BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032682
(136 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2K2D|A Chain A, Solution Nmr Structure Of C-Terminal Domain Of Human
Pirh2. Northeast Structural Genomics Consortium (Nesg)
Target Ht2c
Length = 79
Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 44/65 (67%)
Query: 57 SLWDMSKLWSKIDQEIASTPMPAMYQNKMVWILCNDCGANSHVQFHVIAHKCLSCKSYNT 116
S DM++ W ++D E+A TPMP+ YQN V ILCNDC S VQFH++ KC C+SYNT
Sbjct: 7 SALDMTRYWRQLDDEVAQTPMPSEYQNMTVDILCNDCNGRSTVQFHILGMKCKICESYNT 66
Query: 117 RQTRG 121
Q G
Sbjct: 67 AQAGG 71
>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger
And Chy Zinc Finger Domain-Containing Protein 1 From
Mus Musculus
Length = 55
Score = 30.8 bits (68), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 16 LQFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCS 55
L+ I + VL CGH +H C +EM K Y CP+CS
Sbjct: 12 LEDIHTSRVVAHVLPCGHLLHRTCYEEMLKE-GYRCPLCS 50
>pdb|3BTN|A Chain A, Crystal Structure Of Antizyme Inhibitor, An Ornithine
Decarboxylase Homologous Protein
pdb|3BTN|B Chain B, Crystal Structure Of Antizyme Inhibitor, An Ornithine
Decarboxylase Homologous Protein
Length = 448
Score = 30.4 bits (67), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 37 LECLKEMEKHYRYTCPVCSKSLWDMSKLWSKIDQEIASTPMPAMYQNKMVWILCNDCGAN 96
L + E+ K Y+ P+ + SLW S ++DQ + S +P + N W++ ++ GA+
Sbjct: 332 LNTIPEVHKKYKEDEPLFTSSLWGPS--CDELDQIVESCLLPEL--NVGDWLIFDNMGAD 387
Query: 97 S 97
S
Sbjct: 388 S 388
>pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain.
Northeast Structural Genomics Consortium Target Ht2b
Length = 52
Score = 30.0 bits (66), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 6 NVNDNFYNFGLQFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKS 57
NV+ L+ I + VL CGH +H C +EM K Y CP+C S
Sbjct: 2 NVSQQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKE-GYRCPLCMHS 52
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 29.3 bits (64), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 20 FDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVC 54
F++ + + VL C H H +C+ + K R TCP+C
Sbjct: 33 FESRQLLRVLPCNHEFHAKCVDKWLKANR-TCPIC 66
>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase
Length = 453
Score = 28.9 bits (63), Expect = 0.88, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 35 IHLECLKEMEKHYRYTCPV-CSKSLWD-MSKLWSKIDQE 71
++ E L ++E+ YR CP C +SL D M + W K +E
Sbjct: 387 VNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKDPEE 425
>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An
Inhibitor
Length = 452
Score = 28.9 bits (63), Expect = 0.90, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 35 IHLECLKEMEKHYRYTCPV-CSKSLWD-MSKLWSKIDQE 71
++ E L ++E+ YR CP C +SL D M + W K +E
Sbjct: 386 VNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEE 424
>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly
Mutant) In Complex With N6-Benzyl Adp
Length = 452
Score = 28.9 bits (63), Expect = 0.91, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 35 IHLECLKEMEKHYRYTCPV-CSKSLWD-MSKLWSKIDQE 71
++ E L ++E+ YR CP C +SL D M + W K +E
Sbjct: 386 VNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEE 424
