Query 032686
Match_columns 136
No_of_seqs 111 out of 516
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 07:02:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032686.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032686hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4afi_A AP-3 complex subunit de 100.0 1.5E-42 5.2E-47 257.0 15.8 120 3-123 53-172 (173)
2 4b93_A Vesicle-associated memb 100.0 2.3E-39 8E-44 242.7 15.2 120 3-123 1-120 (189)
3 2vx8_A Nucleoporin-like protei 100.0 5.2E-37 1.8E-41 226.5 12.6 121 3-124 43-163 (169)
4 2nut_C Vesicle-trafficking pro 100.0 2E-31 6.7E-36 200.3 14.5 116 5-122 2-128 (196)
5 3bw6_A Synaptobrevin homolog Y 99.9 3.3E-27 1.1E-31 169.9 11.8 111 6-122 7-137 (144)
6 3kyq_A YKT6, synaptobrevin hom 99.8 1.1E-20 3.9E-25 142.3 11.4 125 3-133 1-150 (199)
7 2fh5_A Signal recognition part 98.1 1.1E-05 3.9E-10 59.6 7.9 112 7-120 13-136 (185)
8 1w63_M Adaptor-related protein 90.9 1.4 4.9E-05 35.6 9.0 91 4-94 1-96 (423)
9 1w63_Q Adapter-related protein 89.8 3.8 0.00013 28.6 10.5 48 47-94 49-96 (158)
10 3tjz_C Coatomer subunit zeta-1 89.2 4.2 0.00014 28.4 11.7 89 4-93 11-105 (153)
11 2vgl_M AP-2 complex subunit MU 87.9 9.5 0.00032 30.8 12.1 48 47-94 47-94 (435)
12 2vgl_S AP-2 complex subunit si 81.9 9.8 0.00034 25.8 11.0 48 47-94 49-96 (142)
13 2fz0_A R-snare NYV1P, V-snare 74.8 11 0.00039 26.2 6.5 57 31-87 50-114 (149)
14 3cue_C Transport protein parti 60.5 40 0.0014 23.5 7.9 58 32-91 51-113 (159)
15 4a4y_A Protein MXIG; protein b 51.9 27 0.00091 23.3 4.6 43 5-59 85-127 (146)
16 2j3t_D Trafficking protein par 39.3 1.1E+02 0.0039 22.5 10.8 88 33-123 119-211 (219)
17 2j3w_A Sedlin, trafficking pro 35.9 99 0.0034 20.8 12.1 114 6-121 7-139 (142)
18 3cue_A Transport protein parti 33.7 1.1E+02 0.0039 22.6 6.1 77 44-121 118-218 (219)
19 4ftx_A Protein SLM4; EGO compl 26.8 1E+02 0.0035 21.8 4.5 49 46-94 96-158 (170)
20 3c01_A Surface presentation of 25.9 94 0.0032 17.4 4.1 41 83-135 4-44 (48)
21 1bm4_A Protein (moloney murine 20.8 76 0.0026 16.4 2.2 17 75-91 12-28 (32)
22 3bzy_A ESCU; auto cleavage pro 20.0 1.4E+02 0.0047 17.2 4.1 41 83-135 10-50 (54)
No 1
>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.5e-42 Score=256.96 Aligned_cols=120 Identities=33% Similarity=0.558 Sum_probs=116.0
Q ss_pred cceeEEEEEEcCCeEEEeeeCCCCCHHHHHHHHhccCCCCCCeEEEEeCCeEEEEEEeCCEEEEEEecCCCCcccHHHHH
Q 032686 3 QKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFL 82 (136)
Q Consensus 3 ~m~I~Ya~Iar~~~iLae~~~~~~nf~~~~~~iL~~l~~~~~k~s~~~~~~~fh~l~~~gi~ylcitd~~~~~~~aF~FL 82 (136)
.|+|+|||||||++|||||+..+|||..+++++|+++|++++|.+++.|+|+|||++++|++||||||+++|+++||+||
T Consensus 53 ~M~I~Ya~VArg~tiLAE~t~~~gnf~~va~~iL~kip~~~~r~t~~~~~y~fHyl~~dgl~yl~i~D~~~~rr~aF~FL 132 (173)
T 4afi_A 53 AMAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFL 132 (173)
T ss_dssp CCCEEEEEEEETTEEEEEEESSCCCHHHHHHHHHTTSCSSSEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHH
T ss_pred cccEEEEEEECCCEEEEEccCCCCCHHHHHHHHHHhCCCCCCeEEEEECCEEEEEEEECCEEEEEEECCccChhHHHHHH
Confidence 48899999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCcchhhHHHHHHHHHHhhH
Q 032686 83 ERVKDEFVSKYGGGKAATAPANGLNKEFGTVLIILRRSASL 123 (136)
Q Consensus 83 ~eI~~~F~~~y~~~~~~~a~~y~~~~~F~~~i~~~m~~~~~ 123 (136)
+||+++|.++|+ .++.+++||+|+++|+++|+++|++||.
