BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032683
(136 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1P6T|A Chain A, Structure Characterization Of The Water Soluble Region Of
P- Type Atpase Copa From Bacillus Subtilis
Length = 151
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 68 KMVVLRVS-MHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGD 112
K + ++VS M C CA ++EK + ++ GVT V+LA++ V VI D
Sbjct: 6 KEIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYD 51
Score = 33.9 bits (76), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Query: 76 MHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGDIIPFEVLESVSKVKNA 128
M C CA ++EK ++K+EGV + V+ A + V V + P E SVS +K A
Sbjct: 83 MTCAACANRIEKRLNKIEGVANAPVNFALETVTV--EYNPKEA--SVSDLKEA 131
>pdb|1OPZ|A Chain A, A Core Mutation Affecting The Folding Properties Of A
Soluble Domain Of The Atpase Protein Copa From Bacillus
Subtilis
pdb|1OQ3|A Chain A, A Core Mutation Affecting The Folding Properties Of A
Soluble Domain Of The Atpase Protein Copa From Bacillus
Subtilis
pdb|1OQ6|A Chain A, Solution Structure Of Copper-s46v Copa From Bacillus
Subtilis
Length = 76
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 68 KMVVLRVS-MHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGD 112
K + ++VS M C CA ++EK + ++ GVT V+LA++ V VI D
Sbjct: 6 KEIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYD 51
>pdb|2RML|A Chain A, Solution Structure Of The N-Terminal Soluble Domains Of
Bacillus Subtilis Copa
Length = 147
Score = 35.0 bits (79), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 68 KMVVLRVS-MHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGD 112
K + ++VS M C CA ++EK + ++ GVT V+LA++ VI D
Sbjct: 6 KEIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETSNVIYD 51
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Query: 76 MHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGDIIPFEVLESVSKVKNA 128
M C CA ++EK ++K+EGV + V+ A + V V + P E SVS +K A
Sbjct: 83 MTCAACANRIEKRLNKIEGVANAPVNFALETVTV--EYNPKEA--SVSDLKEA 131
>pdb|1MWY|A Chain A, Solution Structure Of The N-Terminal Domain Of Znta In The
Apo-Form
pdb|1MWZ|A Chain A, Solution Structure Of The N-Terminal Domain Of Znta In The
Zn(Ii)-Form
Length = 73
Score = 34.7 bits (78), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 22/37 (59%)
Query: 76 MHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGD 112
M C CARKVE V +L GV +V A++ +VV D
Sbjct: 12 MDCAACARKVENAVRQLAGVNQVQVLFATEKLVVDAD 48
>pdb|1KQK|A Chain A, Solution Structure Of The N-Terminal Domain Of A Potential
Copper-Translocating P-Type Atpase From Bacillus
Subtilis In The Cu(I)loaded State
Length = 80
Score = 34.3 bits (77), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Query: 76 MHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGDIIPFEVLESVSKVKNA 128
M C CA ++EK ++K+EGV + V+ A + V V + P E SVS +K A
Sbjct: 12 MTCAACANRIEKRLNKIEGVANAPVNFALETVTV--EYNPKEA--SVSDLKEA 60
>pdb|2VOY|A Chain A, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
pdb|1JWW|A Chain A, Nmr Characterization Of The N-Terminal Domain Of A
Potential Copper-Translocating P-Type Atpase From
Bacillus Subtilis
Length = 80
Score = 33.9 bits (76), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Query: 76 MHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGDIIPFEVLESVSKVKNA 128
M C CA ++EK ++K+EGV + V+ A + V V + P E SVS +K A
Sbjct: 12 MTCAACANRIEKRLNKIEGVANAPVNFALETVTV--EYNPKEA--SVSDLKEA 60
>pdb|2AJ0|A Chain A, Solution Structure Of Apocada
pdb|2AJ1|A Chain A, Solution Structure Of Apocada
Length = 71
