BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032687
(136 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HBD|A Chain A, Class Iv Chitinase Structure From Picea Abies At 1.8a
pdb|3HBE|X Chain X, Class Iv Chitinase Structure From Picea Abies At 1.55a
pdb|3HBH|A Chain A, Class Iv Chitinase Structure From Picea Abies At 2.25a
Length = 204
Score = 136 bits (343), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 68/137 (49%), Positives = 90/137 (65%), Gaps = 6/137 (4%)
Query: 4 LCYVEEINKYNRYCDEQNQQYPCVPGKFYYGRGPIQLTGNGDYGAAGKAIGFDGLRAPET 63
LCY+ E N YC + + +PC GK Y+GRGP+QL+ N +YGAAGK+IGFDGL PE
Sbjct: 70 LCYINEKNPPINYC-QSSSTWPCTSGKSYHGRGPLQLSWNYNYGAAGKSIGFDGLNNPEK 128
Query: 64 VARDPVVSFKTALWFWM--TYVHPVMN--QGFGATIQRINGAIECGGKQPAQVQARNGYY 119
V +D +SFKTA+WFWM + H + QGFG TI+ IN ++EC G +V +R YY
Sbjct: 129 VGQDSTISFKTAVWFWMKNSNCHSAITSGQGFGGTIKAIN-SMECNGGNSGEVSSRVNYY 187
Query: 120 KDYCNKFGVAPGPNLYC 136
K C++ GV PG N+ C
Sbjct: 188 KKICSQLGVDPGANVSC 204
>pdb|2Z37|A Chain A, Crystal Structure Of Brassica Juncea Chitinase Catalytic
Module (Bjchi3)
pdb|2Z37|B Chain B, Crystal Structure Of Brassica Juncea Chitinase Catalytic
Module (Bjchi3)
pdb|2Z37|C Chain C, Crystal Structure Of Brassica Juncea Chitinase Catalytic
Module (Bjchi3)
pdb|2Z37|D Chain D, Crystal Structure Of Brassica Juncea Chitinase Catalytic
Module (Bjchi3)
Length = 244
Score = 135 bits (340), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 65/153 (42%), Positives = 89/153 (58%), Gaps = 21/153 (13%)
Query: 5 CYVEEINKYNRYCDEQNQQYPCVPGKFYYGRGPIQLTGNGDYGAAGKAIGFDGLRAPETV 64
CY EEI+K + +CD N ++PC PGKFYYGRGP+ L+ N +YG G+ +G + L+ P+
Sbjct: 85 CYKEEIDKSDPHCDSNNLEWPCAPGKFYYGRGPMMLSWNYNYGPCGRDLGLELLKNPDVA 144
Query: 65 ARDPVVSFKTALWFWMT------YVHPVMNQ---------------GFGATIQRINGAIE 103
+ DPV++FKTA+WFWMT H V+ G+G ING +E
Sbjct: 145 SSDPVIAFKTAIWFWMTPQAPKPSCHDVITDQWEPSAADISAGRLPGYGVITNIINGGLE 204
Query: 104 CGGKQPAQVQARNGYYKDYCNKFGVAPGPNLYC 136
C G+ A+VQ R +Y YC FGV PG N+ C
Sbjct: 205 CAGRDVAKVQDRISFYTRYCGMFGVDPGSNIDC 237
>pdb|2Z38|A Chain A, Crystal Structure Of Chloride Bound Brassica Juncea
Chitinase Catalytic Module (Bjchi3)
Length = 247
Score = 135 bits (340), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 65/153 (42%), Positives = 89/153 (58%), Gaps = 21/153 (13%)
Query: 5 CYVEEINKYNRYCDEQNQQYPCVPGKFYYGRGPIQLTGNGDYGAAGKAIGFDGLRAPETV 64
CY EEI+K + +CD N ++PC PGKFYYGRGP+ L+ N +YG G+ +G + L+ P+
Sbjct: 88 CYKEEIDKSDPHCDSNNLEWPCAPGKFYYGRGPMMLSWNYNYGPCGRDLGLELLKNPDVA 147
Query: 65 ARDPVVSFKTALWFWMT------YVHPVMNQ---------------GFGATIQRINGAIE 103
