BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032682
(136 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q96PM5|ZN363_HUMAN RING finger and CHY zinc finger domain-containing protein 1 OS=Homo
sapiens GN=RCHY1 PE=1 SV=1
Length = 261
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 49/94 (52%), Positives = 61/94 (64%), Gaps = 1/94 (1%)
Query: 28 VLRCGHTIHLECLKEMEKHYRYTCPVCSKSLWDMSKLWSKIDQEIASTPMPAMYQNKMVW 87
VL CGH +H C +EM K Y CP+C S DM++ W ++D E+A TPMP+ YQN V
Sbjct: 161 VLPCGHLLHRTCYEEMLKE-GYRCPLCMHSALDMTRYWRQLDDEVAQTPMPSEYQNMTVD 219
Query: 88 ILCNDCGANSHVQFHVIAHKCLSCKSYNTRQTRG 121
ILCNDC S VQFH++ KC C+SYNT Q G
Sbjct: 220 ILCNDCNGRSTVQFHILGMKCKICESYNTAQAGG 253
>sp|Q9CR50|ZN363_MOUSE RING finger and CHY zinc finger domain-containing protein 1 OS=Mus
musculus GN=Rchy1 PE=1 SV=1
Length = 261
Score = 102 bits (255), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 49/94 (52%), Positives = 60/94 (63%), Gaps = 1/94 (1%)
Query: 28 VLRCGHTIHLECLKEMEKHYRYTCPVCSKSLWDMSKLWSKIDQEIASTPMPAMYQNKMVW 87
VL CGH +H C +EM K Y CP+C S DM++ W ++D E+A TPMP+ YQN V
Sbjct: 161 VLPCGHLLHRTCYEEMLKE-GYRCPLCMHSALDMTRYWRQLDTEVAQTPMPSEYQNVTVD 219
Query: 88 ILCNDCGANSHVQFHVIAHKCLSCKSYNTRQTRG 121
ILCNDC S VQFH++ KC C SYNT Q G
Sbjct: 220 ILCNDCNGRSTVQFHILGMKCKLCDSYNTAQAGG 253
>sp|O14099|YERG_SCHPO Uncharacterized RING finger protein C2F3.16 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC2F3.16 PE=4 SV=1
Length = 425
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 57/100 (57%), Gaps = 1/100 (1%)
Query: 17 QFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLWDMSKLWSKIDQEIASTP 76
+++F++ + + L C H +H C +E + Y CP C K++ +++ L+ +D EI P
Sbjct: 276 EYMFNSRERVIFLSCSHPLHQRCHEEYIR-TNYRCPTCYKTIINVNSLFRILDMEIERQP 334
Query: 77 MPAMYQNKMVWILCNDCGANSHVQFHVIAHKCLSCKSYNT 116
MP Y + I CNDC + ++H + HKC SC SYNT
Sbjct: 335 MPYPYNTWISTIRCNDCNSRCDTKYHFLGHKCNSCHSYNT 374
>sp|Q9BWF2|TRAIP_HUMAN TRAF-interacting protein OS=Homo sapiens GN=TRAIP PE=1 SV=1
Length = 469
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 20 FDTMKDITVLRCGHTIHLECLKE-MEKHYRYTCPVC 54
FD +D+ + CGHT HL+CL + E TCP C
Sbjct: 14 FDHSRDVAAIHCGHTFHLQCLIQWFETAPSRTCPQC 49
>sp|Q8VIG6|TRAIP_MOUSE TRAF-interacting protein OS=Mus musculus GN=Traip PE=1 SV=2
Length = 470
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 20 FDTMKDITVLRCGHTIHLECLKE-MEKHYRYTCPVC 54
FD +D+ + CGHT HL+CL + E TCP C
Sbjct: 14 FDHSRDVAAIHCGHTFHLQCLIQWFETAPSRTCPQC 49
>sp|Q8BGI1|RNF24_MOUSE RING finger protein 24 OS=Mus musculus GN=Rnf24 PE=2 SV=1
Length = 148
Score = 35.8 bits (81), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 20 FDTMKDITVLRCGHTIHLECL-KEMEKHYRYTCPVCSKSLWDMSKLWSKIDQEIASTPMP 78
F ++ + C H H +CL K +E R CP+C+ + +++L SK D+ P+P
Sbjct: 85 FKPRDELGICPCKHAFHRKCLVKWLE--VRKVCPLCNMPVLQLAQLHSKQDRGPPQEPLP 142
