Query 032685
Match_columns 136
No_of_seqs 109 out of 1076
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 04:38:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032685.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032685hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0234 GroS Co-chaperonin Gro 100.0 6.1E-34 1.3E-38 204.9 9.2 86 48-136 1-95 (96)
2 PRK14533 groES co-chaperonin G 100.0 4.4E-33 9.5E-38 198.6 10.0 86 48-136 1-90 (91)
3 PTZ00414 10 kDa heat shock pro 100.0 4.6E-33 1E-37 201.8 10.0 86 48-136 10-99 (100)
4 PRK00364 groES co-chaperonin G 100.0 2.7E-32 5.9E-37 195.1 10.1 86 48-136 1-95 (95)
5 cd00320 cpn10 Chaperonin 10 Kd 100.0 4.4E-31 9.5E-36 188.1 9.7 84 49-135 1-93 (93)
6 PF00166 Cpn10: Chaperonin 10 100.0 3.5E-29 7.5E-34 177.5 9.5 84 49-135 1-93 (93)
7 KOG1641 Mitochondrial chaperon 99.9 3.2E-28 6.8E-33 176.9 6.4 93 41-135 2-103 (104)
8 PF08240 ADH_N: Alcohol dehydr 93.3 0.1 2.2E-06 36.4 3.2 25 85-109 39-63 (109)
9 KOG1197 Predicted quinone oxid 92.0 0.15 3.3E-06 43.8 3.1 41 66-109 52-96 (336)
10 TIGR03366 HpnZ_proposed putati 89.3 0.41 8.8E-06 38.3 3.3 25 85-109 6-36 (280)
11 COG1062 AdhC Zn-dependent alco 88.5 0.38 8.3E-06 42.2 2.7 55 52-107 25-85 (366)
12 COG0604 Qor NADPH:quinone redu 87.7 0.71 1.5E-05 38.9 3.9 55 52-109 25-89 (326)
13 KOG0025 Zn2+-binding dehydroge 84.6 1.7 3.7E-05 38.0 4.6 62 51-113 45-114 (354)
14 TIGR02819 fdhA_non_GSH formald 84.1 1.1 2.3E-05 38.4 3.2 24 85-108 69-92 (393)
15 KOG0022 Alcohol dehydrogenase, 83.4 2 4.4E-05 37.8 4.6 22 85-106 69-90 (375)
16 cd08230 glucose_DH Glucose deh 80.6 1.6 3.5E-05 35.9 2.9 23 85-108 65-87 (355)
17 TIGR01202 bchC 2-desacetyl-2-h 80.3 1.8 4E-05 35.2 3.2 23 85-108 66-88 (308)
18 COG1064 AdhP Zn-dependent alco 79.3 2 4.4E-05 37.3 3.2 25 84-108 64-88 (339)
19 PLN02586 probable cinnamyl alc 78.9 2.1 4.6E-05 35.7 3.1 23 85-107 74-96 (360)
20 PRK10309 galactitol-1-phosphat 78.1 2.4 5.2E-05 34.7 3.2 25 84-108 60-84 (347)
21 PLN02178 cinnamyl-alcohol dehy 76.4 2.7 5.9E-05 35.6 3.1 23 85-107 68-90 (375)
22 TIGR02822 adh_fam_2 zinc-bindi 76.2 2.8 6E-05 34.5 3.1 24 85-108 64-87 (329)
23 cd08281 liver_ADH_like1 Zinc-d 76.2 2.8 6.1E-05 34.9 3.1 23 85-107 69-91 (371)
24 KOG0024 Sorbitol dehydrogenase 75.5 1.3 2.7E-05 38.9 0.9 56 54-109 29-93 (354)
25 cd08301 alcohol_DH_plants Plan 75.2 3 6.5E-05 34.5 3.0 24 85-108 64-87 (369)
26 cd08293 PTGR2 Prostaglandin re 75.1 3.2 6.9E-05 33.6 3.1 25 84-108 75-99 (345)
27 cd08237 ribitol-5-phosphate_DH 74.6 6.8 0.00015 32.3 5.0 23 85-109 66-88 (341)
28 PRK10083 putative oxidoreducta 74.6 3.7 8E-05 33.1 3.4 24 85-108 61-84 (339)
29 cd08239 THR_DH_like L-threonin 73.7 3.6 7.9E-05 33.3 3.1 25 85-109 62-86 (339)
30 cd08238 sorbose_phosphate_red 73.5 3.4 7.4E-05 35.1 3.0 24 85-108 70-94 (410)
31 PLN02827 Alcohol dehydrogenase 73.0 3.4 7.4E-05 34.8 2.9 24 85-108 71-94 (378)
32 cd08269 Zn_ADH9 Alcohol dehydr 72.7 8.1 0.00018 30.3 4.8 27 85-111 59-85 (312)
33 TIGR03451 mycoS_dep_FDH mycoth 72.2 4 8.7E-05 33.7 3.1 23 85-107 62-84 (358)
34 TIGR02818 adh_III_F_hyde S-(hy 72.0 4.1 8.9E-05 34.0 3.1 24 85-108 63-86 (368)
35 PLN02740 Alcohol dehydrogenase 71.9 4.1 8.9E-05 34.2 3.1 24 85-108 73-96 (381)
36 cd08260 Zn_ADH6 Alcohol dehydr 71.7 5.3 0.00011 32.3 3.6 25 84-108 61-85 (345)
37 cd08233 butanediol_DH_like (2R 71.4 4.3 9.4E-05 33.1 3.1 23 85-107 72-94 (351)
38 cd08300 alcohol_DH_class_III c 71.1 4.3 9.4E-05 33.7 3.1 24 85-108 64-87 (368)
39 PLN02514 cinnamyl-alcohol dehy 70.9 4.4 9.5E-05 33.7 3.1 24 84-107 70-93 (357)
40 PF09871 DUF2098: Uncharacteri 70.6 9 0.0002 27.5 4.2 35 98-132 2-40 (91)
41 cd08292 ETR_like_2 2-enoyl thi 70.4 5.4 0.00012 31.6 3.4 26 84-109 65-90 (324)
42 cd08277 liver_alcohol_DH_like 69.8 4.8 0.0001 33.4 3.0 24 85-108 63-86 (365)
43 TIGR02817 adh_fam_1 zinc-bindi 69.7 5.2 0.00011 32.0 3.2 25 84-108 65-89 (336)
44 cd08287 FDH_like_ADH3 formalde 69.4 4.8 0.0001 32.5 2.9 23 85-107 61-83 (345)
45 TIGR00692 tdh L-threonine 3-de 69.2 5.4 0.00012 32.4 3.2 25 84-108 62-86 (340)
46 cd05188 MDR Medium chain reduc 69.1 5.8 0.00013 30.0 3.2 25 85-109 37-61 (271)
47 cd08278 benzyl_alcohol_DH Benz 68.1 5.3 0.00011 33.1 3.0 24 84-107 62-85 (365)
48 cd08264 Zn_ADH_like2 Alcohol d 68.0 5.7 0.00012 31.7 3.0 24 85-108 62-85 (325)
49 cd08261 Zn_ADH7 Alcohol dehydr 68.0 5.8 0.00013 32.0 3.1 24 84-107 60-83 (337)
50 cd08236 sugar_DH NAD(P)-depend 67.5 5.8 0.00012 32.0 3.0 25 84-108 59-83 (343)
51 cd05284 arabinose_DH_like D-ar 67.2 5.8 0.00013 31.9 3.0 24 85-108 65-88 (340)
52 cd05278 FDH_like Formaldehyde 67.1 6.1 0.00013 31.8 3.1 24 84-107 61-84 (347)
53 cd08232 idonate-5-DH L-idonate 66.9 6 0.00013 31.9 3.0 23 85-107 61-83 (339)
54 cd08283 FDH_like_1 Glutathione 65.6 6.6 0.00014 33.0 3.1 24 85-108 62-85 (386)
55 cd05279 Zn_ADH1 Liver alcohol 65.2 6.9 0.00015 32.5 3.1 24 85-108 61-84 (365)
56 cd05283 CAD1 Cinnamyl alcohol 65.0 7 0.00015 31.8 3.1 23 85-107 61-83 (337)
57 cd08291 ETR_like_1 2-enoyl thi 64.9 7.2 0.00016 31.4 3.1 25 84-108 67-92 (324)
58 COG1063 Tdh Threonine dehydrog 64.5 7 0.00015 33.0 3.0 24 85-109 63-86 (350)
59 cd08255 2-desacetyl-2-hydroxye 63.9 13 0.00028 28.9 4.3 25 84-108 27-51 (277)
60 PLN02702 L-idonate 5-dehydroge 63.7 7.5 0.00016 32.0 3.0 23 85-107 81-103 (364)
61 cd08284 FDH_like_2 Glutathione 63.7 7.1 0.00015 31.4 2.8 24 85-108 61-84 (344)
62 cd08235 iditol_2_DH_like L-idi 63.7 7.4 0.00016 31.3 3.0 25 84-108 60-84 (343)
63 cd08262 Zn_ADH8 Alcohol dehydr 63.5 7.5 0.00016 31.3 2.9 24 85-108 71-95 (341)
64 PRK05396 tdh L-threonine 3-deh 63.3 8.5 0.00018 31.2 3.3 24 85-108 65-88 (341)
65 cd08282 PFDH_like Pseudomonas 63.2 7.9 0.00017 32.2 3.1 23 85-107 61-83 (375)
66 cd08268 MDR2 Medium chain dehy 62.8 8.2 0.00018 30.0 3.0 25 84-108 64-88 (328)
67 cd08258 Zn_ADH4 Alcohol dehydr 62.8 8.4 0.00018 31.1 3.1 24 85-108 63-86 (306)
68 PTZ00354 alcohol dehydrogenase 62.7 8.8 0.00019 30.3 3.2 25 84-108 65-89 (334)
69 PF08140 Cuticle_1: Crustacean 62.4 10 0.00022 23.5 2.7 39 69-107 2-40 (40)
70 cd08285 NADP_ADH NADP(H)-depen 62.3 8.4 0.00018 31.4 3.1 25 84-108 60-84 (351)
71 COG4079 Uncharacterized protei 62.2 12 0.00026 31.9 4.0 30 96-127 259-292 (293)
72 PRK10754 quinone oxidoreductas 62.0 9.1 0.0002 30.6 3.2 24 85-108 65-88 (327)
73 cd08286 FDH_like_ADH2 formalde 61.9 8.7 0.00019 31.1 3.1 24 85-108 62-85 (345)
74 KOG0023 Alcohol dehydrogenase, 61.1 7.1 0.00015 34.4 2.5 25 85-109 73-97 (360)
75 PF10844 DUF2577: Protein of u 61.0 9.8 0.00021 27.1 2.9 23 98-127 76-98 (100)
76 cd05285 sorbitol_DH Sorbitol d 60.9 9.5 0.0002 31.0 3.1 24 84-107 61-84 (343)
77 cd08259 Zn_ADH5 Alcohol dehydr 60.9 9.4 0.0002 30.2 3.0 25 84-108 61-85 (332)
78 cd08279 Zn_ADH_class_III Class 60.8 8.6 0.00019 31.7 2.9 24 84-107 60-83 (363)
79 cd08274 MDR9 Medium chain dehy 60.8 9.7 0.00021 30.6 3.1 24 85-108 85-108 (350)
80 cd08231 MDR_TM0436_like Hypoth 60.4 9.4 0.0002 31.2 3.1 24 85-108 62-91 (361)
81 cd08290 ETR 2-enoyl thioester 59.7 9.6 0.00021 30.6 2.9 27 84-110 70-96 (341)
82 cd08246 crotonyl_coA_red croto 59.1 11 0.00023 31.6 3.2 24 85-108 89-112 (393)
83 cd08297 CAD3 Cinnamyl alcohol 58.3 26 0.00056 28.2 5.2 23 85-107 64-86 (341)
84 smart00829 PKS_ER Enoylreducta 58.2 11 0.00023 28.6 2.8 25 85-109 31-55 (288)
85 cd08254 hydroxyacyl_CoA_DH 6-h 58.2 12 0.00025 29.8 3.1 23 85-107 64-86 (338)
86 cd08240 6_hydroxyhexanoate_dh_ 58.1 11 0.00023 30.7 3.0 24 85-108 74-97 (350)
87 cd08245 CAD Cinnamyl alcohol d 57.8 12 0.00027 29.8 3.3 25 84-108 60-84 (330)
88 PRK09422 ethanol-active dehydr 57.5 11 0.00024 30.2 3.0 24 84-107 60-83 (338)
89 cd08266 Zn_ADH_like1 Alcohol d 57.3 11 0.00025 29.5 2.9 24 85-108 65-88 (342)
90 cd08234 threonine_DH_like L-th 57.1 13 0.00027 29.8 3.2 24 84-107 59-82 (334)
91 cd08270 MDR4 Medium chain dehy 56.8 13 0.00029 29.1 3.3 25 84-108 58-82 (305)
92 cd08265 Zn_ADH3 Alcohol dehydr 56.7 12 0.00025 31.4 3.0 23 85-107 95-117 (384)
93 cd05286 QOR2 Quinone oxidoredu 56.2 14 0.00029 28.5 3.1 26 84-109 61-86 (320)
94 cd08256 Zn_ADH2 Alcohol dehydr 56.1 12 0.00026 30.5 3.0 23 85-107 70-94 (350)
95 cd08253 zeta_crystallin Zeta-c 55.6 13 0.00028 28.8 2.9 25 85-109 65-89 (325)
96 cd05195 enoyl_red enoyl reduct 55.4 13 0.00029 27.9 2.9 26 84-109 34-59 (293)
97 TIGR01751 crot-CoA-red crotony 54.1 14 0.0003 31.1 3.2 24 85-108 85-108 (398)
98 cd08251 polyketide_synthase po 54.0 15 0.00032 28.3 3.1 25 84-108 44-68 (303)
99 cd08299 alcohol_DH_class_I_II_ 53.7 14 0.00031 30.9 3.1 24 85-108 68-91 (373)
100 cd08244 MDR_enoyl_red Possible 53.7 14 0.00031 29.1 3.0 26 84-109 66-91 (324)
101 cd08296 CAD_like Cinnamyl alco 53.4 15 0.00033 29.7 3.2 23 85-107 62-84 (333)
102 PF01455 HupF_HypC: HupF/HypC 53.4 19 0.00041 24.2 3.1 12 98-109 37-48 (68)
103 cd08247 AST1_like AST1 is a cy 53.4 13 0.00029 30.2 2.8 25 84-108 65-90 (352)
104 PLN03154 putative allyl alcoho 53.2 14 0.0003 30.7 2.9 24 84-107 81-104 (348)
105 TIGR03201 dearomat_had 6-hydro 53.1 15 0.00033 30.1 3.2 23 85-108 61-83 (349)
106 cd08298 CAD2 Cinnamyl alcohol 53.0 16 0.00034 29.2 3.1 23 85-107 66-88 (329)
107 cd08271 MDR5 Medium chain dehy 52.2 16 0.00034 28.6 3.0 25 84-108 63-87 (325)
108 cd05282 ETR_like 2-enoyl thioe 51.9 16 0.00035 28.8 3.0 26 84-109 63-88 (323)
109 cd08267 MDR1 Medium chain dehy 51.8 17 0.00037 28.3 3.1 25 84-108 65-89 (319)
110 cd06819 PLPDE_III_LS_D-TA Type 51.5 35 0.00077 28.4 5.1 37 97-135 315-352 (358)
111 cd08248 RTN4I1 Human Reticulon 51.5 14 0.00031 29.7 2.7 24 85-108 81-104 (350)
112 cd08272 MDR6 Medium chain dehy 51.2 17 0.00037 28.3 3.0 25 84-108 64-88 (326)
113 cd03703 aeIF5B_II aeIF5B_II: T 50.9 27 0.00058 25.8 3.8 17 96-112 24-40 (110)
114 cd08273 MDR8 Medium chain dehy 50.1 18 0.00038 28.7 3.0 25 85-109 65-89 (331)
115 cd08250 Mgc45594_like Mgc45594 49.3 20 0.00044 28.5 3.2 26 84-109 67-92 (329)
116 PRK13771 putative alcohol dehy 49.2 19 0.00042 28.8 3.1 25 85-109 62-86 (334)
117 PRK09880 L-idonate 5-dehydroge 48.3 18 0.0004 29.6 2.9 22 85-108 67-88 (343)
118 cd05276 p53_inducible_oxidored 48.0 20 0.00042 27.6 2.9 24 85-108 65-88 (323)
119 cd08263 Zn_ADH10 Alcohol dehyd 47.5 20 0.00042 29.6 3.0 24 84-107 60-86 (367)
120 cd08252 AL_MDR Arginate lyase 47.3 20 0.00043 28.6 2.9 24 85-108 67-90 (336)
121 TIGR02824 quinone_pig3 putativ 46.8 22 0.00047 27.6 3.0 25 84-108 64-88 (325)
122 cd08249 enoyl_reductase_like e 46.5 21 0.00045 29.1 3.0 25 84-108 61-85 (339)
123 cd05281 TDH Threonine dehydrog 45.5 25 0.00054 28.5 3.2 24 84-107 64-87 (341)
124 COG0511 AccB Biotin carboxyl c 45.2 81 0.0018 23.6 5.8 51 83-136 75-139 (140)
125 cd08275 MDR3 Medium chain dehy 44.1 25 0.00055 27.6 3.0 24 85-108 64-87 (337)
126 PF06890 Phage_Mu_Gp45: Bacter 42.5 1.4E+02 0.003 23.3 6.9 38 70-111 47-87 (162)
127 cd06820 PLPDE_III_LS_D-TA_like 42.2 53 0.0012 27.3 4.8 37 97-135 310-347 (353)
128 PF02559 CarD_CdnL_TRCF: CarD- 41.1 24 0.00052 24.3 2.2 14 99-112 2-15 (98)
129 cd05288 PGDH Prostaglandin deh 40.9 24 0.00051 28.0 2.4 22 85-108 72-93 (329)
130 PRK12278 50S ribosomal protein 40.8 60 0.0013 26.7 4.8 30 89-118 4-36 (221)
131 cd05289 MDR_like_2 alcohol deh 40.2 31 0.00066 26.5 2.9 25 85-109 67-91 (309)
132 cd08241 QOR1 Quinone oxidoredu 40.1 32 0.0007 26.5 3.0 26 84-109 64-89 (323)
133 cd08276 MDR7 Medium chain dehy 39.3 33 0.00072 27.0 3.0 25 84-108 64-88 (336)
134 TIGR00061 L21 ribosomal protei 38.9 75 0.0016 23.0 4.6 30 89-118 3-35 (101)
135 PF00829 Ribosomal_L21p: Ribos 38.7 42 0.00091 23.8 3.2 30 89-118 4-36 (96)
136 cd08243 quinone_oxidoreductase 37.6 33 0.00072 26.7 2.8 22 85-108 64-85 (320)
137 PRK09838 periplasmic copper-bi 37.3 98 0.0021 22.8 5.0 11 98-108 88-98 (115)
138 TIGR00523 eIF-1A eukaryotic/ar 36.8 51 0.0011 23.8 3.4 15 99-113 58-72 (99)
139 cd08242 MDR_like Medium chain 36.7 34 0.00074 27.2 2.7 20 85-107 58-77 (319)
140 CHL00075 rpl21 ribosomal prote 36.0 69 0.0015 23.5 4.0 30 89-118 6-38 (108)
141 PRK05573 rplU 50S ribosomal pr 35.3 99 0.0022 22.3 4.7 30 89-118 4-36 (103)
142 COG4384 Mu-like prophage prote 34.4 1.8E+02 0.0039 23.8 6.5 42 85-127 79-130 (203)
143 PF07883 Cupin_2: Cupin domain 33.8 83 0.0018 19.3 3.7 30 97-126 39-68 (71)
144 cd06813 PLPDE_III_DSD_D-TA_lik 33.3 52 0.0011 28.2 3.5 36 98-135 342-378 (388)
145 COG0298 HypC Hydrogenase matur 33.1 51 0.0011 23.4 2.8 14 98-111 38-52 (82)
146 TIGR00074 hypC_hupF hydrogenas 32.9 55 0.0012 22.6 2.9 15 97-111 34-49 (76)
147 COG0261 RplU Ribosomal protein 30.7 87 0.0019 23.1 3.8 39 89-130 4-45 (103)
148 cd07376 PLPDE_III_DSD_D-TA_lik 30.1 79 0.0017 26.2 3.9 37 97-135 304-341 (345)
149 TIGR03784 marine_sortase sorta 30.0 72 0.0016 24.9 3.5 44 86-130 90-139 (174)
150 PRK05889 putative acetyl-CoA c 30.0 1.6E+02 0.0034 19.0 5.3 50 84-136 8-71 (71)
151 PF10377 ATG11: Autophagy-rela 29.5 76 0.0017 23.7 3.4 35 98-132 42-82 (129)
152 cd04456 S1_IF1A_like S1_IF1A_l 29.3 1.4E+02 0.003 20.5 4.4 39 35-73 23-61 (78)
153 smart00696 DM9 Repeats found i 29.0 69 0.0015 21.5 2.8 45 74-118 12-63 (71)
154 PF00924 MS_channel: Mechanose 28.7 62 0.0013 24.5 2.9 21 98-118 60-80 (206)
155 cd06812 PLPDE_III_DSD_D-TA_lik 28.6 89 0.0019 26.2 4.0 36 98-135 331-368 (374)
156 PF11604 CusF_Ec: Copper bindi 28.5 79 0.0017 20.9 3.0 11 98-108 42-52 (70)
157 PF15436 PGBA_N: Plasminogen-b 28.4 98 0.0021 25.5 4.1 45 65-109 25-90 (218)
158 cd06555 ASCH_PF0470_like ASC-1 27.5 38 0.00083 24.9 1.4 15 98-112 31-45 (109)
159 COG3264 Small-conductance mech 26.8 70 0.0015 31.3 3.4 15 98-112 660-674 (835)
160 PRK06763 F0F1 ATP synthase sub 26.3 58 0.0012 26.9 2.4 25 84-108 41-84 (213)
161 KOG3209 WW domain-containing p 26.3 62 0.0013 31.7 2.9 47 57-107 757-805 (984)
162 TIGR02227 sigpep_I_bact signal 26.1 2.9E+02 0.0062 20.8 7.0 41 53-93 36-78 (163)
163 cd04451 S1_IF1 S1_IF1: Transla 25.9 51 0.0011 21.1 1.7 12 98-109 40-51 (64)
164 TIGR02656 cyanin_plasto plasto 24.6 74 0.0016 22.0 2.4 12 98-109 20-31 (99)
165 TIGR00739 yajC preprotein tran 23.9 1.1E+02 0.0024 21.2 3.2 21 98-118 37-58 (84)
166 PRK00276 infA translation init 23.9 59 0.0013 21.6 1.7 10 99-108 47-56 (72)
167 PRK10838 spr outer membrane li 23.2 30 0.00065 27.6 0.2 35 69-109 105-139 (190)
168 PRK14875 acetoin dehydrogenase 22.9 3.4E+02 0.0074 21.8 6.4 33 72-107 5-38 (371)
169 COG3450 Predicted enzyme of th 22.9 2.7E+02 0.0059 20.7 5.3 21 98-118 85-106 (116)
170 cd03701 IF2_IF5B_II IF2_IF5B_I 22.0 1.1E+02 0.0025 21.3 3.0 15 96-110 24-38 (95)
171 cd03694 GTPBP_II Domain II of 22.0 2.5E+02 0.0054 18.8 4.7 24 86-110 14-38 (87)
172 COG4043 Preprotein translocase 21.6 59 0.0013 24.2 1.5 13 97-109 32-44 (111)
173 PF02643 DUF192: Uncharacteriz 20.8 56 0.0012 23.3 1.2 22 88-109 84-108 (108)
174 cd05280 MDR_yhdh_yhfp Yhdh and 20.8 1E+02 0.0022 24.2 2.8 22 85-108 65-86 (325)
175 PF00717 Peptidase_S24: Peptid 20.8 1.8E+02 0.0039 17.9 3.6 27 85-112 12-38 (70)