+ DPV++FKTA+WFWMT H V+ G+G ING +E
Sbjct: 148 SSDPVIAFKTAIWFWMTPQAPKPSCHDVITDQWEPSAADISAGRLPGYGVITNIINGGLE 207
Query: 104 CGGKQPAQVQARNGYYKDYCNKFGVAPGPNLYC 136
C G+ A+VQ R +Y YC FGV PG N+ C
Sbjct: 208 CAGRDVAKVQDRISFYTRYCGMFGVDPGSNIDC 240
>pdb|2Z39|A Chain A, Crystal Structure Of Brassica Juncea Chitinase Catalytic
Module Glu234ala Mutant (bjchi3-e234a)
pdb|2Z39|B Chain B, Crystal Structure Of Brassica Juncea Chitinase Catalytic
Module Glu234ala Mutant (bjchi3-e234a)
Length = 246
Score = 133 bits (334), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 64/153 (41%), Positives = 88/153 (57%), Gaps = 21/153 (13%)
Query: 5 CYVEEINKYNRYCDEQNQQYPCVPGKFYYGRGPIQLTGNGDYGAAGKAIGFDGLRAPETV 64
CY E I+K + +CD N ++PC PGKFYYGRGP+ L+ N +YG G+ +G + L+ P+
Sbjct: 87 CYKEAIDKSDPHCDSNNLEWPCAPGKFYYGRGPMMLSWNYNYGPCGRDLGLELLKNPDVA 146
Query: 65 ARDPVVSFKTALWFWMT------YVHPVMNQ---------------GFGATIQRINGAIE 103
+ DPV++FKTA+WFWMT H V+ G+G ING +E
Sbjct: 147 SSDPVIAFKTAIWFWMTPQAPKPSCHDVITDQWEPSAADISAGRLPGYGVITNIINGGLE 206
Query: 104 CGGKQPAQVQARNGYYKDYCNKFGVAPGPNLYC 136
C G+ A+VQ R +Y YC FGV PG N+ C
Sbjct: 207 CAGRDVAKVQDRISFYTRYCGMFGVDPGSNIDC 239
>pdb|3W3E|A Chain A, Structure Of Vigna Unguiculata Chitinase With Regulation
Activity Of The Plant Cell Wall
pdb|3W3E|B Chain B, Structure Of Vigna Unguiculata Chitinase With Regulation
Activity Of The Plant Cell Wall
Length = 242
Score = 130 bits (326), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 77/154 (50%), Positives = 89/154 (57%), Gaps = 26/154 (16%)
Query: 5 CYVEEINKYNRYCDEQNQQYPCVPGKFYYGRGPIQLTGNGDYGAAGKAIGFDGLRAPETV 64
C+V E +K NRYCD PC GK YYGRGPIQLT N +Y AAG+A+G D + P+ V
Sbjct: 86 CFVTERDKSNRYCDGSG---PCSAGKSYYGRGPIQLTHNYNYNAAGRALGVDLINNPDLV 142
Query: 65 ARDPVVSFKTALWFWMT------YVHPVMNQ---------------GFGATIQRINGAIE 103
ARD VVSFKTALWFWMT H V+ GFG ING +E
Sbjct: 143 ARDAVVSFKTALWFWMTPQGNKPSCHDVITNRWTPSAADKAANRVPGFGVITNIINGGLE 202
Query: 104 CG-GKQPAQVQARNGYYKDYCNKFGVAPGPNLYC 136
CG G PA R G+YK YC+ FGV+ GPNL C
Sbjct: 203 CGKGPTPASGD-RIGFYKRYCDVFGVSYGPNLNC 235
>pdb|4DWX|A Chain A, Crystal Structure Of A Family Gh-19 Chitinase From Rye
Seeds
pdb|4DWX|B Chain B, Crystal Structure Of A Family Gh-19 Chitinase From Rye
Seeds
pdb|4DYG|A Chain A, Crystal Structure Of A Family Gh-19 Chitinase From Rye
Seeds In Complex With (Glcnac)4
pdb|4DYG|B Chain B, Crystal Structure Of A Family Gh-19 Chitinase From Rye
Seeds In Complex With (Glcnac)4
Length = 244
Score = 127 bits (320), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 72/153 (47%), Positives = 86/153 (56%), Gaps = 22/153 (14%)