Query: 79 A 79
Sbjct: 143 G 143
>sp|Q9Y225|RNF24_HUMAN RING finger protein 24 OS=Homo sapiens GN=RNF24 PE=1 SV=1
Length = 148
Score = 35.8 bits (81), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 20 FDTMKDITVLRCGHTIHLECL-KEMEKHYRYTCPVCSKSLWDMSKLWSKIDQEIASTPMP 78
F ++ + C H H +CL K +E R CP+C+ + +++L SK D+ P+P
Sbjct: 85 FKPRDELGICPCKHAFHRKCLIKWLE--VRKVCPLCNMPVLQLAQLHSKQDRGPPQGPLP 142
Query: 79 A 79
Sbjct: 143 G 143
>sp|Q9ZU51|RHA2B_ARATH Probable E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana
GN=RHA2B PE=1 SV=2
Length = 147
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 26/58 (44%)
Query: 20 FDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLWDMSKLWSKIDQEIASTPM 77
T +++ L C H H +CL+ +H + CP+C L D I++ P+
Sbjct: 81 LKTGEEVRKLDCRHVFHKQCLEGWLQHLNFNCPLCRSPLLPHHHQGHGSDASISAFPL 138
>sp|Q08109|HRD1_YEAST ERAD-associated E3 ubiquitin-protein ligase HRD1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=HRD1 PE=1
SV=1
Length = 551
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Query: 29 LRCGHTIHLECLKE-MEKHYRYTCPVCSKSLWD 60
L CGH +HL CLK ME+ TCP+C ++D
Sbjct: 375 LPCGHILHLSCLKNWMER--SQTCPICRLPVFD 405
>sp|Q7YRV4|RO52_BOVIN E3 ubiquitin-protein ligase TRIM21 OS=Bos taurus GN=TRIM21 PE=2
SV=1
Length = 469
Score = 33.1 bits (74), Expect = 0.57, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 20 FDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSK 56
D M + + CGH+ EC+ E+ K CPVC +
Sbjct: 20 LDPMVEPMSIECGHSFCQECISEVGKEGGSVCPVCRR 56
>sp|O74757|HRD1_SCHPO ERAD-associated E3 ubiquitin-protein ligase hrd1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=hrd1 PE=1 SV=1
Length = 677
Score = 32.7 bits (73), Expect = 0.65, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 3/31 (9%)
Query: 29 LRCGHTIHLECLKE-MEKHYRYTCPVCSKSL 58
L CGH +H CL+ +E+ + TCP+C +S+
Sbjct: 326 LPCGHILHFHCLRNWLER--QQTCPICRRSV 354
>sp|Q810I2|TRI50_MOUSE E3 ubiquitin-protein ligase TRIM50 OS=Mus musculus GN=Trim50 PE=2
SV=1
Length = 483
Score = 32.3 bits (72), Expect = 0.80, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 20 FDTMKDITVLRCGHTIHLECLKEMEKHY--RYTCPVCSKSL 58
+ K+ +L+CGH+ +CL + +H CPVC +S+
Sbjct: 20 LEVFKEPLMLQCGHSYCKDCLDNLSQHLDSELCCPVCRQSV 60
>sp|Q5SWK7|RN145_MOUSE RING finger protein 145 OS=Mus musculus GN=Rnf145 PE=2 SV=1
Length = 663
Score = 32.3 bits (72), Expect = 0.81, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 20 FDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLWDMSKLWSKIDQEIASTPMPA 79
+ MK + C H H CLK+ + + TCP+C L + S+L + E A P
Sbjct: 541 YQDMKSAVITPCSHFFHAGCLKKW-LYVQDTCPLCHCHLKNSSQL-PGLGTEAAPQPPAG 598
Query: 80 MYQN 83
QN
Sbjct: 599 AEQN 602
>sp|Q75CC8|HRD1_ASHGO ERAD-associated E3 ubiquitin-protein ligase HRD1 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=HRD1 PE=3 SV=2
Length = 575