T Consensus 133 edI~~eF~~~yg-~~~~ta~pya~~~eF~~~L~~~M~~yn~ 172 (173)
T 4afi_A 133 NEVKKRFQTTYG-SRAQTALPYAMNSEFSSVLAAQLKHHSE 172 (173)
T ss_dssp HHHHHHHHHHHG-GGGGTCCTTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc-hhhhhccCcchhHHHHHHHHHHHHHhcC
Confidence 999999999998 4788899999999999999999999995
No 2
>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A
Probab=100.00 E-value=2.3e-39 Score=242.67 Aligned_cols=120 Identities=33% Similarity=0.559 Sum_probs=115.2
Q ss_pred cceeEEEEEEcCCeEEEeeeCCCCCHHHHHHHHhccCCCCCCeEEEEeCCeEEEEEEeCCEEEEEEecCCCCcccHHHHH
Q 032686 3 QKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFL 82 (136)
Q Consensus 3 ~m~I~Ya~Iar~~~iLae~~~~~~nf~~~~~~iL~~l~~~~~k~s~~~~~~~fh~l~~~gi~ylcitd~~~~~~~aF~FL 82 (136)
.|+|+|||||||++|||||+..+|||.++++++|+++|++++|.||+.|+|+|||++++|++|+||||+++|+++||+||
T Consensus 1 ~M~ilYa~VArg~~iLae~t~~~gnf~~ia~~iL~kip~~~~k~s~~~~~y~fHyl~~~gl~yl~i~d~~yp~r~af~fL 80 (189)
T 4b93_A 1 SMAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFL 80 (189)
T ss_dssp CCSEEEEEEEETTEEEEEEESSEECHHHHHHHHHTTCCSSSEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHH
T ss_pred CCceEEEEEEeCCEEEEeCCCCCCCHHHHHHHHHHhCCCCCCeEEEEECCEEEEEEEeCCeEEEEEEcCccCHHHHHHHH
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCcchhhHHHHHHHHHHhhH
Q 032686 83 ERVKDEFVSKYGGGKAATAPANGLNKEFGTVLIILRRSASL 123 (136)
Q Consensus 83 ~eI~~~F~~~y~~~~~~~a~~y~~~~~F~~~i~~~m~~~~~ 123 (136)
++|+++|..+|+. .+.++.||+++.+|+++|+++|+.|+-
T Consensus 81 ~~i~~eF~~~~~~-~~~~~~~~~~~~~f~~~l~~~~~~y~d 120 (189)
T 4b93_A 81 NEVKKRFQTTYGS-RAQTALPYAMNSEFSSVLAAQLKHHSE 120 (189)
T ss_dssp HHHHHHHHHHHGG-GGGTCCTTTTHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhccc-cccccCCccccchhhHHHHHHHHhhhc
Confidence 9999999999984 567889999999999999999998875
No 3
>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A
Probab=100.00 E-value=5.2e-37 Score=226.51 Aligned_cols=121 Identities=33% Similarity=0.552 Sum_probs=109.6
Q ss_pred cceeEEEEEEcCCeEEEeeeCCCCCHHHHHHHHhccCCCCCCeEEEEeCCeEEEEEEeCCEEEEEEecCCCCcccHHHHH
Q 032686 3 QKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFL 82 (136)
Q Consensus 3 ~m~I~Ya~Iar~~~iLae~~~~~~nf~~~~~~iL~~l~~~~~k~s~~~~~~~fh~l~~~gi~ylcitd~~~~~~~aF~FL 82 (136)
.|+|+|+|||||++|||||++.+|||..+++.+|+++|+.++|.+++.|+|+|||+++||++|+||||+++|+++||+||
T Consensus 43 ~M~ilYa~VaRG~~VLae~t~~~gnf~~iak~ll~kl~~~~~r~s~~~~~y~fHyl~~ngl~yl~I~D~~yp~r~AF~fL 122 (169)
T 2vx8_A 43 GMAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFL 122 (169)
T ss_dssp SSCCCEEEEEETTEEEEEEESSCBSHHHHHHHHHTTSCSSCEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHH
T ss_pred CCceEEEEEEcCCEEEEEeccCCCCHHHHHHHHHhhCCCCCCceEEEECCEEEEEEEECCEEEEEEEccccchHHHHHHH
Confidence 48999999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCcchhhHHHHHHHHHHhhHH
Q 032686 83 ERVKDEFVSKYGGGKAATAPANGLNKEFGTVLIILRRSASLR 124 (136)
Q Consensus 83 ~eI~~~F~~~y~~~~~~~a~~y~~~~~F~~~i~~~m~~~~~~ 124 (136)
++|+++|.++|+. .+.++.||+|+++|++.|++.|++||.+
T Consensus 123 edI~~eF~~~y~~-~~~~a~pysf~~eF~~~Lk~~~~~~~~~ 163 (169)
T 2vx8_A 123 NEVKKRFQTTYGS-RAQTALPYAMNSEFSSVLAAQLKHHSEN 163 (169)
T ss_dssp HHHHHHHHHHHTT-GGGTCCTTTTHHHHHHHHSCC-------
T ss_pred HHHHHHHHHHhhh-hhhccCCcchhHHHHHHHHHHHHHhcCc
Confidence 9999999999985 6777889999999999999999999865
No 4
>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A
Probab=99.97 E-value=2e-31 Score=200.25 Aligned_cols=116 Identities=26% Similarity=0.422 Sum_probs=105.4
Q ss_pred eeEEEEEEcC--CeEEEeeeCCC---CC----HHHHHHHHhccCCC-CCCeEEEEeCCeEEEEEEeCCEEEEEEecCCCC
Q 032686 5 SLIYAFVARG--NVVLAEYTEFS---GN----FNSIAYQCLQKLPA-SNNKFTYNCDAHTFNYLVDNGYTYCVVADESSG 74 (136)
