Query 032687
Match_columns 136
No_of_seqs 113 out of 885
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 04:40:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032687.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032687hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00325 chitinase_glyco_hydro_ 100.0 1.4E-46 3E-51 295.0 7.9 136 1-136 63-230 (230)
2 PF00182 Glyco_hydro_19: Chiti 100.0 5.2E-45 1.1E-49 286.6 8.4 131 5-136 81-232 (232)
3 KOG4742 Predicted chitinase [G 100.0 7.3E-43 1.6E-47 278.6 4.7 134 3-136 143-286 (286)
4 COG3179 Predicted chitinase [G 99.9 9E-27 1.9E-31 176.6 7.7 101 18-126 102-204 (206)
5 cd00442 lysozyme_like lysozyme 99.3 1.9E-12 4.1E-17 90.0 1.8 60 25-84 24-83 (105)
6 KOG3625 Alpha amylase [Carbohy 67.0 4.4 9.6E-05 38.7 2.4 50 35-86 1092-1148(1521)
7 PF02705 K_trans: K+ potassium 49.5 8.6 0.00019 34.2 1.2 66 31-101 225-308 (534)
8 PRK13722 lytic transglycosylas 45.2 1E+02 0.0022 23.3 6.3 79 35-124 62-140 (169)
9 TIGR00794 kup potassium uptake 35.8 22 0.00048 32.6 1.6 66 31-101 262-345 (688)
10 PRK11619 lytic murein transgly 34.3 1.4E+02 0.003 27.1 6.5 46 34-81 517-562 (644)
11 PRK15328 invasion protein IagB 31.9 2.1E+02 0.0045 21.3 6.1 61 33-101 59-119 (160)
12 PF07710 P53_tetramer: P53 tet 27.8 36 0.00078 20.0 1.1 16 37-52 12-27 (42)
13 PF01373 Glyco_hydro_14: Glyco 23.6 39 0.00085 29.1 1.0 30 22-51 163-192 (402)
14 PLN00151 potassium transporter 23.5 38 0.00083 31.8 1.0 67 30-101 367-451 (852)
15 PRK15470 emtA lytic murein end 22.4 3.7E+02 0.008 20.9 6.1 47 34-81 77-123 (203)
16 PF07208 DUF1414: Protein of u 22.1 90 0.0019 18.5 2.1 26 93-126 15-40 (44)
17 PF06771 Desmo_N: Viral Desmop 21.5 23 0.00051 24.0 -0.6 10 38-47 73-82 (86)
18 COG3643 Glutamate formiminotra 20.6 52 0.0011 26.8 1.1 61 1-80 208-282 (302)
No 1
>cd00325 chitinase_glyco_hydro_19 Glycoside hydrolase family 19 chitinase domain. Chitinases are enzymes that catalyze the hydrolysis of the beta-1,4-N-acetyl-D-glucosamine linkages in chitin polymers. Family 19 chitinases are found primarily in plants (classes I, III, and IV), but some are found in bacteria. Class I and II chitinases are similar in their catalytic domains. Class I chitinases have an N-terminal cysteine-rich, chitin-binding domain which is separated from the catalytic domain by a proline and glycine-rich hinge region. Class II chitinases lack both the chitin-binding domain and the hinge region. Class IV chitinases are similar to class I chitinases but they are smaller in size due to certain deletions. Despite any significant sequence homology with lysozymes, structural analysis reveals that family 19 chitinases, together with family 46 chitosanases, are similar to several lysozymes including those from T4-phage and from goose. The structures reveal that the different en
Probab=100.00 E-value=1.4e-46 Score=295.04 Aligned_cols=136 Identities=60% Similarity=1.133 Sum_probs=121.9
Q ss_pred CCCceeeEeecCC-CCcccCCC----------CCCcCCCCCcccccccccccChhHHHHHHHHhCCCCCCCccccccCch
Q 032687 1 MRNLCYVEEINKY-NRYCDEQN----------QQYPCVPGKFYYGRGPIQLTGNGDYGAAGKAIGFDGLRAPETVARDPV 69 (136)
Q Consensus 1 sg~~~y~~E~~~~-~~y~~~~~----------~~~~~~dG~~Y~GRG~iQLTg~~NY~~~~~~~g~dl~~~Pdlva~d~~ 69 (136)
||+|+|++|+... ..||+... ++|||+||++|+|||+|||||++||++|++++++|||+|||+|++||.