Score = 33.1 bits (74), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 70 VVLRVS-MHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGD 112
V RV + C CA K E++V ++EGVT V+ + + V G+
Sbjct: 5 TVYRVDGLSCTNCAAKFERNVKEIEGVTEAIVNFGASKITVTGE 48
>pdb|3J09|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J09|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 723
Score = 32.3 bits (72), Expect = 0.083, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 67 PKMVVLRVS-MHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGD--IIPFEVLESV 122
P +RV+ M C C + +E V LEGV +V+LA++ + D I FE ++ V
Sbjct: 1 PMERTVRVTGMTCAMCVKSIETAVGSLEGVEEVRVNLATETAFIRFDEKRIDFETIKRV 59
>pdb|1KVI|A Chain A, Solution Structure Of The Reduced Form Of The First Heavy
Metal Binding Motif Of The Menkes Protein
pdb|1KVJ|A Chain A, Solution Structure Of The Cu(I) Bound Form Of The First
Heavy Metal Binding Motif Of The Menkes Protein
Length = 79
Score = 32.0 bits (71), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Query: 65 LKPKMVVLRVS-----MHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGD 112
+ P M V V+ M CN C +E+ + K+ GV KV L K +I D
Sbjct: 1 MDPSMGVNSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYD 53
>pdb|2GCF|A Chain A, Solution Structure Of The N-Terminal Domain Of The
Coppper(I) Atpase Pacs In Its Apo Form
Length = 73
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 10/68 (14%)
Query: 59 QTLAFQLKPKMVVLRVSMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVI--GDIIPF 116
QT+ QL+ M C CA +E+ ++K+ GV S +V+ A + VV G+ P
Sbjct: 3 QTINLQLE--------GMRCAACASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQ 54
Query: 117 EVLESVSK 124
+ ++V +
Sbjct: 55 ILTDAVER 62
>pdb|4A48|A Chain A, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A48|B Chain B, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A4J|A Chain A, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
Length = 69
Score = 31.6 bits (70), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 10/68 (14%)
Query: 59 QTLAFQLKPKMVVLRVSMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVI--GDIIPF 116
QT+ QL+ M C CA +E+ ++K+ GV S +V+ A + VV G+ P
Sbjct: 2 QTINLQLE--------GMDCTSCASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQ 53
Query: 117 EVLESVSK 124
+ ++V +
Sbjct: 54 ILTDAVER 61
>pdb|2XMW|A Chain A, Pacs, N-Terminal Domain, From Synechocystis Pcc6803
Length = 71
Score = 31.6 bits (70), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 10/68 (14%)
Query: 59 QTLAFQLKPKMVVLRVSMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVI--GDIIPF 116
QT+ QL+ M C CA +E+ ++K+ GV S +V+ A + VV G+ P
Sbjct: 3 QTINLQLE--------GMRCAACASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQ 54
Query: 117 EVLESVSK 124
+ ++V +
Sbjct: 55 ILTDAVER 62
>pdb|3HP1|A Chain A, Crystal Structure Of Human Dck R104mD133A IN COMPLEX WITH
L-Dt And Adp
Length = 280
Score = 31.6 bits (70), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 51/115 (44%), Gaps = 11/115 (9%)
Query: 2 GNLSLGK-----ILDCLCISS---PGSCSCFCLNTFEGQDEFEKKPLMKSDGGQLLRLKD 53
GN++ GK IL LC P + +C N QDEFE+ + + +GG +L++
Sbjct: 48 GNIAAGKSTFVNILKQLCEDWEVVPEPVARWC-NVQSTQDEFEELTMSQKNGGNVLQMMY 106
Query: 54 VVSGNQTLAFQLKPKMVVLRVSM-HCNGCARKVEKHVSKLE-GVTSYKVDLASKM 106
+ FQ + ++R + NG + EK V E V S + AS +
Sbjct: 107 EKPERWSFTFQTYACLSMIRAQLASLNGKLKDAEKPVLFFERSVYSARYIFASNL 161
>pdb|2K1R|A Chain A, The Solution Nmr Structure Of The Complex Between Mnk1 And
Hah1 Mediated By Cu(I)
Length = 73
Score = 31.2 bits (69), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 76 MHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGD 112