Query: 5 CYVEEINKYNRYCDEQNQQYPCVPGKFYYGRGPIQLTGNGDYGAAGKAIGFDGLRAPETV 64
C+ +E YC + Q+PC PGK YYGRGPIQL+ N +YG AG+AIG D LR P+ V
Sbjct: 86 CFKQERGAAADYC-TPSAQWPCAPGKRYYGRGPIQLSHNYNYGPAGRAIGVDLLRNPDLV 144
Query: 65 ARDPVVSFKTALWFWMT------YVHPVMN---------------QGFGATIQRINGAIE 103
A DP VSFKTALWFWMT H V+ GFG ING +E
Sbjct: 145 ATDPTVSFKTALWFWMTAQAPKPSSHAVITGKWSPSGADRAAGRAPGFGVITNIINGGLE 204
Query: 104 CGGKQPAQVQARNGYYKDYCNKFGVAPGPNLYC 136
CG Q ++V R G+YK YC+ GV G NL C
Sbjct: 205 CGHGQDSRVADRIGFYKRYCDILGVGYGDNLDC 237
>pdb|1CNS|A Chain A, Crystal Structure Of Chitinase At 1.91a Resolution
pdb|1CNS|B Chain B, Crystal Structure Of Chitinase At 1.91a Resolution
Length = 243
Score = 122 bits (306), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 70/153 (45%), Positives = 86/153 (56%), Gaps = 22/153 (14%)
Query: 5 CYVEEINKYNRYCDEQNQQYPCVPGKFYYGRGPIQLTGNGDYGAAGKAIGFDGLRAPETV 64
C+ +E + YC + Q+PC PGK YYGRGPIQL+ N +YG AG+AIG D L P+ V
Sbjct: 85 CFKQERGASSDYC-TPSAQWPCAPGKRYYGRGPIQLSHNYNYGPAGRAIGVDLLANPDLV 143
Query: 65 ARDPVVSFKTALWFWMTYVHP-------VMNQ--------------GFGATIQRINGAIE 103
A D VSFKTA+WFWMT P ++ Q GFG ING IE
Sbjct: 144 ATDATVSFKTAMWFWMTAQPPKPSSHAVIVGQWSPSGADRAAGRVPGFGVITNIINGGIE 203
Query: 104 CGGKQPAQVQARNGYYKDYCNKFGVAPGPNLYC 136
CG Q ++V R G+YK YC+ GV G NL C
Sbjct: 204 CGHGQDSRVADRIGFYKRYCDILGVGYGNNLDC 236
>pdb|1DXJ|A Chain A, Structure Of The Chitinase From Jack Bean
Length = 242
Score = 119 bits (299), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 71/154 (46%), Positives = 86/154 (55%), Gaps = 26/154 (16%)
Query: 5 CYVEEINKYNRYCDEQNQQYPCVPGKFYYGRGPIQLTGNGDYGAAGKAIGFDGLRAPETV 64
C+V E +K N+YCD PC GK YYGRGPIQLT N +Y AG+A+G D + P+ V
Sbjct: 85 CFVTERDKSNKYCDPGT---PCPAGKSYYGRGPIQLTHNYNYAQAGRALGVDLINNPDLV 141
Query: 65 ARDPVVSFKTALWFWMT------YVHPVMNQ---------------GFGATIQRINGAIE 103
ARD V+SFKTA+WFWMT H V+ GFG ING IE
Sbjct: 142 ARDAVISFKTAIWFWMTPQGNKPSCHDVITNRWTPSAADVAANRTPGFGVITNIINGGIE 201
Query: 104 CG-GKQPAQVQARNGYYKDYCNKFGVAPGPNLYC 136
CG G PA R G+YK YC+ ++ GPNL C
Sbjct: 202 CGRGPSPASGD-RIGFYKRYCDVLHLSYGPNLNC 234
>pdb|2BAA|A Chain A, The Refined Crystal Structure Of An Endochitinase From
Hordeum Vulgare L. Seeds To 1.8 Angstroms Resolution
Length = 243
Score = 119 bits (299), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 68/153 (44%), Positives = 83/153 (54%), Gaps = 22/153 (14%)
Query: 5 CYVEEINKYNRYCDEQNQQYPCVPGKFYYGRGPIQLTGNGDYGAAGKAIGFDGLRAPETV 64
C+ +E + YC + Q+PC PGK YYGRGPIQL+ N +YG AG+AIG D L P+ V
Sbjct: 85 CFKQERGASSDYC-TPSAQWPCAPGKRYYGRGPIQLSHNYNYGPAGRAIGVDLLANPDLV 143