T Consensus 63 Tgg~~~~~e~~~~~~g~c~~~e~~~~~~~~~~~~~pc~dG~~Y~GRG~iQLT~~~NY~~~g~~lg~dll~~Pdlva~dp~ 142 (230)
T cd00325 63 TGGGCYIAPDGPYAWGYCDKSETGPPSSYCDPAQWPCAPGKKYYGRGPIQLSWNYNYGPAGKALGFDLLNNPDLVATDPV 142 (230)
T ss_pred CCCCccccccccccCCccccccCCCcccccccCCCCCCcccccccCCceeeeehhhHHHHHHHhCCccccCHHHHhcCch
Confidence 6788888887543 24664421 578999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHh------hhhhhh---------------ccchhhhhhhhcCccccCCCChhhHHHHHHHHHHHHHHcCC
Q 032687 70 VSFKTALWFWMT------YVHPVM---------------NQGFGATIQRINGAIECGGKQPAQVQARNGYYKDYCNKFGV 128 (136)
Q Consensus 70 ~a~~sa~wfW~~------~~~~~~---------------~~~f~~~t~~INGgl~c~~~~~~~~~~R~~~y~~~~~~lgv 128 (136)
+|+++|+||||+ ++|++| .++|+.||+|||||+||.++..+++++|+++|++++++|||
T Consensus 143 ~a~~sA~WfW~t~~~~k~s~h~vi~g~w~p~~~d~a~~~~~gfg~tt~iINGg~EC~~~~~~~~~~Ri~~Y~~~~~~lgv 222 (230)
T cd00325 143 VSFKTAIWFWMTPQGPKPSCHDVITGTWTPSAADTAAGRGPGFGATTNIINGGLECGGGNPDQVQNRIGYYKRYCDMLGV 222 (230)
T ss_pred hhhhhhhhheeeCCCCCCCcceeeccCcCCchhhhhccccCChhhhheeecCCcccCCCCchHHHHHHHHHHHHHHHhCC
Confidence 999999999999 466665 25899999999999999999999999999999999999999
Q ss_pred CCCCCCCC
Q 032687 129 APGPNLYC 136 (136)
Q Consensus 129 ~~g~~l~~ 136 (136)
++|+||+|
T Consensus 223 ~~g~nL~C 230 (230)
T cd00325 223 SPGDNLDC 230 (230)
T ss_pred CCCCCCCC
Confidence 99999999
No 2
>PF00182 Glyco_hydro_19: Chitinase class I; InterPro: IPR000726 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 19 GH19 from CAZY comprises enzymes with only one known activity; chitinase (3.2.1.14 from EC). Chitinases [] are enzymes that catalyse the hydrolysis of the beta-1,4-N-acetyl-D-glucosamine linkages in chitin polymers. Chitinases belong to glycoside hydrolase families 18 or 19 []. Chitinases of family 19 (also known as classes IA or I and IB or II) are enzymes from plants that function in the defence against fungal and insect pathogens by destroying their chitin-containing cell wall. Class IA/I and IB/II enzymes differ in the presence (IA/I) or absence (IB/II) of a N-terminal chitin-binding domain. The catalytic domain of these enzymes consist of about 220 to 230 amino acid residues.; GO: 0004568 chitinase activity, 0006032 chitin catabolic process, 0016998 cell wall macromolecule catabolic process; PDB: 3IWR_A 2DKV_A 3CQL_A 2Z38_A 2Z37_D 2Z39_B 1DXJ_A 1WVU_B 1WVV_B 2DBT_C ....