M CN C +E+ + K+ GV KV L K +I D
Sbjct: 13 MTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYD 49
>pdb|3CJK|B Chain B, Crystal Structure Of The Adduct Hah1-Cd(Ii)-Mnk1
Length = 75
Score = 31.2 bits (69), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 76 MHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGD 112
M CN C +E+ + K+ GV KV L K +I D
Sbjct: 11 MTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYD 47
>pdb|1OSD|A Chain A, Crystal Structure Of Oxidized Merp From Ralstonia
Metallidurans Ch34
pdb|1OSD|B Chain B, Crystal Structure Of Oxidized Merp From Ralstonia
Metallidurans Ch34
Length = 72
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 76 MHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGD 112
M C+ C V+K +SK+EGV+ V ++ VV D
Sbjct: 12 MTCSACPITVKKAISKVEGVSKVDVTFETRQAVVTFD 48
>pdb|3CJK|A Chain A, Crystal Structure Of The Adduct Hah1-Cd(Ii)-Mnk1
Length = 68
Score = 30.4 bits (67), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 74 VSMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVV 109
V M C GCA V + ++KL GV Y +DL +K V +
Sbjct: 7 VDMTCGGCAEAVSRVLNKLGGV-KYDIDLPNKKVCI 41
>pdb|3IPX|A Chain A, X-Ray Structure Of Human Deoxycytidine Kinase In Complex
With Adp And An Inhibitor
pdb|3IPY|A Chain A, X-Ray Structure Of Human Deoxycytidine Kinase In Complex
With An Inhibitor
pdb|3IPY|B Chain B, X-Ray Structure Of Human Deoxycytidine Kinase In Complex
With An Inhibitor
Length = 241
Score = 30.0 bits (66), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 50/115 (43%), Gaps = 11/115 (9%)
Query: 2 GNLSLGK-----ILDCLCISS---PGSCSCFCLNTFEGQDEFEKKPLMKSDGGQLLRLKD 53
GN++ GK IL LC P + +C N QDEFE+ + + +GG +L++
Sbjct: 9 GNIAAGKSTFVNILKQLCEDWEVVPEPVARWC-NVQSTQDEFEELTMSQKNGGNVLQMMY 67
Query: 54 VVSGNQTLAFQLKPKMVVLRVSM-HCNGCARKVEKHVSKLE-GVTSYKVDLASKM 106
+ FQ + +R + NG + EK V E V S + AS +
Sbjct: 68 EKPERWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASNL 122
>pdb|1FE4|A Chain A, Crystal Structure Of Mercury-Hah1
pdb|1FE4|B Chain B, Crystal Structure Of Mercury-Hah1
pdb|1FEE|A Chain A, Crystal Structure Of Copper-Hah1
pdb|1FEE|B Chain B, Crystal Structure Of Copper-Hah1
pdb|1FE0|A Chain A, Crystal Structure Of Cadmium-Hah1
pdb|1FE0|B Chain B, Crystal Structure Of Cadmium-Hah1
pdb|1TL4|A Chain A, Solution Structure Of Cu(i) Hah1
pdb|1TL5|A Chain A, Solution Structure Of Apohah1
pdb|2K1R|B Chain B, The Solution Nmr Structure Of The Complex Between Mnk1 And
Hah1 Mediated By Cu(I)
pdb|3IWL|A Chain A, Crystal Structure Of Cisplatin Bound To A Human Copper
Chaperone (Monomer)
pdb|3IWX|A Chain A, Crystal Structure Of Cisplatin Bound To A Human Copper
Chaperone (Dimer)
pdb|3IWX|B Chain B, Crystal Structure Of Cisplatin Bound To A Human Copper
Chaperone (Dimer)
Length = 68
Score = 30.0 bits (66), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 74 VSMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVV 109
V M C GCA V + ++KL GV Y +DL +K V +
Sbjct: 8 VDMTCGGCAEAVSRVLNKLGGV-KYDIDLPNKKVCI 42
>pdb|1P5Z|B Chain B, Structure Of Human Dck Complexed With Cytarabine And
Adp-Mg
pdb|1P60|A Chain A, Structure Of Human Dck Complexed With 2'-Deoxycytidine And
Adp, Space Group C 2 2 21
pdb|1P60|B Chain B, Structure Of Human Dck Complexed With 2'-Deoxycytidine And
Adp, Space Group C 2 2 21
pdb|1P61|B Chain B, Structure Of Human Dck Complexed With 2'-Deoxycytidine And
Adp, P 43 21 2 Space Group
pdb|1P62|B Chain B, Structure Of Human Dck Complexed With Gemcitabine And
Adp-Mg
