCCEEEEEEEecCC
Q 032678 57 ADYNIQKESTLHLVLRLRGG 76 (136)
Q Consensus 57 ~~ygI~~gstI~l~~r~~gG 76 (136)
.+.-+++|++|.++.-..||
T Consensus 80 ~~~~L~~gD~V~i~ppv~GG 99 (99)
T 2l52_A 80 LETLLKDSDEIGILPPVSGG 99 (99)
T ss_dssp TTSCCCTTEEEEEECCCSCC
T ss_pred CCCCCCCCCEEEEECCCCCC
Confidence 23357889999988766665
No 157
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=89.82 E-value=1.4 Score=27.30 Aligned_cols=62 Identities=13% Similarity=0.254 Sum_probs=40.5
Q ss_pred EEEecCCCcHHHHHHHHhhhhC------C-----CCCCeEEEeCCEEccCCccccccccCCCCEEEEEEEecCC
Q 032678 14 TLEVESSDTIDNVKAKIQDKEG------I-----PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (136)
Q Consensus 14 ~i~v~~~~TV~~LK~~I~~~~g------i-----p~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~gG 76 (136)
.++++...||.+|.+.+..... + ......+..+|+...... -.+.-+++|++|.++.-..||
T Consensus 18 ~~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~~-~~~~~l~~gD~V~i~ppv~GG 90 (90)
T 2g1e_A 18 EETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSMK-GLDTEIKDDDKIDLFPPVAGG 90 (90)
T ss_dssp EEEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGTC-SSSCBCCTTCEEEEECCTTCC
T ss_pred EEEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEccccC-CCCcCCCCCCEEEEeCCCCCC
Confidence 3456666899999999987641 0 013456778888665221 123457889999987766665
No 158
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=89.71 E-value=1.7 Score=36.68 Aligned_cols=71 Identities=15% Similarity=0.274 Sum_probs=52.9
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhCCCC-CCeEEEeC---C--EEccCCccccccccCCCCEEEEEEE
Q 032678 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFA---G--KQLEDGRTLADYNIQKESTLHLVLR 72 (136)
Q Consensus 1 MqI~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~-~~qrLi~~---G--k~L~D~~tL~~ygI~~gstI~l~~r 72 (136)
|.+.|..++| ++.+.+++++|+.+|-..|....|+.. +..-|.|. | .-|+.++++.+.++..+....+.++
T Consensus 5 i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~~~~~L~FR 81 (575)
T 2i1j_A 5 MNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKENPLQFKFR 81 (575)
T ss_dssp EEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCCSSEEEEEE
T ss_pred EEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcCCCCccceeEEEEecCcchhHhhccccHHHhcccCCCCeEEEEE
Confidence 3578888898 778999999999999999999999854 34566552 2 2466778888877766665555444
No 159
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=89.69 E-value=1.4 Score=26.19 Aligned_cols=62 Identities=11% Similarity=0.090 Sum_probs=41.1
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeCCEEccCCccccccccCCCCEEEEEE
Q 032678 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (136)
Q Consensus 1 MqI~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~ 71 (136)
|++.|...+|+. .+++...|+.+|-+.+....+ ....-...+|+..+-+. -+++|+.|.++-
T Consensus 1 m~i~i~~p~g~~--~~~~~g~T~~dla~~i~~~l~--~~~vaa~vNg~lvdl~~-----~L~~~~~Veivt 62 (73)
T 2kmm_A 1 MEVMVFTPKGEI--KRLPQGATALDFAYSLHSDLG--DHCIGAKVNHKLVPLSY-----VLNSGDQVEVLS 62 (73)
T ss_dssp CCEEEECTTCCE--EEECTTCBHHHHHHHHCSHHH--HTEEEEEETTEECCTTC-----BCCSSSBEEEEE
T ss_pred CeEEEEcCCCCE--EEcCCCCcHHHHHHHHhhccc--cceEEEEECCEEeCCCc-----CcCCCCEEEEEE
Confidence 788998878886 566778999999888744321 12222346888765543 445688887764
No 160
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=89.62 E-value=1.5 Score=33.52 Aligned_cols=72 Identities=10% Similarity=0.038 Sum_probs=51.9
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhCCCC-CCeEEEeC---CE--EccCCccccccccCCCCEEEEEEE
Q 032678 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFA---GK--QLEDGRTLADYNIQKESTLHLVLR 72 (136)
Q Consensus 1 MqI~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~-~~qrLi~~---Gk--~L~D~~tL~~ygI~~gstI~l~~r 72 (136)
|.+.|..++|....+++++++|+.+|-+.|.++.|+.. +..-|.+. |. -|+.++.+.+.......++++.++
T Consensus 18 ~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~k~i~~q~~~~~~~l~frvk 95 (296)
T 3qij_A 18 GHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAKEIKKQVRGVPWNFTFNVK 95 (296)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEEEEETTEEEECCTTSBHHHHC---CCEEEEEES
T ss_pred EEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEEEcCCCccchhccchhHHHhcCCCCcEEEEEEE
Confidence 46889999999999999999999999999999999864 33456543 22 466677777654333445655554
No 161
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=88.51 E-value=0.1 Score=32.35 Aligned_cols=54 Identities=9% Similarity=0.214 Sum_probs=39.0
Q ss_pred EEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeCCEEccCCccccccccCCCCEEEEEEEecCC
Q 032678 14 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (136)
Q Consensus 14 ~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~gG 76 (136)
.+++++..||.+|.+.+. +++....+..+|+..+.+ .-+++|++|.++.-..||
T Consensus 24 ~~~~~~~~Tv~dLl~~L~----~~~~~v~VavNg~~v~~~-----~~L~dGD~V~i~ppv~GG 77 (77)
T 1rws_A 24 EIEWREGMKVRDILRAVG----FNTESAIAKVNGKVVLED-----DEVKDGDFVEVIPVVSGG 77 (77)
T ss_dssp CCCCCSSCCHHHHHHTTT----CSSCSSCEEETTEEECSS-----SCCCSSCCCBCSCCCCCC
T ss_pred EEECCCCCcHHHHHHHhC----CCCcCEEEEECCEECCCC-----CCcCCCCEEEEEcccccC
Confidence 345667789999988764 566666788899988765 346778988876555554
No 162
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=88.27 E-value=2.2 Score=33.24 Aligned_cols=51 Identities=20% Similarity=0.309 Sum_probs=40.3
Q ss_pred CEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeCC-EEc-cCCcccccccc
Q 032678 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG-KQL-EDGRTLADYNI 61 (136)
Q Consensus 11 ~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~G-k~L-~D~~tL~~ygI 61 (136)
....+.+.+..|+.++++.+++.++++++.|.|++.+ ... +.......+.-
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~~~~~~~~~~~~~~~~~~ 374 (396)
T 4eut_A 322 TAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPK 374 (396)
T ss_dssp EEEEEEECTTCBHHHHHHHHHHHHCCCSTTEEEESSSSEECCCSSCBTTSSCC
T ss_pred eEEEEEcCchhHHHHHHHHHHHhcCCChhhhHHHhcCCCCCCCCCCccccCCC
Confidence 4556788899999999999999999999999999998 333 33445555543
No 163
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=87.85 E-value=0.51 Score=39.48 Aligned_cols=33 Identities=21% Similarity=0.340 Sum_probs=30.5
Q ss_pred EEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEe
Q 032678 13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 45 (136)
Q Consensus 13 ~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 45 (136)
..++|..++|+.+||+.|++..|+|+++|||+.
T Consensus 38 ~~~rv~k~~~~~~l~~~va~~lg~~~~~~RlW~ 70 (530)
T 2ylm_A 38 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWP 70 (530)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHTSCGGGEEEEE
T ss_pred ceEEEcCcCCHHHHHHHHHHHhCcCcccEEEEE
Confidence 367899999999999999999999999999975
No 164
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=85.98 E-value=4.7 Score=26.60 Aligned_cols=67 Identities=10% Similarity=0.192 Sum_probs=48.3
Q ss_pred EEeCCCCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEE---eCCE--EccCCc--cccccccCCCCEEEEEEEe
Q 032678 5 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGK--QLEDGR--TLADYNIQKESTLHLVLRL 73 (136)
Q Consensus 5 Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi---~~Gk--~L~D~~--tL~~ygI~~gstI~l~~r~ 73 (136)
|-..+....++.+..+.|+.+++..++++.+...+++.|+ ++|. .|.++. ....+ .-...|++..+-
T Consensus 14 Vy~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~~e~l~Lv~v~ssGEk~~lqp~d~si~tsL--~~NgRLfvc~kd 87 (104)
T 1wgy_A 14 VYITEHSYVSVKAKVSSIAQEILKVVAEKIQYAEEDLALVAITFSGEKHELQPNDLVISKSL--EASGRIYVYRKD 87 (104)
T ss_dssp EECSSSCEEEECCCTTCBSHHHHHHHHHHHTSCGGGEEEEEECSSCCCCBCCTTSBSSCCSS--CSSCEEEEEECC
T ss_pred EEeccCceEEEEEeccchHHHHHHHHHHHhcCCccceEEEEEccCCcEeecCCcceEEEeec--cccceEEEeehH
Confidence 3345667788899999999999999999999877788886 6776 344433 23333 346788877663
No 165
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=85.73 E-value=0.75 Score=39.62 Aligned_cols=50 Identities=30% Similarity=0.569 Sum_probs=40.3
Q ss_pred CCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeCCE-EccCCcccccc
Q 032678 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK-QLEDGRTLADY 59 (136)
Q Consensus 10 g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk-~L~D~~tL~~y 59 (136)
.+...+.+.++.|+.+++..|++.+|++++.|.+++.+. .++.......|
T Consensus 321 ~~~~~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~~~~~~~p~~~~~~~ 371 (676)
T 3qa8_A 321 GRVHTYPVTENENLQNLKSWLQQDTGIPEEEQELLQASGLALNSAQPLTQY 371 (676)
T ss_dssp SCCCEEECCTTCCHHHHHHHHHTTSCCCSTTCEEESSSSCCCCTTSCGGGS
T ss_pred cccceeecCCCccHHHHHHHHHHHhCCCHHHHHHHhccCCCCCCCcchhhh
Confidence 455678899999999999999999999999999998654 55555555544
No 166
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=84.75 E-value=3.1 Score=26.50 Aligned_cols=37 Identities=16% Similarity=0.183 Sum_probs=29.6
Q ss_pred CCCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEE-eCC
Q 032678 9 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAG 47 (136)
Q Consensus 9 ~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi-~~G 47 (136)
++-.+.+.|+++.+..+|+.+|..+..+ +++.++ |++
T Consensus 20 ~DDIiAIrvP~di~~~~L~dKi~~RLk~--~~~~l~~ykd 57 (85)
T 1ip9_A 20 KDDIFALMLKGDTTYKELRSKIAPRIDT--DNFKLQTKLF 57 (85)
T ss_dssp TTCCEEEEECSCCCHHHHHHHHHHHHTS--SCEEEEECCS
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhcc--cceEEEEecC
Confidence 4568899999999999999999999987 344444 443
No 167
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=84.09 E-value=2.6 Score=27.65 Aligned_cols=38 Identities=18% Similarity=0.209 Sum_probs=32.4
Q ss_pred EEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhCCCCCC
Q 032678 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 40 (136)
Q Consensus 3 I~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~ 40 (136)
|.|-..+|....+.|++.+|+.++-+.+..+.+...+.