Probab=100.00 E-value=5.2e-45 Score=286.61 Aligned_cols=131 Identities=56% Similarity=1.079 Sum_probs=100.0
Q ss_pred eeeEeecCCCCcccCCCCCCcCCCCCcccccccccccChhHHHHHHHHhCCCCCCCccccccCchhhhHHHHHHHHh---
Q 032687 5 CYVEEINKYNRYCDEQNQQYPCVPGKFYYGRGPIQLTGNGDYGAAGKAIGFDGLRAPETVARDPVVSFKTALWFWMT--- 81 (136)
Q Consensus 5 ~y~~E~~~~~~y~~~~~~~~~~~dG~~Y~GRG~iQLTg~~NY~~~~~~~g~dl~~~Pdlva~d~~~a~~sa~wfW~~--- 81 (136)
|+.+|......||+.. +++||+||++|+|||+|||||++||++|++++++|||+|||||++||.+|+.+|+||||+
T Consensus 81 c~~~e~~~~~~y~~~~-~~~p~~~g~~Y~GRG~iQLT~~~NY~~~g~~lg~dl~~nP~lv~~d~~~a~~sA~wfW~~~~~ 159 (232)
T PF00182_consen 81 CYKREKGANSDYCNRN-GNYPCGDGKKYYGRGPIQLTWNYNYGAFGEALGLDLLNNPDLVATDPWLAFKSAIWFWMTPQP 159 (232)
T ss_dssp S-SB-SS-SSGG--TT-SSS--TTTTGGS-BTTTTB-SHHHHHHHHHHHTS-TTT-TTHHHH-HHHHHHHHHHHHHHSBT
T ss_pred ccccccCCccccccCc-cCccCCCCCeEecccccccchhhhHHHHHHHhCCccccChHHHHhhHHHHHHhhhhheeecCC
Confidence 3333333334556543 688999999999999999999999999999999999999999999999999999999999
Q ss_pred ---hhhhhhc---------------cchhhhhhhhcCccccCCCChhhHHHHHHHHHHHHHHcCCCCCCCCCC
Q 032687 82 ---YVHPVMN---------------QGFGATIQRINGAIECGGKQPAQVQARNGYYKDYCNKFGVAPGPNLYC 136 (136)
Q Consensus 82 ---~~~~~~~---------------~~f~~~t~~INGgl~c~~~~~~~~~~R~~~y~~~~~~lgv~~g~~l~~ 136 (136)
++|++|. ++|+.|++||||++||.++.+..+++|+.+|++++++|||++|+||+|
T Consensus 160 ~~ps~h~vi~~~w~p~~~~~~~~r~~gfG~t~~iINgg~Ec~~~~~~~~~~Ri~~y~~~~~~~~v~~g~nl~C 232 (232)
T PF00182_consen 160 PKPSCHDVITGQWTPSAADLAAGRVPGFGATTNIINGGLECGGGNTDQVQNRIGYYKRYCDMLGVDPGDNLDC 232 (232)
T ss_dssp TBSSHHHHHTTSS-HHHHHHHTTTTSSHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHT----S----
T ss_pred CccCcchhcccccCCchhhhhhccCCCcchhhhhccCccccCCCCchHHhHHHHHHHHHHHHhCCCCCCCCCC
Confidence 3788772 489999999999999999999999999999999999999999999999
No 3
>KOG4742 consensus Predicted chitinase [General function prediction only]
Probab=100.00 E-value=7.3e-43 Score=278.62 Aligned_cols=134 Identities=60% Similarity=1.115 Sum_probs=122.9
Q ss_pred CceeeEeecC-CCCcccCCCCC-CcCCCCCcccccccccccChhHHHHHHHHhCCCCCCCccccccCchhhhHHHHHHHH