Q Consensus 5 ~I~Ya~Iar~--~~iLae~~~~~---~n----f~~~~~~iL~~l~~-~~~k~s~~~~~~~fh~l~~~gi~ylcitd~~~~ 74 (136)
||+|+||||| ++||||+++.+ |+ |.++++.+|+++|+ .+++.|++.|+|+|||++++|++|+||||+++|
T Consensus 2 Mi~ya~IaR~~d~~iLa~~~d~~~~~~~~~~~~~~~a~~il~ki~~~~~~r~s~~~~~y~fhy~~~~gl~~l~i~d~~yp 81 (196)
T 2nut_C 2 MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQSPTRCTLEAGAMTFHYIIEQGVCYLVLCEAAFP 81 (196)
T ss_dssp CCCCEEEEETTTCCEEEEECCCC-----CHHHHHHHHHHHHHHCCTTSCSEEEEEETTEEEEEEEETTEEEEEEEETTSC
T ss_pred ceEEEEEEEcCCCcEEEEeecccccccccHHHHHHHHHHHHHhcCCCCCCeEEEEeCCEEEEEEeCCCeEEEEEEcCCcc
Confidence 6999999999 79999998743 55 88999999999997 678999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHHhhcCCCCCCC-CCCCCcchhhHHHHHHHHHHhh
Q 032686 75 RQIPMAFLERVKDEFVSKYGGGKAAT-APANGLNKEFGTVLIILRRSAS 122 (136)
Q Consensus 75 ~~~aF~FL~eI~~~F~~~y~~~~~~~-a~~y~~~~~F~~~i~~~m~~~~ 122 (136)
+++||.||++|+++|...|+. .+.+ +.||+|+ +|++.|+++|++|+
T Consensus 82 ~r~af~fL~~i~~~F~~~~~~-~~~~~~~~~~~~-~f~~~l~~~~~~y~ 128 (196)
T 2nut_C 82 KKLAFAYLEDLHSEFDEQHGK-KVPTVSRPYSFI-EFDTFIQKTKKLYI 128 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-TTTTCCSTTTTG-GGHHHHHHHHTTTS
T ss_pred hHHHHHHHHHHHHHHHHhccc-hhccccCCCchH-HHHHHHHHHHHHhc
Confidence 999999999999999999985 4443 6899997 89999999999886
No 5
>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion, snare, coiled coil, lipoprotein, membrane, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 1h8m_A 1iou_A
Probab=99.95 E-value=3.3e-27 Score=169.86 Aligned_cols=111 Identities=16% Similarity=0.152 Sum_probs=94.3
Q ss_pred eEEEEEEcC----CeEEEeeeCCC----------CCH-HHHHHHHhccCCCCCCeEEEEeCCeEEEEE-EeCCEEEEEEe
Q 032686 6 LIYAFVARG----NVVLAEYTEFS----------GNF-NSIAYQCLQKLPASNNKFTYNCDAHTFNYL-VDNGYTYCVVA 69 (136)
Q Consensus 6 I~Ya~Iar~----~~iLae~~~~~----------~nf-~~~~~~iL~~l~~~~~k~s~~~~~~~fh~l-~~~gi~ylcit 69 (136)
|+|.+|+|+ .++|+++++.+ ++| ..+++.|++++|+ ++|.|++.|+|+|||+ ++||++|||||
T Consensus 7 l~~~~v~r~~~~~~~~L~~~~d~s~f~ffqr~sv~ef~~~~ar~i~~r~~~-~~R~sv~~~~y~fH~~~~~~gl~~l~i~ 85 (144)
T 3bw6_A 7 IYYIGVFRSGGEKALELSEVKDLSQFGFFERSSVGQFMTFFAETVASRTGA-GQRQSIEEGNYIGHVYARSEGICGVLIT 85 (144)
T ss_dssp EEEEEEEECCSSSCEEEEEEECCTTSCTTTTTHHHHHHHHHHHHHHHHCCT-TEEEEEEETTEEEEEEECTTSEEEEEEE
T ss_pred EEEEEEEecCCCCCeEeEeeecccccChhhhhhHHHHHHHHHHHHHhhCCC-CceEEEEeCCEEEEEEEecCCEEEEEEE
Confidence 566669997 68999998876 666 7889999999988 5899999999999999 78999999999
Q ss_pred cCCCCcccHHHHHHHHHHHHHhhcCCCCCCC-CC---CCCcchhhHHHHHHHHHHhh
Q 032686 70 DESSGRQIPMAFLERVKDEFVSKYGGGKAAT-AP---ANGLNKEFGTVLIILRRSAS 122 (136)
Q Consensus 70 d~~~~~~~aF~FL~eI~~~F~~~y~~~~~~~-a~---~y~~~~~F~~~i~~~m~~~~ 122 (136)
|++||+++||.||++|+++|.++|+...+.+ +. ||+| +.|++.|+.|+
T Consensus 86 D~~yp~rvAF~~L~~i~~eF~~~y~~~~~~~~~~~~~~~~f-----~~l~~~i~kYq 137 (144)
T 3bw6_A 86 DKEYPVRPAYTLLNKILDEYLVAHPKEEWADVTETNDALKM-----KQLDTYISKYQ 137 (144)
T ss_dssp ETTSCHHHHHHHHHHHHHHHHHHSCGGGTTTCSSCCGGGCC-----THHHHHHHHTS
T ss_pred CCCCChhHHHHHHHHHHHHHHHHccchhhhhcccccCCcch-----HHHHHHHHHhC
Confidence 9999999999999999999999998543665 45 6665 55666666664
No 6
>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus}
Probab=99.84 E-value=1.1e-20 Score=142.26 Aligned_cols=125 Identities=15% Similarity=0.167 Sum_probs=94.5
Q ss_pred cceeEEEEEEc-C-C--eEEEeeeCCC----------CCHHH-HHHHHhccCCCCCCeEEEEeCCeEEE-EEEeCCEEEE
Q 032686 3 QKSLIYAFVAR-G-N--VVLAEYTEFS----------GNFNS-IAYQCLQKLPASNNKFTYNCDAHTFN-YLVDNGYTYC 66 (136)
Q Consensus 3 ~m~I~Ya~Iar-~-~--~iLae~~~~~----------~nf~~-~~~~iL~~l~~~~~k~s~~~~~~~fh-~l~~~gi~yl 66 (136)
+|-|++-.|.+ + + ++|+...+.+ ++|.. +++.+++++|| ++|.|++.|+|+|| |+.+||++|+