Score = 32.3 bits (72), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 44/102 (43%), Gaps = 19/102 (18%)
Query: 28 VLRCGHTIHLECLKE-MEKHYRYTCPVCSKSLWDMSKLWSKIDQEIASTPMPAMYQNKMV 86
+L CGH +H CLK ME+ TCP+C S++ Q TP P + Q +
Sbjct: 342 MLPCGHMLHFGCLKSWMER--SQTCPICRLSVFANDSNSHATTQAREQTP-PDLLQER-- 396
Query: 87 WILCNDCGANSHVQFHVIAHKCLSCKSYN----TRQTRGDTA 124
G + H+ VI + +S +S + T RG T
Sbjct: 397 -------GIDEHID--VIGMQDMSVQSISLHEGTAVRRGTTG 429
>sp|Q5M929|RN135_RAT E3 ubiquitin-protein ligase RNF135 OS=Rattus norvegicus GN=Rnf135
PE=2 SV=1
Length = 415
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 19/72 (26%)
Query: 27 TVLRCGHTIHLECLKEMEKHYR-------YTCPVCSKS------------LWDMSKLWSK 67
T L CGH+ L+CLK++ R + CP+C K L D+ + +
Sbjct: 32 TTLPCGHSFCLQCLKDLWVSKRAGVDSCPWACPICRKGPSAKPVLHKNPLLQDLVDKYRQ 91
Query: 68 IDQEIASTPMPA 79
E+ + P PA
Sbjct: 92 AALELEAGPEPA 103
>sp|Q0MW30|NEU1B_MOUSE E3 ubiquitin-protein ligase NEURL1B OS=Mus musculus GN=Neurl1b PE=1
SV=1
Length = 546
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 20 FDTMKDITVLRCGHTIHLE-CLKEMEKHYRYTCPVCSKSLWDMSKLW 65
FD+ D + CGH C + + R CP+C + + D+ K++
Sbjct: 498 FDSEVDTVIYTCGHMCLCHGCGLRLRRQARACCPICRRPIKDVIKIY 544
>sp|Q7ZWF4|RN145_DANRE RING finger protein 145 OS=Danio rerio GN=rnf145 PE=2 SV=1
Length = 685
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 20 FDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLWDMSKLWSKIDQEIASTPMPA 79
F MK + C H H CLK+ + + TCP+C L S+L + PA
Sbjct: 541 FQDMKSAVITPCSHFFHAACLKKW-LYVQETCPLCHGQL--KSQLQPTSSPGTPTQGTPA 597
Query: 80 MYQN 83
QN
Sbjct: 598 ANQN 601
>sp|O88196|TTC3_MOUSE E3 ubiquitin-protein ligase TTC3 OS=Mus musculus GN=Ttc3 PE=2 SV=2
Length = 1979
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 24 KDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKS 57
K++ VL+CGH H C K+ K + TCP C S
Sbjct: 1941 KNMRVLKCGHKFHKGCFKQWLKG-QSTCPTCGSS 1973
>sp|A8MQ27|NEU1B_HUMAN E3 ubiquitin-protein ligase NEURL1B OS=Homo sapiens GN=NEURL1B PE=1
SV=1
Length = 555
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 20 FDTMKDITVLRCGHT-IHLECLKEMEKHYRYTCPVCSKSLWDMSKLW 65
FD D + CGH + C +++ R CP+C + + D+ K++
Sbjct: 507 FDGEVDTVIYTCGHMCLCHSCGLRLKRQARACCPICRRPIKDVIKIY 553
>sp|Q810I1|TRI50_RAT E3 ubiquitin-protein ligase TRIM50 OS=Rattus norvegicus GN=Trim50
PE=2 SV=1
Length = 483
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 20 FDTMKDITVLRCGHTIHLECLKEMEKHY--RYTCPVCSKSL 58
+ K+ +L+CGH+ CL + +H CPVC +S+
Sbjct: 20 LEVFKEPLMLQCGHSYCKNCLDSLSEHLDSELRCPVCRQSV 60
>sp|Q96MT1|RN145_HUMAN RING finger protein 145 OS=Homo sapiens GN=RNF145 PE=2 SV=2
Length = 663
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Query: 20 FDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLWDMSKLWSKIDQEIASTPMPA 79
+ MK + C H H CLK+ + + TCP+C L + S+L + E P