T Consensus 12 vkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~~~ 49 (100)
T 1wgr_A 12 VKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSDE 49 (100)
T ss_dssp EEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCCCC
T ss_pred EEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCCCCC
Confidence 45566799999999999999999999999998865443
No 168
>3u52_E Phenol hydroxylase component PHO; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_E* 2inp_E
Probab=81.33 E-value=9.3 Score=25.78 Aligned_cols=59 Identities=14% Similarity=0.169 Sum_probs=46.5
Q ss_pred EEEEEecCCCcHHHHHHHHhhh--------hCCCCCCeEEEeCCEEcc--CCccccccccCCCCEEEEE
Q 032678 12 TITLEVESSDTIDNVKAKIQDK--------EGIPPDQQRLIFAGKQLE--DGRTLADYNIQKESTLHLV 70 (136)
Q Consensus 12 ~~~i~v~~~~TV~~LK~~I~~~--------~gip~~~qrLi~~Gk~L~--D~~tL~~ygI~~gstI~l~ 70 (136)
.+.+-++|+++.++|-+++-.- ..|+.+.-.+..+|+... .+++|.+.|+..-|.|.+.
T Consensus 39 p~~~p~pP~mpFg~lv~~vl~~~~~~hPDfa~idws~v~W~l~g~pftPD~~kSLaenG~~HKs~lrf~ 107 (119)
T 3u52_E 39 PFALLVQPGMTFSALVDEILKPATAAHPDSAKADFLNAEWLLNDEPFTPKADASLKEQGIDHKSMLTVT 107 (119)
T ss_dssp CEEEEECTTSBHHHHHHHTHHHHTTTSTTGGGCCTTSSEEEETTEEECCCTTSBTTTTTCCTTEEEEEE
T ss_pred ceeecCCCCCCHHHHHHHhcchhhhcCCccccCCcchheEEECCccCCCChhhhHHHcCCCchheEEEe
Confidence 3678899999999998887432 235556667889999774 4789999999999988765
No 169
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=76.12 E-value=2.7 Score=27.48 Aligned_cols=28 Identities=25% Similarity=0.204 Sum_probs=25.0
Q ss_pred CCEEEEEecCCCcHHHHHHHHhhhhCCC
Q 032678 10 GKTITLEVESSDTIDNVKAKIQDKEGIP 37 (136)
Q Consensus 10 g~~~~i~v~~~~TV~~LK~~I~~~~gip 37 (136)
+..+.+.|+++.+..+|..+|.++.+++
T Consensus 22 ~d~~~i~V~~~i~f~~L~~kI~~Kl~~~ 49 (98)
T 1q1o_A 22 SEIFTLLVEKVWNFDDLIMAINSKISNT 49 (98)
T ss_dssp CEEEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred CcEEEEEecCCCCHHHHHHHHHHHHcCC
Confidence 4568899999999999999999998875
No 170
>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.6 PDB: 1wxs_A 1l7y_A
Probab=74.66 E-value=13 Score=23.56 Aligned_cols=64 Identities=20% Similarity=0.261 Sum_probs=51.4
Q ss_pred EEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeC-CEEccCCccccccccCCCCEEEEEEEecCC
Q 032678 13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-GKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (136)
Q Consensus 13 ~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~-Gk~L~D~~tL~~ygI~~gstI~l~~r~~gG 76 (136)
..+.|..+.....+-.-.++++++|+..--++-+ |--+...++-...=++.|+.+.++.|-+-|
T Consensus 26 kvlsVPE~~PftAVlkfaaEeF~vp~~TsAiiT~dGiGInP~QtAGnvFlKhGseLrlIPRDRVG 90 (92)
T 1j0g_A 26 KVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRIIPRDRVG 90 (92)
T ss_dssp EEEEEETTSBHHHHHHHHHHHTTCCSSSEEEECTTSCCCCCSSBHHHHHHHTCSEEEEEECCSSC
T ss_pred eEEecCccCchHHHHHHHHHHcCCCccceEEEecCCcccChhhccchhhhhcCceeEeccccccc
Confidence 3468888888888888889999999988777754 556667778777778999999999987765
No 171
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=74.01 E-value=14 Score=23.35 Aligned_cols=59 Identities=15% Similarity=0.242 Sum_probs=47.6
Q ss_pred EEEEecCCCcHHHHHHHHhhh-hC--CC--CCCeEEEeCCEE--ccCCccccccccCCCCEEEEEE
Q 032678 13 ITLEVESSDTIDNVKAKIQDK-EG--IP--PDQQRLIFAGKQ--LEDGRTLADYNIQKESTLHLVL 71 (136)
Q Consensus 13 ~~i~v~~~~TV~~LK~~I~~~-~g--ip--~~~qrLi~~Gk~--L~D~~tL~~ygI~~gstI~l~~ 71 (136)
.-+.|+..+|+.++-++++.. .| ++ |.-.+...+|.. +.++.|+++-||++-+.|.+..
T Consensus 17 ~Lv~VDt~dtmdqVA~k~A~h~VGrrv~p~pg~lrVr~~G~~~~~Pr~mtVaeaGl~Pme~vev~~ 82 (84)
T 3ge3_C 17 QLVVVDLNDSMDQVAEKVAYHCVNRRVAPREGVMRVRKHRSTELFPRDMTIAESGLNPTEVIDVVF 82 (84)
T ss_dssp EEEEEETTCBHHHHHHHHHHTTBTTTBCCCSSCEEEEETTCSCBCCTTCBHHHHCCCTTCEEEEEE
T ss_pred EEEEecCCCcHHHHHHHHhhhhcceeeCCCCCcEEEEECCCcccCCCCCEeeccCCCcceEEEEEE
Confidence 456899999999999999765 33 22 235678889986 9999999999999999988764
No 172
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=73.45 E-value=15 Score=23.25 Aligned_cols=59 Identities=20% Similarity=0.350 Sum_probs=47.3
Q ss_pred EEEEecCCCcHHHHHHHHhhhh-C--C--CCC-CeEEEeCC--EEccCCccccccccCCCCEEEEEE
Q 032678 13 ITLEVESSDTIDNVKAKIQDKE-G--I--PPD-QQRLIFAG--KQLEDGRTLADYNIQKESTLHLVL 71 (136)
Q Consensus 13 ~~i~v~~~~TV~~LK~~I~~~~-g--i--p~~-~qrLi~~G--k~L~D~~tL~~ygI~~gstI~l~~ 71 (136)
.-+.|+.++|+.++-++++... | + .|. -.+..++| +.+..+.|+++-||.+-..|.+..
T Consensus 15 ~LV~VDt~dTmdqVA~kvA~HsVGrRV~p~p~~~~rVr~~G~~~~~pr~~tvae~gl~P~e~vev~~ 81 (83)
T 2inc_C 15 QLVPVDTEDTMDQVAEKCAYHSINRRVHPQPEKILRVRRHEDGTLFPRGMIVSDAGLRPTETLDIIF 81 (83)
T ss_dssp EEEEECTTCBHHHHHHHHHTTTBTTTBCCCTTSEEEEEETTTCCEECTTCBGGGSCCCTTCEEEEEE
T ss_pred EEEEecCCCcHHHHHHHHhhhhcceecCCCCCCeEEEEecCCccCCCCCCEeeccCCCCceEEEEEE
Confidence 3468999999999999997652 3 3 222 46777888 899999999999999999888764
No 173
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=71.81 E-value=6.5 Score=32.53 Aligned_cols=45 Identities=18% Similarity=0.135 Sum_probs=38.0
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhCCCC--CCeEEEe
Q 032678 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP--DQQRLIF 45 (136)
Q Consensus 1 MqI~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~--~~qrLi~ 45 (136)
|.+.|..++|....+.+++++|+.+|-+.|..+.|+.. +..-|.+
T Consensus 217 ~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lgL~e~~~~FgL~~ 263 (555)
T 3au4_A 217 MTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAMEDSRNMFALFE 263 (555)
T ss_dssp EEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCTTCCSEEEEEE
T ss_pred cceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcCCCCCCCceEEEE
Confidence 35788889999999999999999999999999999964 3445544
No 174
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=69.67 E-value=14 Score=23.72 Aligned_cols=40 Identities=28% Similarity=0.346 Sum_probs=33.8
Q ss_pred CCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeE-EEeCCEE
Q 032678 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR-LIFAGKQ 49 (136)
Q Consensus 10 g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qr-Li~~Gk~ 49 (136)
...+.+.|++..|=.++|+.++..+++.+.... +...|+.
T Consensus 27 ~n~~~F~V~~~AnK~eIK~AVE~lf~VkV~~VnT~~~~gK~ 67 (93)
T 3r8s_T 27 SNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKV 67 (93)
T ss_dssp TSEEEEEECSSCCHHHHHHHHHHHSCCCCCEEEEEEECCCB
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCceEEEEEEEeCCce
Confidence 368999999999999999999999999987764 4566653
No 175
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=68.51 E-value=4.7 Score=33.59 Aligned_cols=70 Identities=11% Similarity=0.256 Sum_probs=53.0
Q ss_pred EEEEeCC--CCEEE----EEecCCCcHHHHHHHHhhhhCCCCCCeEEEeC------CEEcc-CCcccccc--ccCCCCEE
Q 032678 3 IFVKTLT--GKTIT----LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA------GKQLE-DGRTLADY--NIQKESTL 67 (136)
Q Consensus 3 I~Vk~~~--g~~~~----i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~------Gk~L~-D~~tL~~y--gI~~gstI 67 (136)
|++|-.+ .+++. +.|+.+++|++|-..|.+..|+|++.--.+|. -..|+ .+.|+.+. ++++|+.|
T Consensus 133 lFlK~yDp~~q~L~~~G~~~v~~~~kv~~l~~~i~~~~g~p~dt~l~lyEEi~~~~ie~l~~~~~t~~~~~~eL~~GdII 212 (530)
T 2ylm_A 133 LFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTERIQDYDVSLDKALDELMDGDII 212 (530)
T ss_dssp EEEEEEETTTTEEEEEEEEEEETTCBGGGTHHHHHHHHTCCTTCCEEEEEEEETTEEEECCCSSSBHHHHSTTCCTTEEE
T ss_pred EEEEeeCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEecCCCceeEcccccccHHHHHhcccCCCEE
Confidence 5556443 33433 57889999999999999999999986655553 23567 47799999 99999998
Q ss_pred EEEEE
Q 032678 68 HLVLR 72 (136)
Q Consensus 68 ~l~~r 72 (136)
.+-..
T Consensus 213 ~fQ~~ 217 (530)
T 2ylm_A 213 VFQKD 217 (530)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 77654
No 176
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.41 E-value=16 Score=23.44 Aligned_cols=50 Identities=14% Similarity=0.246 Sum_probs=36.4
Q ss_pred CcHHHHHHHHhhhhCCCCCCeEEEe--CCEEccCCccccccccCCCCEEEEEEEe
Q 032678 21 DTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLADYNIQKESTLHLVLRL 73 (136)
Q Consensus 21 ~TV~~LK~~I~~~~gip~~~qrLi~--~Gk~L~D~~tL~~ygI~~gstI~l~~r~ 73 (136)
.++.+|+.+...+.+++...-+|+. +|..++|+.-+..+ +..|+.+++..
T Consensus 28 ~sL~EL~~K~~~~l~l~~~~~~lvLeeDGT~VddEeyF~tL---p~nT~lmvL~~ 79 (91)
T 2eel_A 28 SSLQELISKTLDALVIATGLVTLVLEEDGTVVDTEEFFQTL---GDNTHFMILEK 79 (91)
T ss_dssp SSHHHHHHHHHHHTTCSSSCEEEEETTTCCBCCCHHHHTTS---CSSEEEEEEET
T ss_pred CCHHHHHHHHHHHhcCCCCCcEEEEeeCCcEEechhhhhhC---CCCCEEEEEcC
Confidence 5799999999999999766677765 58888776544443 25677676653
No 177
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=67.99 E-value=14 Score=27.28 Aligned_cols=38 Identities=16% Similarity=0.113 Sum_probs=32.2
Q ss_pred EEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhCCCCCC
Q 032678 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 40 (136)
Q Consensus 3 I~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~ 40 (136)
|.|-..+|.+..+.|++++|..++-+.+..+.+++.+.