T Consensus 1 ~mk~~~~~v~~~~~~~~~~l~~~~dlssf~~f~r~sv~ef~~f~~r~il~r~~~-~~r~s~~~~~y~fH~y~~~~gl~yl 79 (199)
T 3kyq_A 1 LMKLYSLSVFYKGEPKAVLLKAAYDVSSFSFFQRSSVQEFMTFTSQLIVERSAK-GSRASVKEQEYLCHVYVRSDSLAGV 79 (199)
T ss_dssp CCCEEEEEEEEECSSCEEEEEEEECCTTSCTTTHHHHHHHHHHHHHHHHHTSCT-TEEEEEECSSEEEEEEECTTSEEEE
T ss_pred CceEEEEEEEEcCCCCceEEeeecccccccceehHhHHHHHHHHHHHHHhcCCC-CCeEEEEeCCEEEEEEEecCCEEEE
Confidence 35566667776 2 2 6777654432 45544 45689999887 68999999999999 9999999999
Q ss_pred EEecCCCCcccHHHHHHHHHHHHHhhcCCCCCC--CCCCCCcchhhHHHHHHHHHHhh-------HHHHHHhhhhc
Q 032686 67 VVADESSGRQIPMAFLERVKDEFVSKYGGGKAA--TAPANGLNKEFGTVLIILRRSAS-------LRRLRLRFQKS 133 (136)
Q Consensus 67 citd~~~~~~~aF~FL~eI~~~F~~~y~~~~~~--~a~~y~~~~~F~~~i~~~m~~~~-------~~~~~~~~~~~ 133 (136)
||||+++|+++||+||++|+++|.++|+...+. .+.||++ +.|+++|+.|+ +.+++.+++.-
T Consensus 80 ~itd~~yp~r~AF~fL~ei~~eF~~~~~~~~~~~~~~~~~~f-----~~l~~~m~~Y~dp~~~d~l~~~q~el~ev 150 (199)
T 3kyq_A 80 VIADSEYPSRVAFTLLEKVLDEFSKQVDRIDWPVGSPATIHY-----TALDGHLSRYQNPREADPMSKVQAELDET 150 (199)
T ss_dssp EEEETTSCHHHHHHHHHHHHHHHHHHSCGGGSTTCCTTTCCC-----CTHHHHHHHTTSGGGCCCCHHHHHHHHTC
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHhccchhhhccccccccc-----HHHHHHHHHhCCchhhhhHHHHHHHHHHH
Confidence 999999999999999999999999999854453 3466665 34666676664 44666666543
No 7
>2fh5_A Signal recognition particle receptor alpha subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Homo sapiens} SCOP: d.110.4.4 PDB: 2go5_1
Probab=98.10 E-value=1.1e-05 Score=59.63 Aligned_cols=112 Identities=17% Similarity=0.247 Sum_probs=76.4
Q ss_pred EEEEEEcCCeEEEeeeCCCCC----HHHHHHHHhccCCCCCCeEEEEeCCeEEEEEEeC--CEEEEEEecCCCCcccHHH
Q 032686 7 IYAFVARGNVVLAEYTEFSGN----FNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDN--GYTYCVVADESSGRQIPMA 80 (136)
Q Consensus 7 ~Ya~Iar~~~iLae~~~~~~n----f~~~~~~iL~~l~~~~~k~s~~~~~~~fh~l~~~--gi~ylcitd~~~~~~~aF~ 80 (136)
+.+.+.+|++||+.++....+ ...+++.+|-.=.. +..+|..|+|..++..+| |++|++|-..-..-.-.=.
T Consensus 13 ~~~IfTkGGvVLWs~~~~~~~~~~~IN~LIr~VlLEER~--~~~~y~~d~ytlkW~l~NEl~LVFVvVYQ~iL~L~YiD~ 90 (185)
T 2fh5_A 13 FFTIFSKGGLVLWCFQGVSDSCTGPVNALIRSVLLQERG--GNNSFTHEALTLKYKLDNQFELVFVVGFQKILTLTYVDK 90 (185)
T ss_dssp EEEEEETTSBEEEEEBTTTBSCCCHHHHHHHHTGGGC---------CCCCCEEEEEEETTTTEEEEEEESCGGGHHHHHH
T ss_pred EEEEEeCCeEEEEeecCCcccccchHHHHHHHhhhcccc--CCCceeEcCeEEEEEEeccCCEEEEEEEcccccchHHHH
Confidence 678899999999998543323 34566665433221 234688899999999975 5999999888766666668
Q ss_pred HHHHHHHHHHhhcCCCCC--CC----CCCCCcchhhHHHHHHHHHH
Q 032686 81 FLERVKDEFVSKYGGGKA--AT----APANGLNKEFGTVLIILRRS 120 (136)
Q Consensus 81 FL~eI~~~F~~~y~~~~~--~~----a~~y~~~~~F~~~i~~~m~~ 120 (136)
+|++|+..|...|++... .. ..++.|++.|...++++-..
T Consensus 91 LL~~v~~~Fv~~Y~~~L~~~~~~~~~~~~~~Fd~~F~~~l~~~e~~ 136 (185)
T 2fh5_A 91 LIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQNDFLRLLREAEES 136 (185)
T ss_dssp HHHHHHHHHHHHTHHHHHSSSTHHHHSCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcccccccccccCchhHHHHHHHHHHHHH
Confidence 999999999999964311 11 13456778888887776543
No 8
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=90.88 E-value=1.4 Score=35.59 Aligned_cols=91 Identities=12% Similarity=0.143 Sum_probs=59.5
Q ss_pred ceeEEEEEEc--CCeEEEee-eC-CCCC-HHHHHHHHhccCCCCCCeEEEEeCCeEEEEEEeCCEEEEEEecCCCCcccH
Q 032686 4 KSLIYAFVAR--GNVVLAEY-TE-FSGN-FNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIP 78 (136)
Q Consensus 4 m~I~Ya~Iar--~~~iLae~-~~-~~~n-f~~~~~~iL~~l~~~~~k~s~~~~~~~fh~l~~~gi~ylcitd~~~~~~~a 78 (136)
|||...+|.. |.++|+-+ .. ...+ .+..-+.++.+-.+...--..+.+++.|-|...+++.|+|+++.+..--..