176 cd00165 S4 S4/Hsp/ tRNA synthe 20.8 1.4E+02 0.003 17.5 2.9 28 98-126 41-69 (70)
177 PRK11507 ribosome-associated p 20.1 1.6E+02 0.0035 20.1 3.3 28 97-125 37-68 (70)
178 TIGR02825 B4_12hDH leukotriene 20.1 94 0.002 24.9 2.5 21 85-108 65-85 (325)
No 1
>COG0234 GroS Co-chaperonin GroES (HSP10) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.1e-34 Score=204.85 Aligned_cols=86 Identities=43% Similarity=0.675 Sum_probs=81.5
Q ss_pred ceeeccCCeEEEEEecCCCcccceEEeccCccccccceeeEEEEEcCC----CC-----cccCCCEEEecCCCceEEEeC
Q 032685 48 TKVVPQADRVLVRLEQLPEKSAGGILLPKAAVKFERYLMGEILTVGAD----VG-----QVNAGKKVLFSDISAYEVDLG 118 (136)
Q Consensus 48 ~~l~PLgDRVLVk~~e~e~~T~gGIiLP~sa~~~ek~~~G~VVAVG~g----~g-----~VkvGD~Vlf~~y~G~ev~~~ 118 (136)
|+|+||||||||++.+.|++|+|||+||++++ +|++.|+|+|||+| +| +||+||+|+|++|+|+++++|
T Consensus 1 m~ikPL~DRVlVk~~e~EekT~gGIvlpdsak--eK~~~g~VvAVG~G~~~~~g~~~~~~VkvGD~Vlf~ky~G~evk~d 78 (96)
T COG0234 1 MKIKPLGDRVLVKRVEEEEKTAGGIVLPDSAK--EKPQEGEVVAVGPGRRDENGELVPLDVKVGDRVLFGKYAGTEVKID 78 (96)
T ss_pred CCceecCCEEEEEEchhhccccCcEEecCccc--cCCcceEEEEEccceecCCCCEeccccccCCEEEECccCCcEEEEC
Confidence 68999999999999999999999999999998 89999999999996 23 699999999999999999998
Q ss_pred CCeeEEEEecCcEEEEeC
Q 032685 119 ADERHCFVKESDLLAVVE 136 (136)
Q Consensus 119 ~ge~y~ivre~DILAvle 136 (136)
|++|++++++||||+++
T Consensus 79 -geeylil~e~DILAiv~ 95 (96)
T COG0234 79 -GEEYLILSESDILAIVE 95 (96)
T ss_pred -CEEEEEechHHeeEEec
Confidence 89999999999999986
No 2
>PRK14533 groES co-chaperonin GroES; Provisional
Probab=100.00 E-value=4.4e-33 Score=198.62 Aligned_cols=86 Identities=33% Similarity=0.565 Sum_probs=81.5
Q ss_pred ceeeccCCeEEEEEecCCCcccceEEeccCccccccceeeEEEEEcCCC----CcccCCCEEEecCCCceEEEeCCCeeE
Q 032685 48 TKVVPQADRVLVRLEQLPEKSAGGILLPKAAVKFERYLMGEILTVGADV----GQVNAGKKVLFSDISAYEVDLGADERH 123 (136)
Q Consensus 48 ~~l~PLgDRVLVk~~e~e~~T~gGIiLP~sa~~~ek~~~G~VVAVG~g~----g~VkvGD~Vlf~~y~G~ev~~~~ge~y 123 (136)
|+|+||||||||++.+++++|+|||+||++++ ++++.|+|+|||+|. .+||+||+|+|++|+|++|+++ |++|
T Consensus 1 ~~i~Pl~DRVLVk~~~~e~~T~gGI~Lp~~a~--ek~~~G~VvavG~g~~~~~~~Vk~GD~Vl~~~y~g~ev~~~-~~~y 77 (91)
T PRK14533 1 MKVIPLGERLLIKPIKEEKKTEGGIVLPDSAK--EKPMKAEVVAVGKLDDEEDFDIKVGDKVIFSKYAGTEIKID-DEDY 77 (91)
T ss_pred CCceEcCCEEEEEEccccceecccEEeccccc--CCcceEEEEEECCCCccccccccCCCEEEEccCCCeEEEEC-CEEE
Confidence 57999999999999999999999999999997 789999999999974 4799999999999999999998 8999
Q ss_pred EEEecCcEEEEeC
Q 032685 124 CFVKESDLLAVVE 136 (136)
Q Consensus 124 ~ivre~DILAvle 136 (136)
+|++++||||++|
T Consensus 78 ~iv~e~DILa~i~ 90 (91)
T PRK14533 78 IIIDVNDILAKIE 90 (91)
T ss_pred EEEEhHhEEEEee
Confidence 9999999999986
No 3
>PTZ00414 10 kDa heat shock protein; Provisional
Probab=100.00 E-value=4.6e-33 Score=201.79 Aligned_cols=86 Identities=26% Similarity=0.467 Sum_probs=81.7
Q ss_pred ceeeccCCeEEEEEecCCCcccceEEeccCccccccceeeEEEEEcCCC----CcccCCCEEEecCCCceEEEeCCCeeE
Q 032685 48 TKVVPQADRVLVRLEQLPEKSAGGILLPKAAVKFERYLMGEILTVGADV----GQVNAGKKVLFSDISAYEVDLGADERH 123 (136)
Q Consensus 48 ~~l~PLgDRVLVk~~e~e~~T~gGIiLP~sa~~~ek~~~G~VVAVG~g~----g~VkvGD~Vlf~~y~G~ev~~~~ge~y 123 (136)
++|+||+|||||++.++|++|+|||+||++++ +++++|+|+|||+|. .+||+||+|+|++|+|++|+++ |++|
T Consensus 10 ~~ikPL~dRVLVk~~~~e~kT~gGIiLP~sak--ekp~~g~VvAVG~G~~~~~~~Vk~GD~Vl~~~y~Gtevk~d-g~ey 86 (100)
T PTZ00414 10 KKLQPLGQRVLVKRTLAAKQTKAGVLIPEQVA--GKVNEGTVVAVAAATKDWTPTVKVGDTVLLPEFGGSSVKVE-GEEF 86 (100)
T ss_pred ccceecCCEEEEEEcccccccccCEEcccccc--cCCceeEEEEECCCCccccceecCCCEEEEcCCCCcEEEEC-CEEE
Confidence 67999999999999999999999999999997 789999999999984 4699999999999999999998 8999
Q ss_pred EEEecCcEEEEeC
Q 032685 124 CFVKESDLLAVVE 136 (136)
Q Consensus 124 ~ivre~DILAvle 136 (136)
++++++||||+++
T Consensus 87 ~i~~e~DILavi~ 99 (100)
T PTZ00414 87 FLYNEDSLLGVLQ 99 (100)
T ss_pred EEEEhHHEEEEec
Confidence 9999999999986
No 4
>PRK00364 groES co-chaperonin GroES; Reviewed
Probab=99.98 E-value=2.7e-32 Score=195.09 Aligned_cols=86 Identities=43% Similarity=0.670 Sum_probs=81.0
Q ss_pred ceeeccCCeEEEEEecCCCcccceEEeccCccccccceeeEEEEEcCCC----C-----cccCCCEEEecCCCceEEEeC
Q 032685 48 TKVVPQADRVLVRLEQLPEKSAGGILLPKAAVKFERYLMGEILTVGADV----G-----QVNAGKKVLFSDISAYEVDLG 118 (136)
Q Consensus 48 ~~l~PLgDRVLVk~~e~e~~T~gGIiLP~sa~~~ek~~~G~VVAVG~g~----g-----~VkvGD~Vlf~~y~G~ev~~~ 118 (136)
|+|+||+|||||++.+.+++|+|||+||++++ ++++.|+|+|||||. | +||+||+|+|++|+|++|+++
T Consensus 1 ~~i~Pl~drVLV~~~~~e~~T~gGI~Lp~~a~--~k~~~G~VvaVG~G~~~~~G~~~~~~vk~GD~Vlf~~~~g~ev~~~ 78 (95)
T PRK00364 1 MNLKPLGDRVLVKRLEEEEKTAGGIVLPDSAK--EKPQEGEVVAVGPGRRLDNGERVPLDVKVGDKVLFGKYAGTEVKID 78 (95)
T ss_pred CcceEcCCEEEEEEcccCccccceEEcCcccc--CCcceEEEEEECCCeECCCCCEeecccCCCCEEEEcCCCCeEEEEC
Confidence 57999999999999999999999999999987 789999999999973 3 699999999999999999998
Q ss_pred CCeeEEEEecCcEEEEeC
Q 032685 119 ADERHCFVKESDLLAVVE 136 (136)
Q Consensus 119 ~ge~y~ivre~DILAvle 136 (136)
|++|+|++++||||++|
T Consensus 79 -~~~y~iv~~~DIlavi~ 95 (95)
T PRK00364 79 -GEEYLILRESDILAIVE 95 (95)
T ss_pred -CEEEEEEEHHHEEEEeC
Confidence 89999999999999987
No 5
>cd00320 cpn10 Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10 cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase, to assist the folding and assembly of proteins and is found in eubacterial cytosol, as well as in the matrix of mitochondria and chloroplasts. It forms heptameric rings with a dome-like structure, forming a lid to the large cavity of the tetradecameric cpn60 cylinder and thereby tightly regulating release and binding of proteins to the cpn60 surface.
Probab=99.97 E-value=4.4e-31 Score=188.07 Aligned_cols=84 Identities=42% Similarity=0.638 Sum_probs=79.3
Q ss_pred eeeccCCeEEEEEecCCCcccceEEeccCccccccceeeEEEEEcCCC---------CcccCCCEEEecCCCceEEEeCC
Q 032685 49 KVVPQADRVLVRLEQLPEKSAGGILLPKAAVKFERYLMGEILTVGADV---------GQVNAGKKVLFSDISAYEVDLGA 119 (136)
Q Consensus 49 ~l~PLgDRVLVk~~e~e~~T~gGIiLP~sa~~~ek~~~G~VVAVG~g~---------g~VkvGD~Vlf~~y~G~ev~~~~ 119 (136)
+|+||+|||||++.+.+++|+|||+||++++ ++++.|+|+|||||. .+|++||+|+|++|+|++|+++
T Consensus 1 ~i~Pl~DrVLV~~~~~e~~T~~GI~Lp~~~~--~k~~~g~VvAVG~g~~~~~g~~~~~~vk~GD~Vl~~~~~g~~v~~~- 77 (93)
T cd00320 1 KIKPLGDRVLVKRIEAEEKTKGGIILPDSAK--EKPQEGKVVAVGPGRRNENGERVPLSVKVGDKVLFPKYAGTEVKLD- 77 (93)
T ss_pred CceecCCEEEEEEccccceecceEEeCCCcC--CCceEEEEEEECCCeECCCCCCccccccCCCEEEECCCCceEEEEC-
Confidence 4899999999999999999999999999997 789999999999983 3699999999999999999998
Q ss_pred CeeEEEEecCcEEEEe
Q 032685 120 DERHCFVKESDLLAVV 135 (136)
Q Consensus 120 ge~y~ivre~DILAvl 135 (136)
|++|+|++++||||++
T Consensus 78 ~~~y~i~~~~DIla~i 93 (93)
T cd00320 78 GEEYLILRESDILAVI 93 (93)
T ss_pred CEEEEEEEHHHEEEEC
Confidence 8999999999999985
No 6
>PF00166 Cpn10: Chaperonin 10 Kd subunit; InterPro: IPR020818 The chaperonins are `helper' molecules required for correct folding and subsequent assembly of some proteins []. These are required for normal cell growth [], and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions. Type I chaperonins present in eubacteria, mitochondria and chloroplasts require the concerted action of 2 proteins, chaperonin 60 (cpn60) and chaperonin 10 (cpn10) []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between six to eight identical subunits, while the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The central cavity of the cylindrical cpn60 tetradecamer provides as isolated environment for protein folding whilst cpn-10 binds to cpn-60 and synchronizes the release of the folded protein in an Mg2+-ATP dependent manner []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. Escherichia coli GroES has also been shown to bind ATP cooperatively, and with an affinity comparable to that of GroEL []. Each GroEL subunit contains three structurally distinct domains: an apical, an intermediate and an equatorial domain. The apical domain contains the binding sites for both GroES and the unfolded protein substrate. The equatorial domain contains the ATP-binding site and most of the oligomeric contacts. The intermediate domain links the apical and equatorial domains and transfers allosteric information between them. The GroEL oligomer is a tetradecamer, cylindrically shaped, that is organised in two heptameric rings stacked back to back. Each GroEL ring contains a central cavity, known as the `Anfinsen cage', that provides an isolated environment for protein folding. The identical 10 kDa subunits of GroES form a dome-like heptameric oligomer in solution. ATP binding to GroES may be important in charging the seven subunits of the interacting GroEL ring with ATP, to facilitate cooperative ATP binding and hydrolysis for substrate protein release.; GO: 0006457 protein folding, 0005737 cytoplasm; PDB: 1PF9_Q 1AON_P 1SX4_T 1SVT_R 2C7D_P 1PCQ_O 2C7C_Q 1GRU_Q 1WNR_F 1P3H_I ....
Probab=99.96 E-value=3.5e-29 Score=177.52 Aligned_cols=84 Identities=40% Similarity=0.633 Sum_probs=75.3
Q ss_pred eeeccCCeEEEEEecCCCcccceEEeccCccccccceeeEEEEEcCCC---------CcccCCCEEEecCCCceEEEeCC
Q 032685 49 KVVPQADRVLVRLEQLPEKSAGGILLPKAAVKFERYLMGEILTVGADV---------GQVNAGKKVLFSDISAYEVDLGA 119 (136)
Q Consensus 49 ~l~PLgDRVLVk~~e~e~~T~gGIiLP~sa~~~ek~~~G~VVAVG~g~---------g~VkvGD~Vlf~~y~G~ev~~~~ 119 (136)
+|+||+|||||++.+.+++|+|||+||++++ +++++|+|+|||+|. ..|++||+|+|++|+|++++++
T Consensus 1 ki~Pl~drVLV~~~~~e~~T~~GiiLp~~~~--~~~~~G~VvaVG~G~~~~~g~~~~~~vk~GD~Vl~~~~~g~~v~~~- 77 (93)
T PF00166_consen 1 KIKPLGDRVLVKKIEAEEKTASGIILPESAK--EKPNQGKVVAVGPGRYNENGEEVPMDVKVGDKVLFPKYAGTEVKFD- 77 (93)
T ss_dssp EEEESTTEEEEEECSCTCTCTTSCCE-CCSS--SSEEEEEEEEE-SEEETTTSSEEETSS-TTSEEEEETTTSEEEEET-
T ss_pred CceecCCEEEEEEccccceecceEEeccccc--cccceeEEEEcCCccccCCCcEeeeeeeeccEEeccccCceEEEEC-
Confidence 6899999999999999999999999998776 789999999999952 3699999999999999999998
Q ss_pred CeeEEEEecCcEEEEe
Q 032685 120 DERHCFVKESDLLAVV 135 (136)
Q Consensus 120 ge~y~ivre~DILAvl 135 (136)
|++|+++|++||||++
T Consensus 78 ~~~~~~~~~~dIlavi 93 (93)
T PF00166_consen 78 GEKYLIVREDDILAVI 93 (93)
T ss_dssp TEEEEEEEGGGEEEEE
T ss_pred CEEEEEEEHHHeEEEC
Confidence 8999999999999986
No 7
>KOG1641 consensus Mitochondrial chaperonin [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3.2e-28 Score=176.89 Aligned_cols=93 Identities=40% Similarity=0.709 Sum_probs=83.4
Q ss_pred eccccCCceeeccCCeEEEEEecCCCcccceEEeccCccccccceeeEEEEEcCCC----C-----cccCCCEEEecCCC
Q 032685 41 IATKWEPTKVVPQADRVLVRLEQLPEKSAGGILLPKAAVKFERYLMGEILTVGADV----G-----QVNAGKKVLFSDIS 111 (136)
Q Consensus 41 ~~~~~~~~~l~PLgDRVLVk~~e~e~~T~gGIiLP~sa~~~ek~~~G~VVAVG~g~----g-----~VkvGD~Vlf~~y~ 111 (136)
+++.+..+++.|+.|||||++.+++++|+|||+||++++ +|.+.|+|+|||||. | .|++||+|+|++|+
T Consensus 2 ~~~~~~~kk~vPl~DRVLVqr~~a~~KT~gGilLPEks~--~K~~~g~VvavGpG~~~~~G~~v~~~Vk~Gd~VLlpeyg 79 (104)
T KOG1641|consen 2 ISTSWEIKKVVPLLDRVLVQRIEAPTKTAGGILLPEKSV--GKLLQGTVVAVGPGSRDKGGEIVPVSVKVGDRVLLPEYG 79 (104)
T ss_pred cchhhhhhhhccccceeeeeeeeccccccceeEeccccc--cccceEEEEEEcCccccCCCCCcCccccCCCEEEeeccC
Confidence 455677899999999999999999999999999999987 789999999999983 2 59999999999999
Q ss_pred ceEEEeCCCeeEEEEecCcEEEEe
Q 032685 112 AYEVDLGADERHCFVKESDLLAVV 135 (136)
Q Consensus 112 G~ev~~~~ge~y~ivre~DILAvl 135 (136)
|++|+++|+++|.++|++|+|+.+
T Consensus 80 Gt~V~l~~~~~~~~fr~e~~l~~~ 103 (104)
T KOG1641|consen 80 GTKVKLGDEDEYHLFRDEDDLLAI 103 (104)
T ss_pred CcEEeccCCceeEEecchhhhhhh
Confidence 999999865688888888888764
No 8
>PF08240 ADH_N: Alcohol dehydrogenase GroES-like domain; InterPro: IPR013154 This is the catalytic domain of alcohol dehydrogenases (1.1.1.1 from EC). Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure; a name derived from the superfamily of proteins with a GroES fold. Proteins with a GroES fold structure have a highly conserved hydrophobic core and a glycyl-aspartate dipeptide which is thought to maintain the fold [, ].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1YKF_D 2NVB_A 3FSR_D 1BXZ_B 3FTN_A 3MEQ_D 3UOG_B 3HZZ_B 4DVJ_A 1P0F_A ....
Probab=93.27 E-value=0.1 Score=36.42 Aligned_cols=25 Identities=28% Similarity=0.516 Sum_probs=21.7
Q ss_pred eeeEEEEEcCCCCcccCCCEEEecC
Q 032685 85 LMGEILTVGADVGQVNAGKKVLFSD 109 (136)
Q Consensus 85 ~~G~VVAVG~g~g~VkvGD~Vlf~~ 109 (136)
..|+|+++|++...+++||+|....
T Consensus 39 ~~G~V~~vG~~v~~~~~Gd~V~~~~ 63 (109)
T PF08240_consen 39 GVGVVVAVGPGVTDFKVGDRVVVSP 63 (109)
T ss_dssp EEEEEEEESTTTTSSGTT-EEEEES
T ss_pred eeeeeeeeccccccccccceeeeec
Confidence 6899999999988899999999954
No 9
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=91.99 E-value=0.15 Score=43.79 Aligned_cols=41 Identities=20% Similarity=0.299 Sum_probs=30.7
Q ss_pred CcccceEE-e---ccCccccccceeeEEEEEcCCCCcccCCCEEEecC
Q 032685 66 EKSAGGIL-L---PKAAVKFERYLMGEILTVGADVGQVNAGKKVLFSD 109 (136)
Q Consensus 66 ~~T~gGIi-L---P~sa~~~ek~~~G~VVAVG~g~g~VkvGD~Vlf~~ 109 (136)
..-..||| + |=.. .+...|.|+|||.|.-+.++||+|.|-.
T Consensus 52 ~y~RkGlY~~~plPytp---GmEaaGvVvAvG~gvtdrkvGDrVayl~ 96 (336)
T KOG1197|consen 52 LYFRKGLYDPAPLPYTP---GMEAAGVVVAVGEGVTDRKVGDRVAYLN 96 (336)
T ss_pred HHHhccccCCCCCCcCC---CcccceEEEEecCCccccccccEEEEec
Confidence 34556888 3 3222 2456899999999988999999999965
No 10
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=89.30 E-value=0.41 Score=38.31 Aligned_cols=25 Identities=20% Similarity=0.535 Sum_probs=21.5
Q ss_pred eeeEEEEEcCCCC------cccCCCEEEecC
Q 032685 85 LMGEILTVGADVG------QVNAGKKVLFSD 109 (136)
Q Consensus 85 ~~G~VVAVG~g~g------~VkvGD~Vlf~~ 109 (136)
..|+|++||++.. .+++||+|.+..
T Consensus 6 ~~G~V~~vG~~v~~~~~~~~~~~GdrV~~~~ 36 (280)
T TIGR03366 6 IVGEVVALRGGFTPADDGVPLRLGQRVVWSV 36 (280)
T ss_pred cceEEEEeCCCccccccCCCCCCCCEEEEcC
Confidence 5799999999865 799999998754
No 11
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=88.47 E-value=0.38 Score=42.23 Aligned_cols=55 Identities=27% Similarity=0.386 Sum_probs=36.1
Q ss_pred ccCCeEEEEEecC-----CCcccceEEeccCcc-ccccceeeEEEEEcCCCCcccCCCEEEe
Q 032685 52 PQADRVLVRLEQL-----PEKSAGGILLPKAAV-KFERYLMGEILTVGADVGQVNAGKKVLF 107 (136)
Q Consensus 52 PLgDRVLVk~~e~-----e~~T~gGIiLP~sa~-~~ek~~~G~VVAVG~g~g~VkvGD~Vlf 107 (136)
|=-|-|||+.... .--+-+|.+ |+.-- --.-.--|.|.+||+|+-.||+||+|+.
T Consensus 25 P~~gEVlVri~AtGVCHTD~~~~~G~~-p~~~P~vLGHEgAGiVe~VG~gVt~vkpGDhVI~ 85 (366)
T COG1062 25 PRAGEVLVRITATGVCHTDAHTLSGDD-PEGFPAVLGHEGAGIVEAVGEGVTSVKPGDHVIL 85 (366)
T ss_pred CCCCeEEEEEEEeeccccchhhhcCCC-CCCCceecccccccEEEEecCCccccCCCCEEEE
Confidence 6778999988762 233444443 22100 0001246999999999999999999985
No 12
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=87.73 E-value=0.71 Score=38.88 Aligned_cols=55 Identities=25% Similarity=0.377 Sum_probs=38.4
Q ss_pred ccCCeEEEEEecC-----CCcccceE---E--eccCccccccceeeEEEEEcCCCCcccCCCEEEecC
Q 032685 52 PQADRVLVRLEQL-----PEKSAGGI---L--LPKAAVKFERYLMGEILTVGADVGQVNAGKKVLFSD 109 (136)
Q Consensus 52 PLgDRVLVk~~e~-----e~~T~gGI---i--LP~sa~~~ek~~~G~VVAVG~g~g~VkvGD~Vlf~~ 109 (136)
|-.+.|||+.... +.....|- . +|.-. ..-..|+|++||+++..+++||+|.+..