T Consensus 37 v~v~~~d~~~k~i~v~~~~ta~ev~~~L~~k~~~~~~~ 74 (291)
T 3tca_A 37 VKVHMDDSSTKSLMVDERQLARDVLDNLFEKTHCDCNV 74 (291)
T ss_dssp EEEECTTSCEEEEEEETTCBHHHHHHHHHHHHCCCCCT
T ss_pred EEEEcCCCceEEEEeCCCCcHHHHHHHHHHHhCCCCCC
Confidence 44556788899999999999999999999999986643
No 178
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=67.42 E-value=16 Score=27.62 Aligned_cols=55 Identities=16% Similarity=0.138 Sum_probs=35.5
Q ss_pred EEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeC-------CEEccCCcccc
Q 032678 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-------GKQLEDGRTLA 57 (136)
Q Consensus 3 I~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~-------Gk~L~D~~tL~ 57 (136)
|.|-..+|....+.|++++|+++|-+.+..+.+++.+.-..++. -+.|+|...+-
T Consensus 11 vkv~~~d~ss~~l~V~~~mta~ev~~~l~~k~~~~~~~~W~l~E~~~~l~lER~ledhE~V~ 72 (256)
T 3hk0_A 11 VKVFSEDGTSKVVEILADMTARDLCQLLVYKSHSVDDNSWTLVEHHPHLGLERCLEDHELVV 72 (256)
T ss_dssp EEEEETTSCEEEEEECTTCBHHHHHHHHHCCC-------EEEEEEETTTTEEEECCTTSBHH
T ss_pred EEEEecCCcEEEEEECCCCCHHHHHHHHHHhcCCCCCCCEEEEEECCCcccccccccchhHH
Confidence 45556789999999999999999999998887765444433331 24667765443
No 179
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=66.22 E-value=13 Score=28.54 Aligned_cols=56 Identities=20% Similarity=0.229 Sum_probs=39.3
Q ss_pred EEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeC-------CEEccCCccccc
Q 032678 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-------GKQLEDGRTLAD 58 (136)
Q Consensus 3 I~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~-------Gk~L~D~~tL~~ 58 (136)
|.|-..+|.+..+.|++++|+++|-+.+..+.+.+...-..++. -+.|.|...+.+
T Consensus 34 vkv~~~D~ss~~l~V~~~~TA~dv~~~L~~k~~~~~~~~W~L~E~~~~l~lER~ledhE~V~d 96 (281)
T 4gmv_A 34 IRVHMSDDSSKTMMVDERQTVRQVLDNLMDKSHCGYSLDWSLVETVSELQMERIFEDHENLVE 96 (281)
T ss_dssp EEEEETTSCEEEEEEETTCBHHHHHHHHHHHSCCCCCTTCEEEEEEGGGTEEEECCTTSBHHH
T ss_pred EEEEecCCCEEEEEECCCCcHHHHHHHHHHhcCCCCCCCeEEEEEcCCccceeccccchhHHH
Confidence 44556689999999999999999999999888765444333321 245666655433
No 180
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=65.43 E-value=9.8 Score=32.54 Aligned_cols=45 Identities=22% Similarity=0.207 Sum_probs=37.6
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhCCCC-CCeEEEe
Q 032678 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIF 45 (136)
Q Consensus 1 MqI~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~-~~qrLi~ 45 (136)
|.+.|..++|....+++++++|+.++-+.|..+.|+.. +..-|.+
T Consensus 264 i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL~e~~~FgL~~ 309 (655)
T 3pvl_A 264 IMLPVTFMDGTTKTLLTDSATTARELCNALADKISLKDRFGFSLYI 309 (655)
T ss_dssp EEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCSSCTTEEEEE
T ss_pred eEEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCCcccccceeEE
Confidence 45788899999999999999999999999999999743 4445544
No 181
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=64.51 E-value=14 Score=26.07 Aligned_cols=63 Identities=16% Similarity=0.252 Sum_probs=42.8
Q ss_pred EEEecCCCcHHHHHHHHhhhhC-CC---------CCCeEEEeCCEEccCCccccccccCCCCEEEEEEEecCCcc
Q 032678 14 TLEVESSDTIDNVKAKIQDKEG-IP---------PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGII 78 (136)
Q Consensus 14 ~i~v~~~~TV~~LK~~I~~~~g-ip---------~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~gG~~ 78 (136)
.++++. .||.+|.+.+..... +. .....+..||+......- .+.-+++|++|.++.-..||..
T Consensus 17 ~~ev~~-~TV~dLl~~L~~~~p~l~~~l~~~~~l~~~v~VaVNg~~v~~~~~-~dt~L~dGDeVai~PpVsGG~~ 89 (168)
T 1v8c_A 17 QLELPG-ATVGEVLENLVRAYPALKEELFEGEGLAERVSVFLEGRDVRYLQG-LSTPLSPGATLDLFPPVAGGGF 89 (168)
T ss_dssp EEECCC-SBHHHHHHHHHHHCGGGHHHHEETTEECTTCEEEETTEEGGGTTG-GGCBCCTTCEEEEECSCCSEEE
T ss_pred eEEECC-CcHHHHHHHHHhhChhhhhhhhcccccCCcEEEEECCEECCCcCC-CccCCCCCCEEEEECccccccc
Confidence 445665 899999999977631 10 233467788887765322 2345788999999888888854
No 182
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=64.21 E-value=13 Score=24.59 Aligned_cols=31 Identities=19% Similarity=0.209 Sum_probs=26.0
Q ss_pred EEEEeCCCCEEEEEecCCCcHHHHHHHHhhh
Q 032678 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDK 33 (136)
Q Consensus 3 I~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~ 33 (136)
|.+=.++|-.+.++++.+.|+.++|+.+.++
T Consensus 22 v~~LlPnGi~i~l~~~~~~tl~eiK~~lw~e 52 (108)
T 2v1y_A 22 VECLLPNGMIVTLECLREATLITIKHELFKE 52 (108)
T ss_dssp EEEECTTSCEEEEEEETTCBHHHHHHHHHHH
T ss_pred EEEEcCcEEEEEEEeeccccHHHHHHHHHHH
Confidence 3444568988999999999999999999776
No 183
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=63.94 E-value=12 Score=24.11 Aligned_cols=56 Identities=5% Similarity=0.054 Sum_probs=40.0
Q ss_pred CEEEEEecCCCcHHHHHHHHhhh---hCCCCCCeEEEeCCEEccCCccccccccCCCCEEEEEE
Q 032678 11 KTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (136)
Q Consensus 11 ~~~~i~v~~~~TV~~LK~~I~~~---~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~ 71 (136)
..+.+++.+..||.++-+...-. ..|..+...+-.+|+....+. -+++|+.|.++-
T Consensus 26 ~~~~~~v~~g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~~v~~d~-----~L~dGDRVEIyr 84 (97)
T 2hj1_A 26 YLKSFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIKLTD-----VLKEGDRIEIYR 84 (97)
T ss_dssp EEEEEEEETTCBHHHHHHHHTHHHHCTTCCTTTSEEEEEECSCCTTC-----BCCTTCEEEECC
T ss_pred EEEEEEcCCCCcHHHHHHHcCCCccCCcccccccEEEEcCEECCCCc-----cCCCCCEEEEEe
Confidence 35567899999999998887542 244555667778888776433 466799998863
No 184
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=63.68 E-value=15 Score=24.75 Aligned_cols=64 Identities=14% Similarity=0.210 Sum_probs=43.8
Q ss_pred eCCCCEEEEEecCCCcHHHHHHHHhhhhCCCCC------CeEEE---eCCE--EccCCc--cccccccCCCCEEEEEEE
Q 032678 7 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD------QQRLI---FAGK--QLEDGR--TLADYNIQKESTLHLVLR 72 (136)
Q Consensus 7 ~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~------~qrLi---~~Gk--~L~D~~--tL~~ygI~~gstI~l~~r 72 (136)
..+....++.+..+.|+.+++..++++.+...+ ++.|+ ++|. .|.++. ....++ -...|++..+
T Consensus 16 ~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~e~~~~~~~~l~Lv~V~ssGEk~vlqp~d~sv~tsL~--~NgRLfvc~k 92 (120)
T 2dhz_A 16 MPDHSYVTIRSRLSASVQDILGSVTEKLQYSEEPAGREDSLILVAVSSSGEKVLLQPTEDCVFTALG--INSHLFACTR 92 (120)
T ss_dssp CTTSCCCCEEECTTCCHHHHHHHHHHHSTTCSSTTSCCSCCEEEEEETTCCCEECCTTCSCHHHHSC--SSEEEEEECT
T ss_pred eccCceEEEEEeccccHHHHHHHHHHHhccccccccccCceEEEEEccCCcEeecCCcceEEEeecc--ccceEEEeeh
Confidence 345566778899999999999999999987543 67775 5776 444332 334444 3567777654
No 185
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=63.01 E-value=23 Score=21.73 Aligned_cols=61 Identities=15% Similarity=0.207 Sum_probs=41.0
Q ss_pred EEEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeCCEEccCCccccccccCCCCEEEEEE
Q 032678 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (136)
Q Consensus 2 qI~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~ 71 (136)
+|+|.+++|..+ +++...|+.++=..|....|- ...--..+|+..+-+. -+++|++|.++.
T Consensus 7 ~i~v~tP~G~~~--~lp~GaT~~D~A~~Ih~~lg~--~~v~AkVNG~~v~L~~-----~L~~gd~VeIit 67 (78)
T 3hvz_A 7 EVFVFTPKGDVI--SLPIGSTVIDFAYAIHSAVGN--RMIGAKVDGRIVPIDY-----KVKTGEIIDVLT 67 (78)
T ss_dssp EEEEECTTSCEE--EEETTCBHHHHHHHHCHHHHH--TEEEEEETTEEECTTC-----BCCTTCBEEEEE
T ss_pred eEEEECCCCCEE--EecCCCCHHHHHHHhhhhhhc--ceEEEEECCEEcCCCc-----ccCCCCEEEEEc
Confidence 578889999764 577788999998887655431 1122235777665433 456788888764
No 186
>2lgx_A Fermitin family homolog 2; kindlin, membrane, integrin activation, cell adhesion; NMR {Homo sapiens}
Probab=61.43 E-value=2.2 Score=28.50 Aligned_cols=61 Identities=25% Similarity=0.341 Sum_probs=46.1
Q ss_pred CEEEEEecCCCcHHHHHHHHhhhhCCCC--CCeEEEeCC---EEccCCccccccccCCCCEEEEEE
Q 032678 11 KTITLEVESSDTIDNVKAKIQDKEGIPP--DQQRLIFAG---KQLEDGRTLADYNIQKESTLHLVL 71 (136)
Q Consensus 11 ~~~~i~v~~~~TV~~LK~~I~~~~gip~--~~qrLi~~G---k~L~D~~tL~~ygI~~gstI~l~~ 71 (136)
...+++|..+.-|+.+..++-++.+++. ++--|.--. ..|.-..||..|||+.++.+++..