Sbjct: 541 YQDMKSAVITPCSHFFHAGCLKKW-LYVQETCPLCHCHLKNSSQL-PGLGTEPVLQPHAG 598
Query: 80 MYQNKM 85
QN M
Sbjct: 599 AEQNVM 604
>sp|Q6IRP0|R126B_XENLA RING finger protein 126-B OS=Xenopus laevis GN=rnf126-b PE=2 SV=1
Length = 312
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 8/63 (12%)
Query: 2 FPELNVNDNFYNFGLQ-----FIFDTMKDITVLRCGHTIHLECLKE-MEKHYRYTCPVCS 55
P + + + FGL+ + + + L C H H +C+ +E+H TCPVC
Sbjct: 212 LPTIQITEEHVGFGLECPVCKEDYTVGESVRQLPCNHLFHNDCIIPWLEQHD--TCPVCR 269
Query: 56 KSL 58
KSL
Sbjct: 270 KSL 272
>sp|Q9H0F5|RNF38_HUMAN RING finger protein 38 OS=Homo sapiens GN=RNF38 PE=1 SV=4
Length = 515
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 20 FDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVC 54
F++ + + VL C H H +C+ + K R TCP+C
Sbjct: 470 FESRQLLRVLPCNHEFHAKCVDKWLKANR-TCPIC 503
>sp|Q08CG8|RNF44_DANRE RING finger protein 44 OS=Danio rerio GN=rnf44 PE=2 SV=1
Length = 448
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 20 FDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVC 54
F++ + + VL C H H +C+ + K R TCP+C
Sbjct: 403 FESRQLLRVLPCNHEFHAKCVDKWLKTNR-TCPIC 436
>sp|Q8CIK8|RFWD3_MOUSE E3 ubiquitin-protein ligase RFWD3 OS=Mus musculus GN=Rfwd3 PE=2
SV=1
Length = 774
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 26 ITVLRCGHTIHLECLKEMEKHYRYTCPVCSK 56
I+ LRCGH C+ + K CP C+K
Sbjct: 303 ISALRCGHLFGFRCISKWLKGQTRKCPQCNK 333
>sp|Q7L0R7|RNF44_HUMAN RING finger protein 44 OS=Homo sapiens GN=RNF44 PE=2 SV=1
Length = 432
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 20 FDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVC 54
F+ + + VL C H H +C+ + K R TCP+C
Sbjct: 387 FEARQLLRVLPCNHEFHTKCVDKWLKANR-TCPIC 420
>sp|Q8BI21|RNF38_MOUSE RING finger protein 38 OS=Mus musculus GN=Rnf38 PE=2 SV=1
Length = 518
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 20 FDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVC 54
F++ + + VL C H H +C+ + K R TCP+C
Sbjct: 473 FESRQLLRVLPCNHEFHAKCVDKWLKGNR-TCPIC 506
>sp|Q9D4H7|LONF3_MOUSE LON peptidase N-terminal domain and RING finger protein 3 OS=Mus
musculus GN=Lonrf3 PE=2 SV=1
Length = 753
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 31 CGHTIHLECLKEMEKHYRYTCPVCSKSLWDM--SKLWSK--IDQEIASTPMPAMYQNK 84
CGHT L+CL+ H CP+C L S+ +SK I +E+ +T +P ++ +
Sbjct: 476 CGHTFCLKCLERCLDH-NAKCPLCKDVLLQCLPSRKYSKNVILEELIATFLPEEFKER 532
>sp|Q9R049|AMFR_MOUSE E3 ubiquitin-protein ligase AMFR OS=Mus musculus GN=Amfr PE=1 SV=2
Length = 643
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Query: 4 ELNVNDNFYNFGLQFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSL 58
EL VN++ +D+M+ L CGH H CL+ + +CP C SL
Sbjct: 333 ELAVNND----DCAICWDSMQAARKLPCGHLFHNSCLRSWLEQ-DTSCPTCRMSL 382
>sp|Q5RBG2|TRI35_PONAB Tripartite motif-containing protein 35 OS=Pongo abelii GN=TRIM35
PE=2 SV=1
Length = 492