Q 032687 3 NLCYVEEINK-YNRYCDEQNQQ-YPCVPGKFYYGRGPIQLTGNGDYGAAGKAIGFDGLRAPETVARDPVVSFKTALWFWM 80 (136)
Q Consensus 3 ~~~y~~E~~~-~~~y~~~~~~~-~~~~dG~~Y~GRG~iQLTg~~NY~~~~~~~g~dl~~~Pdlva~d~~~a~~sa~wfW~ 80 (136)
+|||.+|+.. ...||+.+++. |||.+|+.|+|||+|||+|+|||+++++.+++|||++||+|+.||.+||++|+||||
T Consensus 143 ~fc~~~e~s~~~~~YC~~s~~~~yPCs~gk~Y~GRG~iQlsWNyNYG~ag~alg~dLL~~Pe~V~~np~lAf~~alWfwm 222 (286)
T KOG4742|consen 143 GFCYKEEISPSSGRYCDASNQITYPCSPGKSYYGRGPIQLSWNYNYGAAGKALGLDLLRNPELVAMNPVLAFKAALWFWM 222 (286)
T ss_pred CcccccccChhhhccCCcccceEeecCCCCcccccCcccccccccccHhHhhcCchhhcCcchhccCchhhhheeeeeec
Confidence 8999999998 56899999877 999999999999999999999999999999999999999999999999999999999
Q ss_pred hhh----hhhh---ccchhhhhhhhcCccccCCCCh-hhHHHHHHHHHHHHHHcCCCCCCCCCC
Q 032687 81 TYV----HPVM---NQGFGATIQRINGAIECGGKQP-AQVQARNGYYKDYCNKFGVAPGPNLYC 136 (136)
Q Consensus 81 ~~~----~~~~---~~~f~~~t~~INGgl~c~~~~~-~~~~~R~~~y~~~~~~lgv~~g~~l~~ 136 (136)
+.. ++.+ .++|+.|+++|||++||..+.. ...++|+.+|+.++++|||.+|+||+|
T Consensus 223 t~~~p~~~~~a~~~~~gFGaTt~~Ing~~EC~~~~~~~~~~~Ri~~y~~~c~~fGv~pG~nLsC 286 (286)
T KOG4742|consen 223 TPVRPVLNDFAAYDTPGFGATTRAINGDLECGGGNLDGVKARRIKYYLAYCGLFGVNPGPNLSC 286 (286)
T ss_pred cCCchhhhhhhcccCCCcchhhhhhccceeccCCCCCcchhHHHHHHHHHHHhhCCCCCCCCCC
Confidence 954 3333 3599999999999999998864 445669999999999999999999999
No 4
>COG3179 Predicted chitinase [General function prediction only]
Probab=99.94 E-value=9e-27 Score=176.59 Aligned_cols=101 Identities=26% Similarity=0.467 Sum_probs=91.2
Q ss_pred cCCCCCCcCCCCCcccccccccccChhHHHHHHHHhCCCCCCCccccccCchhhhHHHHHHHHh-hhhhhhc-cchhhhh
Q 032687 18 DEQNQQYPCVPGKFYYGRGPIQLTGNGDYGAAGKAIGFDGLRAPETVARDPVVSFKTALWFWMT-YVHPVMN-QGFGATI 95 (136)
Q Consensus 18 ~~~~~~~~~~dG~~Y~GRG~iQLTg~~NY~~~~~~~g~dl~~~Pdlva~d~~~a~~sa~wfW~~-~~~~~~~-~~f~~~t 95 (136)
..+|++...+|||+|||||.|||||+.||..+++++++||+.||+++..+ .++.++|+|||.+ .|+..+| +|+..||
T Consensus 102 RlGN~~e~sgDGw~yRgrg~iQiTGrdNY~~~g~alg~dlv~~P~~~~~~-~~~a~~a~wyw~~~g~n~~aD~gd~~~VT 180 (206)
T COG3179 102 RLGNGPEKSGDGWLYRGRGLIQITGRDNYRRCGRALGLDLVANPGQLELD-PHAARVAAWYWKTRGLNALADEGDLVRVT 180 (206)