T Consensus 25 p~~geVlVrV~a~gvN~~D~~~r~G~~~~~~~~P~i~---G~d~aG~V~avG~~V~~~~~GdrV~~~~ 89 (326)
T COG0604 25 PGPGEVLVRVKAAGVNPIDVLVRQGLAPPVRPLPFIP---GSEAAGVVVAVGSGVTGFKVGDRVAALG 89 (326)
T ss_pred CCCCeEEEEEEEeecChHHHHhccCCCCCCCCCCCcc---cceeEEEEEEeCCCCCCcCCCCEEEEcc
Confidence 7779999998763 22333332 1 23222 2347899999999988779999999984
No 13
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=84.62 E-value=1.7 Score=37.95 Aligned_cols=62 Identities=26% Similarity=0.373 Sum_probs=39.1
Q ss_pred eccCCeEEEEEecCCC-----cccceEEe--ccCccccccceeeEEEEEcCCCCcccCCCEEEecCCC-ce
Q 032685 51 VPQADRVLVRLEQLPE-----KSAGGILL--PKAAVKFERYLMGEILTVGADVGQVNAGKKVLFSDIS-AY 113 (136)
Q Consensus 51 ~PLgDRVLVk~~e~e~-----~T~gGIiL--P~sa~~~ek~~~G~VVAVG~g~g~VkvGD~Vlf~~y~-G~ 113 (136)
.|..| |+|+....+- -.--|.|= |+-..-....-.|+||+||.+...+|+||+|+-..-+ |+
T Consensus 45 ~~~s~-v~Vk~LAaPINPsDIN~IQGvYpvrP~~PAVgGnEGv~eVv~vGs~vkgfk~Gd~VIp~~a~lGt 114 (354)
T KOG0025|consen 45 VPGSD-VLVKMLAAPINPSDINQIQGVYPVRPELPAVGGNEGVGEVVAVGSNVKGFKPGDWVIPLSANLGT 114 (354)
T ss_pred CCCCc-eeeeeeecCCChHHhhhhccccCCCCCCCcccCCcceEEEEEecCCcCccCCCCeEeecCCCCcc
Confidence 46677 9999887541 12235541 2111101234689999999976559999999987644 53
No 14
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=84.14 E-value=1.1 Score=38.41 Aligned_cols=24 Identities=29% Similarity=0.516 Sum_probs=21.9
Q ss_pred eeeEEEEEcCCCCcccCCCEEEec
Q 032685 85 LMGEILTVGADVGQVNAGKKVLFS 108 (136)
Q Consensus 85 ~~G~VVAVG~g~g~VkvGD~Vlf~ 108 (136)
..|+|++||++...+++||+|.+.
T Consensus 69 ~~G~V~~vG~~V~~~~vGdrV~~~ 92 (393)
T TIGR02819 69 ITGEVIEKGRDVEFIKIGDIVSVP 92 (393)
T ss_pred eEEEEEEEcCccccccCCCEEEEe
Confidence 689999999998889999999875
No 15
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=83.40 E-value=2 Score=37.76 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=20.6
Q ss_pred eeeEEEEEcCCCCcccCCCEEE
Q 032685 85 LMGEILTVGADVGQVNAGKKVL 106 (136)
Q Consensus 85 ~~G~VVAVG~g~g~VkvGD~Vl 106 (136)
..|.|.+||+|.-.||+||+|+
T Consensus 69 aaGIVESvGegV~~vk~GD~Vi 90 (375)
T KOG0022|consen 69 AAGIVESVGEGVTTVKPGDHVI 90 (375)
T ss_pred ceeEEEEecCCccccCCCCEEe
Confidence 4699999999999999999998
No 16
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=80.55 E-value=1.6 Score=35.92 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=20.7
Q ss_pred eeeEEEEEcCCCCcccCCCEEEec
Q 032685 85 LMGEILTVGADVGQVNAGKKVLFS 108 (136)
Q Consensus 85 ~~G~VVAVG~g~g~VkvGD~Vlf~ 108 (136)
..|+|+++|++ ..+++||+|+..
T Consensus 65 ~~G~V~~vG~~-~~~~vGdrV~~~ 87 (355)
T cd08230 65 ALGVVEEVGDG-SGLSPGDLVVPT 87 (355)
T ss_pred cceEEEEecCC-CCCCCCCEEEec
Confidence 57999999998 789999999864
No 17
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=80.31 E-value=1.8 Score=35.16 Aligned_cols=23 Identities=22% Similarity=0.557 Sum_probs=20.4
Q ss_pred eeeEEEEEcCCCCcccCCCEEEec
Q 032685 85 LMGEILTVGADVGQVNAGKKVLFS 108 (136)
Q Consensus 85 ~~G~VVAVG~g~g~VkvGD~Vlf~ 108 (136)
..|+|+++|++. .+++||+|...
T Consensus 66 ~~G~V~~vG~~v-~~~vGdrV~~~ 88 (308)
T TIGR01202 66 SVGRVVEAGPDT-GFRPGDRVFVP 88 (308)
T ss_pred eEEEEEEecCCC-CCCCCCEEEEe
Confidence 689999999987 69999999974
No 18
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=79.28 E-value=2 Score=37.25 Aligned_cols=25 Identities=24% Similarity=0.486 Sum_probs=22.6
Q ss_pred ceeeEEEEEcCCCCcccCCCEEEec
Q 032685 84 YLMGEILTVGADVGQVNAGKKVLFS 108 (136)
Q Consensus 84 ~~~G~VVAVG~g~g~VkvGD~Vlf~ 108 (136)
...|+|++||+++..+|+||+|-.+
T Consensus 64 EivG~V~~vG~~V~~~k~GDrVgV~ 88 (339)
T COG1064 64 EIVGTVVEVGEGVTGLKVGDRVGVG 88 (339)
T ss_pred ceEEEEEEecCCCccCCCCCEEEec
Confidence 3689999999998899999999994
No 19
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=78.86 E-value=2.1 Score=35.74 Aligned_cols=23 Identities=22% Similarity=0.494 Sum_probs=20.8
Q ss_pred eeeEEEEEcCCCCcccCCCEEEe
Q 032685 85 LMGEILTVGADVGQVNAGKKVLF 107 (136)
Q Consensus 85 ~~G~VVAVG~g~g~VkvGD~Vlf 107 (136)
..|+|+++|++...+++||+|.+
T Consensus 74 ~~G~V~~vG~~v~~~~vGdrV~~ 96 (360)
T PLN02586 74 IVGIVTKLGKNVKKFKEGDRVGV 96 (360)
T ss_pred eeEEEEEECCCCCccCCCCEEEE
Confidence 57999999998878999999985
No 20
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=78.10 E-value=2.4 Score=34.65 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=21.8
Q ss_pred ceeeEEEEEcCCCCcccCCCEEEec
Q 032685 84 YLMGEILTVGADVGQVNAGKKVLFS 108 (136)
Q Consensus 84 ~~~G~VVAVG~g~g~VkvGD~Vlf~ 108 (136)
...|+|+++|++...+++||+|...
T Consensus 60 e~~G~V~~vG~~v~~~~vGd~V~~~ 84 (347)
T PRK10309 60 EFSGYVEAVGSGVDDLHPGDAVACV 84 (347)
T ss_pred ceEEEEEEeCCCCCCCCCCCEEEEC
Confidence 3679999999988789999999864
No 21
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=76.43 E-value=2.7 Score=35.59 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=20.9
Q ss_pred eeeEEEEEcCCCCcccCCCEEEe
Q 032685 85 LMGEILTVGADVGQVNAGKKVLF 107 (136)
Q Consensus 85 ~~G~VVAVG~g~g~VkvGD~Vlf 107 (136)
..|+|+++|++...+++||+|.+
T Consensus 68 ~aG~Vv~vG~~v~~~~vGdrV~~ 90 (375)
T PLN02178 68 IVGIATKVGKNVTKFKEGDRVGV 90 (375)
T ss_pred eeEEEEEECCCCCccCCCCEEEE
Confidence 57999999998888999999985
No 22
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=76.23 E-value=2.8 Score=34.52 Aligned_cols=24 Identities=33% Similarity=0.592 Sum_probs=21.4
Q ss_pred eeeEEEEEcCCCCcccCCCEEEec
Q 032685 85 LMGEILTVGADVGQVNAGKKVLFS 108 (136)
Q Consensus 85 ~~G~VVAVG~g~g~VkvGD~Vlf~ 108 (136)
..|+|+++|++...+++||+|++.
T Consensus 64 ~~G~V~~vG~~v~~~~~Gd~V~~~ 87 (329)
T TIGR02822 64 VVGEVAGRGADAGGFAVGDRVGIA 87 (329)
T ss_pred eEEEEEEECCCCcccCCCCEEEEc
Confidence 689999999988789999999863
No 23
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=76.18 E-value=2.8 Score=34.87 Aligned_cols=23 Identities=26% Similarity=0.560 Sum_probs=20.8
Q ss_pred eeeEEEEEcCCCCcccCCCEEEe
Q 032685 85 LMGEILTVGADVGQVNAGKKVLF 107 (136)
Q Consensus 85 ~~G~VVAVG~g~g~VkvGD~Vlf 107 (136)
..|+|+++|++...+++||+|+.
T Consensus 69 ~~G~V~~vG~~v~~~~~GdrV~~ 91 (371)
T cd08281 69 AAGVVVEVGEGVTDLEVGDHVVL 91 (371)
T ss_pred ceeEEEEeCCCCCcCCCCCEEEE
Confidence 57999999998778999999986
No 24
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=75.50 E-value=1.3 Score=38.93 Aligned_cols=56 Identities=21% Similarity=0.239 Sum_probs=35.7
Q ss_pred CCeEEEEEecC-------CCcccceEEeccCccc--cccceeeEEEEEcCCCCcccCCCEEEecC
Q 032685 54 ADRVLVRLEQL-------PEKSAGGILLPKAAVK--FERYLMGEILTVGADVGQVNAGKKVLFSD 109 (136)
Q Consensus 54 gDRVLVk~~e~-------e~~T~gGIiLP~sa~~--~ek~~~G~VVAVG~g~g~VkvGD~Vlf~~ 109 (136)
-|-|||+.... .--+.|+|..+..... -.-...|.|..||+++..+|+||+|....
T Consensus 29 p~eVlv~i~a~GICGSDvHy~~~G~ig~~v~k~PmvlGHEssGiV~evG~~Vk~LkVGDrVaiEp 93 (354)
T KOG0024|consen 29 PDEVLVAIKAVGICGSDVHYYTHGRIGDFVVKKPMVLGHESSGIVEEVGDEVKHLKVGDRVAIEP 93 (354)
T ss_pred CCEEEEEeeeEEecCccchhhccCCcCccccccccccccccccchhhhcccccccccCCeEEecC
Confidence 45677765431 2345566654421110 01135799999999999999999999864
No 25
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=75.19 E-value=3 Score=34.52 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=21.3
Q ss_pred eeeEEEEEcCCCCcccCCCEEEec
Q 032685 85 LMGEILTVGADVGQVNAGKKVLFS 108 (136)
Q Consensus 85 ~~G~VVAVG~g~g~VkvGD~Vlf~ 108 (136)
..|+|+++|++...+++||+|+..
T Consensus 64 ~~G~V~~vG~~v~~~~~GdrV~~~ 87 (369)
T cd08301 64 AAGIVESVGEGVTDLKPGDHVLPV 87 (369)
T ss_pred cceEEEEeCCCCCccccCCEEEEc
Confidence 579999999987789999999863
No 26
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=75.08 E-value=3.2 Score=33.56 Aligned_cols=25 Identities=12% Similarity=-0.129 Sum_probs=21.7
Q ss_pred ceeeEEEEEcCCCCcccCCCEEEec
Q 032685 84 YLMGEILTVGADVGQVNAGKKVLFS 108 (136)
Q Consensus 84 ~~~G~VVAVG~g~g~VkvGD~Vlf~ 108 (136)
...|+|+++|++...+++||+|..-
T Consensus 75 e~~G~V~~vG~~v~~~~~Gd~V~~~ 99 (345)
T cd08293 75 DGGGVGVVEESKHQKFAVGDIVTSF 99 (345)
T ss_pred EeeEEEEEeccCCCCCCCCCEEEec
Confidence 3679999999988789999999863
No 27
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=74.61 E-value=6.8 Score=32.32 Aligned_cols=23 Identities=17% Similarity=0.294 Sum_probs=19.5
Q ss_pred eeeEEEEEcCCCCcccCCCEEEecC
Q 032685 85 LMGEILTVGADVGQVNAGKKVLFSD 109 (136)
Q Consensus 85 ~~G~VVAVG~g~g~VkvGD~Vlf~~ 109 (136)
..|+|+++|.+ .+++||+|.+..
T Consensus 66 ~~G~V~~~g~~--~~~vGdrV~~~~ 88 (341)
T cd08237 66 GIGVVVSDPTG--TYKVGTKVVMVP 88 (341)
T ss_pred eEEEEEeeCCC--ccCCCCEEEECC
Confidence 68999998864 699999998754
No 28
>PRK10083 putative oxidoreductase; Provisional
Probab=74.58 E-value=3.7 Score=33.08 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=21.2
Q ss_pred eeeEEEEEcCCCCcccCCCEEEec
Q 032685 85 LMGEILTVGADVGQVNAGKKVLFS 108 (136)
Q Consensus 85 ~~G~VVAVG~g~g~VkvGD~Vlf~ 108 (136)
..|+|+++|++...+++||+|+..
T Consensus 61 ~~G~V~~vG~~v~~~~~Gd~V~~~ 84 (339)
T PRK10083 61 FFGVIDAVGEGVDAARIGERVAVD 84 (339)
T ss_pred eEEEEEEECCCCccCCCCCEEEEc
Confidence 579999999987789999999853
No 29
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=73.72 E-value=3.6 Score=33.30 Aligned_cols=25 Identities=24% Similarity=0.484 Sum_probs=21.8
Q ss_pred eeeEEEEEcCCCCcccCCCEEEecC
Q 032685 85 LMGEILTVGADVGQVNAGKKVLFSD 109 (136)
Q Consensus 85 ~~G~VVAVG~g~g~VkvGD~Vlf~~ 109 (136)
..|+|+++|++...+++||+|+...
T Consensus 62 ~~G~V~~vG~~v~~~~~Gd~V~~~~ 86 (339)
T cd08239 62 PAGVVVAVGPGVTHFRVGDRVMVYH 86 (339)
T ss_pred ceEEEEEECCCCccCCCCCEEEECC
Confidence 5799999999877899999998753
No 30
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=73.49 E-value=3.4 Score=35.11 Aligned_cols=24 Identities=25% Similarity=0.526 Sum_probs=21.0
Q ss_pred eeeEEEEEcCCCC-cccCCCEEEec
Q 032685 85 LMGEILTVGADVG-QVNAGKKVLFS 108 (136)
Q Consensus 85 ~~G~VVAVG~g~g-~VkvGD~Vlf~ 108 (136)
..|+|++||++.. .+++||+|...
T Consensus 70 ~~G~V~~vG~~v~~~~~vGdrV~~~ 94 (410)
T cd08238 70 FAGTILKVGKKWQGKYKPGQRFVIQ 94 (410)
T ss_pred cEEEEEEeCCCccCCCCCCCEEEEc
Confidence 5799999999875 69999999875
No 31
>PLN02827 Alcohol dehydrogenase-like
Probab=73.03 E-value=3.4 Score=34.81 Aligned_cols=24 Identities=25% Similarity=0.410 Sum_probs=21.5
Q ss_pred eeeEEEEEcCCCCcccCCCEEEec
Q 032685 85 LMGEILTVGADVGQVNAGKKVLFS 108 (136)
Q Consensus 85 ~~G~VVAVG~g~g~VkvGD~Vlf~ 108 (136)
..|+|+++|++...+++||+|+..
T Consensus 71 ~~G~V~~vG~~v~~~~~GdrV~~~ 94 (378)
T PLN02827 71 ASGIVESIGEGVTEFEKGDHVLTV 94 (378)
T ss_pred ceEEEEEcCCCCcccCCCCEEEEe
Confidence 579999999988789999999975
No 32
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=72.68 E-value=8.1 Score=30.32 Aligned_cols=27 Identities=19% Similarity=0.249 Sum_probs=22.5
Q ss_pred eeeEEEEEcCCCCcccCCCEEEecCCC
Q 032685 85 LMGEILTVGADVGQVNAGKKVLFSDIS 111 (136)
Q Consensus 85 ~~G~VVAVG~g~g~VkvGD~Vlf~~y~ 111 (136)
..|+|+++|++...+++||+|+.-.++
T Consensus 59 ~~G~V~~vG~~v~~~~~Gd~V~~~~~g 85 (312)
T cd08269 59 GWGRVVALGPGVRGLAVGDRVAGLSGG 85 (312)
T ss_pred eEEEEEEECCCCcCCCCCCEEEEecCC
Confidence 579999999987789999999975433
No 33
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=72.16 E-value=4 Score=33.70 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=21.0
Q ss_pred eeeEEEEEcCCCCcccCCCEEEe
Q 032685 85 LMGEILTVGADVGQVNAGKKVLF 107 (136)
Q Consensus 85 ~~G~VVAVG~g~g~VkvGD~Vlf 107 (136)
..|+|+++|++...+++||+|..
T Consensus 62 ~~G~V~~vG~~v~~~~~GdrV~~ 84 (358)
T TIGR03451 62 AAGVVEAVGEGVTDVAPGDYVVL 84 (358)
T ss_pred eEEEEEEeCCCCcccCCCCEEEE
Confidence 57999999998878999999986
No 34
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=71.96 E-value=4.1 Score=34.00 Aligned_cols=24 Identities=29% Similarity=0.343 Sum_probs=21.4
Q ss_pred eeeEEEEEcCCCCcccCCCEEEec
Q 032685 85 LMGEILTVGADVGQVNAGKKVLFS 108 (136)
Q Consensus 85 ~~G~VVAVG~g~g~VkvGD~Vlf~ 108 (136)
..|+|+++|++...+++||+|...
T Consensus 63 ~~G~V~~vG~~v~~~~~GdrV~~~ 86 (368)
T TIGR02818 63 GAGIVEAVGEGVTSVKVGDHVIPL 86 (368)
T ss_pred cEEEEEEECCCCccCCCCCEEEEc
Confidence 579999999988789999999864
No 35
>PLN02740 Alcohol dehydrogenase-like
Probab=71.88 E-value=4.1 Score=34.16 Aligned_cols=24 Identities=29% Similarity=0.428 Sum_probs=21.2
Q ss_pred eeeEEEEEcCCCCcccCCCEEEec
Q 032685 85 LMGEILTVGADVGQVNAGKKVLFS 108 (136)
Q Consensus 85 ~~G~VVAVG~g~g~VkvGD~Vlf~ 108 (136)
..|+|+++|++...+++||+|+..
T Consensus 73 ~~G~V~~vG~~v~~~~vGdrV~~~ 96 (381)
T PLN02740 73 AAGIVESVGEGVEDLKAGDHVIPI 96 (381)
T ss_pred ceEEEEEeCCCCCcCCCCCEEEec
Confidence 579999999987789999999864
No 36
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=71.73 E-value=5.3 Score=32.35 Aligned_cols=25 Identities=28% Similarity=0.512 Sum_probs=21.6
Q ss_pred ceeeEEEEEcCCCCcccCCCEEEec
Q 032685 84 YLMGEILTVGADVGQVNAGKKVLFS 108 (136)
Q Consensus 84 ~~~G~VVAVG~g~g~VkvGD~Vlf~ 108 (136)
...|.|+++|++...+++||+|+.+
T Consensus 61 e~~G~V~~~G~~~~~~~~Gd~V~~~ 85 (345)
T cd08260 61 EFAGVVVEVGEDVSRWRVGDRVTVP 85 (345)
T ss_pred ceeEEEEEECCCCccCCCCCEEEEC
Confidence 3679999999987789999999863
No 37
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=71.39 E-value=4.3 Score=33.10 Aligned_cols=23 Identities=26% Similarity=0.562 Sum_probs=20.9
Q ss_pred eeeEEEEEcCCCCcccCCCEEEe
Q 032685 85 LMGEILTVGADVGQVNAGKKVLF 107 (136)
Q Consensus 85 ~~G~VVAVG~g~g~VkvGD~Vlf 107 (136)
..|+|+++|++...+++||+|+.
T Consensus 72 ~~G~V~~vG~~v~~~~~Gd~V~~ 94 (351)
T cd08233 72 FSGVVVEVGSGVTGFKVGDRVVV 94 (351)
T ss_pred ceEEEEEeCCCCCCCCCCCEEEE
Confidence 57999999998778999999986
No 38
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=71.08 E-value=4.3 Score=33.70 Aligned_cols=24 Identities=29% Similarity=0.358 Sum_probs=21.3
Q ss_pred eeeEEEEEcCCCCcccCCCEEEec
Q 032685 85 LMGEILTVGADVGQVNAGKKVLFS 108 (136)
Q Consensus 85 ~~G~VVAVG~g~g~VkvGD~Vlf~ 108 (136)
..|+|+++|++...+++||+|+..
T Consensus 64 ~~G~V~~vG~~v~~~~vGdrV~~~ 87 (368)
T cd08300 64 GAGIVESVGEGVTSVKPGDHVIPL 87 (368)
T ss_pred eeEEEEEeCCCCccCCCCCEEEEc
Confidence 579999999987789999999864
No 39
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=70.93 E-value=4.4 Score=33.67 Aligned_cols=24 Identities=33% Similarity=0.578 Sum_probs=21.1
Q ss_pred ceeeEEEEEcCCCCcccCCCEEEe
Q 032685 84 YLMGEILTVGADVGQVNAGKKVLF 107 (136)
Q Consensus 84 ~~~G~VVAVG~g~g~VkvGD~Vlf 107 (136)
...|+|+++|++...+++||+|++
T Consensus 70 E~~G~Vv~vG~~v~~~~~Gd~V~~ 93 (357)
T PLN02514 70 EVVGEVVEVGSDVSKFTVGDIVGV 93 (357)
T ss_pred eeeEEEEEECCCcccccCCCEEEE
Confidence 367999999998778999999985
No 40
>PF09871 DUF2098: Uncharacterized protein conserved in archaea (DUF2098); InterPro: IPR019209 This family of proteins have no known function.
Probab=70.61 E-value=9 Score=27.46 Aligned_cols=35 Identities=14% Similarity=0.326 Sum_probs=27.9
Q ss_pred cccCCCEEEecCCC--c--eEEEeCCCeeEEEEecCcEE
Q 032685 98 QVNAGKKVLFSDIS--A--YEVDLGADERHCFVKESDLL 132 (136)
Q Consensus 98 ~VkvGD~Vlf~~y~--G--~ev~~~~ge~y~ivre~DIL 132 (136)
.+++|+.|.|..-+ | .+|+.+||+.|+++...|++
T Consensus 2 ~I~vGs~VRY~~TGT~G~V~diK~ed~~~wv~LD~t~L~ 40 (91)
T PF09871_consen 2 PIKVGSYVRYINTGTVGKVVDIKEEDGETWVLLDSTDLY 40 (91)
T ss_pred cceeCCEEEECCCCeEEEEEEEEEeCCCeEEEEccCCce
Confidence 47899999999855 4 57777778999999777764
No 41
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=70.39 E-value=5.4 Score=31.58 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=22.4
Q ss_pred ceeeEEEEEcCCCCcccCCCEEEecC
Q 032685 84 YLMGEILTVGADVGQVNAGKKVLFSD 109 (136)
Q Consensus 84 ~~~G~VVAVG~g~g~VkvGD~Vlf~~ 109 (136)
...|+|+++|++...+++||+|+...
T Consensus 65 e~~G~V~~~G~~v~~~~~Gd~V~~~~ 90 (324)
T cd08292 65 EAVGVVDAVGEGVKGLQVGQRVAVAP 90 (324)
T ss_pred ceEEEEEEeCCCCCCCCCCCEEEecc
Confidence 36899999999877899999998754
No 42
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=69.77 E-value=4.8 Score=33.41 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=21.4
Q ss_pred eeeEEEEEcCCCCcccCCCEEEec
Q 032685 85 LMGEILTVGADVGQVNAGKKVLFS 108 (136)
Q Consensus 85 ~~G~VVAVG~g~g~VkvGD~Vlf~ 108 (136)
..|+|+++|++...+++||+|+..
T Consensus 63 ~~G~V~~vG~~v~~~~~GdrV~~~ 86 (365)
T cd08277 63 GAGIVESVGEGVTNLKPGDKVIPL 86 (365)
T ss_pred eeEEEEeeCCCCccCCCCCEEEEC
Confidence 579999999988789999999864
No 43
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=69.65 E-value=5.2 Score=32.01 Aligned_cols=25 Identities=24% Similarity=0.494 Sum_probs=21.7
Q ss_pred ceeeEEEEEcCCCCcccCCCEEEec
Q 032685 84 YLMGEILTVGADVGQVNAGKKVLFS 108 (136)
Q Consensus 84 ~~~G~VVAVG~g~g~VkvGD~Vlf~ 108 (136)
...|+|+++|++...+++||+|+..