>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src
pdb|2SRC|A Chain A, Crystal Structure Of Human Tyrosine-protein Kinase C-src,
In Complex With Amp-pnp
Length = 452
Score = 28.9 bits (63), Expect = 0.91, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 35 IHLECLKEMEKHYRYTCPV-CSKSLWD-MSKLWSKIDQE 71
++ E L ++E+ YR CP C +SL D M + W K +E
Sbjct: 386 VNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEE 424
>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor
Length = 535
Score = 28.9 bits (63), Expect = 0.91, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 35 IHLECLKEMEKHYRYTCPV-CSKSLWD-MSKLWSKIDQE 71
++ E L ++E+ YR CP C +SL D M + W K +E
Sbjct: 469 VNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEE 507
>pdb|2HWO|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor
pdb|2HWO|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor
pdb|2HWP|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor Pd168393
pdb|2HWP|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor Pd168393
pdb|2QLQ|A Chain A, Crystal Structure Of Src Kinase Domain With Covalent
Inhibitor Rl3
pdb|2QLQ|B Chain B, Crystal Structure Of Src Kinase Domain With Covalent
Inhibitor Rl3
pdb|3F3T|A Chain A, Kinase Domain Of Csrc In Complex With Inhibitor Rl38 (Type
Iii)
pdb|3F3T|B Chain B, Kinase Domain Of Csrc In Complex With Inhibitor Rl38 (Type
Iii)
pdb|3F3U|A Chain A, Kinase Domain Of Csrc In Complex With Inhibitor Rl37 (Type
Iii)
pdb|3F3U|B Chain B, Kinase Domain Of Csrc In Complex With Inhibitor Rl37 (Type
Iii)
pdb|3F3V|A Chain A, Kinase Domain Of Csrc In Complex With Inhibitor Rl45 (Type
Ii)
pdb|3F3V|B Chain B, Kinase Domain Of Csrc In Complex With Inhibitor Rl45 (Type
Ii)
pdb|3G5D|A Chain A, Kinase Domain Of Csrc In Complex With Dasatinib
pdb|3G5D|B Chain B, Kinase Domain Of Csrc In Complex With Dasatinib
pdb|3TZ7|A Chain A, Kinase Domain Of Csrc In Complex With Rl103
pdb|3TZ7|B Chain B, Kinase Domain Of Csrc In Complex With Rl103
pdb|3TZ8|A Chain A, Kinase Domain Of Csrc In Complex With Rl104
pdb|3TZ8|B Chain B, Kinase Domain Of Csrc In Complex With Rl104
pdb|3TZ9|A Chain A, Kinase Domain Of Csrc In Complex With Rl130
pdb|3TZ9|B Chain B, Kinase Domain Of Csrc In Complex With Rl130
Length = 286
Score = 27.3 bits (59), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 1 MFPELNVNDNFYNFGLQFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPV-CSKSLW 59
++ + + ++FG+ T K V G ++ E L ++E+ YR CP C +SL
Sbjct: 188 LYGRFTIKSDVWSFGILLTELTTKG-RVPYPG-MVNREVLDQVERGYRMPCPPECPESLH 245
Query: 60 D-MSKLWSKIDQE 71
D M + W K +E
Sbjct: 246 DLMCQCWRKDPEE 258
>pdb|3SVV|A Chain A, Crystal Structure Of T338c C-Src Covalently Bound To
Vinylsulfonamide- Pyrazolopyrimidine 9
pdb|3SVV|B Chain B, Crystal Structure Of T338c C-Src Covalently Bound To
Vinylsulfonamide- Pyrazolopyrimidine 9
Length = 286
Score = 27.3 bits (59), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 1 MFPELNVNDNFYNFGLQFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPV-CSKSLW 59
++ + + ++FG+ T K V G ++ E L ++E+ YR CP C +SL
Sbjct: 188 LYGRFTIKSDVWSFGILLTELTTKG-RVPYPG-MVNREVLDQVERGYRMPCPPECPESLH 245
Query: 60 D-MSKLWSKIDQE 71
D M + W K +E
Sbjct: 246 DLMCQCWRKDPEE 258