T Consensus 36 ~~~~lrV~GdlHIGGvmLkLVE~i~i~~dWSDhaLWWp~k~~WLlkt~~tLDk~giqADa~L~ftp 101 (112)
T 2lgx_A 36 RDVTLRVTGEVHIGGVMLKLVEKLDVKKDWSDHALWWEKKRTWLLKTHWTLDKYGIQADAKLQFTP 101 (112)
T ss_dssp BCCEECCCTTSCHHHHHHHHHHHCCSCCCSSSSBEEETTTTEEECCTTSCHHHHTCCTTCBBCBBC
T ss_pred ccEEEEEeeccccccchhhhhhhhcccccchHhhhhhhhhchhhhcchhhHhhhceeccccceecC
Confidence 6678889888999999999987766533 454454332 267778899999999999887653
No 187
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=60.23 E-value=16 Score=23.00 Aligned_cols=35 Identities=9% Similarity=0.214 Sum_probs=30.4
Q ss_pred CCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEE
Q 032678 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 44 (136)
Q Consensus 10 g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi 44 (136)
.+++.+.|++..|=.++|+.++..+++.+....-+
T Consensus 22 ~n~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~ 56 (85)
T 1vq8_S 22 QNKLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQ 56 (85)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCCceEEEee
Confidence 46899999999999999999999999988766443
No 188
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=59.47 E-value=31 Score=21.84 Aligned_cols=41 Identities=15% Similarity=0.156 Sum_probs=28.0
Q ss_pred EEEEeCCCC-EEEEEecC-CCcHHHHHHHHhhhhCCCCCCeEE
Q 032678 3 IFVKTLTGK-TITLEVES-SDTIDNVKAKIQDKEGIPPDQQRL 43 (136)
Q Consensus 3 I~Vk~~~g~-~~~i~v~~-~~TV~~LK~~I~~~~gip~~~qrL 43 (136)
|+-|....+ .-.+.++. ..+|.+||.+|..+.+.-..+.-|
T Consensus 9 V~YKFkS~k~~~~v~fdG~~Isv~dLKr~I~~~~kl~~~dfDL 51 (86)
T 2c7h_A 9 VHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKLKAADCDL 51 (86)
T ss_dssp EEEEETTCSSEEEEEESSSEEEHHHHHHHHHHHHTCCTTTEEE
T ss_pred EEEEEeecCCcceEEEcCCEEEHHHHHHHHHHHhCCCCCcccE
Confidence 555655554 34567764 579999999999888775444444
No 189
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=58.78 E-value=6.2 Score=24.51 Aligned_cols=36 Identities=19% Similarity=0.202 Sum_probs=28.1
Q ss_pred EEEEEecCCCcHHHHHHHHhhhhCCC-----CCCeEEEeCC
Q 032678 12 TITLEVESSDTIDNVKAKIQDKEGIP-----PDQQRLIFAG 47 (136)
Q Consensus 12 ~~~i~v~~~~TV~~LK~~I~~~~gip-----~~~qrLi~~G 47 (136)
.+.+.|+++.+..+|..+|..+.+.. ....+|-|.+
T Consensus 3 ~~~i~V~~~i~f~~L~~kI~~kl~~~~~~~~~~~~~lkYkD 43 (77)
T 1pqs_A 3 IFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQD 43 (77)
T ss_dssp EEEEECTTCCCSHHHHHHHHHHTTTTTSSCSCSTTCCEEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHcccccccccceeEEEEEc
Confidence 57889999999999999999999864 2344555543
No 190
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U
Probab=57.33 E-value=16 Score=23.47 Aligned_cols=36 Identities=22% Similarity=0.175 Sum_probs=31.0
Q ss_pred EEEEecCCCcHHHHHHHHhhhhCCCCCCeEE-EeCCE
Q 032678 13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRL-IFAGK 48 (136)
Q Consensus 13 ~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL-i~~Gk 48 (136)
+++.|++..|=.++|+.++..+++.+....- ...|+
T Consensus 25 y~F~V~~~anK~eIK~aVE~lf~VkV~~VNT~~~~gK 61 (95)
T 2zjr_Q 25 YSFWVSPKATKTEIKDAIQQAFGVRVIGISTMNVPGK 61 (95)
T ss_dssp CEEEECSSCTHHHHHHHHHHHHCCCCSEEEECCBCCC
T ss_pred EEEEEcCCCCHHHHHHHHHHHhCCCceEEEeEEeCCc
Confidence 8999999999999999999999999887754 35554
No 191
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=55.56 E-value=22 Score=22.45 Aligned_cols=35 Identities=11% Similarity=0.249 Sum_probs=30.4
Q ss_pred CCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEE
Q 032678 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 44 (136)
Q Consensus 10 g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi 44 (136)
..++.+.|++..+=.++|+.++..+++.+....-+
T Consensus 23 ~n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl 57 (86)
T 3j21_T 23 ENKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTL 57 (86)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEe
Confidence 46899999999999999999999999988766443
No 192
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=55.41 E-value=30 Score=23.08 Aligned_cols=58 Identities=12% Similarity=0.149 Sum_probs=39.3
Q ss_pred EEecCCCcHHHHHHHHhhhhCCCCCCe-EEEeCCEEccCCccccccc--c-CCCCEEEEEEE
Q 032678 15 LEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLADYN--I-QKESTLHLVLR 72 (136)
Q Consensus 15 i~v~~~~TV~~LK~~I~~~~gip~~~q-rLi~~Gk~L~D~~tL~~yg--I-~~gstI~l~~r 72 (136)
+-|+.+.|++++...|..+.++++++- -|..++....-+.++++.= - .++.-+++...
T Consensus 52 flVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~lY~~~kd~DGfLyv~Ys 113 (119)
T 3h9d_A 52 FLVPSDLTVGQFVSVLRKRVQLEAESALFVYTNDTVLPSSAQMADIYSKYKDEDGFLYMKYS 113 (119)
T ss_dssp EEEETTCBHHHHHHHHHHHHTCCTTSCCEEEETTEECCTTSBHHHHHHHHCCTTSCEEEEEE
T ss_pred EEcCCCCCHHHHHHHHHHHhCCCccceEEEEECCcCCCccchHHHHHHHcCCCCCeEEEEEe
Confidence 468899999999999999999988764 4444776545566665541 1 13445655543
No 193
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=54.12 E-value=21 Score=22.80 Aligned_cols=40 Identities=18% Similarity=0.158 Sum_probs=33.4
Q ss_pred CCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeE-EEeCCEE
Q 032678 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR-LIFAGKQ 49 (136)
Q Consensus 10 g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qr-Li~~Gk~ 49 (136)
...+.+.|++..|=.++|+.++..+++.+.... +...|+.
T Consensus 21 ~n~~~F~V~~~AnK~qIK~aVe~lf~VkV~~VnT~~~~gK~ 61 (92)
T 3tve_T 21 EGKYTFWVHPKATKTEIKNAVETAFKVKVVKVNTLHVRGKK 61 (92)
T ss_dssp TTEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEEECCCE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCceeeeeeeeeCCce
Confidence 378999999999999999999999999887664 4456653
No 194
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Probab=50.25 E-value=38 Score=29.19 Aligned_cols=59 Identities=10% Similarity=0.260 Sum_probs=40.5
Q ss_pred EEEEEecCCCcHHHHHHHHhhhhC--CCCC--------CeEEEeCCE--Ec----c--CCccccccccCCCCEEEEE
Q 032678 12 TITLEVESSDTIDNVKAKIQDKEG--IPPD--------QQRLIFAGK--QL----E--DGRTLADYNIQKESTLHLV 70 (136)
Q Consensus 12 ~~~i~v~~~~TV~~LK~~I~~~~g--ip~~--------~qrLi~~Gk--~L----~--D~~tL~~ygI~~gstI~l~ 70 (136)
...+.++++.|+.++-+.+..+.. +..- ..+++|... .| + -+++|+++|+.+|+.|.+.
T Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~ 789 (805)
T 2nvu_B 713 PQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 789 (805)
T ss_dssp CEEEEECTTSBHHHHHHHHHHCTTTCCSSCEEEEEETTEEEEEECCSSHHHHHHHGGGGGSBTTTTTCCTTCEEEEE
T ss_pred eEEEEECCcChHHHHHHHHHhhhccCcccceEEEEccCCCcEEEecCccchhhhhHhhhcCCHHHcCCCCCCEEEEE
Confidence 356788888999999998888643 3221 135666532 11 1 2578999999999998874
No 195
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=49.04 E-value=30 Score=23.46 Aligned_cols=59 Identities=10% Similarity=0.181 Sum_probs=40.1
Q ss_pred EEEecCCCcHHHHHHHHhhhhCCCCCCeEEE-eCCEEcc-CCccccccc--cC-CCCEEEEEEE
Q 032678 14 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLE-DGRTLADYN--IQ-KESTLHLVLR 72 (136)
Q Consensus 14 ~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi-~~Gk~L~-D~~tL~~yg--I~-~gstI~l~~r 72 (136)
.+-|+.+.|++++..-|.++.++++++--.+ |-+..+. .+.++++.= -+ ++.-+++...
T Consensus 56 KflVp~~~tv~qf~~~iRkrL~l~~~~alFl~~vn~~~p~~~~~m~~lY~~~kdeDGfLyv~Ys 119 (130)
T 2zjd_A 56 KFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYA 119 (130)
T ss_dssp EEEEETTCBHHHHHHHHHHHHTCCTTCCEEEEETTTEECCTTSBHHHHHHHHCCTTSCEEEEEE
T ss_pred EEEcCCCCcHHHHHHHHHHHhCCCCCceEEEEEECCccCCccchHHHHHHHhCCCCCEEEEEEe
Confidence 3468889999999999999999988776555 6555443 455665541 11 3456666543
No 196
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=47.70 E-value=33 Score=23.11 Aligned_cols=59 Identities=14% Similarity=0.155 Sum_probs=38.6
Q ss_pred EEEecCCCcHHHHHHHHhhhhCCCCCCeEEEe-CCEEccCCccccccc--cC-CCCEEEEEEE
Q 032678 14 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYN--IQ-KESTLHLVLR 72 (136)
Q Consensus 14 ~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~-~Gk~L~D~~tL~~yg--I~-~gstI~l~~r 72 (136)
.+-|+.+.||+++...|.++..+++++--.+| ++....-+.++++.= -+ ++.-+++...
T Consensus 56 KflVp~~~tv~qf~~~IRkrl~L~~~~alFl~Vnn~lPs~s~~m~~lY~~~kdeDGfLY~~Ys 118 (125)
T 3m95_A 56 KYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHHDEDFFLYIAFS 118 (125)
T ss_dssp EEEEETTSBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEEE
T ss_pred EEEcCCCCEeeeehhhhHhhcCCCccccEEEEECCccCCccchHHHHHHHcCCCCCeEEEEec
Confidence 35688999999999999999999887654444 554334455665431 12 3445655544
No 197
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=46.82 E-value=36 Score=22.19 Aligned_cols=46 Identities=13% Similarity=0.135 Sum_probs=32.5
Q ss_pred EEEecCCCcHHHHHHHHhhhhCCCCCCe-EEEeCCEEccCCcccccc
Q 032678 14 TLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLADY 59 (136)
Q Consensus 14 ~i~v~~~~TV~~LK~~I~~~~gip~~~q-rLi~~Gk~L~D~~tL~~y 59 (136)
.+-|+.+.|++++..-|..+.++++++- -|+.++....-+.++++.
T Consensus 47 KflVp~~~tv~~~~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~L 93 (110)
T 2r2q_A 47 KYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQL 93 (110)
T ss_dssp EEEEETTCBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHHH
T ss_pred EEEeCCCCcHHHHHHHHHHHhcCCCCCcEEEEECCEecCccChHHHH
Confidence 3467889999999999999999988764 444455443445566554
No 198
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0
Probab=46.23 E-value=28 Score=22.12 Aligned_cols=26 Identities=19% Similarity=0.266 Sum_probs=22.7
Q ss_pred EEEEEeCCCCEEEEEecCCCcHHHHH
Q 032678 2 QIFVKTLTGKTITLEVESSDTIDNVK 27 (136)
Q Consensus 2 qI~Vk~~~g~~~~i~v~~~~TV~~LK 27 (136)
+|++...+|...++++.+..|+.+.-
T Consensus 2 ~vt~~~~~G~~~~~~~~~g~tll~a~ 27 (104)
T 3lxf_A 2 AILVTTRDGTRTEIQAEPGLSLMEAL 27 (104)
T ss_dssp EEEEECTTSCEEEEECCTTSBHHHHH
T ss_pred EEEEEeCCCCEEEEEECCCChHHHHH
Confidence 68888899999999999999997754
No 199
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=45.56 E-value=40 Score=22.42 Aligned_cols=59 Identities=15% Similarity=0.203 Sum_probs=37.9
Q ss_pred EEEecCCCcHHHHHHHHhhhhCCCCCCeEEEe-CCEEccCCccccccc--c-CCCCEEEEEEE
Q 032678 14 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYN--I-QKESTLHLVLR 72 (136)
Q Consensus 14 ~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~-~Gk~L~D~~tL~~yg--I-~~gstI~l~~r 72 (136)
.+-|+.+.||+++...|.++.++++++--.+| ++....-+.++++.= - .++.-+++...