pdb|2A7Q|A Chain A, Crystal Structure Of Human Dck Complexed With Clofarabine
And Adp
Length = 263
Score = 30.0 bits (66), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 50/115 (43%), Gaps = 11/115 (9%)
Query: 2 GNLSLGK-----ILDCLCISS---PGSCSCFCLNTFEGQDEFEKKPLMKSDGGQLLRLKD 53
GN++ GK IL LC P + +C N QDEFE+ + + +GG +L++
Sbjct: 31 GNIAAGKSTFVNILKQLCEDWEVVPEPVARWC-NVQSTQDEFEELTMSQKNGGNVLQMMY 89
Query: 54 VVSGNQTLAFQLKPKMVVLRVSM-HCNGCARKVEKHVSKLE-GVTSYKVDLASKM 106
+ FQ + +R + NG + EK V E V S + AS +
Sbjct: 90 EKPERWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASNL 144
>pdb|2QRN|A Chain A, Human Deoxycytidine Kinase Dcmp, Udp, Mg Ion Product
Complex
pdb|2QRN|B Chain B, Human Deoxycytidine Kinase Dcmp, Udp, Mg Ion Product
Complex
pdb|2QRN|C Chain C, Human Deoxycytidine Kinase Dcmp, Udp, Mg Ion Product
Complex
pdb|2QRN|D Chain D, Human Deoxycytidine Kinase Dcmp, Udp, Mg Ion Product
Complex
pdb|2QRO|A Chain A, Human Deoxycytidine Kinase Damp, Udp, Mg Ion Product
Complex
pdb|2QRO|B Chain B, Human Deoxycytidine Kinase Damp, Udp, Mg Ion Product
Complex
pdb|2QRO|C Chain C, Human Deoxycytidine Kinase Damp, Udp, Mg Ion Product
Complex
pdb|2QRO|D Chain D, Human Deoxycytidine Kinase Damp, Udp, Mg Ion Product
Complex
Length = 280
Score = 30.0 bits (66), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 50/115 (43%), Gaps = 11/115 (9%)
Query: 2 GNLSLGK-----ILDCLCISS---PGSCSCFCLNTFEGQDEFEKKPLMKSDGGQLLRLKD 53
GN++ GK IL LC P + +C N QDEFE+ + + +GG +L++
Sbjct: 48 GNIAAGKSTFVNILKQLCEDWEVVPEPVARWC-NVQSTQDEFEELTMSQKNGGNVLQMMY 106
Query: 54 VVSGNQTLAFQLKPKMVVLRVSM-HCNGCARKVEKHVSKLE-GVTSYKVDLASKM 106
+ FQ + +R + NG + EK V E V S + AS +
Sbjct: 107 EKPERWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASNL 161
>pdb|3HP7|A Chain A, Putative Hemolysin From Streptococcus Thermophilus
Length = 291
Score = 29.6 bits (65), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 52 KDVVSGNQTLAFQLKPKMVVLRVSMHCNGCARKVEKHVSKLEGVTSYKVDLA 103
K +V G Q +A +KP+ R + NG R+ H LE VT++ VD
Sbjct: 173 KILVDGGQVVAL-VKPQFEAGREQIGKNGIVRESSIHEKVLETVTAFAVDYG 223
>pdb|1AW0|A Chain A, Fourth Metal-Binding Domain Of The Menkes Copper-
Transporting Atpase, Nmr, 20 Structures
pdb|2AW0|A Chain A, Fourth Metal-Binding Domain Of The Menkes Copper-
Transporting Atpase, Nmr, 20 Structures
Length = 72
Score = 29.3 bits (64), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 76 MHCNGCARKVEKHVSKLEGVTSYKVDLAS 104
M CN C + +E +SK GV S +V LA+
Sbjct: 12 MTCNSCVQSIEGVISKKPGVKSIRVSLAN 40
>pdb|2LDI|A Chain A, Nmr Solution Structure Of Ziaan Sub Mutant
Length = 71
Score = 29.3 bits (64), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 76 MHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGDIIPFEVLE 120
M C CA +E+ + +L+GV V +A+ + V D P +V E
Sbjct: 12 MRCAACASSIERALERLKGVAEASVTVATGRLTVTYD--PKQVSE 54
>pdb|2ROP|A Chain A, Solution Structure Of Domains 3 And 4 Of Human Atp7b
Length = 202
Score = 28.9 bits (63), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 76 MHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGD---IIPFEVLESVSKVK-NAELW 131
M C C +E +S+LEGV V LA V+ + I P E+ ++ + A +
Sbjct: 131 MTCASCVHSIEGMISQLEGVQQISVSLAEGTATVLYNPAVISPEELRAAIEDMGFEASVV 190
Query: 132 SASC 135
S SC
Sbjct: 191 SESC 194
>pdb|4A47|A Chain A, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A47|B Chain B, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A47|C Chain C, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A47|D Chain D, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
Length = 63