T Consensus 65 e~~G~V~~vG~~v~~~~~Gd~V~~~ 89 (336)
T TIGR02817 65 DAAGVVVAVGDEVTLFKPGDEVWYA 89 (336)
T ss_pred eeEEEEEEeCCCCCCCCCCCEEEEc
Confidence 3679999999987789999999864
No 44
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=69.40 E-value=4.8 Score=32.50 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=20.7
Q ss_pred eeeEEEEEcCCCCcccCCCEEEe
Q 032685 85 LMGEILTVGADVGQVNAGKKVLF 107 (136)
Q Consensus 85 ~~G~VVAVG~g~g~VkvGD~Vlf 107 (136)
..|+|++||++...+++||+|+.
T Consensus 61 ~~G~V~~vG~~v~~~~~Gd~V~~ 83 (345)
T cd08287 61 FVGVVEEVGSEVTSVKPGDFVIA 83 (345)
T ss_pred eEEEEEEeCCCCCccCCCCEEEe
Confidence 57999999998778999999986
No 45
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=69.16 E-value=5.4 Score=32.37 Aligned_cols=25 Identities=24% Similarity=0.464 Sum_probs=21.8
Q ss_pred ceeeEEEEEcCCCCcccCCCEEEec
Q 032685 84 YLMGEILTVGADVGQVNAGKKVLFS 108 (136)
Q Consensus 84 ~~~G~VVAVG~g~g~VkvGD~Vlf~ 108 (136)
...|+|+++|++...+++||+|+..
T Consensus 62 e~~G~V~~vG~~v~~~~~Gd~V~~~ 86 (340)
T TIGR00692 62 EVAGEVVGIGPGVEGIKVGDYVSVE 86 (340)
T ss_pred ceEEEEEEECCCCCcCCCCCEEEEC
Confidence 3689999999987789999999874
No 46
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=69.15 E-value=5.8 Score=30.04 Aligned_cols=25 Identities=28% Similarity=0.437 Sum_probs=22.0
Q ss_pred eeeEEEEEcCCCCcccCCCEEEecC
Q 032685 85 LMGEILTVGADVGQVNAGKKVLFSD 109 (136)
Q Consensus 85 ~~G~VVAVG~g~g~VkvGD~Vlf~~ 109 (136)
..|+|+++|++...+++||+|+...
T Consensus 37 ~~G~v~~~G~~v~~~~~Gd~V~~~~ 61 (271)
T cd05188 37 GAGVVVEVGPGVTGVKVGDRVVVLP 61 (271)
T ss_pred cEEEEEEECCCCCcCCCCCEEEEcC
Confidence 5799999999877899999999754
No 47
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=68.06 E-value=5.3 Score=33.14 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=21.1
Q ss_pred ceeeEEEEEcCCCCcccCCCEEEe
Q 032685 84 YLMGEILTVGADVGQVNAGKKVLF 107 (136)
Q Consensus 84 ~~~G~VVAVG~g~g~VkvGD~Vlf 107 (136)
...|+|+++|++...+++||+|..
T Consensus 62 e~~G~V~~vG~~v~~~~~Gd~V~~ 85 (365)
T cd08278 62 EGAGVVEAVGSAVTGLKPGDHVVL 85 (365)
T ss_pred ceeEEEEEeCCCcccCCCCCEEEE
Confidence 367999999998778999999994
No 48
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=68.00 E-value=5.7 Score=31.72 Aligned_cols=24 Identities=29% Similarity=0.481 Sum_probs=21.1
Q ss_pred eeeEEEEEcCCCCcccCCCEEEec
Q 032685 85 LMGEILTVGADVGQVNAGKKVLFS 108 (136)
Q Consensus 85 ~~G~VVAVG~g~g~VkvGD~Vlf~ 108 (136)
..|+|+++|++...+++||+|+..
T Consensus 62 ~~G~v~~vG~~v~~~~~Gd~V~~~ 85 (325)
T cd08264 62 FAGVVEEVGDHVKGVKKGDRVVVY 85 (325)
T ss_pred eeEEEEEECCCCCCCCCCCEEEEC
Confidence 579999999987789999999864
No 49
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=67.98 E-value=5.8 Score=32.01 Aligned_cols=24 Identities=33% Similarity=0.635 Sum_probs=21.2
Q ss_pred ceeeEEEEEcCCCCcccCCCEEEe
Q 032685 84 YLMGEILTVGADVGQVNAGKKVLF 107 (136)
Q Consensus 84 ~~~G~VVAVG~g~g~VkvGD~Vlf 107 (136)
...|+|+++|++...+++||+|+.
T Consensus 60 e~~G~V~~~G~~v~~~~~Gd~V~~ 83 (337)
T cd08261 60 ELSGEVVEVGEGVAGLKVGDRVVV 83 (337)
T ss_pred ccEEEEEEeCCCCCCCCCCCEEEE
Confidence 367999999998778999999997
No 50
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=67.48 E-value=5.8 Score=32.03 Aligned_cols=25 Identities=24% Similarity=0.465 Sum_probs=21.9
Q ss_pred ceeeEEEEEcCCCCcccCCCEEEec
Q 032685 84 YLMGEILTVGADVGQVNAGKKVLFS 108 (136)
Q Consensus 84 ~~~G~VVAVG~g~g~VkvGD~Vlf~ 108 (136)
...|+|+++|++...+++||+|+..
T Consensus 59 ~~~G~V~~~g~~v~~~~~Gd~V~~~ 83 (343)
T cd08236 59 EFSGTVEEVGSGVDDLAVGDRVAVN 83 (343)
T ss_pred ceEEEEEEECCCCCcCCCCCEEEEc
Confidence 4689999999988889999999864
No 51
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=67.21 E-value=5.8 Score=31.87 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=21.1
Q ss_pred eeeEEEEEcCCCCcccCCCEEEec
Q 032685 85 LMGEILTVGADVGQVNAGKKVLFS 108 (136)
Q Consensus 85 ~~G~VVAVG~g~g~VkvGD~Vlf~ 108 (136)
..|+|+++|++...+++||+|+..
T Consensus 65 ~~G~V~~vG~~v~~~~~Gd~V~~~ 88 (340)
T cd05284 65 NAGWVEEVGSGVDGLKEGDPVVVH 88 (340)
T ss_pred eeEEEEEeCCCCCcCcCCCEEEEc
Confidence 579999999987789999999864
No 52
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=67.09 E-value=6.1 Score=31.77 Aligned_cols=24 Identities=33% Similarity=0.689 Sum_probs=21.2
Q ss_pred ceeeEEEEEcCCCCcccCCCEEEe
Q 032685 84 YLMGEILTVGADVGQVNAGKKVLF 107 (136)
Q Consensus 84 ~~~G~VVAVG~g~g~VkvGD~Vlf 107 (136)
...|+|+++|++...+++||+|+.
T Consensus 61 e~~G~V~~vG~~v~~~~~Gd~V~~ 84 (347)
T cd05278 61 EFVGEVVEVGSDVKRLKPGDRVSV 84 (347)
T ss_pred ceEEEEEEECCCccccCCCCEEEe
Confidence 367999999998778999999997
No 53
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=66.89 E-value=6 Score=31.88 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=20.9
Q ss_pred eeeEEEEEcCCCCcccCCCEEEe
Q 032685 85 LMGEILTVGADVGQVNAGKKVLF 107 (136)
Q Consensus 85 ~~G~VVAVG~g~g~VkvGD~Vlf 107 (136)
..|+|+++|++..++++||+|+.
T Consensus 61 ~~G~v~~vG~~v~~~~~Gd~V~~ 83 (339)
T cd08232 61 VSGVVEAVGPGVTGLAPGQRVAV 83 (339)
T ss_pred ceEEEEeeCCCCCcCCCCCEEEE
Confidence 57999999998888999999986
No 54
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=65.60 E-value=6.6 Score=32.98 Aligned_cols=24 Identities=29% Similarity=0.632 Sum_probs=21.3
Q ss_pred eeeEEEEEcCCCCcccCCCEEEec
Q 032685 85 LMGEILTVGADVGQVNAGKKVLFS 108 (136)
Q Consensus 85 ~~G~VVAVG~g~g~VkvGD~Vlf~ 108 (136)
..|+|+++|++...+++||+|+..
T Consensus 62 ~~G~V~~vG~~v~~~~~Gd~V~~~ 85 (386)
T cd08283 62 FMGVVEEVGPEVRNLKVGDRVVVP 85 (386)
T ss_pred ceEEEEEeCCCCCCCCCCCEEEEc
Confidence 579999999988889999999874
No 55
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=65.23 E-value=6.9 Score=32.47 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=21.2
Q ss_pred eeeEEEEEcCCCCcccCCCEEEec
Q 032685 85 LMGEILTVGADVGQVNAGKKVLFS 108 (136)
Q Consensus 85 ~~G~VVAVG~g~g~VkvGD~Vlf~ 108 (136)
..|+|++||++...+++||+|+..
T Consensus 61 ~~G~V~~vG~~v~~~~~Gd~Vv~~ 84 (365)
T cd05279 61 GAGIVESIGPGVTTLKPGDKVIPL 84 (365)
T ss_pred eeEEEEEeCCCcccCCCCCEEEEc
Confidence 579999999987789999999864
No 56
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=65.02 E-value=7 Score=31.77 Aligned_cols=23 Identities=26% Similarity=0.567 Sum_probs=20.7
Q ss_pred eeeEEEEEcCCCCcccCCCEEEe
Q 032685 85 LMGEILTVGADVGQVNAGKKVLF 107 (136)
Q Consensus 85 ~~G~VVAVG~g~g~VkvGD~Vlf 107 (136)
..|+|+++|++...+++||+|++
T Consensus 61 ~~G~V~~vG~~v~~~~~Gd~V~~ 83 (337)
T cd05283 61 IVGIVVAVGSKVTKFKVGDRVGV 83 (337)
T ss_pred eeeEEEEECCCCcccCCCCEEEE
Confidence 57999999998888999999985
No 57
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=64.93 E-value=7.2 Score=31.43 Aligned_cols=25 Identities=24% Similarity=0.258 Sum_probs=21.1
Q ss_pred ceeeEEEEEcCCCCc-ccCCCEEEec
Q 032685 84 YLMGEILTVGADVGQ-VNAGKKVLFS 108 (136)
Q Consensus 84 ~~~G~VVAVG~g~g~-VkvGD~Vlf~ 108 (136)
...|+|+++|++... +++||+|+..
T Consensus 67 e~~G~V~~vG~~v~~~~~vGd~V~~~ 92 (324)
T cd08291 67 EGSGTVVAAGGGPLAQSLIGKRVAFL 92 (324)
T ss_pred ceEEEEEEECCCccccCCCCCEEEec
Confidence 367999999998764 9999999864
No 58
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=64.47 E-value=7 Score=33.01 Aligned_cols=24 Identities=29% Similarity=0.594 Sum_probs=21.2
Q ss_pred eeeEEEEEcCCCCcccCCCEEEecC
Q 032685 85 LMGEILTVGADVGQVNAGKKVLFSD 109 (136)
Q Consensus 85 ~~G~VVAVG~g~g~VkvGD~Vlf~~ 109 (136)
..|+|+++| ....+|+||+|....
T Consensus 63 ~~G~V~evG-~~~~~~~GdrVvv~~ 86 (350)
T COG1063 63 FVGEVVEVG-VVRGFKVGDRVVVEP 86 (350)
T ss_pred ceEEEEEec-cccCCCCCCEEEECC
Confidence 579999999 667899999999975
No 59
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=63.86 E-value=13 Score=28.90 Aligned_cols=25 Identities=24% Similarity=0.464 Sum_probs=21.6
Q ss_pred ceeeEEEEEcCCCCcccCCCEEEec
Q 032685 84 YLMGEILTVGADVGQVNAGKKVLFS 108 (136)
Q Consensus 84 ~~~G~VVAVG~g~g~VkvGD~Vlf~ 108 (136)
...|.|+++|++...+++||+|+..
T Consensus 27 e~~G~V~~vG~~v~~~~~Gd~V~~~ 51 (277)
T cd08255 27 SSVGRVVEVGSGVTGFKPGDRVFCF 51 (277)
T ss_pred ceeEEEEEeCCCCCCCCCCCEEEec
Confidence 4679999999877779999999985
No 60
>PLN02702 L-idonate 5-dehydrogenase
Probab=63.74 E-value=7.5 Score=32.02 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=20.7
Q ss_pred eeeEEEEEcCCCCcccCCCEEEe
Q 032685 85 LMGEILTVGADVGQVNAGKKVLF 107 (136)
Q Consensus 85 ~~G~VVAVG~g~g~VkvGD~Vlf 107 (136)
..|+|+++|++...+++||+|+.
T Consensus 81 ~~G~V~~vG~~v~~~~~Gd~V~~ 103 (364)
T PLN02702 81 CAGIIEEVGSEVKHLVVGDRVAL 103 (364)
T ss_pred eeEEEEEECCCCCCCCCCCEEEE
Confidence 57999999998778999999986
No 61
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=63.70 E-value=7.1 Score=31.44 Aligned_cols=24 Identities=29% Similarity=0.685 Sum_probs=21.1
Q ss_pred eeeEEEEEcCCCCcccCCCEEEec
Q 032685 85 LMGEILTVGADVGQVNAGKKVLFS 108 (136)
Q Consensus 85 ~~G~VVAVG~g~g~VkvGD~Vlf~ 108 (136)
..|.|+++|++...+++||+|+..
T Consensus 61 ~~G~V~~vG~~v~~~~~Gd~V~~~ 84 (344)
T cd08284 61 FVGEVVEVGPEVRTLKVGDRVVSP 84 (344)
T ss_pred eEEEEEeeCCCccccCCCCEEEEc
Confidence 579999999987789999999863
No 62
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=63.70 E-value=7.4 Score=31.31 Aligned_cols=25 Identities=32% Similarity=0.585 Sum_probs=21.5
Q ss_pred ceeeEEEEEcCCCCcccCCCEEEec
Q 032685 84 YLMGEILTVGADVGQVNAGKKVLFS 108 (136)
Q Consensus 84 ~~~G~VVAVG~g~g~VkvGD~Vlf~ 108 (136)
...|+|+++|++...+++||+|+..
T Consensus 60 ~~~G~V~~~G~~v~~~~~Gd~V~~~ 84 (343)
T cd08235 60 EIAGEIVEVGDGVTGFKVGDRVFVA 84 (343)
T ss_pred ceEEEEEeeCCCCCCCCCCCEEEEc
Confidence 4679999999887789999999963
No 63
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=63.49 E-value=7.5 Score=31.33 Aligned_cols=24 Identities=21% Similarity=0.447 Sum_probs=20.9
Q ss_pred eeeEEEEEcCCCCc-ccCCCEEEec
Q 032685 85 LMGEILTVGADVGQ-VNAGKKVLFS 108 (136)
Q Consensus 85 ~~G~VVAVG~g~g~-VkvGD~Vlf~ 108 (136)
..|+|+++|++... +++||+|+.-
T Consensus 71 ~~G~V~~vG~~v~~~~~~Gd~V~~~ 95 (341)
T cd08262 71 FCGEVVDYGPGTERKLKVGTRVTSL 95 (341)
T ss_pred eeEEEEEeCCCCcCCCCCCCEEEec
Confidence 57999999998765 9999999975
No 64
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=63.33 E-value=8.5 Score=31.16 Aligned_cols=24 Identities=29% Similarity=0.567 Sum_probs=21.4
Q ss_pred eeeEEEEEcCCCCcccCCCEEEec
Q 032685 85 LMGEILTVGADVGQVNAGKKVLFS 108 (136)
Q Consensus 85 ~~G~VVAVG~g~g~VkvGD~Vlf~ 108 (136)
..|+|+++|++...+++||+|+..
T Consensus 65 ~~G~V~~vG~~v~~~~~Gd~V~~~ 88 (341)
T PRK05396 65 FVGEVVEVGSEVTGFKVGDRVSGE 88 (341)
T ss_pred eEEEEEEeCCCCCcCCCCCEEEEC
Confidence 579999999988889999999864
No 65
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=63.19 E-value=7.9 Score=32.24 Aligned_cols=23 Identities=35% Similarity=0.651 Sum_probs=20.8
Q ss_pred eeeEEEEEcCCCCcccCCCEEEe
Q 032685 85 LMGEILTVGADVGQVNAGKKVLF 107 (136)
Q Consensus 85 ~~G~VVAVG~g~g~VkvGD~Vlf 107 (136)
..|+|+++|++...+++||+|+.
T Consensus 61 ~~G~V~~vG~~v~~~~~Gd~V~~ 83 (375)
T cd08282 61 AMGEVEEVGSAVESLKVGDRVVV 83 (375)
T ss_pred cEEEEEEeCCCCCcCCCCCEEEE
Confidence 57999999998778999999986
No 66
>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=62.81 E-value=8.2 Score=30.00 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=21.4
Q ss_pred ceeeEEEEEcCCCCcccCCCEEEec
Q 032685 84 YLMGEILTVGADVGQVNAGKKVLFS 108 (136)
Q Consensus 84 ~~~G~VVAVG~g~g~VkvGD~Vlf~ 108 (136)
...|.|+++|++...+++||+|+.-
T Consensus 64 e~~G~v~~~G~~~~~~~~Gd~V~~~ 88 (328)
T cd08268 64 EAAGVVEAVGAGVTGFAVGDRVSVI 88 (328)
T ss_pred ceEEEEEeeCCCCCcCCCCCEEEec
Confidence 3679999999987789999999864
No 67
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=62.80 E-value=8.4 Score=31.08 Aligned_cols=24 Identities=33% Similarity=0.558 Sum_probs=21.5
Q ss_pred eeeEEEEEcCCCCcccCCCEEEec
Q 032685 85 LMGEILTVGADVGQVNAGKKVLFS 108 (136)
Q Consensus 85 ~~G~VVAVG~g~g~VkvGD~Vlf~ 108 (136)
..|+|+++|++...+++||+|+..
T Consensus 63 ~~G~V~~vG~~v~~~~~Gd~V~~~ 86 (306)
T cd08258 63 FSGTIVEVGPDVEGWKVGDRVVSE 86 (306)
T ss_pred eEEEEEEECCCcCcCCCCCEEEEc
Confidence 579999999987789999999874
No 68
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=62.70 E-value=8.8 Score=30.34 Aligned_cols=25 Identities=28% Similarity=0.464 Sum_probs=21.4
Q ss_pred ceeeEEEEEcCCCCcccCCCEEEec
Q 032685 84 YLMGEILTVGADVGQVNAGKKVLFS 108 (136)
Q Consensus 84 ~~~G~VVAVG~g~g~VkvGD~Vlf~ 108 (136)
...|.|+++|.+...+++||+|+--
T Consensus 65 e~~G~v~~vG~~v~~~~~Gd~V~~~ 89 (334)
T PTZ00354 65 EVAGYVEDVGSDVKRFKEGDRVMAL 89 (334)
T ss_pred eeEEEEEEeCCCCCCCCCCCEEEEe
Confidence 3679999999987789999999863
No 69
>PF08140 Cuticle_1: Crustacean cuticle protein repeat; InterPro: IPR012539 This family consists of the cuticle proteins from the Cancer pagurus (Rock crab) and the Homarus americanus (American lobster). These proteins are isolated from the calcified regions of the crustacean and they contain two copies of an 18 residue sequence motif, which thus far has been found only in crustacean calcified exoskeletons [].; GO: 0042302 structural constituent of cuticle
Probab=62.42 E-value=10 Score=23.53 Aligned_cols=39 Identities=23% Similarity=0.340 Sum_probs=23.5
Q ss_pred cceEEeccCccccccceeeEEEEEcCCCCcccCCCEEEe
Q 032685 69 AGGILLPKAAVKFERYLMGEILTVGADVGQVNAGKKVLF 107 (136)
Q Consensus 69 ~gGIiLP~sa~~~ek~~~G~VVAVG~g~g~VkvGD~Vlf 107 (136)
.|||+.|+.....=..-...|+.+||.---.+-|+.|.|
T Consensus 2 ~SGii~~dG~~~q~~~~~a~ivl~GpSG~v~sdG~nvQf 40 (40)
T PF08140_consen 2 PSGIITPDGTNVQFPHGVANIVLIGPSGAVLSDGKNVQF 40 (40)
T ss_pred CCceECCCCCEEECCcccceEEEECCceEEeeCCcEecC
Confidence 489999988642111222379999984334555665543
No 70
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=62.33 E-value=8.4 Score=31.40 Aligned_cols=25 Identities=24% Similarity=0.498 Sum_probs=21.6
Q ss_pred ceeeEEEEEcCCCCcccCCCEEEec
Q 032685 84 YLMGEILTVGADVGQVNAGKKVLFS 108 (136)
Q Consensus 84 ~~~G~VVAVG~g~g~VkvGD~Vlf~ 108 (136)
...|+|+++|++...+++||+|+..
T Consensus 60 e~~G~V~~vG~~v~~~~~Gd~V~~~ 84 (351)
T cd08285 60 EAVGVVEEVGSEVKDFKPGDRVIVP 84 (351)
T ss_pred ceEEEEEEecCCcCccCCCCEEEEc
Confidence 3679999999987779999999974
No 71
>COG4079 Uncharacterized protein conserved in archaea [Function unknown]
Probab=62.17 E-value=12 Score=31.88 Aligned_cols=30 Identities=20% Similarity=0.391 Sum_probs=23.4
Q ss_pred CCcccCCCEEEecC----CCceEEEeCCCeeEEEEe
Q 032685 96 VGQVNAGKKVLFSD----ISAYEVDLGADERHCFVK 127 (136)
Q Consensus 96 ~g~VkvGD~Vlf~~----y~G~ev~~~~ge~y~ivr 127 (136)
+|++++||+|.+.+ -.|.+++.. ..|+|+|
T Consensus 259 ~g~~~pGd~vvv~dg~mki~G~d~kV~--t~yiIcr 292 (293)
T COG4079 259 NGEVEPGDRVVVKDGVMKIDGKDLKVI--TGYIICR 292 (293)
T ss_pred CCccCCCCEEEEecCceEeccccceee--eeeEEec
Confidence 36799999999986 347777775 6788876
No 72
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=61.97 E-value=9.1 Score=30.55 Aligned_cols=24 Identities=25% Similarity=0.609 Sum_probs=21.2
Q ss_pred eeeEEEEEcCCCCcccCCCEEEec
Q 032685 85 LMGEILTVGADVGQVNAGKKVLFS 108 (136)
Q Consensus 85 ~~G~VVAVG~g~g~VkvGD~Vlf~ 108 (136)
..|.|+.+|++...+++||+|++.
T Consensus 65 ~~G~v~~vG~~v~~~~~Gd~V~~~ 88 (327)
T PRK10754 65 AAGVVSKVGSGVKHIKVGDRVVYA 88 (327)
T ss_pred eEEEEEEeCCCCCCCCCCCEEEEC
Confidence 579999999988789999999864
No 73
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=61.93 E-value=8.7 Score=31.07 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=21.0
Q ss_pred eeeEEEEEcCCCCcccCCCEEEec
Q 032685 85 LMGEILTVGADVGQVNAGKKVLFS 108 (136)
Q Consensus 85 ~~G~VVAVG~g~g~VkvGD~Vlf~ 108 (136)
..|+|+++|++...+++||+|+..