Query: 65 ARDPVVSFKTALWFWMTYVHPVMNQ---------------------GFGATIQRINGAIE 103
A D V FKTA+WFWMT P + GFG ING IE
Sbjct: 144 ATDATVGFKTAIWFWMTAQPPKPSSHAVIAGQWSPSGADRAAGRVPGFGVITNIINGGIE 203
Query: 104 CGGKQPAQVQARNGYYKDYCNKFGVAPGPNLYC 136
CG Q ++V R G+YK YC+ GV G NL C
Sbjct: 204 CGHGQDSRVADRIGFYKRYCDILGVGYGNNLDC 236
>pdb|1WVU|A Chain A, Crystal Structure Of Chitinase C From Streptomyces Griseus
Hut6037
pdb|1WVU|B Chain B, Crystal Structure Of Chitinase C From Streptomyces Griseus
Hut6037
pdb|2DBT|A Chain A, Crystal Structure Of Chitinase C From Streptomyces Griseus
Hut6037
pdb|2DBT|B Chain B, Crystal Structure Of Chitinase C From Streptomyces Griseus
Hut6037
pdb|2DBT|C Chain C, Crystal Structure Of Chitinase C From Streptomyces Griseus
Hut6037
Length = 265
Score = 117 bits (292), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 66/145 (45%), Positives = 85/145 (58%), Gaps = 13/145 (8%)
Query: 4 LCYVEEINKYN--RYCDEQNQQYPCVPGKF-YYGRGPIQLTGNGDYGAAGKAIGFDGLRA 60
L Y++E+N+ N YCD Q Y C G+ YYGRGPIQL+ N +Y AAG A+G + L
Sbjct: 122 LFYIKEVNEANYPHYCDTT-QSYGCPAGQAAYYGRGPIQLSWNFNYKAAGDALGINLLAN 180
Query: 61 PETVARDPVVSFKTALWFWMTYVHP---------VMNQGFGATIQRINGAIECGGKQPAQ 111
P V +DP V++KT LW+W + P V N GFG TI+ INGA+EC G PAQ
Sbjct: 181 PYLVEQDPAVAWKTGLWYWNSQNGPGTMTPHNAIVNNAGFGETIRSINGALECNGGNPAQ 240
Query: 112 VQARNGYYKDYCNKFGVAPGPNLYC 136
VQ+R + + G GPNL C
Sbjct: 241 VQSRINKFTQFTQILGTTTGPNLSC 265
>pdb|1WVV|A Chain A, Crystal Structure Of Chitinase C Mutant E147q
pdb|1WVV|B Chain B, Crystal Structure Of Chitinase C Mutant E147q
Length = 265
Score = 117 bits (292), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 66/145 (45%), Positives = 85/145 (58%), Gaps = 13/145 (8%)
Query: 4 LCYVEEINKYN--RYCDEQNQQYPCVPGKF-YYGRGPIQLTGNGDYGAAGKAIGFDGLRA 60
L Y++E+N+ N YCD Q Y C G+ YYGRGPIQL+ N +Y AAG A+G + L
Sbjct: 122 LFYIKEVNEANYPHYCDT-TQSYGCPAGQAAYYGRGPIQLSWNFNYKAAGDALGINLLAN 180
Query: 61 PETVARDPVVSFKTALWFWMTYVHP---------VMNQGFGATIQRINGAIECGGKQPAQ 111
P V +DP V++KT LW+W + P V N GFG TI+ INGA+EC G PAQ
Sbjct: 181 PYLVEQDPAVAWKTGLWYWNSQNGPGTMTPHNAIVNNAGFGETIRSINGALECNGGNPAQ 240
Query: 112 VQARNGYYKDYCNKFGVAPGPNLYC 136
VQ+R + + G GPNL C
Sbjct: 241 VQSRINKFTQFTQILGTTTGPNLSC 265
>pdb|2DKV|A Chain A, Crystal Structure Of Class I Chitinase From Oryza Sativa
L. Japonica
pdb|3IWR|A Chain A, Crystal Structure Of Class I Chitinase From Oryza Sativa
L. Japonica
pdb|3IWR|B Chain B, Crystal Structure Of Class I Chitinase From Oryza Sativa
L. Japonica
Length = 309