T Consensus 50 KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~lY~~~kdeDGfLyv~Ys 112 (118)
T 3rui_B 50 KYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAALMSAIYQEHKDKDGFLYVTYS 112 (118)
T ss_dssp EEEEETTSBHHHHHHHHHHHTTCCTTCCEEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEEE
T ss_pred eEEcCCCCCHHHHHHHHHHHhCcCCCccEEEEECCccCCccchHHHHHHHcCCCCCeEEEEEe
Confidence 35588999999999999999999886654444 554333455555431 1 23445555443
No 200
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=43.81 E-value=43 Score=22.07 Aligned_cols=59 Identities=14% Similarity=0.181 Sum_probs=39.3
Q ss_pred EEEecCCCcHHHHHHHHhhhhCCCCCCeEEEe-CCEEccCCccccccc--c-CCCCEEEEEEE
Q 032678 14 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYN--I-QKESTLHLVLR 72 (136)
Q Consensus 14 ~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~-~Gk~L~D~~tL~~yg--I-~~gstI~l~~r 72 (136)
.+-|+.+.|++++..-|..+.++++++--.+| ++.....+.++++.- - .++.-+++...
T Consensus 48 KflVp~~~tv~~f~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~LY~~~kd~DGfLyi~Ys 110 (117)
T 1eo6_A 48 KYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYS 110 (117)
T ss_dssp EEEEETTSBHHHHHHHHHHHHTCCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEEE
T ss_pred EEEcCCCCCHHHHHHhhHHhhcCCCCCcEEEEECCEecCccchHHHHHHHhCCCCCEEEEEEe
Confidence 34578899999999999999999887653444 554444455665541 1 23556776654
No 201
>1f2r_I Inhibitor of caspase-activated DNAse; alpha-beta roll, protein-protein complex, DNA binding protein; NMR {Mus musculus} SCOP: d.15.2.1
Probab=43.02 E-value=66 Score=20.85 Aligned_cols=49 Identities=14% Similarity=0.215 Sum_probs=34.1
Q ss_pred CcHHHHHHHHhhhhCCCCC--CeEEE--eCCEEccCCccccccccCCCCEEEEEEE
Q 032678 21 DTIDNVKAKIQDKEGIPPD--QQRLI--FAGKQLEDGRTLADYNIQKESTLHLVLR 72 (136)
Q Consensus 21 ~TV~~LK~~I~~~~gip~~--~qrLi--~~Gk~L~D~~tL~~ygI~~gstI~l~~r 72 (136)
.|+.+|+.+...+.+++.. .-+|+ -.|..++|+.-+..+. ..|+.+++.
T Consensus 37 ~SL~EL~~K~~~~l~l~~~~~~~~lvLeeDGT~VddEeYF~tLp---~nT~lmvL~ 89 (100)
T 1f2r_I 37 SSLEELRSKACELLAIDKSLTPITLVLAEDGTIVDDDDYFLCLP---SNTKFVALA 89 (100)
T ss_dssp SSHHHHHHHHHHHHCCCGGGCSCEEEESSSCCBCCSSSSSSSSC---SCCEEEEEC
T ss_pred CCHHHHHHHHHHHhccCCCCCceEEEEeeCCcEEechhHhhcCC---CCCEEEEEc
Confidence 5899999999999999753 35555 3688888776544432 455555554
No 202
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Probab=40.60 E-value=63 Score=19.94 Aligned_cols=42 Identities=14% Similarity=0.186 Sum_probs=35.5
Q ss_pred EEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEE
Q 032678 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 44 (136)
Q Consensus 3 I~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi 44 (136)
|.+--++++...++|.|..|+.+--.+.-++-++.|+.-...
T Consensus 4 irvhLPn~QrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~V~ 45 (77)
T 1c1y_B 4 IRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQPECCAVF 45 (77)
T ss_dssp EEEEETTTEEEEEECCTTCBHHHHHHHHHHTTTCCGGGEEEE
T ss_pred EEEECCCCceEEEEecCCcCHHHHHHHHHHHcCCCHHHeEEE
Confidence 566678888889999999999999999999999988776554
No 203
>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*
Probab=38.83 E-value=29 Score=24.37 Aligned_cols=27 Identities=15% Similarity=0.218 Sum_probs=21.6
Q ss_pred EEEEEeCCCCEEEEEecCCCcHHHHHHH
Q 032678 2 QIFVKTLTGKTITLEVESSDTIDNVKAK 29 (136)
Q Consensus 2 qI~Vk~~~g~~~~i~v~~~~TV~~LK~~ 29 (136)
.|.+. .+|+.+++++++++|+.++-..
T Consensus 5 ~i~~~-vNG~~~~~~v~~~~tLLd~LR~ 31 (166)
T 1n62_A 5 HIELT-INGHPVEALVEPRTLLIHFIRE 31 (166)
T ss_dssp EEEEE-ETTEEEEEEECTTCBHHHHHHH
T ss_pred eEEEE-ECCEEEEEecCCCCcHHHHHHH
Confidence 45554 6899999999999999886554
No 204
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=38.08 E-value=47 Score=23.30 Aligned_cols=33 Identities=12% Similarity=0.165 Sum_probs=29.5
Q ss_pred CEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEE
Q 032678 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 43 (136)
Q Consensus 11 ~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL 43 (136)
+++.+.|++..+=.++|+.|+..+++.+....-
T Consensus 94 n~yvF~Vd~~AnK~qIK~AVEklf~VkV~kVNT 126 (156)
T 2zkr_s 94 NTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNT 126 (156)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEE
T ss_pred CcEEEEEECCCCHHHHHHHHHHHhCCcceEEEe
Confidence 579999999999999999999999998876643
No 205
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} PDB: 3u7d_A
Probab=37.87 E-value=38 Score=25.80 Aligned_cols=34 Identities=9% Similarity=0.235 Sum_probs=28.0
Q ss_pred CEEEEEeCCCCEEEEEecC--CCcHHHHHHHHhhhhCCCC
Q 032678 1 MQIFVKTLTGKTITLEVES--SDTIDNVKAKIQDKEGIPP 38 (136)
Q Consensus 1 MqI~Vk~~~g~~~~i~v~~--~~TV~~LK~~I~~~~gip~ 38 (136)
++|.|-.++|....++++. ++|++++-+ ..|++.
T Consensus 6 ~~i~V~l~dg~~~~~~i~~~~~tt~~el~e----~lgL~~ 41 (322)
T 4dxa_B 6 EKVRIYRMDGSYRSVELKHGNNTTVQQIME----GMRLSQ 41 (322)
T ss_dssp CEEEEECTTSCEEEEECTTGGGCCHHHHHT----TSSCCT
T ss_pred eEEEEEEECCcEEEEEEcCCCCCcHHHHHH----HhCcCc
Confidence 4688999999999999999 999999943 357654
No 206
>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=37.59 E-value=28 Score=24.36 Aligned_cols=26 Identities=15% Similarity=0.280 Sum_probs=21.0
Q ss_pred EEEEEeCCCCEEEEEecCCCcHHHHHH
Q 032678 2 QIFVKTLTGKTITLEVESSDTIDNVKA 28 (136)
Q Consensus 2 qI~Vk~~~g~~~~i~v~~~~TV~~LK~ 28 (136)
.|.+. .+|+.+++++++++|+.++-.
T Consensus 5 ~i~~~-vNG~~~~v~v~p~~tLLd~LR 30 (160)
T 3hrd_D 5 TINLN-LNGEARSIVTEPNKRLLDLLR 30 (160)
T ss_dssp EEEEE-ETTEEEEEEECSSSBHHHHHH
T ss_pred eEEEE-ECCEEEEEecCCCCCHHHHHH
Confidence 56664 789999999999999988654
No 207
>3chb_D Cholera toxin; toxin/receptor complex, pentasaccharide; HET: GAL NGA SIA BGC MES; 1.25A {Vibrio cholerae} SCOP: b.40.2.1 PDB: 2chb_D* 1jr0_D* 1fgb_D 1eei_D* 1llr_D* 1md2_D* 1pzj_D* 1pzk_D* 1rcv_D* 1rd9_D* 1rdp_D* 1rf2_D* 1s5b_D 1s5c_D 1s5d_D* 1s5e_D* 1s5f_D* 1chp_D 1chq_D 1ct1_D* ...
Probab=36.66 E-value=39 Score=21.44 Aligned_cols=31 Identities=29% Similarity=0.381 Sum_probs=25.3
Q ss_pred EEEEeCCCCEEEEEecCCCcHHHHHHHHhhh
Q 032678 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDK 33 (136)
Q Consensus 3 I~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~ 33 (136)
+.+...+|-+|.++|+.+.-+..-|..|+..
T Consensus 39 viisf~ngatfqvevpgsqh~~sqk~~~erm 69 (104)
T 3chb_D 39 AIITFKNGATFQVEVPGSQHIDSQKKAIERM 69 (104)
T ss_dssp EEEECTTCCEEEECCCCTTSCHHHHHHHHHH
T ss_pred EEEEecCCcEEEEecCcchhhhhhhhHHHHH
Confidence 4556678999999999999888888877764
No 208
>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*
Probab=36.16 E-value=35 Score=23.93 Aligned_cols=27 Identities=22% Similarity=0.217 Sum_probs=21.3
Q ss_pred EEEEEeCCCCEEEEEecCCCcHHHHHHH
Q 032678 2 QIFVKTLTGKTITLEVESSDTIDNVKAK 29 (136)
Q Consensus 2 qI~Vk~~~g~~~~i~v~~~~TV~~LK~~ 29 (136)
.|.+. .+|+.+++++++++|+.++-..
T Consensus 5 ~i~~~-vNG~~~~~~v~~~~tLLd~LR~ 31 (163)
T 1ffv_A 5 IITVN-VNGKAQEKAVEPRTLLIHFLRE 31 (163)
T ss_dssp EEEEE-ETTEEEEEEECTTCBHHHHHHH
T ss_pred eEEEE-ECCEEEEEecCCCCcHHHHHHh
Confidence 45553 6899999999999999876554
No 209
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=36.15 E-value=52 Score=20.75 Aligned_cols=60 Identities=15% Similarity=0.138 Sum_probs=39.4
Q ss_pred EEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEe-CCEEcc-CCccccccc--cCCCCEEEEEEE
Q 032678 13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLE-DGRTLADYN--IQKESTLHLVLR 72 (136)
Q Consensus 13 ~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~-~Gk~L~-D~~tL~~yg--I~~gstI~l~~r 72 (136)
-.+-|+.+.|++++..-|.++.++++++--.+| +...+. .+.++++.= -+++..+.+...