T Consensus 62 ~~G~V~~~G~~v~~~~~Gd~V~~~ 85 (345)
T cd08286 62 GVGVVEEVGSAVTNFKVGDRVLIS 85 (345)
T ss_pred ceEEEEEeccCccccCCCCEEEEC
Confidence 579999999987779999999874
No 74
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=61.13 E-value=7.1 Score=34.38 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=20.9
Q ss_pred eeeEEEEEcCCCCcccCCCEEEecC
Q 032685 85 LMGEILTVGADVGQVNAGKKVLFSD 109 (136)
Q Consensus 85 ~~G~VVAVG~g~g~VkvGD~Vlf~~ 109 (136)
..|+|+.||+.+..+|+||+|=+.-
T Consensus 73 iaG~VvkvGs~V~~~kiGD~vGVg~ 97 (360)
T KOG0023|consen 73 IAGVVVKVGSNVTGFKIGDRVGVGW 97 (360)
T ss_pred eeEEEEEECCCcccccccCeeeeeE
Confidence 5799999999888889999886543
No 75
>PF10844 DUF2577: Protein of unknown function (DUF2577); InterPro: IPR022555 This family of proteins has no known function
Probab=60.98 E-value=9.8 Score=27.05 Aligned_cols=23 Identities=17% Similarity=0.348 Sum_probs=17.0
Q ss_pred cccCCCEEEecCCCceEEEeCCCeeEEEEe
Q 032685 98 QVNAGKKVLFSDISAYEVDLGADERHCFVK 127 (136)
Q Consensus 98 ~VkvGD~Vlf~~y~G~ev~~~~ge~y~ivr 127 (136)
.+|+||+|+.-. .++|+.|+++.
T Consensus 76 ~Lk~GD~V~ll~-------~~~gQ~yiVlD 98 (100)
T PF10844_consen 76 GLKVGDKVLLLR-------VQGGQKYIVLD 98 (100)
T ss_pred CCcCCCEEEEEE-------ecCCCEEEEEE
Confidence 699999999866 23367787663
No 76
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=60.91 E-value=9.5 Score=31.00 Aligned_cols=24 Identities=25% Similarity=0.513 Sum_probs=21.1
Q ss_pred ceeeEEEEEcCCCCcccCCCEEEe
Q 032685 84 YLMGEILTVGADVGQVNAGKKVLF 107 (136)
Q Consensus 84 ~~~G~VVAVG~g~g~VkvGD~Vlf 107 (136)
...|+|+++|++...+++||+|+.
T Consensus 61 e~~G~V~~vG~~v~~~~~Gd~V~~ 84 (343)
T cd05285 61 ESAGTVVAVGSGVTHLKVGDRVAI 84 (343)
T ss_pred ceeEEEEeeCCCCCCCCCCCEEEE
Confidence 468999999988778999999985
No 77
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=60.85 E-value=9.4 Score=30.16 Aligned_cols=25 Identities=24% Similarity=0.533 Sum_probs=21.4
Q ss_pred ceeeEEEEEcCCCCcccCCCEEEec
Q 032685 84 YLMGEILTVGADVGQVNAGKKVLFS 108 (136)
Q Consensus 84 ~~~G~VVAVG~g~g~VkvGD~Vlf~ 108 (136)
...|+|+.+|++...+++||+|+.-
T Consensus 61 e~~G~v~~~G~~v~~~~~Gd~V~~~ 85 (332)
T cd08259 61 EIVGTVEEVGEGVERFKPGDRVILY 85 (332)
T ss_pred cceEEEEEECCCCccCCCCCEEEEC
Confidence 3579999999987789999999864
No 78
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=60.84 E-value=8.6 Score=31.73 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=21.2
Q ss_pred ceeeEEEEEcCCCCcccCCCEEEe
Q 032685 84 YLMGEILTVGADVGQVNAGKKVLF 107 (136)
Q Consensus 84 ~~~G~VVAVG~g~g~VkvGD~Vlf 107 (136)
...|+|+++|++...+++||+|+.
T Consensus 60 e~~G~V~~vG~~v~~~~~Gd~V~~ 83 (363)
T cd08279 60 EGAGVVEEVGPGVTGVKPGDHVVL 83 (363)
T ss_pred cceEEEEEeCCCccccCCCCEEEE
Confidence 357999999998778999999997
No 79
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=60.78 E-value=9.7 Score=30.64 Aligned_cols=24 Identities=29% Similarity=0.675 Sum_probs=21.2
Q ss_pred eeeEEEEEcCCCCcccCCCEEEec
Q 032685 85 LMGEILTVGADVGQVNAGKKVLFS 108 (136)
Q Consensus 85 ~~G~VVAVG~g~g~VkvGD~Vlf~ 108 (136)
..|.|++||++...+++||+|+..
T Consensus 85 ~~G~V~~vG~~v~~~~~Gd~V~~~ 108 (350)
T cd08274 85 IVGRVVAVGEGVDTARIGERVLVD 108 (350)
T ss_pred ceEEEEEeCCCCCCCCCCCEEEEe
Confidence 579999999987789999999873
No 80
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=60.42 E-value=9.4 Score=31.24 Aligned_cols=24 Identities=25% Similarity=0.573 Sum_probs=20.2
Q ss_pred eeeEEEEEcCCCC------cccCCCEEEec
Q 032685 85 LMGEILTVGADVG------QVNAGKKVLFS 108 (136)
Q Consensus 85 ~~G~VVAVG~g~g------~VkvGD~Vlf~ 108 (136)
..|+|++||++.. .+++||+|+..
T Consensus 62 ~~G~V~~vG~~v~~~~~~~~~~~Gd~V~~~ 91 (361)
T cd08231 62 GVGRVVALGGGVTTDVAGEPLKVGDRVTWS 91 (361)
T ss_pred CceEEEEeCCCccccccCCccCCCCEEEEc
Confidence 5799999998754 39999999875
No 81
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=59.74 E-value=9.6 Score=30.64 Aligned_cols=27 Identities=26% Similarity=0.339 Sum_probs=22.7
Q ss_pred ceeeEEEEEcCCCCcccCCCEEEecCC
Q 032685 84 YLMGEILTVGADVGQVNAGKKVLFSDI 110 (136)
Q Consensus 84 ~~~G~VVAVG~g~g~VkvGD~Vlf~~y 110 (136)
...|.|+++|++...+++||+|+...+
T Consensus 70 e~~G~V~~vG~~v~~~~~Gd~V~~~~~ 96 (341)
T cd08290 70 EGVGEVVKVGSGVKSLKPGDWVIPLRP 96 (341)
T ss_pred ceEEEEEEeCCCCCCCCCCCEEEecCC
Confidence 367999999998778999999997643
No 82
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=59.14 E-value=11 Score=31.56 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=21.4
Q ss_pred eeeEEEEEcCCCCcccCCCEEEec
Q 032685 85 LMGEILTVGADVGQVNAGKKVLFS 108 (136)
Q Consensus 85 ~~G~VVAVG~g~g~VkvGD~Vlf~ 108 (136)
..|+|+++|++...+++||+|+..
T Consensus 89 ~~G~V~~vG~~v~~~~~Gd~V~~~ 112 (393)
T cd08246 89 ASGIVWAVGEGVKNWKVGDEVVVH 112 (393)
T ss_pred eEEEEEEeCCCCCcCCCCCEEEEe
Confidence 579999999988789999999874
No 83
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=58.34 E-value=26 Score=28.20 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=20.6
Q ss_pred eeeEEEEEcCCCCcccCCCEEEe
Q 032685 85 LMGEILTVGADVGQVNAGKKVLF 107 (136)
Q Consensus 85 ~~G~VVAVG~g~g~VkvGD~Vlf 107 (136)
..|+|+++|++....++||+|+.
T Consensus 64 ~~G~V~~vG~~~~~~~~Gd~V~~ 86 (341)
T cd08297 64 GAGVVVAVGPGVSGLKVGDRVGV 86 (341)
T ss_pred cceEEEEeCCCCCCCCCCCEEEE
Confidence 57999999998778999999985
No 84
>smart00829 PKS_ER Enoylreductase. Enoylreductase in Polyketide synthases.
Probab=58.21 E-value=11 Score=28.58 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=21.7
Q ss_pred eeeEEEEEcCCCCcccCCCEEEecC
Q 032685 85 LMGEILTVGADVGQVNAGKKVLFSD 109 (136)
Q Consensus 85 ~~G~VVAVG~g~g~VkvGD~Vlf~~ 109 (136)
..|+|+++|++...+++||+|+...
T Consensus 31 ~~G~v~~~G~~~~~~~~Gd~V~~~~ 55 (288)
T smart00829 31 CAGVVTRVGPGVTGLAVGDRVMGLA 55 (288)
T ss_pred eEEEEEeeCCCCcCCCCCCEEEEEc
Confidence 5799999999877899999999754
No 85
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=58.17 E-value=12 Score=29.79 Aligned_cols=23 Identities=30% Similarity=0.609 Sum_probs=20.5
Q ss_pred eeeEEEEEcCCCCcccCCCEEEe
Q 032685 85 LMGEILTVGADVGQVNAGKKVLF 107 (136)
Q Consensus 85 ~~G~VVAVG~g~g~VkvGD~Vlf 107 (136)
..|+|+++|++...+++||+|+.
T Consensus 64 ~~G~v~~~G~~v~~~~~Gd~V~~ 86 (338)
T cd08254 64 IAGTVVEVGAGVTNFKVGDRVAV 86 (338)
T ss_pred ccEEEEEECCCCccCCCCCEEEE
Confidence 57999999988778999999986
No 86
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=58.11 E-value=11 Score=30.72 Aligned_cols=24 Identities=42% Similarity=0.789 Sum_probs=20.9
Q ss_pred eeeEEEEEcCCCCcccCCCEEEec
Q 032685 85 LMGEILTVGADVGQVNAGKKVLFS 108 (136)
Q Consensus 85 ~~G~VVAVG~g~g~VkvGD~Vlf~ 108 (136)
..|+|+++|++...+++||+|+.-
T Consensus 74 ~~G~V~~vG~~v~~~~~Gd~V~~~ 97 (350)
T cd08240 74 IVGEVVAVGPDAADVKVGDKVLVY 97 (350)
T ss_pred eeEEEEeeCCCCCCCCCCCEEEEC
Confidence 579999999987789999999854
No 87
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=57.82 E-value=12 Score=29.82 Aligned_cols=25 Identities=32% Similarity=0.521 Sum_probs=21.1
Q ss_pred ceeeEEEEEcCCCCcccCCCEEEec
Q 032685 84 YLMGEILTVGADVGQVNAGKKVLFS 108 (136)
Q Consensus 84 ~~~G~VVAVG~g~g~VkvGD~Vlf~ 108 (136)
...|+|+++|.+...+++||+|++.
T Consensus 60 e~~G~v~~~g~~~~~~~~Gd~V~~~ 84 (330)
T cd08245 60 EIVGEVVEVGAGVEGRKVGDRVGVG 84 (330)
T ss_pred cceEEEEEECCCCcccccCCEEEEc
Confidence 3579999999877789999999853
No 88
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=57.50 E-value=11 Score=30.18 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=21.0
Q ss_pred ceeeEEEEEcCCCCcccCCCEEEe
Q 032685 84 YLMGEILTVGADVGQVNAGKKVLF 107 (136)
Q Consensus 84 ~~~G~VVAVG~g~g~VkvGD~Vlf 107 (136)
...|+|+++|++...+++||+|+.
T Consensus 60 e~~G~V~~~G~~v~~~~~Gd~V~~ 83 (338)
T PRK09422 60 EGIGIVKEVGPGVTSLKVGDRVSI 83 (338)
T ss_pred ccceEEEEECCCCccCCCCCEEEE
Confidence 367999999998778999999985
No 89
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=57.32 E-value=11 Score=29.48 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=21.1
Q ss_pred eeeEEEEEcCCCCcccCCCEEEec
Q 032685 85 LMGEILTVGADVGQVNAGKKVLFS 108 (136)
Q Consensus 85 ~~G~VVAVG~g~g~VkvGD~Vlf~ 108 (136)
..|+|+.+|.+...+++||+|+..
T Consensus 65 ~~G~v~~~G~~~~~~~~Gd~V~~~ 88 (342)
T cd08266 65 GAGVVEAVGPGVTNVKPGQRVVIY 88 (342)
T ss_pred eEEEEEEeCCCCCCCCCCCEEEEc
Confidence 579999999877779999999875
No 90
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=57.12 E-value=13 Score=29.76 Aligned_cols=24 Identities=25% Similarity=0.484 Sum_probs=21.1
Q ss_pred ceeeEEEEEcCCCCcccCCCEEEe
Q 032685 84 YLMGEILTVGADVGQVNAGKKVLF 107 (136)
Q Consensus 84 ~~~G~VVAVG~g~g~VkvGD~Vlf 107 (136)
...|.|+++|++...+++||+|+.
T Consensus 59 ~~~G~v~~vG~~v~~~~~Gd~V~~ 82 (334)
T cd08234 59 EFAGVVVAVGSKVTGFKVGDRVAV 82 (334)
T ss_pred ceEEEEEEeCCCCCCCCCCCEEEE
Confidence 468999999998778999999986
No 91
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=56.84 E-value=13 Score=29.05 Aligned_cols=25 Identities=20% Similarity=0.118 Sum_probs=21.4
Q ss_pred ceeeEEEEEcCCCCcccCCCEEEec
Q 032685 84 YLMGEILTVGADVGQVNAGKKVLFS 108 (136)
Q Consensus 84 ~~~G~VVAVG~g~g~VkvGD~Vlf~ 108 (136)
...|.|+.+|++...+++||+|+.-
T Consensus 58 e~~G~v~~~G~~v~~~~~Gd~V~~~ 82 (305)
T cd08270 58 DAAGVVERAAADGSGPAVGARVVGL 82 (305)
T ss_pred eeEEEEEEeCCCCCCCCCCCEEEEe
Confidence 3679999999887778999999864
No 92
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=56.70 E-value=12 Score=31.42 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=20.6
Q ss_pred eeeEEEEEcCCCCcccCCCEEEe
Q 032685 85 LMGEILTVGADVGQVNAGKKVLF 107 (136)
Q Consensus 85 ~~G~VVAVG~g~g~VkvGD~Vlf 107 (136)
..|+|+++|++...+++||+|+.
T Consensus 95 ~~G~V~~vG~~v~~~~~Gd~V~~ 117 (384)
T cd08265 95 FSGVVEKTGKNVKNFEKGDPVTA 117 (384)
T ss_pred eEEEEEEECCCCCCCCCCCEEEE
Confidence 57999999998777999999996
No 93
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=56.16 E-value=14 Score=28.48 Aligned_cols=26 Identities=23% Similarity=0.371 Sum_probs=22.1
Q ss_pred ceeeEEEEEcCCCCcccCCCEEEecC
Q 032685 84 YLMGEILTVGADVGQVNAGKKVLFSD 109 (136)
Q Consensus 84 ~~~G~VVAVG~g~g~VkvGD~Vlf~~ 109 (136)
...|.|+.+|++...+++||+|+.-.
T Consensus 61 e~~G~v~~~g~~~~~~~~G~~V~~~~ 86 (320)
T cd05286 61 EGAGVVEAVGPGVTGFKVGDRVAYAG 86 (320)
T ss_pred ceeEEEEEECCCCCCCCCCCEEEEec
Confidence 36799999998877899999999753
No 94
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=56.08 E-value=12 Score=30.49 Aligned_cols=23 Identities=22% Similarity=0.576 Sum_probs=20.5
Q ss_pred eeeEEEEEcCCCC--cccCCCEEEe
Q 032685 85 LMGEILTVGADVG--QVNAGKKVLF 107 (136)
Q Consensus 85 ~~G~VVAVG~g~g--~VkvGD~Vlf 107 (136)
..|+|+++|++.. .+++||+|+.
T Consensus 70 ~~G~v~~vG~~v~~~~~~~Gd~V~~ 94 (350)
T cd08256 70 FVGRVVELGEGAEERGVKVGDRVIS 94 (350)
T ss_pred eeEEEEEeCCCcccCCCCCCCEEEE
Confidence 5799999999865 8999999986
No 95
>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR). Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts
Probab=55.56 E-value=13 Score=28.80 Aligned_cols=25 Identities=24% Similarity=0.454 Sum_probs=21.6
Q ss_pred eeeEEEEEcCCCCcccCCCEEEecC
Q 032685 85 LMGEILTVGADVGQVNAGKKVLFSD 109 (136)
Q Consensus 85 ~~G~VVAVG~g~g~VkvGD~Vlf~~ 109 (136)
..|.|+++|++...+++||+|+...
T Consensus 65 ~~G~v~~~g~~~~~~~~Gd~v~~~~ 89 (325)
T cd08253 65 GAGVVEAVGEGVDGLKVGDRVWLTN 89 (325)
T ss_pred eEEEEEeeCCCCCCCCCCCEEEEec
Confidence 5799999998877899999998753
No 96
>cd05195 enoyl_red enoyl reductase of polyketide synthase. Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase
Probab=55.43 E-value=13 Score=27.95 Aligned_cols=26 Identities=23% Similarity=0.303 Sum_probs=22.0
Q ss_pred ceeeEEEEEcCCCCcccCCCEEEecC
Q 032685 84 YLMGEILTVGADVGQVNAGKKVLFSD 109 (136)
Q Consensus 84 ~~~G~VVAVG~g~g~VkvGD~Vlf~~ 109 (136)
...|.|+++|++...+++||+|+...
T Consensus 34 e~~G~v~~~g~~~~~~~~Gd~V~~~~ 59 (293)
T cd05195 34 ECSGIVTRVGSGVTGLKVGDRVMGLA 59 (293)
T ss_pred eeeEEEEeecCCccCCCCCCEEEEEe
Confidence 36799999998877899999998753
No 97
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=54.14 E-value=14 Score=31.07 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=21.2
Q ss_pred eeeEEEEEcCCCCcccCCCEEEec
Q 032685 85 LMGEILTVGADVGQVNAGKKVLFS 108 (136)
Q Consensus 85 ~~G~VVAVG~g~g~VkvGD~Vlf~ 108 (136)
..|+|+++|++...+++||+|+..
T Consensus 85 ~~G~V~~vG~~v~~~~~Gd~V~~~ 108 (398)
T TIGR01751 85 ASGVVWRVGPGVTRWKVGDEVVAS 108 (398)
T ss_pred eEEEEEEeCCCCCCCCCCCEEEEc
Confidence 579999999987789999999874
No 98
>cd08251 polyketide_synthase polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a
Probab=54.01 E-value=15 Score=28.27 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=21.2
Q ss_pred ceeeEEEEEcCCCCcccCCCEEEec
Q 032685 84 YLMGEILTVGADVGQVNAGKKVLFS 108 (136)
Q Consensus 84 ~~~G~VVAVG~g~g~VkvGD~Vlf~ 108 (136)
...|.|+++|++...+++||+|+..
T Consensus 44 e~~G~v~~~G~~v~~~~~Gd~V~~~ 68 (303)
T cd08251 44 EASGVVRAVGPHVTRLAVGDEVIAG 68 (303)
T ss_pred eeeEEEEEECCCCCCCCCCCEEEEe
Confidence 3579999999887779999999864
No 99
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=53.75 E-value=14 Score=30.89 Aligned_cols=24 Identities=33% Similarity=0.436 Sum_probs=21.2
Q ss_pred eeeEEEEEcCCCCcccCCCEEEec
Q 032685 85 LMGEILTVGADVGQVNAGKKVLFS 108 (136)
Q Consensus 85 ~~G~VVAVG~g~g~VkvGD~Vlf~ 108 (136)
..|+|+++|++...+++||+|...
T Consensus 68 ~~G~V~~vG~~v~~~~~Gd~V~~~ 91 (373)
T cd08299 68 AAGIVESVGEGVTTVKPGDKVIPL 91 (373)
T ss_pred ceEEEEEeCCCCccCCCCCEEEEC
Confidence 579999999987789999999864
No 100
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=53.69 E-value=14 Score=29.06 Aligned_cols=26 Identities=23% Similarity=0.341 Sum_probs=21.9
Q ss_pred ceeeEEEEEcCCCCcccCCCEEEecC
Q 032685 84 YLMGEILTVGADVGQVNAGKKVLFSD 109 (136)
Q Consensus 84 ~~~G~VVAVG~g~g~VkvGD~Vlf~~ 109 (136)
...|.|+++|++...+++||+|+..-
T Consensus 66 e~~G~v~~~G~~v~~~~~Gd~V~~~~ 91 (324)
T cd08244 66 EVAGVVDAVGPGVDPAWLGRRVVAHT 91 (324)
T ss_pred ceEEEEEEeCCCCCCCCCCCEEEEcc
Confidence 36799999998877789999998753
No 101
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=53.44 E-value=15 Score=29.71 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=20.6
Q ss_pred eeeEEEEEcCCCCcccCCCEEEe
Q 032685 85 LMGEILTVGADVGQVNAGKKVLF 107 (136)
Q Consensus 85 ~~G~VVAVG~g~g~VkvGD~Vlf 107 (136)
..|.|+++|++...+++||+|+.
T Consensus 62 ~~G~v~~vG~~v~~~~~Gd~V~~ 84 (333)
T cd08296 62 VVGRIDAVGEGVSRWKVGDRVGV 84 (333)
T ss_pred eeEEEEEECCCCccCCCCCEEEe
Confidence 57999999998778999999986
No 102
>PF01455 HupF_HypC: HupF/HypC family; InterPro: IPR001109 The large subunit of [NiFe]-hydrogenase, as well as other nickel metalloenzymes, is synthesised as a precursor devoid of the metalloenzyme active site. This precursor then undergoes a complex post-translational maturation process that requires a number of accessory proteins. The hydrogenase expression/formation proteins (HupF/HypC) form a family of small proteins that are hydrogenase precursor-specific chaperones required for this maturation process []. They are believed to keep the hydrogenase precursor in a conformation accessible for metal incorporation [, ].; PDB: 3D3R_A 2Z1C_C 2OT2_A.
Probab=53.44 E-value=19 Score=24.18 Aligned_cols=12 Identities=33% Similarity=0.479 Sum_probs=8.4
Q ss_pred cccCCCEEEecC
Q 032685 98 QVNAGKKVLFSD 109 (136)
Q Consensus 98 ~VkvGD~Vlf~~ 109 (136)
++++||.|++.-
T Consensus 37 ~v~~Gd~VLVHa 48 (68)
T PF01455_consen 37 DVKVGDYVLVHA 48 (68)
T ss_dssp SB-TT-EEEEET
T ss_pred CCCCCCEEEEec
Confidence 699999999864
No 103
>cd08247 AST1_like AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast. This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-termi
Probab=53.41 E-value=13 Score=30.19 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=21.2
Q ss_pred ceeeEEEEEcCCCC-cccCCCEEEec
Q 032685 84 YLMGEILTVGADVG-QVNAGKKVLFS 108 (136)
Q Consensus 84 ~~~G~VVAVG~g~g-~VkvGD~Vlf~ 108 (136)
...|+|+++|++.. .+++||+|+-.
T Consensus 65 e~~G~V~~vG~~v~~~~~~Gd~V~~~ 90 (352)
T cd08247 65 DYSGVIVKVGSNVASEWKVGDEVCGI 90 (352)
T ss_pred eeEEEEEEeCcccccCCCCCCEEEEe
Confidence 36799999999876 79999999854
No 104
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=53.17 E-value=14 Score=30.70 Aligned_cols=24 Identities=17% Similarity=0.041 Sum_probs=20.4
Q ss_pred ceeeEEEEEcCCCCcccCCCEEEe
Q 032685 84 YLMGEILTVGADVGQVNAGKKVLF 107 (136)
Q Consensus 84 ~~~G~VVAVG~g~g~VkvGD~Vlf 107 (136)
...|.|.+||++...+++||+|..
T Consensus 81 ~~~G~v~~vg~~v~~~~~Gd~V~~ 104 (348)
T PLN03154 81 EGFGVSKVVDSDDPNFKPGDLISG 104 (348)
T ss_pred EeeEEEEEEecCCCCCCCCCEEEe
Confidence 346899999998878999999974
No 105
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=53.12 E-value=15 Score=30.11 Aligned_cols=23 Identities=26% Similarity=0.537 Sum_probs=19.6
Q ss_pred eeeEEEEEcCCCCcccCCCEEEec
Q 032685 85 LMGEILTVGADVGQVNAGKKVLFS 108 (136)
Q Consensus 85 ~~G~VVAVG~g~g~VkvGD~Vlf~ 108 (136)
..|+|+++|++...+ +||+|..+
T Consensus 61 ~~G~V~~vG~~v~~~-~GdrV~~~ 83 (349)
T TIGR03201 61 ISGRVIQAGAGAASW-IGKAVIVP 83 (349)
T ss_pred ceEEEEEeCCCcCCC-CCCEEEEC
Confidence 579999999987666 99999874
No 106
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=52.98 E-value=16 Score=29.23 Aligned_cols=23 Identities=26% Similarity=0.530 Sum_probs=20.3
Q ss_pred eeeEEEEEcCCCCcccCCCEEEe
Q 032685 85 LMGEILTVGADVGQVNAGKKVLF 107 (136)
Q Consensus 85 ~~G~VVAVG~g~g~VkvGD~Vlf 107 (136)
..|.|+++|.+...+++||+|+.