Score = 115 bits (287), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/153 (42%), Positives = 85/153 (55%), Gaps = 22/153 (14%)
Query: 5 CYVEEINKYNRYCDEQNQQYPCVPGKFYYGRGPIQLTGNGDYGAAGKAIGFDGLRAPETV 64
C+ +E N + YC + + ++PC PG+ YYGRGPIQL+ N +YG AG+AIG D L P+ V
Sbjct: 141 CFKQEQNPPSDYC-QPSPEWPCAPGRKYYGRGPIQLSFNFNYGPAGRAIGVDLLSNPDLV 199
Query: 65 ARDPVVSFKTALWFWMT------YVHPVMN---------------QGFGATIQRINGAIE 103
A D VSFKTALWFWMT H V+ G+G +NG +E
Sbjct: 200 ATDATVSFKTALWFWMTPQGNKPSSHDVITGRWAPSPADAAAGRAPGYGVITNIVNGGLE 259
Query: 104 CGGKQPAQVQARNGYYKDYCNKFGVAPGPNLYC 136
CG +V R G+Y+ YC FG+ G NL C
Sbjct: 260 CGHGPDDRVANRIGFYQRYCGAFGIGTGGNLDC 292
>pdb|2CJL|A Chain A, Crystal Structure And Enzymatic Properties Of A Bacterial
Family 19 Chitinase Reveal Differences With Plant
Enzymes
pdb|2CJL|B Chain B, Crystal Structure And Enzymatic Properties Of A Bacterial
Family 19 Chitinase Reveal Differences With Plant
Enzymes
Length = 204
Score = 111 bits (277), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/145 (45%), Positives = 81/145 (55%), Gaps = 13/145 (8%)
Query: 4 LCYVEEINKYN--RYCDEQNQQYPCVPGKF-YYGRGPIQLTGNGDYGAAGKAIGFDGLRA 60
L YV E N N YCD +Q Y C G YYGRGP+QL+ N +Y AAG A+G D L
Sbjct: 61 LVYVVEQNTANYPHYCDA-SQPYGCPAGNDKYYGRGPVQLSWNFNYKAAGDALGIDLLNN 119
Query: 61 PETVARDPVVSFKTALWFWMTYVHP---------VMNQGFGATIQRINGAIECGGKQPAQ 111
P+ V D V++KT LW+W T P V GFG TI+ ING++EC G P Q
Sbjct: 120 PDLVQNDSAVAWKTGLWYWNTQTGPGTMTPHDAMVNGAGFGETIRSINGSLECDGGNPGQ 179
Query: 112 VQARNGYYKDYCNKFGVAPGPNLYC 136
VQ+R Y+ + GV PG NL C
Sbjct: 180 VQSRIDNYERFTQLLGVEPGGNLSC 204
>pdb|3CQL|A Chain A, Crystal Structure Of Gh Family 19 Chitinase From Carica
Papaya
pdb|3CQL|B Chain B, Crystal Structure Of Gh Family 19 Chitinase From Carica
Papaya
Length = 243
Score = 110 bits (275), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 64/153 (41%), Positives = 83/153 (54%), Gaps = 22/153 (14%)
Query: 5 CYVEEINKYNRYCDEQNQQYPCVPGKFYYGRGPIQLTGNGDYGAAGKAIGFDGLRAPETV 64
C+++E N + YC + +YPC PGK YYGRGPIQL+ N +YG G+A+ + L P+ V
Sbjct: 85 CFLKERNPSSNYC-APSPRYPCAPGKSYYGRGPIQLSWNYNYGPCGEALRVNLLGNPDLV 143
Query: 65 ARDPVVSFKTALWFWMT------YVHPVMN---------------QGFGATIQRINGAIE 103
A D V+SFKTALWFWMT H V+ G+G ING +E
Sbjct: 144 ATDRVISFKTALWFWMTPQAPKPSCHDVITGRWQPSAADTAAGRLPGYGVITNIINGGLE 203
Query: 104 CGGKQPAQVQARNGYYKDYCNKFGVAPGPNLYC 136
CG QV R G+++ YC GV G NL C
Sbjct: 204 CGKGPNPQVADRIGFFRRYCGILGVGTGNNLDC 236
>pdb|3TTO|A Chain A, Crystal Structure Of Leuconostoc Mesenteroides Nrrl B-1299
N- Terminally Truncated Dextransucrase Dsr-E In
Triclinic Form