T ss_pred cccCCCCCCCCceeeccCcceeeecchHHHHHHHhhCCCccCChhhhccC-hHhhhhHHHHHHhccHHHhhccCChhhhh
Confidence 44677777899999999999999999999999999999999999999984 5788999999999 6887775 6899999
Q ss_pred hhhcCccccCCCChhhHHHHHHHHHHHHHHc
Q 032687 96 QRINGAIECGGKQPAQVQARNGYYKDYCNKF 126 (136)
Q Consensus 96 ~~INGgl~c~~~~~~~~~~R~~~y~~~~~~l 126 (136)
++|||| .||+++|.+.|+++..++
T Consensus 181 ~~INGG-------~NG~~dR~~r~~~a~~v~ 204 (206)
T COG3179 181 RKINGG-------LNGLDDRLARYRRASGVL 204 (206)
T ss_pred hhhcCc-------cccHHHHHHHHHHHhccc
Confidence 999999 699999999999987654
No 5
>cd00442 lysozyme_like lysozyme_like domain. This contains several members including Soluble Lytic Transglycosylases (SLT), Goose Egg-White Lysozymes (GEWL), Hen Egg-White Lysozymes (HEWL), chitinases, bacteriophage lambda lysozymes, endolysins, autolysins, and chitosanases. All the members are involved in the hydrolysis of beta-1,4- linked polysaccharides.
Probab=99.25 E-value=1.9e-12 Score=89.99 Aligned_cols=60 Identities=27% Similarity=0.153 Sum_probs=55.6
Q ss_pred cCCCCCcccccccccccChhHHHHHHHHhCCCCCCCccccccCchhhhHHHHHHHHhhhh
Q 032687 25 PCVPGKFYYGRGPIQLTGNGDYGAAGKAIGFDGLRAPETVARDPVVSFKTALWFWMTYVH 84 (136)
Q Consensus 25 ~~~dG~~Y~GRG~iQLTg~~NY~~~~~~~g~dl~~~Pdlva~d~~~a~~sa~wfW~~~~~ 84 (136)
||..|..|.|||+||+||++||...++.++++++.+|++++.+|.+++..+.||||...+
T Consensus 24 ~~~~~~~~~~~G~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~n 83 (105)
T cd00442 24 TLNPGERGYGIGLYQLTSRWSDAYRARGIGLKLLAQLILKLFNPKVQDKQALQQIKNAGA 83 (105)
T ss_pred CCCCCCcccccCceeeeeccCccccccccCcchhcCcchhccCchHHHHHHHHHHHhccC
Confidence 676788999999999999999999999999999999999999999999999999998433
No 6
>KOG3625 consensus Alpha amylase [Carbohydrate transport and metabolism]
Probab=67.02 E-value=4.4 Score=38.66 Aligned_cols=50 Identities=16% Similarity=0.365 Sum_probs=33.6
Q ss_pred cccccccChhHHHHHH-----HHhCCCCCCCcccccc--CchhhhHHHHHHHHhhhhhh
Q 032687 35 RGPIQLTGNGDYGAAG-----KAIGFDGLRAPETVAR--DPVVSFKTALWFWMTYVHPV 86 (136)
Q Consensus 35 RG~iQLTg~~NY~~~~-----~~~g~dl~~~Pdlva~--d~~~a~~sa~wfW~~~~~~~ 86 (136)
||.+=+||||+=.++- ..+.--|+ |.|+.+ .|.+-.+-|.|||+..+-+.