T Consensus 22 ~KflVp~~~tv~~~~~~lRkrL~l~~~~alFlyVnn~~~P~~d~~~~~Ly~~~k~DGfLyv~Ys 85 (91)
T 4gdk_A 22 KKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLYECFGSDGKLVLHYC 85 (91)
T ss_dssp CEEEEETTCBHHHHHHHHHHHTTCCSSSCCEEEETTTBCCCTTCBHHHHHHHHCBTTEEEEEEE
T ss_pred cEEEcCCCCCHHHHHHHHHHHhCCCCCCeEEEEECCccCCChhhHHHHHHHHhCCCCEEEEEEe
Confidence 356788999999999999999999887654444 554433 355554431 124556665543
No 210
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2
Probab=35.98 E-value=42 Score=23.35 Aligned_cols=28 Identities=21% Similarity=0.293 Sum_probs=21.7
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHH
Q 032678 1 MQIFVKTLTGKTITLEVESSDTIDNVKAK 29 (136)
Q Consensus 1 MqI~Vk~~~g~~~~i~v~~~~TV~~LK~~ 29 (136)
|.|.+. .+|+.+.+++++.+|+.+.-..
T Consensus 10 m~i~~~-ing~~~~~~v~~~~tlL~~Lr~ 37 (168)
T 1t3q_A 10 MRISAT-INGKPRVFYVEPRMHLADALRE 37 (168)
T ss_dssp EEEEEE-ETTEEEEEEECTTSBHHHHHHH
T ss_pred ceEEEE-ECCEEEEEecCCCCcHHHHHHh
Confidence 445554 6899999999999999876554
No 211
>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A
Probab=35.98 E-value=32 Score=26.94 Aligned_cols=54 Identities=9% Similarity=0.038 Sum_probs=38.9
Q ss_pred EEeCCCC----EEEEEecCCCcHHHHHHHHhhhhCCCC-CCeEEEe--C--CE--EccCCccccc
Q 032678 5 VKTLTGK----TITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIF--A--GK--QLEDGRTLAD 58 (136)
Q Consensus 5 Vk~~~g~----~~~i~v~~~~TV~~LK~~I~~~~gip~-~~qrLi~--~--Gk--~L~D~~tL~~ 58 (136)
|...+|. ...+.+++++|+.+|-..|.++.|+.. +..-|.+ . |. -|+.++++.+
T Consensus 12 V~l~~g~~~~~~~~~~~~~~tt~~dl~~~v~~~lgL~~~~~FgL~~~~~~~~~~~wL~~~~~l~~ 76 (375)
T 2al6_A 12 YFENSSEPTTWASIIRHGDATDVRGIIQKIVDCHKVKNVACYGLRLSHLQSEEVHWLHLDMGVSN 76 (375)
T ss_dssp CCCCSSCGGGCEEEEEECTTCBHHHHHHHHHHHTTCSCGGGEEEEEEETTSSCEEEECTTSBHHH
T ss_pred EEecCCCCCCceEEEEeCCCCCHHHHHHHHHHHcCCCeEeEEEEEEEEcCCCceEeeCCccchhh
Confidence 4445676 899999999999999999999999843 3335544 2 22 3666667654
No 212
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=35.69 E-value=58 Score=22.69 Aligned_cols=34 Identities=12% Similarity=0.135 Sum_probs=29.9
Q ss_pred CCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEE
Q 032678 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 43 (136)
Q Consensus 10 g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL 43 (136)
..++.+.|++..+=.++|+.++..+++.+....-
T Consensus 87 ~N~~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNT 120 (150)
T 4a17_R 87 ENTMVFYVHNRSTKPQIKSAFEKLYNVKVRSVNT 120 (150)
T ss_dssp SSEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEE
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEe
Confidence 4689999999999999999999999998876644
No 213
>4eku_A Protein-tyrosine kinase 2-beta; proline-rich tyrosine kinase 2, FERM domain, transferase; 3.25A {Homo sapiens}
Probab=35.29 E-value=53 Score=26.09 Aligned_cols=52 Identities=12% Similarity=0.083 Sum_probs=37.0
Q ss_pred CCCCEEEEEecCCCcHHHHHHHHh--hhhCCC---CCCeEEEe----CC--EEccCCcccccc
Q 032678 8 LTGKTITLEVESSDTIDNVKAKIQ--DKEGIP---PDQQRLIF----AG--KQLEDGRTLADY 59 (136)
Q Consensus 8 ~~g~~~~i~v~~~~TV~~LK~~I~--~~~gip---~~~qrLi~----~G--k~L~D~~tL~~y 59 (136)
++|....+.+++++||.++-..|. .+.|+. ++..-|.+ .| .-|+++++|.+.
T Consensus 35 ~~~~~k~v~~d~~ttV~dVi~~i~~~~kiG~~i~~~~~FgL~~~~~~~~~~~wL~~~~~l~~v 97 (392)
T 4eku_A 35 PGKNFKLVKCTVQTEIREIITSILLSGRIGPNIRLAECYGLRLKHMKSDEIHWLHPQMTVGEV 97 (392)
T ss_dssp GGGEEEEEEEETTCBHHHHHHHHHHTTTTCSSCCCGGGEEEEEEESSSCCEEEECTTSBHHHH
T ss_pred CCCCeEEEEeCCCCcHHHHHHHHHHHhhcCCCcCccceEEEEEEECCCCceEECCCCCcHHHH
Confidence 678888999999999999999998 567753 33444433 12 356677777653
No 214
>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C*
Probab=34.86 E-value=46 Score=20.98 Aligned_cols=25 Identities=20% Similarity=0.294 Sum_probs=20.4
Q ss_pred EEEEEeCCCCEEEEEecCCCcHHHH
Q 032678 2 QIFVKTLTGKTITLEVESSDTIDNV 26 (136)
Q Consensus 2 qI~Vk~~~g~~~~i~v~~~~TV~~L 26 (136)
+|++...+|+..++++.+.+|+.+.
T Consensus 8 ~V~~~~~~g~~~~v~~~~g~tLL~a 32 (108)
T 2bt6_A 8 TVHFINRDGETLTTKGKIGDSLLDV 32 (108)
T ss_dssp EEEEECTTSCEEEEEEETTCBHHHH
T ss_pred EEEEECCCCCEEEEEECCCChHHHH
Confidence 5777767899889999999998764
No 215
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=33.94 E-value=61 Score=22.38 Aligned_cols=33 Identities=6% Similarity=0.081 Sum_probs=29.3
Q ss_pred CEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEE
Q 032678 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 43 (136)
Q Consensus 11 ~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL 43 (136)
.++.+.|++..+=.++|+.++..+++.+....-
T Consensus 80 N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNT 112 (142)
T 3u5e_X 80 NILVFQVSMKANKYQIKKAVKELYEVDVLKVNT 112 (142)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHSCCEEEEEE
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEe
Confidence 578999999999999999999999998876643
No 216
>2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur, iron, transport, ferredoxin, adrenodoxin-like, electron transport; 2.60A {Schizosaccharomyces pombe}
Probab=31.26 E-value=66 Score=19.97 Aligned_cols=27 Identities=26% Similarity=0.449 Sum_probs=21.1
Q ss_pred EEEEEeCCCCEEEEEecCCCcHHHHHH
Q 032678 2 QIFVKTLTGKTITLEVESSDTIDNVKA 28 (136)
Q Consensus 2 qI~Vk~~~g~~~~i~v~~~~TV~~LK~ 28 (136)
+|++...+|+..++++++..|+.+.-.
T Consensus 5 ~v~~~~~~g~~~~~~~~~g~tlL~a~~ 31 (103)
T 2wlb_A 5 KVFFVTPEGREIMIEGNEGDSILDLAH 31 (103)
T ss_dssp EEEEECTTCCEEEEEECTTCBHHHHHH
T ss_pred EEEEEeCCCCEEEEEECCCCHHHHHHH
Confidence 566766788888999999999876543
No 217
>2y5c_A Adrenodoxin-like protein, mitochondrial; electron transport, iron-sulfur cluster biogenesis; 1.70A {Homo sapiens}
Probab=29.67 E-value=63 Score=20.38 Aligned_cols=25 Identities=12% Similarity=0.260 Sum_probs=20.3
Q ss_pred EEEEEeCCCCEEEEEecCCCcHHHH
Q 032678 2 QIFVKTLTGKTITLEVESSDTIDNV 26 (136)
Q Consensus 2 qI~Vk~~~g~~~~i~v~~~~TV~~L 26 (136)
+|++...+|+..++++.+..|+.+.
T Consensus 7 ~v~~~~~~g~~~~~~~~~g~tlL~a 31 (109)
T 2y5c_A 7 NVVFVDRSGQRIPVSGRVGDNVLHL 31 (109)
T ss_dssp EEEEECTTSCEEEEEEETTCBHHHH
T ss_pred EEEEEcCCCCEEEEEECCCCcHHHH
Confidence 5666667899989999999999764
No 218
>3f5r_A FACT complex subunit POB3; APC7736, FACT complex (SPT16P-POB3P), saccharomyces cerevisi structural genomics, PSI-2; 1.70A {Saccharomyces cerevisiae}
Probab=29.38 E-value=49 Score=23.98 Aligned_cols=46 Identities=20% Similarity=0.244 Sum_probs=37.3
Q ss_pred EEEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeCC
Q 032678 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (136)
Q Consensus 2 qI~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~G 47 (136)
++.|.+.+|..+.++=-...-...||+.+...++++.+.-.+...|
T Consensus 86 ~LrI~~K~g~~~~fdGF~~~D~~~L~~~fk~~f~i~Le~kEls~kG 131 (191)
T 3f5r_A 86 DLKINTKNQGVIQLDGFSQDDYNLIKNDFHRRFNIQVEQREHSLRG 131 (191)
T ss_dssp EEEEEESSSCEEEEEEECGGGHHHHHHHHHHHHCCCCEECSSTTTT
T ss_pred EEEEEECCCceEEecCCCHHHHHHHHHHHHHHcCCCceeeeeeccc
Confidence 5778888888888886677779999999999999988766665444
No 219
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=28.83 E-value=1.1e+02 Score=19.92 Aligned_cols=42 Identities=17% Similarity=0.237 Sum_probs=32.6
Q ss_pred EEEEeC-CCCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeCC
Q 032678 3 IFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (136)
Q Consensus 3 I~Vk~~-~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~G 47 (136)
|.||.- .|.+..+.++..-+.++|.+++...+|-+ .-|.|..
T Consensus 9 vRiKfE~~GEkRIi~f~RPv~f~eL~~Kv~~~fGq~---ldL~y~n 51 (103)
T 2cu1_A 9 VRVKFEHRGEKRILQFPRPVKLEDLRSKAKIAFGQS---MDLHYTN 51 (103)
T ss_dssp EEEEEEETTEEEEEEEESSCCHHHHHHHHHHHHSSC---EEEEECS
T ss_pred EEEEEEecCeEEEEeccCCccHHHHHHHHHHHhCCe---eeEEEec
Confidence 455544 57888899999999999999999999963 4455543
No 220
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=27.61 E-value=65 Score=22.50 Aligned_cols=34 Identities=15% Similarity=0.239 Sum_probs=29.8
Q ss_pred CEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEE
Q 032678 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 44 (136)
Q Consensus 11 ~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi 44 (136)
.++.+.|+...+=.++|+.++..+++.+....-+
T Consensus 90 N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl 123 (152)
T 3iz5_X 90 NTLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTL 123 (152)
T ss_dssp SEEEEEECSSCCSHHHHHHHHHHHTCCEEEEEEE
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCcceEEEee
Confidence 6889999999999999999999999988766443
No 221
>1uwm_A Ferredoxin VI, FDVI; electron transport, metal-binding, iron-sulfur, iron, 2Fe-2S; 2.0A {Rhodobacter capsulatus} SCOP: d.15.4.1 PDB: 1e9m_A
Probab=27.48 E-value=94 Score=19.33 Aligned_cols=26 Identities=15% Similarity=0.180 Sum_probs=21.0
Q ss_pred EEEEEeCCCCEEEEEecCCCcHHHHH
Q 032678 2 QIFVKTLTGKTITLEVESSDTIDNVK 27 (136)
Q Consensus 2 qI~Vk~~~g~~~~i~v~~~~TV~~LK 27 (136)
+|++...+|...++++.+..|+.+.-
T Consensus 2 ~v~~~~~~g~~~~~~~~~g~tlL~aa 27 (106)
T 1uwm_A 2 KIIFIEHNGTRHEVEAKPGLTVMEAA 27 (106)
T ss_dssp EEEEECTTCCEEEEECCTTSBHHHHH
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHH
Confidence 67777788988899999999987643
No 222
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=26.75 E-value=1.2e+02 Score=19.03 Aligned_cols=42 Identities=12% Similarity=0.073 Sum_probs=35.8
Q ss_pred EEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEE
Q 032678 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 44 (136)
Q Consensus 3 I~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi 44 (136)
|.+.-++++...++|.|..|+.+--.+.-++-++.|+.-...