T Consensus 66 ~~G~V~~vG~~v~~~~~Gd~V~~ 88 (329)
T cd08298 66 IVGRVEAVGPGVTRFSVGDRVGV 88 (329)
T ss_pred ccEEEEEECCCCCCCcCCCEEEE
Confidence 57999999987767999999986
No 107
>cd08271 MDR5 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=52.17 E-value=16 Score=28.59 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=21.6
Q ss_pred ceeeEEEEEcCCCCcccCCCEEEec
Q 032685 84 YLMGEILTVGADVGQVNAGKKVLFS 108 (136)
Q Consensus 84 ~~~G~VVAVG~g~g~VkvGD~Vlf~ 108 (136)
...|+|+++|++...+++||+|+..
T Consensus 63 e~~G~v~~~G~~~~~~~~Gd~V~~~ 87 (325)
T cd08271 63 DGAGVVVAVGAKVTGWKVGDRVAYH 87 (325)
T ss_pred ceEEEEEEeCCCCCcCCCCCEEEec
Confidence 3579999999887789999999975
No 108
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=51.89 E-value=16 Score=28.76 Aligned_cols=26 Identities=27% Similarity=0.377 Sum_probs=22.4
Q ss_pred ceeeEEEEEcCCCCcccCCCEEEecC
Q 032685 84 YLMGEILTVGADVGQVNAGKKVLFSD 109 (136)
Q Consensus 84 ~~~G~VVAVG~g~g~VkvGD~Vlf~~ 109 (136)
...|.|+++|++...+++||+|+...
T Consensus 63 e~~G~v~~~G~~v~~~~~Gd~V~~~~ 88 (323)
T cd05282 63 EGVGVVVEVGSGVSGLLVGQRVLPLG 88 (323)
T ss_pred ceEEEEEEeCCCCCCCCCCCEEEEeC
Confidence 36799999999877899999999854
No 109
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=51.83 E-value=17 Score=28.34 Aligned_cols=25 Identities=28% Similarity=0.514 Sum_probs=21.7
Q ss_pred ceeeEEEEEcCCCCcccCCCEEEec
Q 032685 84 YLMGEILTVGADVGQVNAGKKVLFS 108 (136)
Q Consensus 84 ~~~G~VVAVG~g~g~VkvGD~Vlf~ 108 (136)
...|.|+++|++...+++||+|+..
T Consensus 65 e~~G~v~~~G~~v~~~~~Gd~V~~~ 89 (319)
T cd08267 65 DFAGEVVAVGSGVTRFKVGDEVFGR 89 (319)
T ss_pred eeeEEEEEeCCCCCCCCCCCEEEEe
Confidence 3679999999988789999999864
No 110
>cd06819 PLPDE_III_LS_D-TA Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Low Specificity D-Threonine Aldolase. Low specificity D-threonine aldolase (Low specificity D-TA, EC 4.3.1.18), encoded by dtaAS gene from Arthrobacter sp. strain DK-38, is the prototype of this subfamily. Low specificity D-TAs are fold type III PLP-dependent enzymes that catalyze the interconversion between D-threonine/D-allo-threonine and glycine plus acetaldehyde. Both PLP and divalent cations (eg. Mn2+) are required for catalytic activity. Members of this subfamily show similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on its similarity to AR, it is possible that low specificity D-TAs also form dimers in solution. Experimental data show that t
Probab=51.53 E-value=35 Score=28.40 Aligned_cols=37 Identities=14% Similarity=0.091 Sum_probs=26.9
Q ss_pred CcccCCCEEEecC-CCceEEEeCCCeeEEEEecCcEEEEe
Q 032685 97 GQVNAGKKVLFSD-ISAYEVDLGADERHCFVKESDLLAVV 135 (136)
Q Consensus 97 g~VkvGD~Vlf~~-y~G~ev~~~~ge~y~ivre~DILAvl 135 (136)
..+++||+|.|-. |....+..= ..|++++.+.|...+
T Consensus 315 ~~~~vGd~v~~~p~h~c~t~~~~--~~~~vv~~~~v~~~w 352 (358)
T cd06819 315 APLKIGDRLELVPGHCDPTVNLH--DWYVGVRGGVVEDVW 352 (358)
T ss_pred CCCCCCCEEEEECCCcCcccccc--CEEEEEECCEEEEEE
Confidence 4699999999976 777666543 357778877776654
No 111
>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1. Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=51.49 E-value=14 Score=29.68 Aligned_cols=24 Identities=21% Similarity=0.379 Sum_probs=21.0
Q ss_pred eeeEEEEEcCCCCcccCCCEEEec
Q 032685 85 LMGEILTVGADVGQVNAGKKVLFS 108 (136)
Q Consensus 85 ~~G~VVAVG~g~g~VkvGD~Vlf~ 108 (136)
..|+|+++|++...+++||+|...
T Consensus 81 ~~G~v~~vG~~v~~~~~Gd~V~~~ 104 (350)
T cd08248 81 CSGVVVDIGSGVKSFEIGDEVWGA 104 (350)
T ss_pred eEEEEEecCCCcccCCCCCEEEEe
Confidence 579999999887789999999874
No 112
>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=51.22 E-value=17 Score=28.27 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=21.3
Q ss_pred ceeeEEEEEcCCCCcccCCCEEEec
Q 032685 84 YLMGEILTVGADVGQVNAGKKVLFS 108 (136)
Q Consensus 84 ~~~G~VVAVG~g~g~VkvGD~Vlf~ 108 (136)
...|.|+++|++...+++||+|+.-
T Consensus 64 e~~G~v~~~G~~~~~~~~Gd~V~~~ 88 (326)
T cd08272 64 DVAGVVEAVGEGVTRFRVGDEVYGC 88 (326)
T ss_pred ceeEEEEEeCCCCCCCCCCCEEEEc
Confidence 3579999999877789999999964
No 113
>cd03703 aeIF5B_II aeIF5B_II: This family represents the domain II of archeal and eukaryotic aeIF5B. aeIF5B is a homologue of prokaryotic Initiation Factor 2 (IF2). Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of joining of 60S subunits. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains of EF1A, eEF1A and aeIF2gamma.
Probab=50.94 E-value=27 Score=25.81 Aligned_cols=17 Identities=12% Similarity=0.440 Sum_probs=14.1
Q ss_pred CCcccCCCEEEecCCCc
Q 032685 96 VGQVNAGKKVLFSDISA 112 (136)
Q Consensus 96 ~g~VkvGD~Vlf~~y~G 112 (136)
+|.+++||+|++....|
T Consensus 24 ~GtL~~GD~Iv~g~~~G 40 (110)
T cd03703 24 DGTLREGDTIVVCGLNG 40 (110)
T ss_pred CCeEecCCEEEEccCCC
Confidence 46799999999988665
No 114
>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=50.14 E-value=18 Score=28.73 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=21.5
Q ss_pred eeeEEEEEcCCCCcccCCCEEEecC
Q 032685 85 LMGEILTVGADVGQVNAGKKVLFSD 109 (136)
Q Consensus 85 ~~G~VVAVG~g~g~VkvGD~Vlf~~ 109 (136)
..|.|+.+|++.-.+++||+|.--.
T Consensus 65 ~~G~v~~vG~~v~~~~~Gd~V~~~~ 89 (331)
T cd08273 65 LVGRVDALGSGVTGFEVGDRVAALT 89 (331)
T ss_pred eEEEEEEeCCCCccCCCCCEEEEeC
Confidence 5799999998877899999999743
No 115
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=49.25 E-value=20 Score=28.51 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=21.9
Q ss_pred ceeeEEEEEcCCCCcccCCCEEEecC
Q 032685 84 YLMGEILTVGADVGQVNAGKKVLFSD 109 (136)
Q Consensus 84 ~~~G~VVAVG~g~g~VkvGD~Vlf~~ 109 (136)
...|.|+++|++...+++||+|+...
T Consensus 67 e~~G~v~~vG~~v~~~~~Gd~V~~~~ 92 (329)
T cd08250 67 EGVGEVVAVGEGVTDFKVGDAVATMS 92 (329)
T ss_pred eeEEEEEEECCCCCCCCCCCEEEEec
Confidence 35799999998777799999999753
No 116
>PRK13771 putative alcohol dehydrogenase; Provisional
Probab=49.25 E-value=19 Score=28.78 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=21.3
Q ss_pred eeeEEEEEcCCCCcccCCCEEEecC
Q 032685 85 LMGEILTVGADVGQVNAGKKVLFSD 109 (136)
Q Consensus 85 ~~G~VVAVG~g~g~VkvGD~Vlf~~ 109 (136)
..|+|+++|.+...+++||+|+...
T Consensus 62 ~~G~v~~~g~~~~~~~~G~~V~~~~ 86 (334)
T PRK13771 62 VVGTVEEVGENVKGFKPGDRVASLL 86 (334)
T ss_pred ceEEEEEeCCCCccCCCCCEEEECC
Confidence 5799999998876789999998753
No 117
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=48.27 E-value=18 Score=29.58 Aligned_cols=22 Identities=23% Similarity=0.525 Sum_probs=18.9
Q ss_pred eeeEEEEEcCCCCcccCCCEEEec
Q 032685 85 LMGEILTVGADVGQVNAGKKVLFS 108 (136)
Q Consensus 85 ~~G~VVAVG~g~g~VkvGD~Vlf~ 108 (136)
..|+|++| +...+++||+|.+.
T Consensus 67 ~~G~V~~v--~v~~~~vGdrV~~~ 88 (343)
T PRK09880 67 VIGKIVHS--DSSGLKEGQTVAIN 88 (343)
T ss_pred cEEEEEEe--cCccCCCCCEEEEC
Confidence 67999999 55679999999875
No 118
>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding
Probab=47.96 E-value=20 Score=27.64 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=20.9
Q ss_pred eeeEEEEEcCCCCcccCCCEEEec
Q 032685 85 LMGEILTVGADVGQVNAGKKVLFS 108 (136)
Q Consensus 85 ~~G~VVAVG~g~g~VkvGD~Vlf~ 108 (136)
..|+|+.+|++...+++||+|+..
T Consensus 65 ~~G~v~~vg~~~~~~~~Gd~V~~~ 88 (323)
T cd05276 65 VAGVVVAVGPGVTGWKVGDRVCAL 88 (323)
T ss_pred eEEEEEeeCCCCCCCCCCCEEEEe
Confidence 579999999887788999999864
No 119
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=47.48 E-value=20 Score=29.59 Aligned_cols=24 Identities=29% Similarity=0.585 Sum_probs=20.0
Q ss_pred ceeeEEEEEcCCCCc---ccCCCEEEe
Q 032685 84 YLMGEILTVGADVGQ---VNAGKKVLF 107 (136)
Q Consensus 84 ~~~G~VVAVG~g~g~---VkvGD~Vlf 107 (136)
...|+|++||++... +++||+|+.
T Consensus 60 e~~G~v~~vG~~~~~~~~~~~Gd~V~~ 86 (367)
T cd08263 60 EISGEVVEVGPNVENPYGLSVGDRVVG 86 (367)
T ss_pred ccceEEEEeCCCCCCCCcCCCCCEEEE
Confidence 367999999987544 999999987
No 120
>cd08252 AL_MDR Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil
Probab=47.35 E-value=20 Score=28.56 Aligned_cols=24 Identities=25% Similarity=0.506 Sum_probs=21.1
Q ss_pred eeeEEEEEcCCCCcccCCCEEEec
Q 032685 85 LMGEILTVGADVGQVNAGKKVLFS 108 (136)
Q Consensus 85 ~~G~VVAVG~g~g~VkvGD~Vlf~ 108 (136)
..|.|+.+|++...+++||+|++.
T Consensus 67 ~~G~v~~~G~~v~~~~~Gd~V~~~ 90 (336)
T cd08252 67 ASGVVEAVGSEVTLFKVGDEVYYA 90 (336)
T ss_pred eEEEEEEcCCCCCCCCCCCEEEEc
Confidence 579999999987779999999975
No 121
>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family. Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.
Probab=46.80 E-value=22 Score=27.58 Aligned_cols=25 Identities=28% Similarity=0.469 Sum_probs=21.3
Q ss_pred ceeeEEEEEcCCCCcccCCCEEEec
Q 032685 84 YLMGEILTVGADVGQVNAGKKVLFS 108 (136)
Q Consensus 84 ~~~G~VVAVG~g~g~VkvGD~Vlf~ 108 (136)
...|.|+.+|.....+++||+|+-.
T Consensus 64 e~~G~v~~vg~~~~~~~~Gd~V~~~ 88 (325)
T TIGR02824 64 EVAGEVVAVGEGVSRWKVGDRVCAL 88 (325)
T ss_pred eeEEEEEEeCCCCCCCCCCCEEEEc
Confidence 3579999999877789999999874
No 122
>cd08249 enoyl_reductase_like enoyl_reductase_like. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de
Probab=46.53 E-value=21 Score=29.06 Aligned_cols=25 Identities=24% Similarity=0.399 Sum_probs=21.2
Q ss_pred ceeeEEEEEcCCCCcccCCCEEEec
Q 032685 84 YLMGEILTVGADVGQVNAGKKVLFS 108 (136)
Q Consensus 84 ~~~G~VVAVG~g~g~VkvGD~Vlf~ 108 (136)
...|.|+++|++.-.+++||+|+--
T Consensus 61 e~~G~v~~vG~~v~~~~~Gd~V~~~ 85 (339)
T cd08249 61 DFAGTVVEVGSGVTRFKVGDRVAGF 85 (339)
T ss_pred eeeEEEEEeCCCcCcCCCCCEEEEE
Confidence 3679999999987779999999864
No 123
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=45.49 E-value=25 Score=28.52 Aligned_cols=24 Identities=33% Similarity=0.498 Sum_probs=20.6
Q ss_pred ceeeEEEEEcCCCCcccCCCEEEe
Q 032685 84 YLMGEILTVGADVGQVNAGKKVLF 107 (136)
Q Consensus 84 ~~~G~VVAVG~g~g~VkvGD~Vlf 107 (136)
...|+|+++|++....++||+|+.
T Consensus 64 e~~G~V~~~G~~v~~~~~Gd~V~~ 87 (341)
T cd05281 64 EFAGEVVEVGEGVTRVKVGDYVSA 87 (341)
T ss_pred ceEEEEEEECCCCCCCCCCCEEEE
Confidence 358999999987667899999986
No 124
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=45.23 E-value=81 Score=23.59 Aligned_cols=51 Identities=25% Similarity=0.360 Sum_probs=31.4
Q ss_pred cceeeEEEEEcCCCC-cccCCCEEEe-----------cCCCc--eEEEeCCCeeEEEEecCcEEEEeC
Q 032685 83 RYLMGEILTVGADVG-QVNAGKKVLF-----------SDISA--YEVDLGADERHCFVKESDLLAVVE 136 (136)
Q Consensus 83 k~~~G~VVAVG~g~g-~VkvGD~Vlf-----------~~y~G--~ev~~~~ge~y~ivre~DILAvle 136 (136)
.|..|+|+.+=-..| .|+.||++.. .+.+| .+|-.++|+ .+...|+|.+|+
T Consensus 75 SPm~Gtv~~~~V~vGd~V~~Gq~l~IiEAMKmeneI~A~~~G~V~~Ilv~~G~---~Ve~G~~L~~I~ 139 (140)
T COG0511 75 SPMVGTVYKPFVEVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEILVKNGD---PVEYGDPLAVIE 139 (140)
T ss_pred cCcceEEEEEeeccCCEEcCCCEEEEEEeeeccceecCCCCcEEEEEEecCCC---ccCCCCEEEEec
Confidence 367788887554455 4888888876 23455 345444343 346677777764
No 125
>cd08275 MDR3 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=44.11 E-value=25 Score=27.60 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=21.2
Q ss_pred eeeEEEEEcCCCCcccCCCEEEec
Q 032685 85 LMGEILTVGADVGQVNAGKKVLFS 108 (136)
Q Consensus 85 ~~G~VVAVG~g~g~VkvGD~Vlf~ 108 (136)
..|.|+.+|++...+++||+|+..
T Consensus 64 ~~G~v~~~g~~~~~~~~G~~V~~~ 87 (337)
T cd08275 64 CAGTVEAVGEGVKDFKVGDRVMGL 87 (337)
T ss_pred eEEEEEEECCCCcCCCCCCEEEEe
Confidence 579999999987789999999974
No 126
>PF06890 Phage_Mu_Gp45: Bacteriophage Mu Gp45 protein; InterPro: IPR014462 This entry is represented by the Bacteriophage Mu, Gp45. The characteristics of the protein distribution suggest prophage matches.
Probab=42.49 E-value=1.4e+02 Score=23.34 Aligned_cols=38 Identities=16% Similarity=0.228 Sum_probs=26.7
Q ss_pred ceEEeccCccccccceeeEEEEEcCCC---CcccCCCEEEecCCC
Q 032685 70 GGILLPKAAVKFERYLMGEILTVGADV---GQVNAGKKVLFSDIS 111 (136)
Q Consensus 70 gGIiLP~sa~~~ek~~~G~VVAVG~g~---g~VkvGD~Vlf~~y~ 111 (136)
-+|+||-.-. ...|.||++.... ..++.|+.++|...+
T Consensus 47 ~~vvl~lGG~----rs~~Vvia~~d~~yR~~~L~~GEvalY~~~G 87 (162)
T PF06890_consen 47 EAVVLFLGGD----RSHGVVIAVEDRRYRPKGLKPGEVALYDDEG 87 (162)
T ss_pred eEEEEEeccC----CcceEEEEeCCccccccCCCCCcEEEEcCCC
Confidence 4566665542 4578888888754 258999999998754
No 127
>cd06820 PLPDE_III_LS_D-TA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Low Specificity D-Threonine Aldolase-like. This subfamily is composed of uncharacterized bacterial proteins with similarity to low specificity D-threonine aldolase (D-TA), which is a fold type III PLP-dependent enzyme that catalyzes the interconversion between D-threonine/D-allo-threonine and glycine plus acetaldehyde. Both PLP and divalent cations (eg. Mn2+) are required for catalytic activity. Low specificity D-TAs show similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on its similarity to AR, it is possible that low specificity D-TAs also form dimers in solution. Experimental data show that the monomeric form of low specificity D-TAs exh
Probab=42.17 E-value=53 Score=27.32 Aligned_cols=37 Identities=14% Similarity=0.177 Sum_probs=27.2
Q ss_pred CcccCCCEEEecC-CCceEEEeCCCeeEEEEecCcEEEEe
Q 032685 97 GQVNAGKKVLFSD-ISAYEVDLGADERHCFVKESDLLAVV 135 (136)
Q Consensus 97 g~VkvGD~Vlf~~-y~G~ev~~~~ge~y~ivre~DILAvl 135 (136)
..+++||+|.|-. |....+-.= ..|++++.+.|..++
T Consensus 310 ~~~~vGd~i~~~p~h~c~t~~~~--~~~~~~~~~~v~~~w 347 (353)
T cd06820 310 ALPRVGDRVRVVPNHACVVVNLV--DEVYLVDGGEVVETW 347 (353)
T ss_pred CCCCCCCEEEEECCCcCcchhcC--CEEEEEECCEEEEEE
Confidence 4699999999976 777666544 357788887776654
No 128
>PF02559 CarD_CdnL_TRCF: CarD-like/TRCF domain; InterPro: IPR003711 The bacterium Myxococcus xanthus responds to blue light by producing carotenoids. It also responds to starvation conditions by developing fruiting bodies, where the cells differentiate into myxospores. Each response entails the transcriptional activation of a separate set of genes. A single gene, carD, is required for the activation of both light- and starvation-inducible genes []. The predicted protein contains four repeats of a DNA-binding domain present in mammalian high mobility group I(Y) proteins and other nuclear proteins from animals and plants. Other peptide stretches on CarD also resemble functional domains typical of eukaryotic transcription factors, including a very acidic region and a leucine zipper. High mobility group yI(Y) proteins are known to bind the minor groove of A+T-rich DNA [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3MLQ_H 2EYQ_A.
Probab=41.11 E-value=24 Score=24.33 Aligned_cols=14 Identities=14% Similarity=0.266 Sum_probs=11.0
Q ss_pred ccCCCEEEecCCCc
Q 032685 99 VNAGKKVLFSDISA 112 (136)
Q Consensus 99 VkvGD~Vlf~~y~G 112 (136)
+++||.|+++.++-
T Consensus 2 f~~GD~VVh~~~Gv 15 (98)
T PF02559_consen 2 FKIGDYVVHPNHGV 15 (98)
T ss_dssp --TTSEEEETTTEE
T ss_pred CCCCCEEEECCCce
Confidence 68999999999883
No 129
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=40.93 E-value=24 Score=28.04 Aligned_cols=22 Identities=18% Similarity=0.166 Sum_probs=18.7
Q ss_pred eeeEEEEEcCCCCcccCCCEEEec
Q 032685 85 LMGEILTVGADVGQVNAGKKVLFS 108 (136)
Q Consensus 85 ~~G~VVAVG~g~g~VkvGD~Vlf~ 108 (136)
..|+|+++|++ .+++||+|+..
T Consensus 72 ~~G~V~~~G~~--~~~~Gd~V~~~ 93 (329)
T cd05288 72 GVGEVVESRSP--DFKVGDLVSGF 93 (329)
T ss_pred eEEEEEecCCC--CCCCCCEEecc
Confidence 57999999964 79999999864
No 130
>PRK12278 50S ribosomal protein L21/unknown domain fusion protein; Provisional
Probab=40.83 E-value=60 Score=26.68 Aligned_cols=30 Identities=20% Similarity=0.401 Sum_probs=21.1
Q ss_pred EEEEcCCCCcccCCCEEEecCCC---ceEEEeC
Q 032685 89 ILTVGADVGQVNAGKKVLFSDIS---AYEVDLG 118 (136)
Q Consensus 89 VVAVG~g~g~VkvGD~Vlf~~y~---G~ev~~~ 118 (136)
||.+|.--..|..||.+.+.+.. |.+|.++
T Consensus 4 VI~~gGKQykV~~Gd~i~Vekl~~~~G~~i~~~ 36 (221)
T PRK12278 4 VIKTGGKQYKVQAGDLLRVEKLAAEAGETVQFG 36 (221)
T ss_pred EEEeCCEEEEEeCCCEEEEeccCCCCCCEEEEe
Confidence 56666434568888888887653 6778886
No 131
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=40.22 E-value=31 Score=26.52 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=21.5
Q ss_pred eeeEEEEEcCCCCcccCCCEEEecC
Q 032685 85 LMGEILTVGADVGQVNAGKKVLFSD 109 (136)
Q Consensus 85 ~~G~VVAVG~g~g~VkvGD~Vlf~~ 109 (136)
..|.|+.+|++.-.+++||+|....
T Consensus 67 ~~G~v~~~G~~~~~~~~G~~V~~~~ 91 (309)
T cd05289 67 VAGVVVAVGPGVTGFKVGDEVFGMT 91 (309)
T ss_pred eeEEEEeeCCCCCCCCCCCEEEEcc
Confidence 5799999998877899999998754
No 132
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=40.05 E-value=32 Score=26.49 Aligned_cols=26 Identities=23% Similarity=0.348 Sum_probs=21.7
Q ss_pred ceeeEEEEEcCCCCcccCCCEEEecC
Q 032685 84 YLMGEILTVGADVGQVNAGKKVLFSD 109 (136)
Q Consensus 84 ~~~G~VVAVG~g~g~VkvGD~Vlf~~ 109 (136)
...|+|+.+|++...+++||+|+.-.