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 75 SMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVV 109
+M C CA V K V + + +VDL SK V +
Sbjct: 8 TMDCTSCAEAVTKAVQNEDAQATVQVDLTSKKVTI 42
>pdb|1YG0|A Chain A, Solution Structure Of Apo-Copp From Helicobacter Pylori
Length = 66
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 75 SMHCNGCARKVEKHVSKLEGVT 96
S+ CN C K+EK V ++EGV+
Sbjct: 9 SITCNHCVDKIEKFVGEIEGVS 30
>pdb|1CC7|A Chain A, Crystal Structure Of The Atx1 Metallochaperone Protein
pdb|1CC8|A Chain A, Crystal Structure Of The Atx1 Metallochaperone Protein
pdb|2GGP|A Chain A, Solution Structure Of The Atx1-Cu(I)-Ccc2a Complex
pdb|1FES|A Chain A, Solution Structure Of The Apo Form Of The Yeast
Metallochaperone, Atx1
pdb|3K7R|A Chain A, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|B Chain B, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|C Chain C, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|D Chain D, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|E Chain E, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|F Chain F, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|G Chain G, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|H Chain H, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|I Chain I, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|J Chain J, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|K Chain K, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|L Chain L, Crystal Structure Of [tm][cuatx1]3
Length = 73
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 72 LRVSMHCNGCARKVEKHVSKLEGVTSYKVDLA-SKMVVVIGDIIPFE-VLESVSK 124
V M C+GC+ V K ++KLE S K+D++ K +V + +P++ +LE + K
Sbjct: 9 FNVVMTCSGCSGAVNKVLTKLEPDVS-KIDISLEKQLVDVYTTLPYDFILEKIKK 62
>pdb|1FD8|A Chain A, Solution Structure Of The Cu(I) Form Of The Yeast
Metallochaperone, Atx1
Length = 73
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 72 LRVSMHCNGCARKVEKHVSKLEGVTSYKVDLA-SKMVVVIGDIIPFE-VLESVSK 124
V M C+GC+ V K ++KLE S K+D++ K +V + +P++ +LE + K
Sbjct: 9 FNVVMTCSGCSGAVNKVLTKLEPDVS-KIDISLEKQLVDVYTTLPYDFILEKIKK 62
>pdb|2KKH|A Chain A, Structure Of The Zinc Binding Domain Of The Atpase Hma4
Length = 95
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 78 CNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGD---IIPFEVLESVSKVK 126
C +E + L+GV Y V + S+ V+V+ D I PF++ +++++ +
Sbjct: 27 CTSEVPIIENILKSLDGVKEYSVIVPSRTVIVVHDSLLISPFQIAKALNEAR 78
>pdb|2XMV|A Chain A, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
Trimeric Form, His61tyr Mutant)
pdb|2XMV|B Chain B, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
Trimeric Form, His61tyr Mutant)
pdb|2XMV|C Chain C, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
Trimeric Form, His61tyr Mutant)
pdb|2XMV|D Chain D, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
Trimeric Form, His61tyr Mutant)
pdb|2XMV|E Chain E, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
Trimeric Form, His61tyr Mutant)
pdb|2XMV|F Chain F, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
Trimeric Form, His61tyr Mutant)
pdb|2XMM|A Chain A, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites: H61y Atx1 Side-To-Side
pdb|2XMM|B Chain B, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites: H61y Atx1 Side-To-Side
Length = 64
Score = 27.3 bits (59), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 75 SMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVV 109
++ C CA V K V + + +VDL SK V +
Sbjct: 9 TIACEACAEAVTKAVQNEDAQATVQVDLTSKKVTI 43
>pdb|1Q8L|A Chain A, Second Metal Binding Domain Of The Menkes Atpase
Length = 84