>pdb|1YI6|A Chain A, C-Term Tail Segment Of Human Tyrosine Kinase (258-533)
pdb|1YI6|B Chain B, C-Term Tail Segment Of Human Tyrosine Kinase (258-533)
Length = 276
Score = 27.3 bits (59), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 1 MFPELNVNDNFYNFGLQFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPV-CSKSLW 59
++ + + ++FG+ T K V G ++ E L ++E+ YR CP C +SL
Sbjct: 178 LYGRFTIKSDVWSFGILLTELTTKG-RVPYPG-MVNREVLDQVERGYRMPCPPECPESLH 235
Query: 60 D-MSKLWSKIDQE 71
D M + W K +E
Sbjct: 236 DLMCQCWRKEPEE 248
>pdb|3DQW|A Chain A, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
pdb|3DQW|B Chain B, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
pdb|3DQW|C Chain C, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
pdb|3DQW|D Chain D, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
Length = 286
Score = 27.3 bits (59), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 1 MFPELNVNDNFYNFGLQFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPV-CSKSLW 59
++ + + ++FG+ T K V G ++ E L ++E+ YR CP C +SL
Sbjct: 188 LYGRFTIKSDVWSFGILLTELTTKG-RVPYPG-MVNREVLDQVERGYRMPCPPECPESLH 245
Query: 60 D-MSKLWSKIDQE 71
D M + W K +E
Sbjct: 246 DLMCQCWRKDPEE 258
>pdb|1YOJ|A Chain A, Crystal Structure Of Src Kinase Domain
pdb|1YOJ|B Chain B, Crystal Structure Of Src Kinase Domain
pdb|1YOM|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Purvalanol A
pdb|1YOM|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Purvalanol A
Length = 283
Score = 27.3 bits (59), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 1 MFPELNVNDNFYNFGLQFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPV-CSKSLW 59
++ + + ++FG+ T K V G ++ E L ++E+ YR CP C +SL
Sbjct: 185 LYGRFTIKSDVWSFGILLTELTTKG-RVPYPG-MVNREVLDQVERGYRMPCPPECPESLH 242
Query: 60 D-MSKLWSKIDQE 71
D M + W K +E
Sbjct: 243 DLMCQCWRKEPEE 255
>pdb|1YOL|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Cgp77675
pdb|1YOL|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Cgp77675
Length = 283
Score = 27.3 bits (59), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 1 MFPELNVNDNFYNFGLQFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPV-CSKSLW 59
++ + + ++FG+ T K V G ++ E L ++E+ YR CP C +SL
Sbjct: 185 LYGRFTIKSDVWSFGILLTELTTKG-RVPYPG-MVNREVLDQVERGYRMPCPPECPESLH 242
Query: 60 D-MSKLWSKIDQE 71
D M + W K +E
Sbjct: 243 DLMCQCWRKEPEE 255
>pdb|2QQ7|A Chain A, Crystal Structure Of Drug Resistant Src Kinase Domain With
Irreversible Inhibitor
pdb|2QQ7|B Chain B, Crystal Structure Of Drug Resistant Src Kinase Domain With
Irreversible Inhibitor
pdb|2QI8|A Chain A, Crystal Structure Of Drug Resistant Src Kinase Domain
pdb|2QI8|B Chain B, Crystal Structure Of Drug Resistant Src Kinase Domain
pdb|3F3W|A Chain A, Drug Resistant Csrc Kinase Domain In Complex With
Inhibitor Rl45 (Type Ii)
pdb|3F3W|B Chain B, Drug Resistant Csrc Kinase Domain In Complex With
Inhibitor Rl45 (Type Ii)
pdb|3LOK|A Chain A, Drug Resistant Csrc Kinase Domain In Complex With Covalent
Inhibitor Pd168393
pdb|3LOK|B Chain B, Drug Resistant Csrc Kinase Domain In Complex With Covalent
Inhibitor Pd168393
Length = 286
Score = 27.3 bits (59), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 1 MFPELNVNDNFYNFGLQFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPV-CSKSLW 59