pdb|3TTO|B Chain B, Crystal Structure Of Leuconostoc Mesenteroides Nrrl B-1299
N- Terminally Truncated Dextransucrase Dsr-E In
Triclinic Form
pdb|3TTO|C Chain C, Crystal Structure Of Leuconostoc Mesenteroides Nrrl B-1299
N- Terminally Truncated Dextransucrase Dsr-E In
Triclinic Form
pdb|3TTO|D Chain D, Crystal Structure Of Leuconostoc Mesenteroides Nrrl B-1299
N- Terminally Truncated Dextransucrase Dsr-E In
Triclinic Form
pdb|3TTQ|A Chain A, Crystal Structure Of Leuconostoc Mesenteroides Nrrl B-1299
N- Terminally Truncated Dextransucrase Dsr-E In
Orthorhombic Apo-Form At 1.9 Angstrom Resolution
Length = 1108
Score = 30.8 bits (68), Expect = 0.23, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 7/62 (11%)
Query: 29 GKFYYGRGPIQLTGNGDYGAAGKAIGFDGLRAPETVARDPVVSFKTALWFWMTYVHPVMN 88
G YG P+ T N DY G A FD L A + +PVV + W +H +MN
Sbjct: 382 GYLKYGNNPLTPTTNSDYRQPGNA--FDFLLANDVDNSNPVVQAENLNW-----LHYLMN 434
Query: 89 QG 90
G
Sbjct: 435 FG 436
>pdb|1B26|A Chain A, Glutamate Dehydrogenase
pdb|1B26|B Chain B, Glutamate Dehydrogenase
pdb|1B26|C Chain C, Glutamate Dehydrogenase
pdb|1B26|D Chain D, Glutamate Dehydrogenase
pdb|1B26|E Chain E, Glutamate Dehydrogenase
pdb|1B26|F Chain F, Glutamate Dehydrogenase
Length = 416
Score = 28.9 bits (63), Expect = 0.93, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 20/50 (40%), Gaps = 11/50 (22%)
Query: 55 FDGLRAPETVARDP-----------VVSFKTALWFWMTYVHPVMNQGFGA 93
F G R VAR P + AL FWMT+ VMN FG
Sbjct: 54 FTGYRVQHNVARGPAKGGIRYHPDVTLDEVKALAFWMTWKTAVMNLPFGG 103
>pdb|3IKM|A Chain A, Crystal Structure Of Human Mitochondrial Dna Polymerase
Holoenzyme
pdb|3IKM|D Chain D, Crystal Structure Of Human Mitochondrial Dna Polymerase
Holoenzyme
Length = 1172
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 93 ATIQRINGAIECGGKQPAQVQARNGYYKDYCNKF---GVAPGPNL 134
A +Q++ G E K+P + G+Y+ C + PGP+L
Sbjct: 480 ACLQKLKGTTELLPKRPQHLPGHPGWYRKLCPRLDDPAWTPGPSL 524
>pdb|2TMG|A Chain A, Thermotoga Maritima Glutamate Dehydrogenase Mutant S128r,
T158e, N117r, S160e
pdb|2TMG|B Chain B, Thermotoga Maritima Glutamate Dehydrogenase Mutant S128r,
T158e, N117r, S160e
pdb|2TMG|C Chain C, Thermotoga Maritima Glutamate Dehydrogenase Mutant S128r,
T158e, N117r, S160e
pdb|2TMG|D Chain D, Thermotoga Maritima Glutamate Dehydrogenase Mutant S128r,
T158e, N117r, S160e
pdb|2TMG|E Chain E, Thermotoga Maritima Glutamate Dehydrogenase Mutant S128r,
T158e, N117r, S160e
pdb|2TMG|F Chain F, Thermotoga Maritima Glutamate Dehydrogenase Mutant S128r,
T158e, N117r, S160e
Length = 415
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 20/50 (40%), Gaps = 11/50 (22%)