T Consensus 64 e~~G~v~~~g~~~~~~~~G~~V~~~~ 89 (323)
T cd08241 64 EVAGVVEAVGEGVTGFKVGDRVVALT 89 (323)
T ss_pred eeEEEEEEeCCCCCCCCCCCEEEEec
Confidence 35799999998777789999999753
No 133
>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=39.31 E-value=33 Score=27.00 Aligned_cols=25 Identities=28% Similarity=0.473 Sum_probs=21.0
Q ss_pred ceeeEEEEEcCCCCcccCCCEEEec
Q 032685 84 YLMGEILTVGADVGQVNAGKKVLFS 108 (136)
Q Consensus 84 ~~~G~VVAVG~g~g~VkvGD~Vlf~ 108 (136)
...|+|+.+|+....+++||+|+..
T Consensus 64 e~~G~v~~~G~~~~~~~~Gd~V~~~ 88 (336)
T cd08276 64 DGAGEVVAVGEGVTRFKVGDRVVPT 88 (336)
T ss_pred ceeEEEEEeCCCCcCCCCCCEEEEe
Confidence 3579999999876678999999874
No 134
>TIGR00061 L21 ribosomal protein L21. Eubacterial and chloroplast.
Probab=38.94 E-value=75 Score=22.95 Aligned_cols=30 Identities=20% Similarity=0.411 Sum_probs=18.3
Q ss_pred EEEEcCCCCcccCCCEEEecCCC---ceEEEeC
Q 032685 89 ILTVGADVGQVNAGKKVLFSDIS---AYEVDLG 118 (136)
Q Consensus 89 VVAVG~g~g~VkvGD~Vlf~~y~---G~ev~~~ 118 (136)
|+..|-.-..|.+||.+..+... |..|+++
T Consensus 3 Ii~~gGkQykV~~Gd~i~Ve~l~~~~G~~i~l~ 35 (101)
T TIGR00061 3 IVEIGGKQYKVEEGQTVRIEKLDAAPGDTVEFD 35 (101)
T ss_pred EEEECCEEEEEeCCCEEEEcccCCCCCCEEEEE
Confidence 55666222357777777776643 5667765
No 135
>PF00829 Ribosomal_L21p: Ribosomal prokaryotic L21 protein; InterPro: IPR001787 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L21 is one of the proteins from the large ribosomal subunit. In Escherichia coli, L21 is known to bind to the 23S rRNA in the presence of L20. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities, groups: Bacterial L21. Marchantia polymorpha chloroplast L21. Cyanelle L21. Plant chloroplast L21 (nuclear-encoded). Bacterial L21 is a protein of about 100 amino-acid residues, the mature form of the spinach chloroplast L21 has 200 residues.; GO: 0003723 RNA binding, 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2XG0_V 2X9S_V 2XG2_V 3UZ1_2 2Y19_V 2WDL_V 3V23_V 2WRO_V 2WRL_V 2Y11_V ....
Probab=38.70 E-value=42 Score=23.83 Aligned_cols=30 Identities=17% Similarity=0.382 Sum_probs=18.1
Q ss_pred EEEEcCCCCcccCCCEEEecCCC---ceEEEeC
Q 032685 89 ILTVGADVGQVNAGKKVLFSDIS---AYEVDLG 118 (136)
Q Consensus 89 VVAVG~g~g~VkvGD~Vlf~~y~---G~ev~~~ 118 (136)
|+.+|..-..|.+||.+..+... |.+|+++
T Consensus 4 Ii~~ggkQykV~~gd~i~v~~l~~~~G~~i~l~ 36 (96)
T PF00829_consen 4 IIEIGGKQYKVEEGDVIDVERLDAEVGDKIELD 36 (96)
T ss_dssp EEESSSEEEEESSSEEEEEESTSSSTTSEEEET
T ss_pred EEEECCEEEEEeCCCEEEECCcCcCCCCEEEEE
Confidence 44444222357778877777653 6677776
No 136
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=37.64 E-value=33 Score=26.69 Aligned_cols=22 Identities=23% Similarity=0.443 Sum_probs=18.5
Q ss_pred eeeEEEEEcCCCCcccCCCEEEec
Q 032685 85 LMGEILTVGADVGQVNAGKKVLFS 108 (136)
Q Consensus 85 ~~G~VVAVG~g~g~VkvGD~Vlf~ 108 (136)
..|+|+++|. ..+++||+|+..
T Consensus 64 ~~G~v~~vG~--~~~~~Gd~V~~~ 85 (320)
T cd08243 64 AVGEVEEAPG--GTFTPGQRVATA 85 (320)
T ss_pred eEEEEEEecC--CCCCCCCEEEEe
Confidence 5799999994 478999999864
No 137
>PRK09838 periplasmic copper-binding protein; Provisional
Probab=37.33 E-value=98 Score=22.84 Aligned_cols=11 Identities=36% Similarity=0.806 Sum_probs=8.1
Q ss_pred cccCCCEEEec
Q 032685 98 QVNAGKKVLFS 108 (136)
Q Consensus 98 ~VkvGD~Vlf~ 108 (136)
.+++||+|-|.
T Consensus 88 ~lk~G~~V~F~ 98 (115)
T PRK09838 88 EIKTGDKVAFN 98 (115)
T ss_pred cCCCCCEEEEE
Confidence 37888888774
No 138
>TIGR00523 eIF-1A eukaryotic/archaeal initiation factor 1A. Recommended nomenclature: eIF-1A for eukaryotes, aIF-1A for Archaea. Also called eIF-4C
Probab=36.82 E-value=51 Score=23.76 Aligned_cols=15 Identities=13% Similarity=0.200 Sum_probs=13.1
Q ss_pred ccCCCEEEecCCCce
Q 032685 99 VNAGKKVLFSDISAY 113 (136)
Q Consensus 99 VkvGD~Vlf~~y~G~ 113 (136)
++.||.|++..|..+
T Consensus 58 I~~GD~VlVsp~d~~ 72 (99)
T TIGR00523 58 IREGDVVIVKPWEFQ 72 (99)
T ss_pred ecCCCEEEEEEccCC
Confidence 999999999887754
No 139
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=36.69 E-value=34 Score=27.21 Aligned_cols=20 Identities=20% Similarity=0.172 Sum_probs=17.2
Q ss_pred eeeEEEEEcCCCCcccCCCEEEe
Q 032685 85 LMGEILTVGADVGQVNAGKKVLF 107 (136)
Q Consensus 85 ~~G~VVAVG~g~g~VkvGD~Vlf 107 (136)
..|+|+++|++ .++||+|..
T Consensus 58 ~~G~Vv~~G~~---~~~G~~V~~ 77 (319)
T cd08242 58 FVGIVEEGPEA---ELVGKRVVG 77 (319)
T ss_pred EEEEEEEeCCC---CCCCCeEEE
Confidence 67999999986 579999974
No 140
>CHL00075 rpl21 ribosomal protein L21
Probab=36.00 E-value=69 Score=23.50 Aligned_cols=30 Identities=17% Similarity=0.205 Sum_probs=18.7
Q ss_pred EEEEcCCCCcccCCCEEEecCC---CceEEEeC
Q 032685 89 ILTVGADVGQVNAGKKVLFSDI---SAYEVDLG 118 (136)
Q Consensus 89 VVAVG~g~g~VkvGD~Vlf~~y---~G~ev~~~ 118 (136)
|+.+|-.-..|++||.+.++.. .|.+|+++
T Consensus 6 Ii~~gGkQykV~~Gd~i~vekl~~~~G~~i~l~ 38 (108)
T CHL00075 6 IIEAGGKQLWVEPGRFYDINHFPLEPGTKILLN 38 (108)
T ss_pred EEEECCEEEEEeCCCEEEEEEcCCCCCCEEEEE
Confidence 5566632345777887777653 36777775
No 141
>PRK05573 rplU 50S ribosomal protein L21; Validated
Probab=35.26 E-value=99 Score=22.30 Aligned_cols=30 Identities=17% Similarity=0.347 Sum_probs=15.4
Q ss_pred EEEEcCCCCcccCCCEEEecCCC---ceEEEeC
Q 032685 89 ILTVGADVGQVNAGKKVLFSDIS---AYEVDLG 118 (136)
Q Consensus 89 VVAVG~g~g~VkvGD~Vlf~~y~---G~ev~~~ 118 (136)
|+.+|..-.-|++||.+..+... |.+|+++
T Consensus 4 Ii~~gGkQykV~~Gd~i~v~~l~~~~G~~i~l~ 36 (103)
T PRK05573 4 IIKTGGKQYKVEEGDVIKVEKLDAEVGDTVEFD 36 (103)
T ss_pred EEEECCEEEEEeCCCEEEEcccCCCCCCEEEEe
Confidence 44455322346666666665532 4555554
No 142
>COG4384 Mu-like prophage protein gp45 [Function unknown]
Probab=34.41 E-value=1.8e+02 Score=23.82 Aligned_cols=42 Identities=14% Similarity=0.143 Sum_probs=25.6
Q ss_pred eeeEEEEEcCCC---CcccCCCEEEecCCCc-------eEEEeCCCeeEEEEe
Q 032685 85 LMGEILTVGADV---GQVNAGKKVLFSDISA-------YEVDLGADERHCFVK 127 (136)
Q Consensus 85 ~~G~VVAVG~g~---g~VkvGD~Vlf~~y~G-------~ev~~~~ge~y~ivr 127 (136)
..|.||.+=.+. ..++.||+|+|..++. -.|+.+ -+.|-+..
T Consensus 79 Shgviv~~~~~syR~~GL~aGeT~iY~~eG~~i~Lteg~~Ie~~-ck~~~v~a 130 (203)
T COG4384 79 SHGVIVVSQHGSYRITGLKAGETVIYNHEGAKIVLTEGGIIEAD-CKTLTVNA 130 (203)
T ss_pred ceeEEEEecCCccccccccCCceEEEeccCcEEEEccCcEEEEe-ccEEEEec
Confidence 445555554443 3699999999988763 344454 35555443
No 143
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=33.76 E-value=83 Score=19.28 Aligned_cols=30 Identities=17% Similarity=0.205 Sum_probs=20.4
Q ss_pred CcccCCCEEEecCCCceEEEeCCCeeEEEE
Q 032685 97 GQVNAGKKVLFSDISAYEVDLGADERHCFV 126 (136)
Q Consensus 97 g~VkvGD~Vlf~~y~G~ev~~~~ge~y~iv 126 (136)
-.+++||.++++.-.--.+...+++.+.++
T Consensus 39 ~~l~~Gd~~~i~~~~~H~~~n~~~~~~~~l 68 (71)
T PF07883_consen 39 VELKPGDAIYIPPGVPHQVRNPGDEPARFL 68 (71)
T ss_dssp EEEETTEEEEEETTSEEEEEEESSSEEEEE
T ss_pred eEccCCEEEEECCCCeEEEEECCCCCEEEE
Confidence 469999999999876655554434555543
No 144
>cd06813 PLPDE_III_DSD_D-TA_like_2 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 2. This subfamily is composed of uncharacterized bacterial proteins with similarity to eukaryotic D-serine dehydratases (DSD) and D-threonine aldolases (D-TA). DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. DSD and D-TA are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on their similarity to AR, it is possible mem
Probab=33.35 E-value=52 Score=28.24 Aligned_cols=36 Identities=14% Similarity=0.251 Sum_probs=25.5
Q ss_pred cccCCCEEEecCC-CceEEEeCCCeeEEEEecCcEEEEe
Q 032685 98 QVNAGKKVLFSDI-SAYEVDLGADERHCFVKESDLLAVV 135 (136)
Q Consensus 98 ~VkvGD~Vlf~~y-~G~ev~~~~ge~y~ivre~DILAvl 135 (136)
.+++||+|.|.+- ++.-++.= .++++++.+.|.+++
T Consensus 342 ~l~~gd~v~~r~~~~~~~~~~~--~~~~~~~~~~v~~~~ 378 (388)
T cd06813 342 RLGIGDPVWFRHAKAGELCERF--NELHLVRGGEIVGTV 378 (388)
T ss_pred cCCCCCEEEEecCCcchhhhhc--CeEEEEECCEEEEEE
Confidence 4899999999774 34444332 257788988888765
No 145
>COG0298 HypC Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=33.09 E-value=51 Score=23.44 Aligned_cols=14 Identities=29% Similarity=0.418 Sum_probs=11.3
Q ss_pred cccCCCEEEecC-CC
Q 032685 98 QVNAGKKVLFSD-IS 111 (136)
Q Consensus 98 ~VkvGD~Vlf~~-y~ 111 (136)
++++||.|++.- |+
T Consensus 38 ~v~~GdyVLVHvGfA 52 (82)
T COG0298 38 EVKVGDYVLVHVGFA 52 (82)
T ss_pred ccccCCEEEEEeeEE
Confidence 799999999864 54
No 146
>TIGR00074 hypC_hupF hydrogenase assembly chaperone HypC/HupF. An additional proposed function is to shuttle the iron atom that has been liganded at the HypC/HypD complex to the precursor of the large hydrogenase (HycE) subunit. PubMed:12441107.
Probab=32.92 E-value=55 Score=22.56 Aligned_cols=15 Identities=33% Similarity=0.536 Sum_probs=11.6
Q ss_pred CcccCCCEEEecC-CC
Q 032685 97 GQVNAGKKVLFSD-IS 111 (136)
Q Consensus 97 g~VkvGD~Vlf~~-y~ 111 (136)
.++++||.|+..- |+
T Consensus 34 ~~~~vGD~VLVH~G~A 49 (76)
T TIGR00074 34 GEVKVGDYVLVHVGFA 49 (76)
T ss_pred CCCCCCCEEEEecChh
Confidence 3699999999864 44
No 147
>COG0261 RplU Ribosomal protein L21 [Translation, ribosomal structure and biogenesis]
Probab=30.70 E-value=87 Score=23.08 Aligned_cols=39 Identities=15% Similarity=0.305 Sum_probs=20.1
Q ss_pred EEEEcCCCCcccCCCEEEecCCC---ceEEEeCCCeeEEEEecCc
Q 032685 89 ILTVGADVGQVNAGKKVLFSDIS---AYEVDLGADERHCFVKESD 130 (136)
Q Consensus 89 VVAVG~g~g~VkvGD~Vlf~~y~---G~ev~~~~ge~y~ivre~D 130 (136)
|+..|-.-..|..||.+...+.. |.+|+++ +-+++.++|
T Consensus 4 ii~tGGKQykV~~G~~i~vEkl~~e~g~~v~f~---~VL~v~~~~ 45 (103)
T COG0261 4 IIKTGGKQYKVEEGDVIKVEKLDAEPGDKVEFD---EVLMVGGGE 45 (103)
T ss_pred EEEECCEEEEEecCCEEEEEEcCCCCCCEEEEE---EEEEEcCCC
Confidence 44445222346677766665533 5666665 234444443
No 148
>cd07376 PLPDE_III_DSD_D-TA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase. This family includes eukaryotic D-serine dehydratases (DSD), cryptic DSDs from bacteria, D-threonine aldolases (D-TA), low specificity D-TAs, and similar uncharacterized proteins. DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. Members of this family are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on similarity to AR, it is poss
Probab=30.14 E-value=79 Score=26.23 Aligned_cols=37 Identities=16% Similarity=0.257 Sum_probs=27.7
Q ss_pred CcccCCCEEEe-cCCCceEEEeCCCeeEEEEecCcEEEEe
Q 032685 97 GQVNAGKKVLF-SDISAYEVDLGADERHCFVKESDLLAVV 135 (136)
Q Consensus 97 g~VkvGD~Vlf-~~y~G~ev~~~~ge~y~ivre~DILAvl 135 (136)
..+++||+|.+ |......+..- ..|++++.+.|.+.+
T Consensus 304 ~~~~vGd~v~~ip~H~c~t~~~~--~~~~vv~~~~v~~~w 341 (345)
T cd07376 304 DDLPIGDRVFLVPNHACETVALH--DELYVVEGGRVAATW 341 (345)
T ss_pred CCCCCCCEEEEeCCccccchhcC--CEEEEEECCEEEEEE
Confidence 45899999999 65666666554 248888888888765
No 149
>TIGR03784 marine_sortase sortase, marine proteobacterial type. Members of this protein family are sortase enzymes, cysteine transpeptidases involved in protein sorting activities. Members of this family tend to be found in proteobacteria, rather than in Gram-positive bacteria where sortases attach proteins to the Gram-positive cell wall or participate in pilin cross-linking. Many species with this sortase appear to contain a signal target sequence, a protein with a Vault protein inter-alpha-trypsin domain (pfam08487) and a von Willebrand factor type A domain (pfam00092), encoded by an adjacent gene. These sortases are designated subfamily 6 according to Comfort and Clubb (2004).
Probab=30.04 E-value=72 Score=24.92 Aligned_cols=44 Identities=14% Similarity=0.131 Sum_probs=26.1
Q ss_pred eeEEEEEcCCC------CcccCCCEEEecCCCceEEEeCCCeeEEEEecCc
Q 032685 86 MGEILTVGADV------GQVNAGKKVLFSDISAYEVDLGADERHCFVKESD 130 (136)
Q Consensus 86 ~G~VVAVG~g~------g~VkvGD~Vlf~~y~G~ev~~~~ge~y~ivre~D 130 (136)
.|.++=.|--+ .++++||.|.+..-.|....|. =.+-.+++.+|
T Consensus 90 ~Gn~VIAGHrdt~F~~L~~L~~GD~I~v~~~~g~~~~Y~-V~~~~iV~~~d 139 (174)
T TIGR03784 90 QGNSVIAGHRDTHFAFLQELRPGDVIRLQTPDGQWQSYQ-VTATRVVDESE 139 (174)
T ss_pred CCcEEEEeeCCccCCChhhCCCCCEEEEEECCCeEEEEE-EeEEEEECCcc
Confidence 35555556422 3799999999987777654332 12233445544
No 150
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=30.00 E-value=1.6e+02 Score=19.00 Aligned_cols=50 Identities=20% Similarity=0.518 Sum_probs=25.9
Q ss_pred ceeeEEEEEcCCCC-cccCCCEE-----------EecCCCce--EEEeCCCeeEEEEecCcEEEEeC
Q 032685 84 YLMGEILTVGADVG-QVNAGKKV-----------LFSDISAY--EVDLGADERHCFVKESDLLAVVE 136 (136)
Q Consensus 84 ~~~G~VVAVG~g~g-~VkvGD~V-----------lf~~y~G~--ev~~~~ge~y~ivre~DILAvle 136 (136)
|..|++..+=-..| .|+.||.+ +..+.+|. ++...+|+ .++..++|+.|+
T Consensus 8 ~~~G~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~I~a~~~G~V~~i~v~~G~---~V~~G~~l~~i~ 71 (71)
T PRK05889 8 EIVASVLEVVVNEGDQIGKGDTLVLLESMKMEIPVLAEVAGTVSKVSVSVGD---VIQAGDLIAVIS 71 (71)
T ss_pred CCCEEEEEEEeCCCCEECCCCEEEEEEeccceeEEeCCCCEEEEEEEeCCCC---EECCCCEEEEEC
Confidence 34455555433233 35566655 44556663 34344232 356788887764
No 151
>PF10377 ATG11: Autophagy-related protein 11; InterPro: IPR019460 This family consists of proteins involved in telomere maintenance. In Schizosaccharomyces pombe (fission yeast) this protein is called Taf1 (taz1 interacting factor) and is part of the telomere cap complex. In Saccharomyces cerevisiae (baker's yeast) this protein is called ATG11 and is known to be involved in vacuolar targeting and peroxisome degradation [, ].
Probab=29.50 E-value=76 Score=23.65 Aligned_cols=35 Identities=20% Similarity=0.292 Sum_probs=22.3
Q ss_pred cccCCCEEEecCCC-ce-----EEEeCCCeeEEEEecCcEE
Q 032685 98 QVNAGKKVLFSDIS-AY-----EVDLGADERHCFVKESDLL 132 (136)
Q Consensus 98 ~VkvGD~Vlf~~y~-G~-----ev~~~~ge~y~ivre~DIL 132 (136)
.+++||.|+|-.-. +. ..-++-+-.+.|++++++-
T Consensus 42 ~f~~GDlvLflpt~~~~~~~~~~~af~~~~~~YFL~~~s~~ 82 (129)
T PF10377_consen 42 NFQVGDLVLFLPTRNHNNKKQPWAAFNVGCPHYFLHEDSIA 82 (129)
T ss_pred cCCCCCEEEEEecCCCCccccceEEeeCCCceEEEecccch
Confidence 58999999995522 22 2333334566678888773
No 152
>cd04456 S1_IF1A_like S1_IF1A_like: Translation initiation factor IF1A-like, S1-like RNA-binding domain. IF1A is also referred to as eIF1A in eukaryotes and aIF1A in archaea. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. IF1A is essential for translation initiation. eIF1A acts synergistically with eIF1 to mediate assembly of ribosomal initiation complexes at the initiation codon and maintain the accuracy of this process by recognizing and destabilizing aberrant preinitiation complexes from the mRNA. Without eIF1A and eIF1, 43S ribosomal preinitiation complexes can bind to the cap-proximal region, but are unable to reach the initiation codon. eIF1a also enhances the formation of 5'-terminal complexes in the presence of other translation initiation factors. This protein family is only found in eukaryotes and archaea.
Probab=29.28 E-value=1.4e+02 Score=20.46 Aligned_cols=39 Identities=15% Similarity=0.136 Sum_probs=25.0
Q ss_pred eeEEeeeccccCCceeeccCCeEEEEEecCCCcccceEE
Q 032685 35 TLTVNAIATKWEPTKVVPQADRVLVRLEQLPEKSAGGIL 73 (136)
Q Consensus 35 ~~~~~a~~~~~~~~~l~PLgDRVLVk~~e~e~~T~gGIi 73 (136)
...+.-++.|++..--.--||+|||+..+..+.+.+=|+
T Consensus 23 ~~~l~~i~gK~Rk~iwI~~GD~VlV~~~~~~~~~kg~Iv 61 (78)
T cd04456 23 QRRLVSIPGKLRKNIWIKRGDFLIVDPIEEGEDVKADII 61 (78)
T ss_pred CEEEEEEchhhccCEEEcCCCEEEEEecccCCCceEEEE
Confidence 344555666766553446799999988775356656554
No 153
>smart00696 DM9 Repeats found in Drosophila proteins.
Probab=29.04 E-value=69 Score=21.47 Aligned_cols=45 Identities=29% Similarity=0.279 Sum_probs=30.7
Q ss_pred eccCccccccceeeEEEEEcCCC-------CcccCCCEEEecCCCceEEEeC
Q 032685 74 LPKAAVKFERYLMGEILTVGADV-------GQVNAGKKVLFSDISAYEVDLG 118 (136)
Q Consensus 74 LP~sa~~~ek~~~G~VVAVG~g~-------g~VkvGD~Vlf~~y~G~ev~~~ 118 (136)
+|.++-.......|+.+-||-.. |.+-+.....|-.|+|.|+.++
T Consensus 12 vP~~AV~~G~~~~G~~lYvgR~~~~g~~~pGKv~p~~~~~yi~~~g~E~~~~ 63 (71)
T smart00696 12 IPPNAVVGGTDSDGEPLYVGRAYYEGSLLPGKVVPSHGCAYIPYGGQEVRLD 63 (71)
T ss_pred CCCCcEEcccCCCCCEEEEEEEEECCcEEEEEEEccCCEEEEEECCEEEEcC
Confidence 36666433334457777777641 4677788888888999998875
No 154
>PF00924 MS_channel: Mechanosensitive ion channel; InterPro: IPR006685 Mechanosensitive (MS) channels provide protection against hypo-osmotic shock, responding both to stretching of the cell membrane and to membrane depolarisation. They are present in the membranes of organisms from the three domains of life: bacteria, archaea, and eukarya []. There are two families of MS channels: large-conductance MS channels (MscL) and small-conductance MS channels (MscS or YGGB). The pressure threshold for MscS opening is 50% that of MscL []. The MscS family is much larger and more variable in size and sequence than the MscL family. Much of the diversity in MscS proteins occurs in the size of the transmembrane regions, which ranges from three to eleven transmembrane helices, although the three C-terminal helices are conserved. This family contains sequences form the MscS family of proteins. MscS folds as a homo-heptamer with a cylindrical shape, and can be divided into transmembrane and extramembrane regions: an N-terminal periplasmic region, a transmembrane region, and a C-terminal cytoplasmic region (middle and C-terminal domains). The transmembrane region forms a channel through the membrane that opens into a chamber enclosed by the extramembrane portion, the latter connecting to the cytoplasm through distinct portals [].; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 2OAU_E 2VV5_F.