++ + + ++FG+ T K V G ++ E L ++E+ YR CP C +SL
Sbjct: 188 LYGRFTIKSDVWSFGILLTELTTKG-RVPYPG-MVNREVLDQVERGYRMPCPPECPESLH 245
Query: 60 D-MSKLWSKIDQE 71
D M + W K +E
Sbjct: 246 DLMCQCWRKDPEE 258
>pdb|3OEZ|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain Complexed With Imatinib
pdb|3OEZ|B Chain B, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain Complexed With Imatinib
pdb|3OF0|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain
pdb|3OF0|B Chain B, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain
pdb|3QLF|A Chain A, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Pyrazolopyrimidine
5
pdb|3QLF|B Chain B, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Pyrazolopyrimidine
5
pdb|3QLG|A Chain A, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Dasatinib
pdb|3QLG|B Chain B, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Dasatinib
Length = 286
Score = 27.3 bits (59), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 1 MFPELNVNDNFYNFGLQFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPV-CSKSLW 59
++ + + ++FG+ T K V G ++ E L ++E+ YR CP C +SL
Sbjct: 188 LYGRFTIKSDVWSFGILLTELTTKG-RVPYPG-MVNREVLDQVERGYRMPCPPECPESLH 245
Query: 60 D-MSKLWSKIDQE 71
D M + W K +E
Sbjct: 246 DLMCQCWRKDPEE 258
>pdb|3GEQ|A Chain A, Structural Basis For The Chemical Rescue Of Src Kinase
Activity
pdb|3GEQ|B Chain B, Structural Basis For The Chemical Rescue Of Src Kinase
Activity
Length = 286
Score = 27.3 bits (59), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 1 MFPELNVNDNFYNFGLQFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPV-CSKSLW 59
++ + + ++FG+ T K V G ++ E L ++E+ YR CP C +SL
Sbjct: 188 LYGRFTIKSDVWSFGILLTELTTKG-RVPYPG-MVNREVLDQVERGYRMPCPPECPESLH 245
Query: 60 D-MSKLWSKIDQE 71
D M + W K +E
Sbjct: 246 DLMCQCWRKDPEE 258
>pdb|3G6H|A Chain A, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation
pdb|3G6H|B Chain B, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation
Length = 286
Score = 27.3 bits (59), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 1 MFPELNVNDNFYNFGLQFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPV-CSKSLW 59
++ + + ++FG+ T K V G ++ E L ++E+ YR CP C +SL
Sbjct: 188 LYGRFTIKSDVWSFGILLTELTTKG-RVPYPG-MVNREVLDQVERGYRMPCPPECPESLH 245
Query: 60 D-MSKLWSKIDQE 71
D M + W K +E
Sbjct: 246 DLMCQCWRKDPEE 258
>pdb|2BDF|A Chain A, Src Kinase In Complex With Inhibitor Ap23451
pdb|2BDF|B Chain B, Src Kinase In Complex With Inhibitor Ap23451
pdb|2BDJ|A Chain A, Src Kinase In Complex With Inhibitor Ap23464
Length = 279
Score = 27.3 bits (59), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 1 MFPELNVNDNFYNFGLQFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPV-CSKSLW 59
++ + + ++FG+ T K V G ++ E L ++E+ YR CP C +SL
Sbjct: 181 LYGRFTIKSDVWSFGILLTELTTKG-RVPYPG-MVNREVLDQVERGYRMPCPPECPESLH 238
Query: 60 D-MSKLWSKIDQE 71
D M + W K +E
Sbjct: 239 DLMCQCWRKEPEE 251
>pdb|2OIQ|A Chain A, Crystal Structure Of Chicken C-Src Kinase Domain In
Complex With The Cancer Drug Imatinib.
pdb|2OIQ|B Chain B, Crystal Structure Of Chicken C-Src Kinase Domain In
Complex With The Cancer Drug Imatinib.