T Consensus 1 mMI~~i~I~~~~Gk~~l~k~y~~~~~~~~~~~f~~~v~~~~~~~~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~~ 80 (423)
T 1w63_M 1 MSASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWIKHNNLYLVATSKKNACVSLV 80 (423)
T ss_dssp -CCCEEEEEETTTEECSCBCCSCSCTTTTHHHHHHHHHHHHHTSCCCSEEEETTEEEEEEEETTEEEEEEESSCCCTHHH
T ss_pred CceEEEEEECCCCCEEEEEecCCCCChHHHHHHHHHHhhccccCCCCCEEEECCEEEEEEEECCEEEEEEecCCCCHHHH
Confidence 6666666653 55666643 22 1222 233334444331101111234578999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcC
Q 032686 79 MAFLERVKDEFVSKYG 94 (136)
Q Consensus 79 F~FL~eI~~~F~~~y~ 94 (136)
+.||..+.+-+..-++
T Consensus 81 le~L~~~v~~l~~yf~ 96 (423)
T 1w63_M 81 FSFLYKVVQVFSEYFK 96 (423)
T ss_dssp HHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999988887775
No 9
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=89.81 E-value=3.8 Score=28.65 Aligned_cols=48 Identities=10% Similarity=0.229 Sum_probs=42.2
Q ss_pred EEEeCCeEEEEEEeCCEEEEEEecCCCCcccHHHHHHHHHHHHHhhcC
Q 032686 47 TYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYG 94 (136)
Q Consensus 47 s~~~~~~~fh~l~~~gi~ylcitd~~~~~~~aF~FL~eI~~~F~~~y~ 94 (136)
..+.+++.|-|...+++.|+|+++.+..--..+.||..+-+-+..-++
T Consensus 49 ~i~~~~~~~vy~~~~~Lyfv~~~~~~~Nel~~le~L~~~vevl~~yf~ 96 (158)
T 1w63_Q 49 FLEWRDLKVVYKRYASLYFCCAIEGQDNELITLELIHRYVELLDKYFG 96 (158)
T ss_dssp EEEETTEEEEEEEETTEEEEEEECSSSCHHHHHHHHHHHHHHHHHHHS
T ss_pred eEEECCEEEEEEEECCEEEEEEecCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 345688999999999999999999999999999999998888877776
No 10
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A
Probab=89.25 E-value=4.2 Score=28.42 Aligned_cols=89 Identities=11% Similarity=0.147 Sum_probs=62.6
Q ss_pred ceeEEEEEE--cCCeEEEeeeCCC-CCH---HHHHHHHhccCCCCCCeEEEEeCCeEEEEEEeCCEEEEEEecCCCCccc
Q 032686 4 KSLIYAFVA--RGNVVLAEYTEFS-GNF---NSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQI 77 (136)
Q Consensus 4 m~I~Ya~Ia--r~~~iLae~~~~~-~nf---~~~~~~iL~~l~~~~~k~s~~~~~~~fh~l~~~gi~ylcitd~~~~~~~ 77 (136)
.||..-+|- +|.++|+-+=... .+. ....+.+.+++...++ -....+++.+-|...+++.|+++++.+..--.
T Consensus 11 ~mI~~ililn~~Gk~~lsK~Y~~~~~~~~~~~~~e~~i~~~~~r~~~-~i~~~~~~~~vy~~~~~Lyfv~~~~~~eNel~ 89 (153)
T 3tjz_C 11 YTVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTHRTDS-EIALLEGLTVVYKSSIDLYFYVIGSSYENELM 89 (153)
T ss_dssp BCEEEEEEECTTSCEEEEEECSSSSCSHHHHHHHHHHHHHHHSSCCC-CEEEETTEEEEEEECSSCEEEEEEETTSCHHH
T ss_pred HHheEEEEECCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCC-CEEEECCEEEEEEEECCEEEEEEEcCCCChHH
Confidence 356555555 4778898764321 221 2223334443333233 34567899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhc
Q 032686 78 PMAFLERVKDEFVSKY 93 (136)
Q Consensus 78 aF~FL~eI~~~F~~~y 93 (136)
.+.||..+-+-+..-+
T Consensus 90 ile~L~~~ve~l~~yf 105 (153)
T 3tjz_C 90 LMTVLNCLFDSLSQML 105 (153)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999998888
No 11
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M
Probab=87.89 E-value=9.5 Score=30.79 Aligned_cols=48 Identities=15% Similarity=0.233 Sum_probs=42.9
Q ss_pred EEEeCCeEEEEEEeCCEEEEEEecCCCCcccHHHHHHHHHHHHHhhcC
Q 032686 47 TYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYG 94 (136)
Q Consensus 47 s~~~~~~~fh~l~~~gi~ylcitd~~~~~~~aF~FL~eI~~~F~~~y~ 94 (136)
..+.+++.|-|...+++.|+|+++.+..--..+.||..+.+-+..-++
T Consensus 47 ii~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~~le~L~~~v~vl~~yf~ 94 (435)
T 2vgl_M 47 VTNIARTSFFHVKRSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFG 94 (435)
T ss_dssp EEEETTEEEEEEEETTEEEEEEESSCCCHHHHHHHHHHHHHHHHHHHS
T ss_pred EEEECCEEEEEEEECCEEEEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 456789999999999999999999999999999999999988887776
No 12
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S
Probab=81.89 E-value=9.8 Score=25.82 Aligned_cols=48 Identities=8% Similarity=0.166 Sum_probs=42.8
Q ss_pred EEEeCCeEEEEEEeCCEEEEEEecCCCCcccHHHHHHHHHHHHHhhcC
Q 032686 47 TYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYG 94 (136)
Q Consensus 47 s~~~~~~~fh~l~~~gi~ylcitd~~~~~~~aF~FL~eI~~~F~~~y~ 94 (136)
..+.+++.|-|...+++.|+|+++.+..--..+.||..+-+-+..-+|
T Consensus 49 ~~~~~~~~~vy~~~~~Lyfv~~~~~~~N~l~~le~L~~~ve~l~~yf~ 96 (142)