Query: 55 FDGLRAPETVARDP-----------VVSFKTALWFWMTYVHPVMNQGFGA 93
F G R VAR P + AL FWMT+ VMN FG
Sbjct: 53 FTGYRVQHNVARGPAKGGIRYHPDVTLDEVKALAFWMTWKTAVMNLPFGG 102
>pdb|2A79|B Chain B, Mammalian Shaker Kv1.2 Potassium Channel- Beta Subunit
Complex
Length = 499
Score = 27.3 bits (59), Expect = 3.0, Method: Composition-based stats.
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 18 DEQNQQYPCVPGKFYYGRGPIQLTGNGDY---GAAGKAIG 54
DE++ Q+P +P F++ + G GD GK +G
Sbjct: 352 DERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVG 391
>pdb|3LUT|B Chain B, A Structural Model For The Full-Length Shaker Potassium
Channel Kv1.2
Length = 499
Score = 27.3 bits (59), Expect = 3.0, Method: Composition-based stats.
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 18 DEQNQQYPCVPGKFYYGRGPIQLTGNGDY---GAAGKAIG 54
DE++ Q+P +P F++ + G GD GK +G
Sbjct: 352 DERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVG 391
>pdb|3LNM|B Chain B, F233w Mutant Of The Kv2.1 Paddle-Kv1.2 Chimera Channel
pdb|3LNM|D Chain D, F233w Mutant Of The Kv2.1 Paddle-Kv1.2 Chimera Channel
Length = 514
Score = 27.3 bits (59), Expect = 3.0, Method: Composition-based stats.
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 18 DEQNQQYPCVPGKFYYGRGPIQLTGNGDY---GAAGKAIG 54
DE++ Q+P +P F++ + G GD GK +G
Sbjct: 367 DERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVG 406
>pdb|2R9R|B Chain B, Shaker Family Voltage Dependent Potassium Channel
(Kv1.2-Kv2.1 Paddle Chimera Channel) In Association With
Beta Subunit
pdb|2R9R|H Chain H, Shaker Family Voltage Dependent Potassium Channel
(Kv1.2-Kv2.1 Paddle Chimera Channel) In Association With
Beta Subunit
Length = 514
Score = 27.3 bits (59), Expect = 3.0, Method: Composition-based stats.
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 18 DEQNQQYPCVPGKFYYGRGPIQLTGNGDY---GAAGKAIG 54
DE++ Q+P +P F++ + G GD GK +G
Sbjct: 367 DERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVG 406
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.142 0.471
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,001,815
Number of Sequences: 62578
Number of extensions: 209471
Number of successful extensions: 385
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 353
Number of HSP's gapped (non-prelim): 23
length of query: 136
length of database: 14,973,337
effective HSP length: 88
effective length of query: 48
effective length of database: 9,466,473
effective search space: 454390704
effective search space used: 454390704
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)