T Consensus 1092 rG~ll~TGRy~EAr~iIlaFa~tlrHGLI--PNLLd~G~~~RyNcRDA~W~wl~~Iq~Y 1148 (1521)
T KOG3625|consen 1092 RGILLITGRYVEARNIILAFAGTLRHGLI--PNLLDEGIYARYNCRDAVWWWLQCIQDY 1148 (1521)
T ss_pred ccceEeecchHHHHHHHHHHHHHhhcccc--chhhhccccccccchHHHHHHHHHHHHH
Confidence 7999999999876543 22222233 555543 57888899999999865543
No 7
>PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members.; GO: 0015079 potassium ion transmembrane transporter activity, 0071805 potassium ion transmembrane transport, 0016020 membrane
Probab=49.45 E-value=8.6 Score=34.19 Aligned_cols=66 Identities=24% Similarity=0.361 Sum_probs=45.1
Q ss_pred cccccccccccChh--------HHHHHHHHhCCCCCCCccccccCchhhhHHHHHHHHh----hhhhhh------ccchh
Q 032687 31 FYYGRGPIQLTGNG--------DYGAAGKAIGFDGLRAPETVARDPVVSFKTALWFWMT----YVHPVM------NQGFG 92 (136)
Q Consensus 31 ~Y~GRG~iQLTg~~--------NY~~~~~~~g~dl~~~Pdlva~d~~~a~~sa~wfW~~----~~~~~~------~~~f~ 92 (136)
...||.+||++|-. ||-.=+.+ +++||+.+. ||-+......++|-- .+...+ .+-|.
T Consensus 225 GHfg~~~Ir~aw~~~V~PaL~LnY~GQgA~----ll~~p~~~~-npFf~~~P~~~~~p~~ilAtlAtIIASQA~Isg~FS 299 (534)
T PF02705_consen 225 GHFGRKPIRIAWFFLVFPALLLNYFGQGAL----LLSHPEAVS-NPFFLLIPEWLLWPMVILATLATIIASQAVISGAFS 299 (534)
T ss_pred ccccchhhhhhHHHHHHHHHHHHHccHHHH----HHcCcchhh-hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 38999999999987 55444444 889998875 688777777667744 122111 45677
Q ss_pred hhhhhhcCc
Q 032687 93 ATIQRINGA 101 (136)
Q Consensus 93 ~~t~~INGg 101 (136)
-+.+.|+=|
T Consensus 300 l~~Qai~Lg 308 (534)
T PF02705_consen 300 LTRQAIQLG 308 (534)
T ss_pred HHHHHHHhC
Confidence 777777754
No 8
>PRK13722 lytic transglycosylase; Provisional
Probab=45.22 E-value=1e+02 Score=23.34 Aligned_cols=79 Identities=16% Similarity=0.328 Sum_probs=41.6
Q ss_pred cccccccChhHHHHHHHHhCCCCCCCccccccCchhhhHHHHHHHHhhhhhhhccchhhhhhhhcCccccCCCChhhHHH
Q 032687 35 RGPIQLTGNGDYGAAGKAIGFDGLRAPETVARDPVVSFKTALWFWMTYVHPVMNQGFGATIQRINGAIECGGKQPAQVQA 114 (136)
Q Consensus 35 RG~iQLTg~~NY~~~~~~~g~dl~~~Pdlva~d~~~a~~sa~wfW~~~~~~~~~~~f~~~t~~INGgl~c~~~~~~~~~~ 114 (136)
.|++||. ...-....+ .|+. |+.+..||.+-+..+.|+-...+.. .+... .....=|.|-.. .......