T 2vgl_S 49 FVEFRNFKIIYRRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFH 96 (142)
T ss_dssp EEEETTEEEEEEEETTEEEEEEECTTSCHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEECCEEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 345689999999999999999999999999999999999998887776
No 13
>2fz0_A R-snare NYV1P, V-snare component of the vacuolar snare complex involved in vesicle fusion; inhibits...; snare protein, longin domain; NMR {Saccharomyces cerevisiae}
Probab=74.84 E-value=11 Score=26.19 Aligned_cols=57 Identities=21% Similarity=0.289 Sum_probs=43.6
Q ss_pred HHHHHhccCCCCC-C---eEEEE-eCCeEEEEEE---eCCEEEEEEecCCCCcccHHHHHHHHHH
Q 032686 31 IAYQCLQKLPASN-N---KFTYN-CDAHTFNYLV---DNGYTYCVVADESSGRQIPMAFLERVKD 87 (136)
Q Consensus 31 ~~~~iL~~l~~~~-~---k~s~~-~~~~~fh~l~---~~gi~ylcitd~~~~~~~aF~FL~eI~~ 87 (136)
+...+|+++-|-+ . |+|.. .|+|-=.|-. ++|.+|+|.+..+.|+-+|-.-|.++++
T Consensus 50 i~dmViPkVV~v~GNKVTKmS~~LIDGyDCYYtT~~~~~~~VlVCFt~~dvPKILPiRlLSeLk~ 114 (149)
T 2fz0_A 50 IMDMVLPKVVPIKGNKVTKMSMNLIDGFDCFYSTDDHDPKTVYVCFTLVDIPKILPIRILSGLQE 114 (149)
T ss_dssp HHHTTGGGCCCCSSCSSEECCSCCSSSEEEEECCCSSCTTEEEEEEEETTSCSSHHHHHHHHHTT
T ss_pred HHheecceEEecCCCeEEEEeeeccccceeeeeccCCCCCeEEEEEEecCCcccccHHHHhhhcc
Confidence 4455688876532 2 34333 5788877777 5678999999999999999999999986
No 14
>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=60.45 E-value=40 Score=23.48 Aligned_cols=58 Identities=14% Similarity=0.134 Sum_probs=41.7
Q ss_pred HHHHhccCCCC---CCeEEEEeCCeEEEEEE-eCCEEEEEEecCCCCcccHHHHHHHHHH-HHHh
Q 032686 32 AYQCLQKLPAS---NNKFTYNCDAHTFNYLV-DNGYTYCVVADESSGRQIPMAFLERVKD-EFVS 91 (136)
Q Consensus 32 ~~~iL~~l~~~---~~k~s~~~~~~~fh~l~-~~gi~ylcitd~~~~~~~aF~FL~eI~~-~F~~ 91 (136)
++.+.+++.|. ++-.++..++|-.|+.. -.|+-|++++|...+ -.-.+|.+|.. .|..
T Consensus 51 L~~i~~kls~~~~~~~f~~~~T~~ykl~~~eT~TgiKFvl~td~~~~--~i~~~l~~iy~~lYv~ 113 (159)
T 3cue_C 51 LRSITQKLSKGSVKNDIRSISTGKYRVHTYCTASGLWFVLLSDFKQQ--SYTQVLQYIYSHIYVK 113 (159)
T ss_dssp HHHHHHHSCCSSSCCCEEEEECSSCBEEEECCSSCCEEEEECCSSSS--CTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCCeEEEeeCCEEEEEEEeCCCCEEEEEeCCCcc--hHHHHHHHHHHHHHHH
Confidence 34566777664 35677777888888877 579999999997643 34468888886 6654
No 15
>4a4y_A Protein MXIG; protein binding, FHA domain; 1.57A {Shigella flexneri} PDB: 2xxs_A
Probab=51.93 E-value=27 Score=23.28 Aligned_cols=43 Identities=14% Similarity=0.425 Sum_probs=32.2
Q ss_pred eeEEEEEEcCCeEEEeeeCCCCCHHHHHHHHhccCCCCCCeEEEEeCCeEEEEEE
Q 032686 5 SLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLV 59 (136)
Q Consensus 5 ~I~Ya~Iar~~~iLae~~~~~~nf~~~~~~iL~~l~~~~~k~s~~~~~~~fh~l~ 59 (136)
-|+|-.|++++ +|+++++.|. +|.-+.+.-++++|+..||.-.
T Consensus 85 giiyltiskdn--icqfsdekge----------qidinsqfnsfeydgisfhlkn 127 (146)
T 4a4y_A 85 GIIYLTISKDN--ICQFSDEKGE----------QIDINSQFNSFEYDGISFHLKN 127 (146)
T ss_dssp EEEEEEECTTC--CEEEECTTSC----------EECCCSSSSEEEETTEEEEEEE
T ss_pred cEEEEEEecCc--ceecccccCc----------EeeccccccceeecceEeehhc
Confidence 38888888886 4788887764 3444456678999999999854
No 16
>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A
Probab=39.34 E-value=1.1e+02 Score=22.53 Aligned_cols=88 Identities=11% Similarity=0.056 Sum_probs=56.4
Q ss_pred HHHhccCCCCC---CeEEEEeCCeEEEEEE-eCCEEEEEEecCCCCcccHHHHHHHHHHHHHhhcCCC-CCCCCCCCCcc
Q 032686 33 YQCLQKLPASN---NKFTYNCDAHTFNYLV-DNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGG-KAATAPANGLN 107 (136)
Q Consensus 33 ~~iL~~l~~~~---~k~s~~~~~~~fh~l~-~~gi~ylcitd~~~~~~~aF~FL~eI~~~F~~~y~~~-~~~~a~~y~~~ 107 (136)
..+-+++.|.+ +-.+++.++|..|+.. -.|+-|+.++|.. ..-.-.||.+|.+.|...--.+ =..-..|-. +
T Consensus 119 d~i~~klsp~~~s~g~~~~~T~~ykl~~y~T~TgiKFVLltd~~--~~~ir~~l~~IyelYvd~V~kNPFY~~~~pI~-s 195 (219)
T 2j3t_D 119 FAIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLADPR--QAGIDSLLRKIYEIYSDFALKNPFYSLEMPIR-C 195 (219)
T ss_dssp HHHHHHTCSSSSCCSCSEEEESSCEEEEEECTTSCEEEEEECTT--CCCHHHHHHHHHHHHHHHHTTCTTCCTTSCCC-C
T ss_pred HHHHHHhCCCCCCCCeeEEecCceEEEEEEcCCCCEEEEEecCC--chHHHHHHHHHHHHHHHHhccCCCCCCCCccc-h
Confidence 33455676633 4567778888888777 5689999999986 4455578999998776531101 001112222 3
Q ss_pred hhhHHHHHHHHHHhhH
Q 032686 108 KEFGTVLIILRRSASL 123 (136)
Q Consensus 108 ~~F~~~i~~~m~~~~~ 123 (136)
..|+..++++++.+..