Score = 27.3 bits (59), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 70 VVLRV---SMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVI 110
VVL++ M C+ C +E + KL+GV KV L ++ ++
Sbjct: 9 VVLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATIV 52
>pdb|1S6O|A Chain A, Solution Structure And Backbone Dynamics Of The Apo-Form
Of The Second Metal-Binding Domain Of The Menkes Protein
Atp7a
pdb|1S6U|A Chain A, Solution Structure And Backbone Dynamics Of The Cu(I) Form
Of The Second Metal-Binding Domain Of The Menkes Protein
Atp7a
Length = 76
Score = 26.9 bits (58), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 70 VVLRV---SMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVI 110
VVL++ M C+ C +E + KL+GV KV L ++ ++
Sbjct: 3 VVLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATIV 46
>pdb|4A46|A Chain A, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A46|B Chain B, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A46|C Chain C, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A46|D Chain D, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
Length = 63
Score = 26.9 bits (58), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 75 SMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVV 109
++ C CA V K V + + +VDL SK V +
Sbjct: 8 TIACEACAEAVTKAVQNEDAQATVQVDLTSKKVTI 42
>pdb|1SB6|A Chain A, Solution Structure Of A Cyanobacterial Copper
Metallochaperone, Scatx1
pdb|2XMT|A Chain A, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1
Form)
pdb|2XMT|B Chain B, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1
Form)
pdb|2XMU|A Chain A, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu2
Form)
pdb|2XMU|B Chain B, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu2
Form)
pdb|2XMJ|A Chain A, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites:atx1 Side-To-Side (Aerobic)
pdb|2XMJ|B Chain B, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites:atx1 Side-To-Side (Aerobic)
pdb|2XMK|A Chain A, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites: Atx1 Side-To-Side (Anaerobic)
pdb|2XMK|B Chain B, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites: Atx1 Side-To-Side (Anaerobic)
Length = 64
Score = 26.9 bits (58), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 75 SMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVV 109
++ C CA V K V + + +VDL SK V +
Sbjct: 9 TIACEACAEAVTKAVQNEDAQATVQVDLTSKKVTI 43
>pdb|1AFI|A Chain A, Structure Of The Reduced Form Of Merp, The Periplasmic
Protein From The Bacterial Mercury Detoxification
System, Nmr, 20 Structures
pdb|1AFJ|A Chain A, Structure Of The Mercury-Bound Form Of Merp, The
Periplasmic Protein From The Bacterial Mercury
Detoxification System, Nmr, 20 Structures
pdb|2HQI|A Chain A, Nmr Solution Structure Of The Oxidized Form Of Merp, 14
Structures
Length = 72
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 76 MHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGD 112
M C C V+K +SK+EGV+ V + VV D
Sbjct: 12 MTCAACPITVKKALSKVEGVSKVDVGFEKREAVVTFD 48
>pdb|3QEO|A Chain A, S74e-R104m-D133a Dck Variant In Complex With
L-Deoxythymidine And Udp
pdb|3QEO|B Chain B, S74e-R104m-D133a Dck Variant In Complex With
L-Deoxythymidine And Udp
Length = 279
Score = 26.6 bits (57), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 32 QDEFEKKPLMKSDGGQLLRLKDVVSGNQTLAFQLKPKMVVLRVSM-HCNGCARKVEKHVS 90
QDEFE+ + + +GG +L++ + FQ + ++R + NG + EK V
Sbjct: 84 QDEFEELTMEQKNGGNVLQMMYEKPERWSFTFQTYACLSMIRAQLASLNGKLKDAEKPVL 143
Query: 91 KLE-GVTSYKVDLASKM 106
E V S + AS +
Sbjct: 144 FFERSVYSARYIFASNL 160