T Consensus 62 ~GLMQIn-~~~~~~l~~-~gi~----~~~ll~DPc~NI~~Gaw~L~~~~~~-~g~~w-~AvaaYNaG~~~---~~~~~~~ 130 (169)
T PRK13722 62 SGLMQVD-SQHFNELAR-YGIK----PEHLTTDPCMNIYTGAYYLAIAFKK-WGVSW-EAVGAYNAGFRK---TERQNQR 130 (169)
T ss_pred ecCCccc-HHHHHHHHH-cCCC----HHHHccCHHHHHHHHHHHHHHHHHH-cCCch-heeeecCCCCCc---cccchHH
Confidence 7999997 233333333 3432 5555568999999999987664333 22222 233444555210 0122355
Q ss_pred HHHHHHHHHH
Q 032687 115 RNGYYKDYCN 124 (136)
Q Consensus 115 R~~~y~~~~~ 124 (136)
|..+-+++.+
T Consensus 131 r~~Ya~kV~~ 140 (169)
T PRK13722 131 RLAYASEVYR 140 (169)
T ss_pred HHHHHHHHHH
Confidence 5555555544
No 9
>TIGR00794 kup potassium uptake protein. Proteins of the KUP family include the KUP (TrkD) protein of E. coli, a partially sequenced ORF from Lactococcus lactis, high affinity K+ uptake systems (Hak1) of the yeast Debaryomyces occidentalis as well as the fungus, Neurospora crassa, and several homologues in plants. While the E. coli KUP protein is assumed to be a secondary transporter, and uptake is blocked by protonophores such as CCCP (but not arsenate), the energy coupling mechanism has not been defined. However, the N. crassa protein has been shown to be a K+:H+ symporter, establishing that the KUP family consists of secondary carriers. The plant high affinity (20mM) K+ transporter can complement K+ uptake defects in E. coli.
Probab=35.76 E-value=22 Score=32.65 Aligned_cols=66 Identities=20% Similarity=0.202 Sum_probs=44.5
Q ss_pred cccccccccccCh--------hHHHHHHHHhCCCCCCCccccccCchhhhHHHHHHHHh----hhhhh------hccchh
Q 032687 31 FYYGRGPIQLTGN--------GDYGAAGKAIGFDGLRAPETVARDPVVSFKTALWFWMT----YVHPV------MNQGFG 92 (136)
Q Consensus 31 ~Y~GRG~iQLTg~--------~NY~~~~~~~g~dl~~~Pdlva~d~~~a~~sa~wfW~~----~~~~~------~~~~f~ 92 (136)
-..||.+||++|- -||-.=+.+ +++||+.+. ||-+.......+|-- .+..+ |.+-|.
T Consensus 262 GHFg~~~Ir~aw~~~V~P~L~LnY~GQgA~----ll~~p~~~~-NpFf~~~P~~~~~p~~vlAtlAtIIASQA~IsG~FS 336 (688)
T TIGR00794 262 GHFGKLPIQLAWFTFVYPSLILCYIGQAAY----LSKHPEAIK-NPFFLSIPDWALWPLFIIATLAAIIASQAVISGVFS 336 (688)
T ss_pred CCCCcccceeehHHHHHHHHHHHHcchHHH----HhcCcchhc-CcHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999998 455444444 778998765 687777666667743 11111 146688
Q ss_pred hhhhhhcCc
Q 032687 93 ATIQRINGA 101 (136)
Q Consensus 93 ~~t~~INGg 101 (136)
-+.+.|+=|
T Consensus 337 l~~Qai~Lg 345 (688)
T TIGR00794 337 ITSQAVRLG 345 (688)
T ss_pred HHHHHHHhC
Confidence 888888754
No 10
>PRK11619 lytic murein transglycosylase; Provisional
Probab=34.29 E-value=1.4e+02 Score=27.11 Aligned_cols=46 Identities=15% Similarity=0.234 Sum_probs=30.9
Q ss_pred ccccccccChhHHHHHHHHhCCCCCCCccccccCchhhhHHHHHHHHh
Q 032687 34 GRGPIQLTGNGDYGAAGKAIGFDGLRAPETVARDPVVSFKTALWFWMT 81 (136)
Q Consensus 34 GRG~iQLTg~~NY~~~~~~~g~dl~~~Pdlva~d~~~a~~sa~wfW~~ 81 (136)
-+|++||.= ..=+...+.+|++-..+|+.+. ||++.+..+.+|-..