Probab=28.71 E-value=62 Score=24.46 Aligned_cols=21 Identities=10% Similarity=0.362 Sum_probs=13.8
Q ss_pred cccCCCEEEecCCCceEEEeC
Q 032685 98 QVNAGKKVLFSDISAYEVDLG 118 (136)
Q Consensus 98 ~VkvGD~Vlf~~y~G~ev~~~ 118 (136)
.+++||+|.++.+.|.=.+++
T Consensus 60 pf~vGD~I~i~~~~G~V~~I~ 80 (206)
T PF00924_consen 60 PFKVGDRIEIGGVEGRVEEIG 80 (206)
T ss_dssp SS-TT-EEESSS-EEEEEEE-
T ss_pred CccCCCEEEEEEeehHHHhcC
Confidence 699999999999988655553
No 155
>cd06812 PLPDE_III_DSD_D-TA_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 1. This subfamily is composed of uncharacterized bacterial proteins with similarity to eukaryotic D-serine dehydratases (DSD) and D-threonine aldolases (D-TA). DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. DSD and D-TA are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on their similarity to AR, it is possible mem
Probab=28.63 E-value=89 Score=26.23 Aligned_cols=36 Identities=6% Similarity=0.069 Sum_probs=25.6
Q ss_pred cccCCCEEEecC-CCceEEEeCCCeeEEEEecCcEE-EEe
Q 032685 98 QVNAGKKVLFSD-ISAYEVDLGADERHCFVKESDLL-AVV 135 (136)
Q Consensus 98 ~VkvGD~Vlf~~-y~G~ev~~~~ge~y~ivre~DIL-Avl 135 (136)
.+|+||+|.|-. |....+-.- ..|++++.+.+. .++
T Consensus 331 ~~~vGd~v~~~p~H~c~t~~~~--~~~~~v~~~~~~~~~w 368 (374)
T cd06812 331 DLPIGTRLRILPNHACATAAQH--DHYHVLDGEGVVQATW 368 (374)
T ss_pred CCCCCCEEEEeCCccCcchhcC--CEEEEEeCCCEEEEEe
Confidence 589999998865 776665444 357778877776 554
No 156
>PF11604 CusF_Ec: Copper binding periplasmic protein CusF; InterPro: IPR021647 CusF is a periplasmic protein involved in copper and silver resistance in Escherichia coil. CusF forms a five-stranded beta-barrel OB fold. Cu(I) binds to H36, M47 and M49 which are conserved residues in the protein []. ; PDB: 2L55_A 2VB3_X 1ZEQ_X 2QCP_X 3E6Z_X 2VB2_X.
Probab=28.48 E-value=79 Score=20.93 Aligned_cols=11 Identities=36% Similarity=0.664 Sum_probs=7.0
Q ss_pred cccCCCEEEec
Q 032685 98 QVNAGKKVLFS 108 (136)
Q Consensus 98 ~VkvGD~Vlf~ 108 (136)
.+++||.|-|.
T Consensus 42 ~l~~Gd~V~F~ 52 (70)
T PF11604_consen 42 GLKPGDKVRFT 52 (70)
T ss_dssp S-STT-EEEEE
T ss_pred cCCCCCEEEEE
Confidence 48888888874
No 157
>PF15436 PGBA_N: Plasminogen-binding protein pgbA N-terminal
Probab=28.35 E-value=98 Score=25.52 Aligned_cols=45 Identities=13% Similarity=0.116 Sum_probs=29.3
Q ss_pred CCcccceEEeccC-ccccccceeeEEEEEcCCC--------------------CcccCCCEEEecC
Q 032685 65 PEKSAGGILLPKA-AVKFERYLMGEILTVGADV--------------------GQVNAGKKVLFSD 109 (136)
Q Consensus 65 e~~T~gGIiLP~s-a~~~ek~~~G~VVAVG~g~--------------------g~VkvGD~Vlf~~ 109 (136)
-..-.|||++-.= ...+-....+.|+++-.|. ...++||.|+|..
T Consensus 25 l~vG~SGiV~h~~~~~~~~IiA~a~V~~~~~g~A~~kf~~fd~L~Q~aLP~p~~~pk~GD~vil~~ 90 (218)
T PF15436_consen 25 LKVGESGIVVHKFDKDHSSIIARAVVISKKNGVAKAKFSVFDSLKQDALPTPKMVPKKGDEVILNY 90 (218)
T ss_pred cccCCceEEEEEecCCcceeeeEEEEEEecCCeeEEEEeehhhhhhhcCCCCccccCCCCEEEEee
Confidence 3567899999643 2111234556677776652 1499999999987
No 158
>cd06555 ASCH_PF0470_like ASC-1 homology domain, subfamily similar to Pyrococcus furiosus Pf0470. The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation.
Probab=27.52 E-value=38 Score=24.86 Aligned_cols=15 Identities=40% Similarity=0.902 Sum_probs=13.3
Q ss_pred cccCCCEEEecCCCc
Q 032685 98 QVNAGKKVLFSDISA 112 (136)
Q Consensus 98 ~VkvGD~Vlf~~y~G 112 (136)
.+++||+++|.++.+
T Consensus 31 ~ikvGD~I~f~~~~~ 45 (109)
T cd06555 31 QIKVGDKILFNDLDT 45 (109)
T ss_pred cCCCCCEEEEEEcCC
Confidence 599999999999864
No 159
>COG3264 Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]
Probab=26.83 E-value=70 Score=31.30 Aligned_cols=15 Identities=27% Similarity=0.459 Sum_probs=14.1
Q ss_pred cccCCCEEEecCCCc
Q 032685 98 QVNAGKKVLFSDISA 112 (136)
Q Consensus 98 ~VkvGD~Vlf~~y~G 112 (136)
.||+||+|-+..+.|
T Consensus 660 pvkvGD~It~g~~~G 674 (835)
T COG3264 660 PVKVGDTVTIGTVSG 674 (835)
T ss_pred CcccCCEEEECCceE
Confidence 599999999999998
No 160
>PRK06763 F0F1 ATP synthase subunit alpha; Validated
Probab=26.34 E-value=58 Score=26.89 Aligned_cols=25 Identities=24% Similarity=0.423 Sum_probs=18.2
Q ss_pred ceeeEEEEEcCCC-------------------CcccCCCEEEec
Q 032685 84 YLMGEILTVGADV-------------------GQVNAGKKVLFS 108 (136)
Q Consensus 84 ~~~G~VVAVG~g~-------------------g~VkvGD~Vlf~ 108 (136)
...|+||.|..+. -.||+||.|...
T Consensus 41 tiEGrVvEV~~~~i~iesk~yn~~v~i~~d~~~nvKVGD~VKaT 84 (213)
T PRK06763 41 TIEGRVVEVDNGVIVIKSKQYEEPVSVYIDSLSNVKVGDEVKAT 84 (213)
T ss_pred eeeeEEEEEeCCEEEEEeccCCCceEEEecCCCCcccCcEEEEc
Confidence 5678888888752 148999998764
No 161
>KOG3209 consensus WW domain-containing protein [General function prediction only]
Probab=26.26 E-value=62 Score=31.66 Aligned_cols=47 Identities=17% Similarity=0.315 Sum_probs=30.3
Q ss_pred EEEEEecCCCcccceEEeccCccccccceeeEEEEEcCC--CCcccCCCEEEe
Q 032685 57 VLVRLEQLPEKSAGGILLPKAAVKFERYLMGEILTVGAD--VGQVNAGKKVLF 107 (136)
Q Consensus 57 VLVk~~e~e~~T~gGIiLP~sa~~~ek~~~G~VVAVG~g--~g~VkvGD~Vlf 107 (136)
|++.+.|.| --|++|=.+..+ ..+..|.|+.=.|- +|.+||||+|+-
T Consensus 757 V~lhR~ENe---GFGFVi~sS~~k-p~sgiGrIieGSPAdRCgkLkVGDrilA 805 (984)
T KOG3209|consen 757 VVLHRKENE---GFGFVIMSSQNK-PESGIGRIIEGSPADRCGKLKVGDRILA 805 (984)
T ss_pred eEEecccCC---ceeEEEEecccC-CCCCccccccCChhHhhccccccceEEE
Confidence 566665543 357766544332 44567777765553 588999999974
No 162
>TIGR02227 sigpep_I_bact signal peptidase I, bacterial type. A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes.
Probab=26.10 E-value=2.9e+02 Score=20.75 Aligned_cols=41 Identities=17% Similarity=0.271 Sum_probs=24.7
Q ss_pred cCCeEEEEEecC--CCcccceEEeccCccccccceeeEEEEEc
Q 032685 53 QADRVLVRLEQL--PEKSAGGILLPKAAVKFERYLMGEILTVG 93 (136)
Q Consensus 53 LgDRVLVk~~e~--e~~T~gGIiLP~sa~~~ek~~~G~VVAVG 93 (136)
-||+||+.+..- .+-..|-|++=.......+...-+|+++.
T Consensus 36 ~Gd~vlv~k~~~~~~~~~rGDiVvf~~~~~~~~~~iKRVig~p 78 (163)
T TIGR02227 36 EGDRILVNKFAYGTSDPKRGDIVVFKDPDDNKNIYVKRVIGLP 78 (163)
T ss_pred CCCEEEEEEeEcCCCCCCCCcEEEEecCCCCCceeEEEEEecC
Confidence 599999998642 33456777762221111235677888874
No 163
>cd04451 S1_IF1 S1_IF1: Translation Initiation Factor IF1, S1-like RNA-binding domain. IF1 contains an S1-like RNA-binding domain, which is found in a wide variety of RNA-associated proteins. Translation initiation includes a number of interrelated steps preceding the formation of the first peptide bond. In Escherichia coli, the initiation mechanism requires, in addition to mRNA, fMet-tRNA, and ribosomal subunits, the presence of three additional proteins (initiation factors IF1, IF2, and IF3) and at least one GTP molecule. The three initiation factors influence both the kinetics and the stability of ternary complex formation. IF1 is the smallest of the three factors. IF1 enhances the rate of 70S ribosome subunit association and dissociation and the interaction of 30S ribosomal subunit with IF2 and IF3. It stimulates 30S complex formation. In addition, by binding to the A-site of the 30S ribosomal subunit, IF1 may contribute to the fidelity of the selection of the initiation site of th
Probab=25.95 E-value=51 Score=21.08 Aligned_cols=12 Identities=17% Similarity=0.260 Sum_probs=9.9
Q ss_pred cccCCCEEEecC
Q 032685 98 QVNAGKKVLFSD 109 (136)
Q Consensus 98 ~VkvGD~Vlf~~ 109 (136)
.+.+||+|.|..
T Consensus 40 ~~~vGD~V~~~~ 51 (64)
T cd04451 40 RILPGDRVKVEL 51 (64)
T ss_pred ccCCCCEEEEEE
Confidence 378999999983
No 164
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=24.57 E-value=74 Score=21.97 Aligned_cols=12 Identities=25% Similarity=0.501 Sum_probs=9.5
Q ss_pred cccCCCEEEecC
Q 032685 98 QVNAGKKVLFSD 109 (136)
Q Consensus 98 ~VkvGD~Vlf~~ 109 (136)
.|++||+|.|..
T Consensus 20 ~v~~G~~V~~~N 31 (99)
T TIGR02656 20 SIAAGDTVEWVN 31 (99)
T ss_pred EECCCCEEEEEE
Confidence 588999988863
No 165
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=23.94 E-value=1.1e+02 Score=21.17 Aligned_cols=21 Identities=24% Similarity=0.302 Sum_probs=12.7
Q ss_pred cccCCCEEEecC-CCceEEEeC
Q 032685 98 QVNAGKKVLFSD-ISAYEVDLG 118 (136)
Q Consensus 98 ~VkvGD~Vlf~~-y~G~ev~~~ 118 (136)
++++||.|+... .-|+=++++
T Consensus 37 ~L~~Gd~VvT~gGi~G~V~~i~ 58 (84)
T TIGR00739 37 SLKKGDKVLTIGGIIGTVTKIA 58 (84)
T ss_pred hCCCCCEEEECCCeEEEEEEEe
Confidence 477777777754 445445554
No 166
>PRK00276 infA translation initiation factor IF-1; Validated
Probab=23.86 E-value=59 Score=21.61 Aligned_cols=10 Identities=30% Similarity=0.438 Sum_probs=9.2
Q ss_pred ccCCCEEEec
Q 032685 99 VNAGKKVLFS 108 (136)
Q Consensus 99 VkvGD~Vlf~ 108 (136)
+.+||.|.|.
T Consensus 47 i~vGD~V~ve 56 (72)
T PRK00276 47 ILPGDKVTVE 56 (72)
T ss_pred cCCCCEEEEE
Confidence 7899999998
No 167
>PRK10838 spr outer membrane lipoprotein; Provisional
Probab=23.21 E-value=30 Score=27.63 Aligned_cols=35 Identities=29% Similarity=0.494 Sum_probs=22.9
Q ss_pred cceEEeccCccccccceeeEEEEEcCCCCcccCCCEEEecC
Q 032685 69 AGGILLPKAAVKFERYLMGEILTVGADVGQVNAGKKVLFSD 109 (136)
Q Consensus 69 ~gGIiLP~sa~~~ek~~~G~VVAVG~g~g~VkvGD~Vlf~~ 109 (136)
..|+-||.++. +....|+-|. ..++++||.|+|..
T Consensus 105 ~~Gi~LPr~t~--~Q~~~g~~V~----~~~lqpGDLVfF~~ 139 (190)
T PRK10838 105 QFGLELPRSTY--EQQEMGKSVS----RSKLRTGDLVLFRA 139 (190)
T ss_pred hCCCCCCCCHH--HHHhcCcCcc----cCCCCCCcEEEECC
Confidence 36888898775 2233443222 24799999999974
No 168
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=22.94 E-value=3.4e+02 Score=21.77 Aligned_cols=33 Identities=24% Similarity=0.297 Sum_probs=18.1
Q ss_pred EEeccCccccccceeeEEEEEcCCCC-cccCCCEEEe
Q 032685 72 ILLPKAAVKFERYLMGEILTVGADVG-QVNAGKKVLF 107 (136)
Q Consensus 72 IiLP~sa~~~ek~~~G~VVAVG~g~g-~VkvGD~Vlf 107 (136)
+.+|+-. +....|+|+.+--..| .|+.||.+..
T Consensus 5 ~~~p~~~---~~~~~g~~~~~~~~~g~~v~~~~~~~~ 38 (371)
T PRK14875 5 ITMPKWG---LSMTEGKVAGWLVQEGDEVEKGDELLD 38 (371)
T ss_pred EeCCCCC---CCCceEEEEEEEcCCCCEeCCCCEEEE
Confidence 3455544 2345677777665444 3666666553
No 169
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=22.86 E-value=2.7e+02 Score=20.69 Aligned_cols=21 Identities=24% Similarity=0.284 Sum_probs=16.9
Q ss_pred cccCCCEEEecC-CCceEEEeC
Q 032685 98 QVNAGKKVLFSD-ISAYEVDLG 118 (136)
Q Consensus 98 ~VkvGD~Vlf~~-y~G~ev~~~ 118 (136)
.+++||.++|+. +.|+.-..+
T Consensus 85 ~~~aGD~~~~~~G~~g~W~V~E 106 (116)
T COG3450 85 EVRAGDSFVFPAGFKGTWEVLE 106 (116)
T ss_pred EEcCCCEEEECCCCeEEEEEee
Confidence 599999999998 888765444
No 170
>cd03701 IF2_IF5B_II IF2_IF5B_II: This family represents the domain II of prokaryotic Initiation Factor 2 (IF2) and its archeal and eukaryotic homologue aeIF5B. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of the 60S ribosomal subunit. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains in EF1A, eEF1A and aeIF2gamma.
Probab=22.02 E-value=1.1e+02 Score=21.26 Aligned_cols=15 Identities=13% Similarity=0.324 Sum_probs=10.8
Q ss_pred CCcccCCCEEEecCC
Q 032685 96 VGQVNAGKKVLFSDI 110 (136)
Q Consensus 96 ~g~VkvGD~Vlf~~y 110 (136)
+|.+++||.++....
T Consensus 24 ~GtL~~Gd~iv~G~~ 38 (95)
T cd03701 24 NGTLKKGDVIVAGGT 38 (95)
T ss_pred cCeEecCCEEEECCc
Confidence 367888888888663
No 171
>cd03694 GTPBP_II Domain II of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=22.02 E-value=2.5e+02 Score=18.80 Aligned_cols=24 Identities=21% Similarity=0.472 Sum_probs=16.0
Q ss_pred eeEEEEEcC-CCCcccCCCEEEecCC
Q 032685 86 MGEILTVGA-DVGQVNAGKKVLFSDI 110 (136)
Q Consensus 86 ~G~VVAVG~-g~g~VkvGD~Vlf~~y 110 (136)
.|+|+ .|. ..|.+++||.+++.+.
T Consensus 14 ~GtVv-~G~v~~G~v~~g~~v~~~P~ 38 (87)
T cd03694 14 VGTVV-GGTVSKGVIRLGDTLLLGPD 38 (87)
T ss_pred cceEE-EEEEecCEEeCCCEEEECCC
Confidence 35443 343 2478999999998775
No 172
>COG4043 Preprotein translocase subunit Sec61beta [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.56 E-value=59 Score=24.24 Aligned_cols=13 Identities=31% Similarity=0.772 Sum_probs=11.3
Q ss_pred CcccCCCEEEecC
Q 032685 97 GQVNAGKKVLFSD 109 (136)
Q Consensus 97 g~VkvGD~Vlf~~ 109 (136)
..+|+||+++|..
T Consensus 32 r~ik~GD~IiF~~ 44 (111)
T COG4043 32 RQIKPGDKIIFNG 44 (111)
T ss_pred cCCCCCCEEEEcC
Confidence 3699999999985
No 173
>PF02643 DUF192: Uncharacterized ACR, COG1430; InterPro: IPR003795 This entry describes proteins of unknown function.; PDB: 3M7A_B 3PJY_B.
Probab=20.84 E-value=56 Score=23.29 Aligned_cols=22 Identities=18% Similarity=0.222 Sum_probs=13.2
Q ss_pred EEEEEcCCC---CcccCCCEEEecC
Q 032685 88 EILTVGADV---GQVNAGKKVLFSD 109 (136)
Q Consensus 88 ~VVAVG~g~---g~VkvGD~Vlf~~ 109 (136)
.|+++.+|. -.+++||+|.+.+
T Consensus 84 ~vLE~~aG~~~~~~i~~Gd~v~~~~ 108 (108)
T PF02643_consen 84 YVLELPAGWFEKLGIKVGDRVRIEP 108 (108)
T ss_dssp EEEEEETTHHHHHT--TT-EEE---
T ss_pred EEEEcCCCchhhcCCCCCCEEEecC
Confidence 499999984 3699999998753
No 174
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=20.83 E-value=1e+02 Score=24.24 Aligned_cols=22 Identities=18% Similarity=0.377 Sum_probs=17.9
Q ss_pred eeeEEEEEcCCCCcccCCCEEEec
Q 032685 85 LMGEILTVGADVGQVNAGKKVLFS 108 (136)
Q Consensus 85 ~~G~VVAVG~g~g~VkvGD~Vlf~ 108 (136)
..|+|+++| ...+++||+|+..
T Consensus 65 ~~G~v~~~~--~~~~~~Gd~V~~~ 86 (325)
T cd05280 65 AAGTVVSSD--DPRFREGDEVLVT 86 (325)
T ss_pred cEEEEEEeC--CCCCCCCCEEEEc
Confidence 579999994 4578999999964
No 175
>PF00717 Peptidase_S24: Peptidase S24-like peptidase classification. ; InterPro: IPR019759 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ].; PDB: 1KCA_H 3BDN_A 1F39_A 1JHH_A 1JHE_B 3JSP_A 1JHF_B 1JHC_A 3JSO_B 1B12_D ....
Probab=20.82 E-value=1.8e+02 Score=17.92 Aligned_cols=27 Identities=19% Similarity=0.191 Sum_probs=13.4
Q ss_pred eeeEEEEEcCCCCcccCCCEEEecCCCc
Q 032685 85 LMGEILTVGADVGQVNAGKKVLFSDISA 112 (136)
Q Consensus 85 ~~G~VVAVG~g~g~VkvGD~Vlf~~y~G 112 (136)
..|-++-|-+.. .++.||.|+|....+
T Consensus 12 ~~Gd~v~v~~~~-~~~~gdivv~~~~~~ 38 (70)
T PF00717_consen 12 KDGDIVLVDPSS-EPKDGDIVVVKIDGD 38 (70)
T ss_dssp STTEEEEEEETS----TTSEEEEEETTE
T ss_pred eCCCEEEEEEcC-CCccCeEEEEEECCc
Confidence 345555555432 666777777755444
No 176
>cd00165 S4 S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized functional similarity between these three protein classes.
Probab=20.82 E-value=1.4e+02 Score=17.50 Aligned_cols=28 Identities=18% Similarity=0.247 Sum_probs=15.6
Q ss_pred cccCCCEEEecCCC-ceEEEeCCCeeEEEE
Q 032685 98 QVNAGKKVLFSDIS-AYEVDLGADERHCFV 126 (136)
Q Consensus 98 ~VkvGD~Vlf~~y~-G~ev~~~~ge~y~iv 126 (136)
.++.||.|.+..-. ..+|-|+ ++.++++
T Consensus 41 ~v~~~d~i~i~~~~~~~~i~~e-d~~~lvv 69 (70)
T cd00165 41 KVKPGDVIEVDGKSIEEDIVYE-DKKLLVV 69 (70)
T ss_pred CcCCCCEEEEcCCCcccceeec-cCCEEEe
Confidence 46677777765421 1256666 4555554
No 177
>PRK11507 ribosome-associated protein; Provisional
Probab=20.12 E-value=1.6e+02 Score=20.11 Aligned_cols=28 Identities=18% Similarity=0.195 Sum_probs=17.8
Q ss_pred CcccCCCEEEecC----CCceEEEeCCCeeEEE
Q 032685 97 GQVNAGKKVLFSD----ISAYEVDLGADERHCF 125 (136)
Q Consensus 97 g~VkvGD~Vlf~~----y~G~ev~~~~ge~y~i 125 (136)
|.|+++..|-..+ |.|..|+++ |+.|.+
T Consensus 37 g~V~VNGeve~rRgkKl~~GD~V~~~-g~~~~v 68 (70)
T PRK11507 37 GQVKVDGAVETRKRCKIVAGQTVSFA-GHSVQV 68 (70)
T ss_pred CceEECCEEecccCCCCCCCCEEEEC-CEEEEE
Confidence 4566666666643 667777777 566654
No 178
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=20.11 E-value=94 Score=24.93 Aligned_cols=21 Identities=19% Similarity=0.177 Sum_probs=17.2
Q ss_pred eeeEEEEEcCCCCcccCCCEEEec
Q 032685 85 LMGEILTVGADVGQVNAGKKVLFS 108 (136)
Q Consensus 85 ~~G~VVAVG~g~g~VkvGD~Vlf~ 108 (136)
..|+|+++|+ .+++||+|+..
T Consensus 65 ~~g~v~~~~~---~~~~GdrV~~~ 85 (325)
T TIGR02825 65 VARVVESKNV---ALPKGTIVLAS 85 (325)
T ss_pred EEEEEEeCCC---CCCCCCEEEEe
Confidence 5799999874 48999999863
Done!