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 20 FDTMKDITVLRCGHTIHLECLKE-MEKHYRYTCPVC 54
+D +D LRCGH C+ E TCPVC
Sbjct: 25 YDPFRDAVTLRCGHNFCRGCVSRCWEVQVSPTCPVC 60
>sp|Q9UKV5|AMFR_HUMAN E3 ubiquitin-protein ligase AMFR OS=Homo sapiens GN=AMFR PE=1 SV=2
Length = 643
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Query: 4 ELNVNDNFYNFGLQFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSL 58
EL VN++ +D+M+ L CGH H CL+ + +CP C SL
Sbjct: 333 ELAVNND----DCAICWDSMQAARKLPCGHLFHNSCLRSWLEQ-DTSCPTCRMSL 382
>sp|Q9UPQ4|TRI35_HUMAN Tripartite motif-containing protein 35 OS=Homo sapiens GN=TRIM35
PE=1 SV=2
Length = 493
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 20 FDTMKDITVLRCGHTIHLECLKE-MEKHYRYTCPVC 54
+D +D LRCGH C+ E TCPVC
Sbjct: 25 YDPFRDAVTLRCGHNFCRGCVSRCWEVQVSPTCPVC 60
>sp|Q9ZT50|RHA2A_ARATH E3 ubiquitin-protein ligase RHA2A OS=Arabidopsis thaliana GN=RHA2A
PE=1 SV=1
Length = 155
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 24 KDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSL 58
+++ L C H H +CL+ + +TCP+C +L
Sbjct: 97 EEVRKLECRHVFHKKCLEGWLHQFNFTCPLCRSAL 131
>sp|Q4R6Y5|ZNRF4_MACFA Zinc/RING finger protein 4 OS=Macaca fascicularis GN=ZNRF4 PE=2
SV=1
Length = 429
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 26 ITVLRCGHTIHLECLKE-MEKHYRYTCPVCSKSL 58
+ +L C HT H +C+ + R +CPVC +S+
Sbjct: 322 LKILPCSHTYHCKCIDPWFSQAPRRSCPVCKQSV 355
>sp|Q20798|HRD1_CAEEL E3 ubiquitin-protein ligase hrd-1 OS=Caenorhabditis elegans
GN=sel-11 PE=3 SV=1
Length = 610
Score = 30.8 bits (68), Expect = 2.9, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 29 LRCGHTIHLECLKEMEKHYRYTCPVCSKSLW 59
L C H H CL+ + + TCP C +W
Sbjct: 308 LPCSHVFHAHCLRSWFQR-QQTCPTCRTDIW 337
>sp|A8Y4B2|HRD1_CAEBR E3 ubiquitin-protein ligase hrd-1 OS=Caenorhabditis briggsae
GN=sel-11 PE=3 SV=2
Length = 622
Score = 30.8 bits (68), Expect = 2.9, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 29 LRCGHTIHLECLKEMEKHYRYTCPVCSKSLW 59
L C H H CL+ + + TCP C +W
Sbjct: 308 LPCSHVFHAHCLRSWFQR-QQTCPTCRTDIW 337
>sp|Q9Y7K6|YGI4_SCHPO Uncharacterized RING finger protein C2A9.04c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC2A9.04c PE=4 SV=1
Length = 741
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 8/57 (14%)
Query: 8 NDNFYNFGLQFIFDTM-----KDITVLRCGHTIHLECLKE-MEKHYRYTCPVCSKSL 58
ND + +D M K T + CGH CL++ +E H TCP+C K +
Sbjct: 99 NDQLMDLTCPICYDDMNENDEKQATKMPCGHIFGKNCLQKWLENH--CTCPLCRKEV 153
>sp|Q8WWF5|ZNRF4_HUMAN Zinc/RING finger protein 4 OS=Homo sapiens GN=ZNRF4 PE=2 SV=3
Length = 429
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 26 ITVLRCGHTIHLECLKE-MEKHYRYTCPVCSKSL 58
+ +L C HT H +C+ + R +CPVC +S+
Sbjct: 322 LKILPCSHTYHCKCIDPWFSQAPRRSCPVCKQSV 355
>sp|Q8VYC8|RIN2_ARATH E3 ubiquitin protein ligase RIN2 OS=Arabidopsis thaliana GN=RIN2
PE=1 SV=1
Length = 578