pdb|3D7T|B Chain B, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
pdb|3DQX|A Chain A, Chicken C-Src Kinase Domain In Complex With Atpgs
pdb|3DQX|B Chain B, Chicken C-Src Kinase Domain In Complex With Atpgs
pdb|3EN4|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp121, A Multitargeted
Kinase Inhibitor
pdb|3EN4|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp121, A Multitargeted
Kinase Inhibitor
pdb|3EN5|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp494, A Multitargeted
Kinase Inhibitor
pdb|3EN5|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp494, A Multitargeted
Kinase Inhibitor
pdb|3EN6|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp102, A Multitargeted
Kinase Inhibitor
pdb|3EN6|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp102, A Multitargeted
Kinase Inhibitor
pdb|3EN7|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With S1, A Multitargeted Kinase
Inhibitor
pdb|3EN7|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With S1, A Multitargeted Kinase
Inhibitor
pdb|3EL7|A Chain A, Crystal Structure Of C-Src In Complex With
Pyrazolopyrimidine 3
pdb|3EL8|A Chain A, Crystal Structure Of C-Src In Complex With
Pyrazolopyrimidine 5
pdb|3EL8|B Chain B, Crystal Structure Of C-Src In Complex With
Pyrazolopyrimidine 5
pdb|3F6X|A Chain A, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3F6X|B Chain B, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3F6X|C Chain C, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3F6X|D Chain D, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3G6G|A Chain A, Equally Potent Inhibition Of C-Src And Abl By Compounds
That Recognize Inactive Kinase Conformations
pdb|3G6G|B Chain B, Equally Potent Inhibition Of C-Src And Abl By Compounds
That Recognize Inactive Kinase Conformations
pdb|4AGW|A Chain A, Discovery Of A Small Molecule Type Ii Inhibitor Of Wild-
Type And Gatekeeper Mutants Of Bcr-Abl, Pdgfralpha, Kit,
And Src Kinases
pdb|4AGW|B Chain B, Discovery Of A Small Molecule Type Ii Inhibitor Of Wild-
Type And Gatekeeper Mutants Of Bcr-Abl, Pdgfralpha, Kit,
And Src Kinases
pdb|3UQF|A Chain A, C-Src Kinase Domain In Complex With Bki Rm-1-89
pdb|3UQF|B Chain B, C-Src Kinase Domain In Complex With Bki Rm-1-89
pdb|3UQG|A Chain A, C-Src Kinase Domain In Complex With Bumpless Bki Analog
Uw1243
pdb|3UQG|B Chain B, C-Src Kinase Domain In Complex With Bumpless Bki Analog
Uw1243
pdb|4DGG|A Chain A, C-Src Kinase Domain In Complex With Rm-1-176
pdb|4DGG|B Chain B, C-Src Kinase Domain In Complex With Rm-1-176
Length = 286
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 1 MFPELNVNDNFYNFGLQFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPV-CSKSLW 59
++ + + ++FG+ T K V G ++ E L ++E+ YR CP C +SL
Sbjct: 188 LYGRFTIKSDVWSFGILLTELTTKG-RVPYPG-MVNREVLDQVERGYRMPCPPECPESLH 245
Query: 60 D-MSKLWSKIDQE 71
D M + W K +E
Sbjct: 246 DLMCQCWRKDPEE 258
>pdb|3U4W|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor
Mc4b
pdb|3U51|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor
Mc1
pdb|3U51|B Chain B, Src In Complex With Dna-Templated Macrocyclic Inhibitor
Mc1
Length = 275
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 1 MFPELNVNDNFYNFGLQFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPV-CSKSLW 59
++ + + ++FG+ T K V G ++ E L ++E+ YR CP C +SL
Sbjct: 177 LYGRFTIKSDVWSFGILLTELTTKG-RVPYPG-MVNREVLDQVERGYRMPCPPECPESLH 234
Query: 60 D-MSKLWSKIDQE 71
D M + W K +E
Sbjct: 235 DLMCQCWRKDPEE 247
>pdb|3D7U|B Chain B, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
pdb|3D7U|D Chain D, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
Length = 277
Score = 26.9 bits (58), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 1 MFPELNVNDNFYNFGLQFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPV-CSKSLW 59
++ + + ++FG+ T K V G ++ E L ++E+ YR CP C +SL
Sbjct: 179 LYGRFTIKSDVWSFGILLTELTTKG-RVPYPG-MVNREVLDQVERGYRMPCPPECPESLH 236