T Consensus 196 ~~Fd~~v~~l~~~~~~ 211 (219)
T 2j3t_D 196 ELFDQNLKLALEVAEK 211 (219)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhc
Confidence 5799999998876543
No 17
>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A
Probab=35.89 E-value=99 Score=20.79 Aligned_cols=114 Identities=12% Similarity=0.086 Sum_probs=64.1
Q ss_pred eEEEEEEcCCeEEEeee--CCCC-----CH----H---HHHHHHhccCCC-CCC---eEEEEeCCeEEEEEE-eCCEEEE
Q 032686 6 LIYAFVARGNVVLAEYT--EFSG-----NF----N---SIAYQCLQKLPA-SNN---KFTYNCDAHTFNYLV-DNGYTYC 66 (136)
Q Consensus 6 I~Ya~Iar~~~iLae~~--~~~~-----nf----~---~~~~~iL~~l~~-~~~---k~s~~~~~~~fh~l~-~~gi~yl 66 (136)
...+.|.|.+.+|-+.. .... +. . -.+..+++++.+ .++ +.++..++|..|+.. -.|+=|+
T Consensus 7 ~~~~Ii~~~~~ply~~~~~~~~~~~~~~~~~l~~~~i~hs~ldiv~~~~~~~~~~~l~~~~~~~~y~v~~~~T~tg~Kfv 86 (142)
T 2j3w_A 7 FYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFNEWFVSAFVTAGHMRFI 86 (142)
T ss_dssp EEEEEECTTSCEEEEEEECCSCCGGGHHHHHHHHHHHHHHHHHHHHHHGGGCSCSEEEEEEEETTEEEEEEECTTCCEEE
T ss_pred EEEEEEeCCCCEEEEEecCCcCcCCccHHHHHHHHHHHHHHHHHHHHhcCCCCcceeEeeecccceEEEEEEcCCCcEEE
Confidence 34467778888887653 2211 11 0 112334444432 222 466666776666555 6789999
Q ss_pred EEecCCCCcccHHHHHHHHHHHHHhhcCCCCCCCCCCCCcchhhHHHHHHHHHHh
Q 032686 67 VVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGTVLIILRRSA 121 (136)
Q Consensus 67 citd~~~~~~~aF~FL~eI~~~F~~~y~~~~~~~a~~y~~~~~F~~~i~~~m~~~ 121 (136)
.++|.. ...-.-.||.+|.+.|...--..=.....|-. +..|+..++++.+.+
T Consensus 87 l~~d~~-~~~~i~~~~~~iy~~Y~~~v~NPfy~~~~pI~-s~~Fd~~v~~~~~~~ 139 (142)
T 2j3w_A 87 MLHDVR-QEDGIKNFFTDVYDLYIKFAMNPFYEPNSPIR-SSAFDRKVQFLGKKH 139 (142)
T ss_dssp EEESSC-CHHHHHHHHHHHHHHHHHHHHSTTCCTTCCCC-CHHHHHHHHHHHHHH
T ss_pred EEeCCC-CcHHHHHHHHHHHHHHHHHhcCCCCCCCCcee-cHHHHHHHHHHHHHh
Confidence 999873 23345578999998776522100001111221 356999999888765
No 18
>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=33.74 E-value=1.1e+02 Score=22.60 Aligned_cols=77 Identities=12% Similarity=0.054 Sum_probs=47.4
Q ss_pred CeEEEEeCCeEEEEEE-eCCEEEEEEecCCCCc----------------------ccHHHHHHHHHHHHHhhcCCC-CCC
Q 032686 44 NKFTYNCDAHTFNYLV-DNGYTYCVVADESSGR----------------------QIPMAFLERVKDEFVSKYGGG-KAA 99 (136)
Q Consensus 44 ~k~s~~~~~~~fh~l~-~~gi~ylcitd~~~~~----------------------~~aF~FL~eI~~~F~~~y~~~-~~~ 99 (136)
+-..+..++|..|+.. -.|+-|++++|...+- ...-.||.+|...|...--.+ =..