>pdb|1P8G|A Chain A, The Solution Structure Of Apo Copz From Bacillus Subtilis
pdb|1K0V|A Chain A, Copper Trafficking: The Solution Structure Of Bacillus
Subtilis Copz
Length = 73
Score = 26.2 bits (56), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 76 MHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVV 109
M C C + VE V +L+GV++ V+L + V V
Sbjct: 11 MSCQHCVKAVETSVGELDGVSAVHVNLEAGKVDV 44
>pdb|2QIF|A Chain A, Crystal Structure Of A Metallochaperone With A
Tetranuclear Cu(I) Cluster
pdb|2QIF|B Chain B, Crystal Structure Of A Metallochaperone With A
Tetranuclear Cu(I) Cluster
pdb|3I9Z|A Chain A, Crystal Structure Of A Metallochaperone With A Trinuclear
Cu(I) Cluster
Length = 69
Score = 26.2 bits (56), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 76 MHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVV 109
M C C + VE V +L+GV++ V+L + V V
Sbjct: 11 MSCQHCVKAVETSVGELDGVSAVHVNLEAGKVDV 44
>pdb|2ROE|A Chain A, Solution Structure Of Thermus Thermophilus Hb8 Ttha1718
Protein In Vitro
pdb|2ROG|A Chain A, Solution Structure Of Thermus Thermophilus Hb8 Ttha1718
Protein In Living E. Coli Cells
Length = 66
Score = 26.2 bits (56), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 69 MVVLRVS-MHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGDIIPFEVLESVSK 124
M+ L+V M CN C V K + K+ GV +V L +V G P ++++V +
Sbjct: 1 MLKLKVEGMTCNHCVMAVTKALKKVPGVEKVEVSLEKGEALVEGTADPKALVQAVEE 57
>pdb|4DKJ|A Chain A, Cpg Specific Methyltransferase In Complex With Target Dna
Length = 403
Score = 25.8 bits (55), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 11/42 (26%), Positives = 25/42 (59%)
Query: 81 CARKVEKHVSKLEGVTSYKVDLASKMVVVIGDIIPFEVLESV 122
C + ++ V+ + V S + +KM+ + G+ IP ++LE++
Sbjct: 343 CFKYMQFDVNDFKKVQSTNLISENKMIYIAGNSIPVKILEAI 384
>pdb|3ZLI|A Chain A, Crystal Structure Of Jmjc Domain Of Human Histone
Demethylase Uty
pdb|3ZLI|B Chain B, Crystal Structure Of Jmjc Domain Of Human Histone
Demethylase Uty
Length = 478
Score = 25.8 bits (55), Expect = 7.9, Method: Composition-based stats.
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 76 MHCNGCARKVEKHVSKLEGVTSYKVD 101
+HC+ CARK K + + YK++
Sbjct: 427 VHCHDCARKTSKSLENFVVLEQYKME 452
>pdb|3L0G|A Chain A, Crystal Structure Of Nicotinate-Nucleotide
Pyrophosphorylase From Ehrlichia Chaffeensis At 2.05a
Resolution
pdb|3L0G|B Chain B, Crystal Structure Of Nicotinate-Nucleotide
Pyrophosphorylase From Ehrlichia Chaffeensis At 2.05a
Resolution
pdb|3L0G|C Chain C, Crystal Structure Of Nicotinate-Nucleotide
Pyrophosphorylase From Ehrlichia Chaffeensis At 2.05a
Resolution
pdb|3L0G|D Chain D, Crystal Structure Of Nicotinate-Nucleotide
Pyrophosphorylase From Ehrlichia Chaffeensis At 2.05a
Resolution
Length = 300
Score = 25.4 bits (54), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Query: 29 FEGQDEFEKKPLMKSDGGQLLRLKDVVSGNQTLAFQLKP-KMVVLRVSMHCNGCARKVEK 87
F E K + K DG + +VSG + LA L P + V+L H +G A +
Sbjct: 77 FNMNKEHVKYEIHKKDGDITGKNSTLVSG-EALAIYLLPIERVILNFIQHASGIASITRQ 135
Query: 88 HVSKLEG 94
V ++ G
Sbjct: 136 FVDEVSG 142
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,714,154
Number of Sequences: 62578
Number of extensions: 125389
Number of successful extensions: 372
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 330
Number of HSP's gapped (non-prelim): 49
length of query: 136
length of database: 14,973,337
effective HSP length: 88
effective length of query: 48
effective length of database: 9,466,473
effective search space: 454390704
effective search space used: 454390704
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)