T Consensus 10 irvhLPn~QrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~Vy 51 (86)
T 1wxm_A 10 VKVYLPNKQRTVVTVRDGMSVYDSLDKALKVRGLNQDCCVVY 51 (86)
T ss_dssp EEEECSSSCEEEEECCSSCBSHHHHHHHHHTTTCCSSSEEEE
T ss_pred EEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCCHHHeEEE
Confidence 566677888899999999999999999999999988776654
No 223
>1xlq_A Putidaredoxin, PDX; [2Fe-2S], ferredoxin, oxidoreductase; 1.45A {Pseudomonas putida} SCOP: d.15.4.1 PDB: 1xlp_A 1oqr_A 1r7s_A 1pdx_A 1yji_A 1yjj_A 1oqq_A 1xln_A 1xlo_A 3lb8_C* 1put_A 1gpx_A
Probab=26.73 E-value=89 Score=19.45 Aligned_cols=26 Identities=12% Similarity=0.198 Sum_probs=21.0
Q ss_pred EEEEEeCCCCEEEEEecCCCcHHHHH
Q 032678 2 QIFVKTLTGKTITLEVESSDTIDNVK 27 (136)
Q Consensus 2 qI~Vk~~~g~~~~i~v~~~~TV~~LK 27 (136)
+|++...+|...++++.+..|+.+.-
T Consensus 2 ~V~~~~~~g~~~~~~~~~g~tlLeaa 27 (106)
T 1xlq_A 2 KVVYVSHDGTRRELDVADGVSLMQAA 27 (106)
T ss_dssp EEEEECTTSCEEEEECCTTCBHHHHH
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHH
Confidence 57776788988899999999987653
No 224
>1ltr_D ETB-R2, heat-labIle enterotoxin; B subunit, anti-HSV; 3.04A {Escherichia coli} SCOP: b.40.2.1
Probab=25.54 E-value=51 Score=21.15 Aligned_cols=31 Identities=29% Similarity=0.433 Sum_probs=24.3
Q ss_pred EEEEeCCCCEEEEEecCCCcHHHHHHHHhhh
Q 032678 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDK 33 (136)
Q Consensus 3 I~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~ 33 (136)
+.+...+|-+|.++|+.+.-++.-|..|+..
T Consensus 38 viisf~ngatfqvevpgsqh~~sqk~~~erm 68 (113)
T 1ltr_D 38 VIITFKSGATFQVEVPGSQHIDSQKKAIERM 68 (113)
T ss_dssp EEEECTTSCEEEECCCSTTSCSHHHHHHHHH
T ss_pred EEEEecCCcEEEEecCcchhhhhhhhHHHHH
Confidence 3455678999999999998887777777654
No 225
>1rm6_C 4-hydroxybenzoyl-COA reductase gamma subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: a.56.1.1 d.15.4.2 PDB: 1sb3_C*
Probab=25.21 E-value=89 Score=21.56 Aligned_cols=27 Identities=15% Similarity=0.086 Sum_probs=21.3
Q ss_pred EEEEeCCCCEEEEEecCCCcHHHHHHHH
Q 032678 3 IFVKTLTGKTITLEVESSDTIDNVKAKI 30 (136)
Q Consensus 3 I~Vk~~~g~~~~i~v~~~~TV~~LK~~I 30 (136)
|.+ +.+|+.+.+++++.+|+.++-...
T Consensus 5 i~~-~vNG~~~~v~~~~~~tLL~~Lr~~ 31 (161)
T 1rm6_C 5 LRL-TLNGRAREDLVPDNMLLLDYLRET 31 (161)
T ss_dssp EEE-EETTEEEEEEEETTCBHHHHHHHT
T ss_pred EEE-EECCEEEEEecCCcCcHHHHHHHc
Confidence 444 368999999999999998776654
No 226
>3hui_A Ferredoxin; cytochrome P450, electron transfer, iron, iron-sulfur, metal-binding, electron transport; 2.01A {Rhodopseudomonas palustris}
Probab=24.91 E-value=99 Score=20.40 Aligned_cols=25 Identities=36% Similarity=0.376 Sum_probs=21.0
Q ss_pred EEEEEeCCCCEEEEEecCCCcHHHH
Q 032678 2 QIFVKTLTGKTITLEVESSDTIDNV 26 (136)
Q Consensus 2 qI~Vk~~~g~~~~i~v~~~~TV~~L 26 (136)
+|++...+|...++++.+..|+.+.
T Consensus 23 ~Vt~~~~~G~~~~v~~~~G~tLL~a 47 (126)
T 3hui_A 23 KINFVDHTGETRTVEVEEGATVMEA 47 (126)
T ss_dssp EEEEECTTSCEEEEEEETTSBHHHH
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHH
Confidence 5777778898889999999999774
No 227
>3cjl_A Domain of unknown function; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Pectobacterium atrosepticum SCRI1043}
Probab=24.91 E-value=74 Score=20.12 Aligned_cols=37 Identities=24% Similarity=0.381 Sum_probs=30.1
Q ss_pred EEEEEeCCC--CEEEEEecCCCcHHHHHHHHhhhhCCCC
Q 032678 2 QIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPP 38 (136)
Q Consensus 2 qI~Vk~~~g--~~~~i~v~~~~TV~~LK~~I~~~~gip~ 38 (136)
+|+|..... +++.+++...+-+-.+-+++....++++
T Consensus 7 rITve~l~~~~~~l~Fe~~nhDDi~~Ive~~~~~~~~~~ 45 (88)
T 3cjl_A 7 QITVEEKAEHQRTLSFEFSLHDDLFKLLEKVDGKMDMTP 45 (88)
T ss_dssp EEEEEESSTTCCEEEEEEEESSCHHHHHHHHTTTSSSCH
T ss_pred EEEEEEccCCCCCeEEeccChHHHHHHHHHhhccCCCCH
Confidence 578876654 7888999999999999999987777654
No 228
>4dxe_H ACP, acyl carrier protein; acyl-carrier-protein synthase, type II acid synthesis pathway; 2.51A {Staphylococcus aureus}
Probab=24.80 E-value=53 Score=20.74 Aligned_cols=41 Identities=20% Similarity=0.432 Sum_probs=26.2
Q ss_pred EEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeCCEEccCCccc-cccccC
Q 032678 13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL-ADYNIQ 62 (136)
Q Consensus 13 ~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL-~~ygI~ 62 (136)
+.+...+.+....|++.|++..+++++. +.++..| .++|+-
T Consensus 18 ~~~~m~~mei~~~l~~iiae~l~~~~~~---------I~~d~~l~~dLGlD 59 (101)
T 4dxe_H 18 LYFQSNAMENFDKVKDIIVDRLGVDADK---------VTEDASFKDDLGAD 59 (101)
T ss_dssp ------CTTHHHHHHHHHHHTTCCCGGG---------CCTTCBTTTTSCCC
T ss_pred HHHhcCHHHHHHHHHHHHHHHHCcChhh---------CCCCCcchhhcCCC
Confidence 3456777788899999999999987653 3455566 666653
No 229
>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=23.93 E-value=92 Score=28.41 Aligned_cols=69 Identities=29% Similarity=0.265 Sum_probs=45.9
Q ss_pred EEEEeCCCCEEEEEecCCCcHHHHHHHHhhhhC--------CCCCCeEEEe-C--CE--EccC-CccccccccCCCCEEE
Q 032678 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--------IPPDQQRLIF-A--GK--QLED-GRTLADYNIQKESTLH 68 (136)
Q Consensus 3 I~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~g--------ip~~~qrLi~-~--Gk--~L~D-~~tL~~ygI~~gstI~ 68 (136)
|.+=.++|-.+.++++.+.|++++|+++.++.. -.+++-.+.+ + |. .+.| .+.|.+...- -..+.
T Consensus 54 vd~LLPnGi~i~~~v~~~~Tl~~iK~~lw~~A~~~pl~~~l~~~~~Y~f~~i~~~~e~ee~~de~~~l~~~~~~-~p~l~ 132 (1092)
T 2y3a_A 54 VDFLLPTGIYIQLEVPREATISYIKQMLWKQVHNYPMFNLLMDIDSYMFACVNQTAVYEELEDETRRLCDVRPF-LPVLK 132 (1092)
T ss_dssp EEEECTTCCEEEEEEETTCBHHHHHHHHHHHGGGSTTTTSCCCGGGEEEEEEBSSSCEEECCCTTSBSGGGCBS-SSCEE
T ss_pred EEEECCCceEEEEEecCcccHHHHHHHHHHHHHhCCchhccCCcceeEEEEecCCceEEEeecCceeeEeeccc-ceEEE
Confidence 344456899999999999999999999977622 2344555554 2 32 4544 5788887643 34566
Q ss_pred EEEE
Q 032678 69 LVLR 72 (136)
Q Consensus 69 l~~r 72 (136)
++-+
T Consensus 133 lve~ 136 (1092)
T 2y3a_A 133 LVTR 136 (1092)
T ss_dssp EEES
T ss_pred EEec
Confidence 6554
No 230
>2x5r_A Hypothetical protein ORF126; unknown function, viral protein; 2.00A {Pyrobaculum spherical virus}
Probab=23.77 E-value=31 Score=22.29 Aligned_cols=43 Identities=21% Similarity=0.270 Sum_probs=23.0
Q ss_pred ccCCCCEEEEEEEecCCccCCchHHHHhhcCCCcceeeccccc
Q 032678 60 NIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKYAHV 102 (136)
Q Consensus 60 gI~~gstI~l~~r~~gG~~~~s~~~~a~k~n~~k~~cr~~~ya 102 (136)
|-+....|.+++-..-.-.+..+.--.+=+|+.|..|-+|+-|
T Consensus 44 gpekegvisvvvlapkdlneealalrvkwfndtkprcvkcgaa 86 (127)
T 2x5r_A 44 GPEKEGVISVVVLAPKDLNEEALALRVKWFNDTKPRCVKCGAA 86 (127)
T ss_dssp CCCBTTEEEEEEEESSCCCHHHHHHHHHHHHHHCCBCTTTCCB
T ss_pred CCccccEEEEEEEcCcccCHHHhhheeeeccCCCcceeeeccc
Confidence 4444556665544322222222222234578899999999533
No 231
>1awd_A Ferredoxin; electron transport, eukaryotic, green ALGA, electron transfer, metalloprotein; 1.40A {'chlorella' fusca} SCOP: d.15.4.1
Probab=22.79 E-value=1.1e+02 Score=18.64 Aligned_cols=27 Identities=22% Similarity=0.271 Sum_probs=20.0
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHH
Q 032678 1 MQIFVKTLTGKTITLEVESSDTIDNVKA 28 (136)
Q Consensus 1 MqI~Vk~~~g~~~~i~v~~~~TV~~LK~ 28 (136)
++|++...+| ..++++++..|+.+.-.