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Query: 29 LRCGHTIHLECLK---EMEKHYRYTCPVCSKSLW 59
L C H HL CL+ + + Y+CP C K L+
Sbjct: 350 LHCNHLFHLGCLRSWLDQGLNEVYSCPTCRKPLF 383
>sp|Q757D9|BRE1_ASHGO E3 ubiquitin-protein ligase BRE1 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=BRE1
PE=3 SV=1
Length = 643
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 15/35 (42%)
Query: 24 KDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSL 58
KD + CGH +C KE CP C+K
Sbjct: 599 KDTVIKTCGHVFCADCCKERLAARMRKCPTCNKGF 633
>sp|Q23985|DTX_DROME Protein deltex OS=Drosophila melanogaster GN=dx PE=1 SV=2
Length = 738
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 8/37 (21%)
Query: 26 ITVLRCGHTIHLECL--------KEMEKHYRYTCPVC 54
I++ RC H +HL+CL EM K+ CPVC
Sbjct: 564 ISLSRCQHLMHLQCLNGMIIAQQNEMNKNLFIECPVC 600
>sp|O35484|AZIN1_MOUSE Antizyme inhibitor 1 OS=Mus musculus GN=Azin1 PE=1 SV=1
Length = 448
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 37 LECLKEMEKHYRYTCPVCSKSLWDMSKLWSKIDQEIASTPMPAMYQNKMVWILCNDCGAN 96
L + E+ K Y+ P+ + SLW S ++DQ + S +P + N W++ ++ GA+
Sbjct: 332 LNTIPEVHKKYKEDEPLFTSSLWGPS--CDELDQIVESCLLPEL--NVGDWLIFDNMGAD 387
Query: 97 S 97
S
Sbjct: 388 S 388
>sp|O14977|AZIN1_HUMAN Antizyme inhibitor 1 OS=Homo sapiens GN=AZIN1 PE=1 SV=2
Length = 448
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 7/66 (10%)
Query: 37 LECLKEMEKHYRYTCPVCSKSLWDMSKLWSKIDQEIASTPMPAMYQNKMVWILCNDCGAN 96
L + E+ K Y+ P+ + SLW S ++DQ + S +P + N W++ ++ GA+
Sbjct: 332 LNTIPEVHKKYKEDEPLFTSSLWGPS--CDELDQIVESCLLPEL--NVGDWLIFDNMGAD 387
Query: 97 SHVQFH 102
S FH
Sbjct: 388 S---FH 390
>sp|Q5R7K3|AZIN1_PONAB Antizyme inhibitor 1 OS=Pongo abelii GN=AZIN1 PE=2 SV=1
Length = 448
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 7/66 (10%)
Query: 37 LECLKEMEKHYRYTCPVCSKSLWDMSKLWSKIDQEIASTPMPAMYQNKMVWILCNDCGAN 96
L + E+ K Y+ P+ + SLW S ++DQ + S +P + N W++ ++ GA+
Sbjct: 332 LNTIPEVHKKYKEDEPLFTSSLWGPS--CDELDQIVESCLLPEL--NVGDWLIFDNMGAD 387
Query: 97 SHVQFH 102
S FH
Sbjct: 388 S---FH 390
>sp|Q8W4Q5|RIN3_ARATH E3 ubiquitin protein ligase RIN3 OS=Arabidopsis thaliana GN=RIN3
PE=1 SV=2
Length = 577
Score = 30.0 bits (66), Expect = 4.1, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Query: 29 LRCGHTIHLECLK---EMEKHYRYTCPVCSKSLW 59
L C H HL CL+ + + Y+CP C K L+
Sbjct: 350 LHCNHLFHLGCLRSWLDQGLNEVYSCPTCRKPLF 383
>sp|E7EZF3|UHRF1_DANRE E3 ubiquitin-protein ligase UHRF1 OS=Danio rerio GN=uhrf1 PE=1 SV=1
Length = 776
Score = 30.0 bits (66), Expect = 4.2, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 31 CGHTIHLECLKEMEKHYRYTCPVCSKSL 58
C H + ECL+ K YTCP C L
Sbjct: 721 CQHNVCRECLQRSFKAKVYTCPACRHDL 748
>sp|Q6PCD5|RFWD3_HUMAN E3 ubiquitin-protein ligase RFWD3 OS=Homo sapiens GN=RFWD3 PE=1
SV=3
Length = 774
Score = 30.0 bits (66), Expect = 4.2, Method: Composition-based stats.