T Consensus 118 g~~~~~Td~y~l~~f~T~TGiKFVlltd~~~~~~~~s~~~~~~~~~~~~~s~l~e~~ir~ff~~VYelYvd~VmkNPFY~ 197 (219)
T 3cue_A 118 GLRQLCTDQFTMFIYQTLTGLKFVAISSSVMPQRQPTIATTDKPDRPKSTSNLAIQIADNFLRKVYCLYSDYVMKDPSYS 197 (219)
T ss_dssp SCCEEEESSCEEEEEECTTSCEEEEEESSCC--------------------CHHHHHHHHHHHHHHHHHHHHHHSCTTCC
T ss_pred ceEEEEeCCEEEEEEEcCCCCEEEEEecCCCcccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 3466677777766666 6799999999987622 345689999998777521100 000
Q ss_pred CCCCCCcchhhHHHHHHHHHHh
Q 032686 100 TAPANGLNKEFGTVLIILRRSA 121 (136)
Q Consensus 100 ~a~~y~~~~~F~~~i~~~m~~~ 121 (136)
...|-. ...|+..++++.+.+
T Consensus 198 ~~~pI~-S~~Fd~~V~~~~~~~ 218 (219)
T 3cue_A 198 MEMPIR-SNLFDEKVKKMVENL 218 (219)
T ss_dssp TTSCCC-CHHHHHHHHHHHHHH
T ss_pred CCCccc-cHHHHHHHHHHHHhc
Confidence 011211 346888888877653
No 19
>4ftx_A Protein SLM4; EGO complex, EGO3, TOR signaling, protein binding; 2.10A {Saccharomyces cerevisiae} PDB: 3lgo_A 4fuw_A
Probab=26.80 E-value=1e+02 Score=21.85 Aligned_cols=49 Identities=16% Similarity=0.337 Sum_probs=40.2
Q ss_pred EEEEeC---CeEEEEEEeC-----------CEEEEEEecCCCCcccHHHHHHHHHHHHHhhcC
Q 032686 46 FTYNCD---AHTFNYLVDN-----------GYTYCVVADESSGRQIPMAFLERVKDEFVSKYG 94 (136)
Q Consensus 46 ~s~~~~---~~~fh~l~~~-----------gi~ylcitd~~~~~~~aF~FL~eI~~~F~~~y~ 94 (136)
..|+.+ ..+|+|-+|| ++.-|-|+|.+||--+..-=++..-..|...||
T Consensus 96 Y~~~i~~~~trIYTYEiEDLHaCVAqIP~SDLLLLfIAd~~yPyGLLv~KmK~al~af~dlyG 158 (170)
T 4ftx_A 96 YPVEIDSFKTKIYTYEMEDLHTCVAQIPNSDLLLLFIAEGSFPYGLLVIKIERAMRELTDLFG 158 (170)
T ss_dssp EEEEETTEEEEEEEEEETTEEEEEEECTTSSEEEEEEEETTSCHHHHHHHHHHHHGGGGGGTT
T ss_pred eeEEeccceeEEEEEEhhhhHHHHhcCCCCCeEEEEeecCCCchHHHHHHHHHHHHHHHHHhc
Confidence 444544 3788888887 999999999999998888777888888988888
No 20
>3c01_A Surface presentation of antigens protein SPAS; auto cleavage protein, flagella, ESCU, YSCU, intein, T3SS, M inner membrane, transmembrane; 2.60A {Salmonella typhimurium} SCOP: d.367.1.1
Probab=25.88 E-value=94 Score=17.41 Aligned_cols=41 Identities=17% Similarity=0.200 Sum_probs=28.6
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCcchhhHHHHHHHHHHhhHHHHHHhhhhccC
Q 032686 83 ERVKDEFVSKYGGGKAATAPANGLNKEFGTVLIILRRSASLRRLRLRFQKSKV 135 (136)
Q Consensus 83 ~eI~~~F~~~y~~~~~~~a~~y~~~~~F~~~i~~~m~~~~~~~~~~~~~~~~~ 135 (136)
+||++++..+=|. .+...-++++...-..++.+...-++.|
T Consensus 4 qEvK~E~Ke~EGd------------P~iK~~~R~~~~e~a~~~m~~~Vp~Adv 44 (48)
T 3c01_A 4 EEVKREMKEQEGN------------PEVKSKRREVHMEILSEQVKSDIENSRL 44 (48)
T ss_pred HHHHHHHHhccCC------------HHHHHHHHHHHHHHHHhHHHhcCCCCCE
Confidence 6899999887662 3566667777777777777666666554
No 21
>1bm4_A Protein (moloney murine leukemia virus capsid); moloney murine leukemia virus capsid protein, momlv, MU-MLV, MHR, major homology region; NMR {Synthetic} SCOP: j.47.1.1
Probab=20.77 E-value=76 Score=16.36 Aligned_cols=17 Identities=41% Similarity=0.759 Sum_probs=13.6
Q ss_pred cccHHHHHHHHHHHHHh
Q 032686 75 RQIPMAFLERVKDEFVS 91 (136)
Q Consensus 75 ~~~aF~FL~eI~~~F~~ 91 (136)
..-|-.||+.+...|..
T Consensus 12 ~EsPs~FlerL~eayR~ 28 (32)
T 1bm4_A 12 NESPSAFLERLKEAYRR 28 (32)
T ss_dssp GGHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHh
Confidence 34588999999999863
No 22
>3bzy_A ESCU; auto cleavage protein, flagella, intein, T3SS, membrane, membrane protein, protein transport; 1.20A {Escherichia coli} SCOP: d.367.1.1 PDB: 3bzl_A 3bzv_A 3bzx_A 3bzo_A 3bzz_A 3c03_B 3c00_A
Probab=20.01 E-value=1.4e+02 Score=17.16 Aligned_cols=41 Identities=27% Similarity=0.188 Sum_probs=28.2
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCcchhhHHHHHHHHHHhhHHHHHHhhhhccC
Q 032686 83 ERVKDEFVSKYGGGKAATAPANGLNKEFGTVLIILRRSASLRRLRLRFQKSKV 135 (136)
Q Consensus 83 ~eI~~~F~~~y~~~~~~~a~~y~~~~~F~~~i~~~m~~~~~~~~~~~~~~~~~ 135 (136)
+||++++..+=| +.+...-++++...-..++.+...-++.|
T Consensus 10 qEvK~E~Ke~EG------------dP~iK~r~R~~~re~a~~~m~~~Vp~Adv 50 (54)
T 3bzy_A 10 DEVKREAKDTDG------------NPEIKGERRRLHSEIQSGSLANNIKKSTV 50 (54)
T ss_pred HHHHHHHHhccC------------CHHHHHHHHHHHHHHHHhHHHhcCCCCCE
Confidence 688999987766 23566667777777777776666655554
Done!