T Consensus 1 ~~v~~~~~~g-~~~~~~~~g~tlL~a~~ 27 (94)
T 1awd_A 1 YKVTLKTPSG-EETIECPEDTYILDAAE 27 (94)
T ss_dssp CEEEEEETTE-EEEEECCTTSCHHHHHH
T ss_pred CEEEEEeCCC-cEEEEECCCCcHHHHHH
Confidence 3677776666 67889999999977544
No 232
>3bbo_V Ribosomal protein L23; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=22.73 E-value=36 Score=24.81 Aligned_cols=32 Identities=9% Similarity=0.182 Sum_probs=28.4
Q ss_pred CCEEEEEecCCCcHHHHHHHHhhhhCCCCCCe
Q 032678 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ 41 (136)
Q Consensus 10 g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~q 41 (136)
++++.+.|++..+=.++|+.|++.+++.+...
T Consensus 131 nNkyvF~Vd~kANK~QIKqAVEkLFdVKV~kV 162 (198)
T 3bbo_V 131 ENSLLFTVDVRADKKMIREAISNFFGVKVRKV 162 (198)
T ss_dssp SCEECCEECTTCCHHHHHHTTTTTSCCCEEEC
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCceeEE
Confidence 46889999999999999999999999887654
No 233
>1jq4_A Methane monooxygenase component C; [2Fe-2S] ferredoxin, oxidoreductase; NMR {Methylococcus capsulatus str} SCOP: d.15.4.2
Probab=22.64 E-value=94 Score=19.02 Aligned_cols=27 Identities=19% Similarity=0.267 Sum_probs=20.2
Q ss_pred EEEEEeCCCCEEEEEecCCCcHHHHHH
Q 032678 2 QIFVKTLTGKTITLEVESSDTIDNVKA 28 (136)
Q Consensus 2 qI~Vk~~~g~~~~i~v~~~~TV~~LK~ 28 (136)
+|++...++....+++++..|+.+.-.
T Consensus 6 ~v~~~~~~~~~~~~~~~~g~tlL~a~~ 32 (98)
T 1jq4_A 6 TITAVTEDGESLRFECRSDEDVITAAL 32 (98)
T ss_dssp EEEEEETTTEEEEEEEESCCTHHHHHH
T ss_pred EEEEEecCCCcEEEEeCCCChHHHHHH
Confidence 466666667778899999999977543
No 234
>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*
Probab=22.55 E-value=23 Score=28.66 Aligned_cols=56 Identities=13% Similarity=0.306 Sum_probs=26.7
Q ss_pred EEEecCCCcHHHHHHHHhhhhC--CCC-C-------CeEEEeCCE--Ecc------CCccccccccCCCCEEEE
Q 032678 14 TLEVESSDTIDNVKAKIQDKEG--IPP-D-------QQRLIFAGK--QLE------DGRTLADYNIQKESTLHL 69 (136)
Q Consensus 14 ~i~v~~~~TV~~LK~~I~~~~g--ip~-~-------~qrLi~~Gk--~L~------D~~tL~~ygI~~gstI~l 69 (136)
.++++++.|+.++-+.+..+.. +.. + ..+++|... .|+ -+++|+++|+.+|+.|.+
T Consensus 344 ~~~~~~~~tl~~~~~~l~~~~~~~~~~~~is~~~~~~~~~ly~~~~~~~~~~~~~~l~~~l~~l~~~~g~~~~v 417 (434)
T 1tt5_B 344 NIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKELGLVDGQELAV 417 (434)
T ss_dssp CCCC-----CTTHHHHHHHCSSCCCSSCCCEET----TEECCCCCCTTTTTTSCC-CCC-----CCCSSCCEEC
T ss_pred eEEECCCccHHHHHHHHhccCccceEccEEEEEccCCCcEEEecCCcchhhhhHhhhcCCHHHcCCCCCCEEEE
Confidence 3455666777777777777533 221 1 135666532 222 256899999999998876
No 235
>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1
Probab=22.36 E-value=70 Score=17.12 Aligned_cols=20 Identities=25% Similarity=0.393 Sum_probs=14.0
Q ss_pred CCcH---HHHHHHHhhhhCCCCC
Q 032678 20 SDTI---DNVKAKIQDKEGIPPD 39 (136)
Q Consensus 20 ~~TV---~~LK~~I~~~~gip~~ 39 (136)
+.|| .+|-..+++++|+++.
T Consensus 12 ~lTvlE~~eLvk~leekfGVsaa 34 (40)
T 1dd4_C 12 KLTVSELAELVKKLEDKFGVTAA 34 (40)
T ss_dssp TSCHHHHHHHHHHHHHHTCCCSC
T ss_pred hCcHHHHHHHHHHHHHHHCCCcc
Confidence 4555 4666777899999763
No 236
>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A
Probab=22.03 E-value=1.2e+02 Score=25.92 Aligned_cols=58 Identities=17% Similarity=0.358 Sum_probs=37.6
Q ss_pred EEEEEecC-CCcHHHHHHHH-hhhhCCCCCC-------eEEEeCCEE--ccC--CccccccccCCCCEEEE
Q 032678 12 TITLEVES-SDTIDNVKAKI-QDKEGIPPDQ-------QRLIFAGKQ--LED--GRTLADYNIQKESTLHL 69 (136)
Q Consensus 12 ~~~i~v~~-~~TV~~LK~~I-~~~~gip~~~-------qrLi~~Gk~--L~D--~~tL~~ygI~~gstI~l 69 (136)
+.+++++. .+|+.+|-+.+ .++.|+.... .+++|.... .++ +++|+++++++|+.+.+
T Consensus 449 ~~~~~~~~~~~TL~~li~~~~~~~~~l~~~~is~~~~~~~~ly~~~~~~~~~~l~~~l~el~v~~~~~~~v 519 (640)
T 1y8q_B 449 EVTVRLNVHKVTVLTLQDKIVKEKFAMVAPDVQIEDGKGTILISSEEGETEANNHKKLSEFGIRNGSRLQA 519 (640)
T ss_dssp EEEEEECTTTCBHHHHHHCCCCCCTCCSSCEEEESSSSCCEEECSSSSSSTTGGGSBGGGGTCCTTCEEEE
T ss_pred EEEEEEeCCCCcHHHHHHHHHHHhhCCCCceEEEEcCCCcEEEeccchhhHHhhhCcHHHhCccCCcEEEe
Confidence 56677765 67999999985 6677754422 234553221 111 46799999998887654
No 237
>1frr_A Ferredoxin I; electron transfer(iron-sulfur protein); 1.80A {Equisetum arvense} SCOP: d.15.4.1
Probab=21.82 E-value=1.2e+02 Score=18.25 Aligned_cols=26 Identities=31% Similarity=0.415 Sum_probs=19.5
Q ss_pred EEEEEeCCCCEEEEEecCCCcHHHHHH
Q 032678 2 QIFVKTLTGKTITLEVESSDTIDNVKA 28 (136)
Q Consensus 2 qI~Vk~~~g~~~~i~v~~~~TV~~LK~ 28 (136)
+|++...+| ..++++++.+|+.+.-.
T Consensus 3 ~v~~~~~~g-~~~~~~~~g~tlL~a~~ 28 (95)
T 1frr_A 3 KTVLKTPSG-EFTLDVPEGTTILDAAE 28 (95)
T ss_dssp EEEEEETTE-EEEEEECTTCCHHHHHH
T ss_pred EEEEEeCCC-cEEEEeCCCCcHHHHHH
Confidence 567766777 67888999999977543
No 238
>2nnz_A Hypothetical protein; beta-barrel, structural genomics, ontario centre for structu proteomics, OCSP, unknown function; NMR {Archaeoglobus fulgidus}
Probab=21.81 E-value=41 Score=23.34 Aligned_cols=29 Identities=10% Similarity=0.247 Sum_probs=23.4
Q ss_pred CEEEEEeCCCCEEEEEecCCC---cHHHHHHHH
Q 032678 1 MQIFVKTLTGKTITLEVESSD---TIDNVKAKI 30 (136)
Q Consensus 1 MqI~Vk~~~g~~~~i~v~~~~---TV~~LK~~I 30 (136)
|+|.+. .+|+++..++.++. |..+|.+++
T Consensus 30 ~~I~i~-~~~~~~~a~L~D~~aP~Ta~~f~~~L 61 (153)
T 2nnz_A 30 MRLRIR-FESAECEVELYEEWAPETVRAIADAL 61 (153)
T ss_dssp CCEEEE-ETTEEEEECCCTTSCHHHHHHHHHTC
T ss_pred eEEEEE-ECCEEEEEEEcCCCCHHHHHHHHHhC
Confidence 567776 46788899999998 999998865
No 239
>1ibx_B Chimera of IGG binding protein G and DNA fragmentation factor 45; DFF40, DFF45, protein-protein complex, CIDE, CIDE domain complex; HET: DNA; NMR {Streptococcus SP} SCOP: d.15.2.1
Probab=21.72 E-value=70 Score=22.16 Aligned_cols=49 Identities=16% Similarity=0.268 Sum_probs=33.4
Q ss_pred CcHHHHHHHHhhhhCCCC--CCeEEEe--CCEEccCCccccccccCCCCEEEEEEE
Q 032678 21 DTIDNVKAKIQDKEGIPP--DQQRLIF--AGKQLEDGRTLADYNIQKESTLHLVLR 72 (136)
Q Consensus 21 ~TV~~LK~~I~~~~gip~--~~qrLi~--~Gk~L~D~~tL~~ygI~~gstI~l~~r 72 (136)
.++.+|+.+...+.+++. ...+|+. +|..++|+.-+..+ . ..++.+++.
T Consensus 82 ~SL~EL~~K~~~kL~l~~~~~~~~LvLeeDGTeVddEeYF~tL--p-~nT~LmvL~ 134 (145)
T 1ibx_B 82 SCLEDLRSKACDILAIDKSLTPVTLVLAEDGTIVDDDDYFLCL--P-SNTKFVALA 134 (145)
T ss_dssp SSHHHHHHHHHHHHTCSCTTSCCEEEETTTCCBCSSHHHHHHS--C-SSCBEEEEC
T ss_pred CCHHHHHHHHHHHhcCCCCccccEEEEeeCCcEEechhHhhcC--C-CCCEEEEEC
Confidence 689999999999999966 3666654 57788776544333 2 445555554
No 240
>1wfy_A Regulator of G-protein signaling 14; RAP1/RAP2 interacting protein; regulators of G-protein signaling, RAS family, structural genomics; NMR {Mus musculus} SCOP: d.15.1.5
Probab=21.16 E-value=78 Score=20.68 Aligned_cols=60 Identities=17% Similarity=0.224 Sum_probs=46.4
Q ss_pred CCCCEEEEEecCCCcHHHHHHHHhhhhCCCCCCeEEEeCCE--EccCCccccccccCCCCEEEEE
Q 032678 8 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK--QLEDGRTLADYNIQKESTLHLV 70 (136)
Q Consensus 8 ~~g~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk--~L~D~~tL~~ygI~~gstI~l~ 70 (136)
..++++.+...+.-++.++-.-|-.++|...++..+...|. .|+-...++.. +|..+.+.
T Consensus 25 p~~ksI~IksKptK~l~evLrPIL~KY~l~l~qv~v~~~g~~~pLDl~~pVs~l---dgqrl~Le 86 (104)
T 1wfy_A 25 GLERVVRISAKPTKRLQEALQPILAKHGLSLDQVVLHRPGEKQPMDLENPVSSV---ASQTLVLD 86 (104)
T ss_dssp SSSSEEEEEECSSSBTTTTTHHHHTTTTCCTTTCCBCCTTCSSCCCTTSBGGGS---SSSCEEEC
T ss_pred CCCcEEEEEecCCCcHHHHHHHHHHHcCCChhhEEEEecCCccccccCCchhhh---cCcEEEEe
Confidence 57889999999999999999999999999988887777775 45555555554 35555543
Done!