Query: 60 D-MSKLWSKIDQE 71
D M + W K +E
Sbjct: 237 DLMCQCWRKDPEE 249
>pdb|3DZU|A Chain A, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Bvt.13, 9-Cis Retinoic Acid And Ncoa2
Peptide
pdb|3DZY|A Chain A, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Rosiglitazone, 9-Cis Retinoic Acid And
Ncoa2 Peptide
pdb|3E00|A Chain A, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Gw9662, 9-Cis Retinoic Acid And Ncoa2
Peptide
Length = 467
Score = 26.9 bits (58), Expect = 3.5, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 89 LCNDCGANSHVQFHVIAHKCLSCKSYNTRQTRGDTATTC 127
+C CG S + H + C CK + R R D TC
Sbjct: 139 ICAICGDRSSGK-HYGVYSCEGCKGFFKRTVRKDLTYTC 176
>pdb|3DZU|D Chain D, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Bvt.13, 9-Cis Retinoic Acid And Ncoa2
Peptide
pdb|3DZY|D Chain D, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Rosiglitazone, 9-Cis Retinoic Acid And
Ncoa2 Peptide
pdb|3E00|D Chain D, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Gw9662, 9-Cis Retinoic Acid And Ncoa2
Peptide
Length = 419
Score = 26.9 bits (58), Expect = 3.8, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 83 NKMVWILCNDCGANSHVQFHVIAHKCLSCKSYNTRQTR 120
N ++ I C CG + FH H C CK + R R
Sbjct: 46 NSLMAIECRVCGDKAS-GFHYGVHACEGCKGFFRRTIR 82
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 26.2 bits (56), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 43/109 (39%), Gaps = 16/109 (14%)
Query: 15 GLQFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLWDMSKLWSKIDQEIAS 74
G I + I CGH +CL++ K+ TCP C K + I S
Sbjct: 16 GYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-TCPTCRKKINHKRYHPIYIGSGTVS 74
Query: 75 TPM-----PAMYQNKMVWILCNDCGANSHVQFHVIAHKCL--SCKSYNT 116
P+ + QN + I+ +CG HV +CL S K+ NT
Sbjct: 75 CPICMDGYSEIVQNGRL-IVSTECG-------HVFCSQCLRDSLKNANT 115
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 25.8 bits (55), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 15 GLQFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSL 58
G I + I CGH +CL++ K+ TCP C K +
Sbjct: 24 GYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-TCPTCRKKI 66
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 25.8 bits (55), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 15 GLQFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSL 58
G I + I CGH +CL++ K+ TCP C K +
Sbjct: 19 GYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-TCPTCRKKI 61
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 25.8 bits (55), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 30 RCGHTIHLECLKEMEKHYRYTCPVC 54
RCGH H EC+ +M TCP+C
Sbjct: 26 RCGHGFHAECV-DMWLGSHSTCPLC 49
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 25.8 bits (55), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 15 GLQFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSL 58
G I + I CGH +CL++ K+ TCP C K +
Sbjct: 12 GYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-TCPTCRKKI 54
>pdb|2CT2|A Chain A, Solution Structure Of The Ring Domain Of The Tripartite
Motif Protein 32
Length = 88
Score = 25.8 bits (55), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 28 VLRCGHTIHLECLKEMEKHY--RYTCPVCSK 56
+L CGHTI +CL+++ CP CSK
Sbjct: 34 LLHCGHTICRQCLEKLLASSINGVRCPFCSK 64
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.133 0.442
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,226,766
Number of Sequences: 62578
Number of extensions: 152587
Number of successful extensions: 856
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 844
Number of HSP's gapped (non-prelim): 48
length of query: 136
length of database: 14,973,337
effective HSP length: 88
effective length of query: 48
effective length of database: 9,466,473
effective search space: 454390704
effective search space used: 454390704
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 46 (22.3 bits)