BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032685
(136 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1AON|O Chain O, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|P Chain P, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|Q Chain Q, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|R Chain R, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|S Chain S, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|T Chain T, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|U Chain U, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1GRU|O Chain O, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|P Chain P, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|Q Chain Q, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|R Chain R, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|S Chain S, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|T Chain T, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|U Chain U, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1PCQ|O Chain O, Crystal Structure Of Groel-Groes
pdb|1PCQ|P Chain P, Crystal Structure Of Groel-Groes
pdb|1PCQ|Q Chain Q, Crystal Structure Of Groel-Groes
pdb|1PCQ|R Chain R, Crystal Structure Of Groel-Groes
pdb|1PCQ|S Chain S, Crystal Structure Of Groel-Groes
pdb|1PCQ|T Chain T, Crystal Structure Of Groel-Groes
pdb|1PCQ|U Chain U, Crystal Structure Of Groel-Groes
pdb|1PF9|O Chain O, Groel-Groes-Adp
pdb|1PF9|P Chain P, Groel-Groes-Adp
pdb|1PF9|Q Chain Q, Groel-Groes-Adp
pdb|1PF9|R Chain R, Groel-Groes-Adp
pdb|1PF9|S Chain S, Groel-Groes-Adp
pdb|1PF9|T Chain T, Groel-Groes-Adp
pdb|1PF9|U Chain U, Groel-Groes-Adp
pdb|1SVT|O Chain O, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|P Chain P, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|Q Chain Q, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|R Chain R, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|S Chain S, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|T Chain T, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|U Chain U, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SX4|O Chain O, Groel-Groes-Adp7
pdb|1SX4|P Chain P, Groel-Groes-Adp7
pdb|1SX4|Q Chain Q, Groel-Groes-Adp7
pdb|1SX4|R Chain R, Groel-Groes-Adp7
pdb|1SX4|S Chain S, Groel-Groes-Adp7
pdb|1SX4|T Chain T, Groel-Groes-Adp7
pdb|1SX4|U Chain U, Groel-Groes-Adp7
pdb|2C7C|O Chain O, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|P Chain P, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|Q Chain Q, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|R Chain R, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|S Chain S, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|T Chain T, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|U Chain U, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7D|O Chain O, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|P Chain P, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|Q Chain Q, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|R Chain R, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|S Chain S, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|T Chain T, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|U Chain U, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
Length = 97
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 52/95 (54%), Gaps = 13/95 (13%)
Query: 52 PQADRVLVRLEQLPEKSAGGILLP-KAAVKFERYLMGEILTVGA----DVGQ-----VNA 101
P DRV+V+ +++ KSAGGI+L AA K R GE+L VG + G+ V
Sbjct: 5 PLHDRVIVKRKEVETKSAGGIVLTGSAAAKSTR---GEVLAVGNGRILENGEVKPLDVKV 61
Query: 102 GKKVLFSDISAYEVDLGADERHCFVKESDLLAVVE 136
G V+F+D + + +E + ESD+LA+VE
Sbjct: 62 GDIVIFNDGYGVKSEKIDNEEVLIMSESDILAIVE 96
>pdb|1WE3|O Chain O, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|P Chain P, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|Q Chain Q, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|R Chain R, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|S Chain S, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|T Chain T, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|U Chain U, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|OO Chain o, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|PP Chain p, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|QQ Chain q, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|RR Chain r, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|SS Chain s, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|TT Chain t, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|UU Chain u, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