Identities = 29/124 (23%), Positives = 48/124 (38%), Gaps = 21/124 (16%)
Query: 26 ITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLW--DMSKLWSK----IDQEIASTPMPA 79
++ LRCGH C+ K CP C+K D+ L+++ +D +
Sbjct: 302 LSALRCGHLFGYRCISTWLKGQVRKCPQCNKKARHSDIVVLYARTLRALDTSEQERMKSS 361
Query: 80 MYQNKMVWILCNDCGANSHVQFHVIAHKC-------------LSCKSYNTRQTRGDTA-- 124
+ + +M+ A +Q V+ KC S +S N +Q RG A
Sbjct: 362 LLKEQMLRKQAELESAQCRLQLQVLTDKCTRLQRRVQDLQKLTSHQSQNLQQPRGSQAWV 421
Query: 125 TTCS 128
+CS
Sbjct: 422 LSCS 425
>sp|Q91XF4|RN167_MOUSE E3 ubiquitin-protein ligase RNF167 OS=Mus musculus GN=Rnf167 PE=2
SV=1
Length = 347
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 20 FDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSL 58
++ + VL C H H C+ R TCP+C + +
Sbjct: 237 YEDGDKLRVLPCAHAYHSRCVDPWLTQTRKTCPICKQPV 275
>sp|Q8R0K2|TRI31_MOUSE E3 ubiquitin-protein ligase TRIM31 OS=Mus musculus GN=Trim31 PE=1
SV=1
Length = 507
Score = 29.6 bits (65), Expect = 5.5, Method: Composition-based stats.
Identities = 15/59 (25%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Query: 21 DTMKDITVLRCGHTIHLECLKEMEK-HYRYTCPVC----SKSLWDMSKLWSKIDQEIAS 74
+ ++D + CGH L+C+ ++ K + CP+C +K+ + +KL + + ++I S
Sbjct: 21 EILQDPVTIDCGHNFCLQCISQVGKTSEKIQCPLCKLSVNKNTFRPNKLLASLAEKIQS 79
>sp|D2HWM5|RFWD3_AILME E3 ubiquitin-protein ligase RFWD3 OS=Ailuropoda melanoleuca
GN=RFWD3 PE=3 SV=1
Length = 773
Score = 29.6 bits (65), Expect = 6.1, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 26 ITVLRCGHTIHLECLKEMEKHYRYTCPVCSK 56
++ LRCGH +C+ + K CP C+K
Sbjct: 302 LSALRCGHLFGYKCISKWLKGQARKCPQCNK 332
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.133 0.442
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,904,893
Number of Sequences: 539616
Number of extensions: 1874480
Number of successful extensions: 6803
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 115
Number of HSP's that attempted gapping in prelim test: 6744
Number of HSP's gapped (non-prelim): 167
length of query: 136
length of database: 191,569,459
effective HSP length: 101
effective length of query: 35
effective length of database: 137,068,243
effective search space: 4797388505
effective search space used: 4797388505
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)