Length = 100
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 55/99 (55%), Gaps = 14/99 (14%)
Query: 48 TKVVPQADRVLV-RLEQLPEKSAGGILLPKAAVKFERYLMGEILTVGA----DVGQ---- 98
T + P DRV+V R+E+ P K+ GGI+LP A E+ G+++ VG + GQ
Sbjct: 6 TVIKPLGDRVVVKRIEEEP-KTKGGIVLPDTA--KEKPQKGKVIAVGTGRVLENGQRVPL 62
Query: 99 -VNAGKKVLFSDISAYEVDLGADERHCFVKESDLLAVVE 136
V G V+F+ E+++ +E + + E DLLAV++
Sbjct: 63 EVKEGDIVVFAKYGGTEIEIDGEE-YVILSERDLLAVLQ 100
>pdb|1WNR|A Chain A, Crystal Structure Of The Cpn10 From Thermus Thermophilus
Hb8
pdb|1WNR|B Chain B, Crystal Structure Of The Cpn10 From Thermus Thermophilus
Hb8
pdb|1WNR|C Chain C, Crystal Structure Of The Cpn10 From Thermus Thermophilus
Hb8
pdb|1WNR|D Chain D, Crystal Structure Of The Cpn10 From Thermus Thermophilus
Hb8
pdb|1WNR|E Chain E, Crystal Structure Of The Cpn10 From Thermus Thermophilus
Hb8
pdb|1WNR|F Chain F, Crystal Structure Of The Cpn10 From Thermus Thermophilus
Hb8
pdb|1WNR|G Chain G, Crystal Structure Of The Cpn10 From Thermus Thermophilus
Hb8
Length = 94
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 14/95 (14%)
Query: 52 PQADRVLV-RLEQLPEKSAGGILLPKAAVKFERYLMGEILTVGA----DVGQ-----VNA 101
P DRV+V R+E+ P K+ GGI+LP A E+ G+++ VG + GQ V
Sbjct: 4 PLGDRVVVKRIEEEP-KTKGGIVLPDTA--KEKPQKGKVIAVGTGRVLENGQRVPLEVKE 60
Query: 102 GKKVLFSDISAYEVDLGADERHCFVKESDLLAVVE 136
G V+F+ E+++ +E + + E DLLAV++
Sbjct: 61 GDIVVFAKYGGTEIEIDGEE-YVILSERDLLAVLQ 94
>pdb|3NX6|A Chain A, Crystal Structure Of Co-Chaperonin, Groes (Xoo4289) From
Xanthomonas Oryzae Pv. Oryzae Kacc10331
Length = 95
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 53/95 (55%), Gaps = 16/95 (16%)
Query: 52 PQADRVLVRLEQLPEKSAGGILLPKAAVKFERYLMGEILTVGA----DVGQVNA-----G 102
P DRV+V+ + E SAGGI++P +A E+ GE++ +GA D G ++A G
Sbjct: 5 PLHDRVVVKPIEADEVSAGGIVIPDSA--KEKSTKGEVVAIGAGKPLDNGSLHAPVVKVG 62
Query: 103 KKVLFSDI--SAYEVDLGADERHCFVKESDLLAVV 135
KV++ S+Y+ + + ++E D+LAV+
Sbjct: 63 DKVIYGQYAGSSYKSE---GVEYKVLREDDILAVI 94
>pdb|4FIU|A Chain A, The Structure Of Hemagglutinin Of H16 Subtype Influenza
Virus With V327g Mutation
pdb|4FIU|B Chain B, The Structure Of Hemagglutinin Of H16 Subtype Influenza
Virus With V327g Mutation
pdb|4FIU|C Chain C, The Structure Of Hemagglutinin Of H16 Subtype Influenza
Virus With V327g Mutation
Length = 515
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 62 EQLPEKSAGGILLPKAAVKFERYLMGEILTVGADVGQVN 100
E++ +S+GG+L P+ E+Y G I G + + N
Sbjct: 245 ERITFESSGGLLAPRYGYIIEKYGTGRIFQSGVRLAKCN 283
>pdb|4F23|A Chain A, Influenza A Virus Hemagglutinin H16 Ha0 Structure With An
Alpha-Helix Conformation In The Cleavage Site: A
Potential Drug Target
pdb|4F23|B Chain B, Influenza A Virus Hemagglutinin H16 Ha0 Structure With An
Alpha-Helix Conformation In The Cleavage Site: A
Potential Drug Target
pdb|4F23|C Chain C, Influenza A Virus Hemagglutinin H16 Ha0 Structure With An
Alpha-Helix Conformation In The Cleavage Site: A
Potential Drug Target
Length = 515
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 62 EQLPEKSAGGILLPKAAVKFERYLMGEILTVGADVGQVN 100
E++ +S+GG+L P+ E+Y G I G + + N
Sbjct: 245 ERITFESSGGLLAPRYGYIIEKYGTGRIFQSGVRLAKCN 283
>pdb|3K13|A Chain A, Structure Of The Pterin-Binding Domain Metr Of 5-
Methyltetrahydrofolate-Homocysteine Methyltransferase
From Bacteroides Thetaiotaomicron
pdb|3K13|B Chain B, Structure Of The Pterin-Binding Domain Metr Of 5-
Methyltetrahydrofolate-Homocysteine Methyltransferase
From Bacteroides Thetaiotaomicron
pdb|3K13|C Chain C, Structure Of The Pterin-Binding Domain Metr Of 5-
Methyltetrahydrofolate-Homocysteine Methyltransferase
From Bacteroides Thetaiotaomicron
Length = 300
Score = 26.2 bits (56), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 13/20 (65%)
Query: 93 GADVGQVNAGKKVLFSDISA 112
G D G VN G VL+SDI A
Sbjct: 247 GXDXGIVNPGTSVLYSDIPA 266
>pdb|3TQH|A Chain A, Structure Of The Quinone Oxidoreductase From Coxiella
Burnetii
Length = 321
Score = 25.4 bits (54), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 87 GEILTVGADVGQVNAGKKV 105
GE++ +G+DV VN G KV
Sbjct: 77 GEVIELGSDVNNVNIGDKV 95
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,766,811
Number of Sequences: 62578
Number of extensions: 138839
Number of successful extensions: 312
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 303
Number of HSP's gapped (non-prelim): 9
length of query: 136
length of database: 14,973,337
effective HSP length: 88
effective length of query: 48
effective length of database: 9,466,473
effective search space: 454390704
effective search space used: 454390704
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)