T Consensus 517 A~GLMQimP-~Ta~~~a~~~g~~~~~~~~~l~-dp~~Ni~~G~~yL~~ 562 (644)
T PRK11619 517 ASGLMQIMP-GTATHTVKMFSIPGYSSSSQLL-DPETNINIGTSYLEY 562 (644)
T ss_pred CeeeeeecH-HHHHHHHHHcCCCCCCChhhcC-CHHHHHHHHHHHHHH
Confidence 589999972 2223333556665455676656 799999999988765
No 11
>PRK15328 invasion protein IagB; Provisional
Probab=31.94 E-value=2.1e+02 Score=21.32 Aligned_cols=61 Identities=13% Similarity=0.207 Sum_probs=34.2
Q ss_pred cccccccccChhHHHHHHHHhCCCCCCCccccccCchhhhHHHHHHHHhhhhhhhccchhhhhhhhcCc
Q 032687 33 YGRGPIQLTGNGDYGAAGKAIGFDGLRAPETVARDPVVSFKTALWFWMTYVHPVMNQGFGATIQRINGA 101 (136)
Q Consensus 33 ~GRG~iQLTg~~NY~~~~~~~g~dl~~~Pdlva~d~~~a~~sa~wfW~~~~~~~~~~~f~~~t~~INGg 101 (136)
+-.|++||.- .+...+ +.+|+ ..+++ ..||...+..+.|+-...+. ..+..+. ....=|.|
T Consensus 59 ~d~GLMQIn~-~~~~~l-~~~gv---~~~~l-l~DPc~NI~~Ga~~L~~~~~-~~g~~~~-alaaYNaG 119 (160)
T PRK15328 59 TDLGLMQINS-FHMKRL-KKMGI---SEKQL-LQDPCISVIVGASILSDMMK-IYGYSWE-AVGAYNAG 119 (160)
T ss_pred cccChhhcCH-HHHHHH-HHcCC---ChHHH-hcCHHHHHHHHHHHHHHHHH-HcCChHH-hhhhccCC
Confidence 4579999972 233333 23343 23444 44799999999987764332 2223333 44556665
No 12
>PF07710 P53_tetramer: P53 tetramerisation motif; InterPro: IPR010991 The p53 protein is a tetrameric transcription factor that plays a central role in the prevention of neoplastic transformation []. Oligomerization appears to be essential for the tumour suppressing activity of p53. p53 can be divided into different functional domains: an N-terminal transactivation domain, a proline-rich domain, a DNA-binding domain (IPR008967 from INTERPRO), a tetramerisation domain and a C-terminal regulatory region. The tetramerisation domain of human p53 extends from residues 325 to 356, and has a 4-helical bundle fold. The tetramerisation domain is essential for DNA binding, protein-protein interactions, post-translational modifications, and p53 degradation [].; GO: 0051262 protein tetramerization; PDB: 3Q06_B 1SAL_B 1OLH_B 1AIE_A 1PES_D 1SAK_D 1SAE_B 2J11_D 1PET_A 1OLG_A ....
Probab=27.81 E-value=36 Score=19.99 Aligned_cols=16 Identities=25% Similarity=0.405 Sum_probs=13.6
Q ss_pred cccccChhHHHHHHHH
Q 032687 37 PIQLTGNGDYGAAGKA 52 (136)
Q Consensus 37 ~iQLTg~~NY~~~~~~ 52 (136)
.||+.||.||.-+.+.
T Consensus 12 tL~VrGRe~yE~l~ki 27 (42)
T PF07710_consen 12 TLQVRGRERYEMLKKI 27 (42)
T ss_dssp EEEEESHHHHHHHHHH
T ss_pred EEEEecHHHHHHHHHH
Confidence 3799999999988765
No 13
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=23.63 E-value=39 Score=29.07 Aligned_cols=30 Identities=20% Similarity=0.181 Sum_probs=15.4
Q ss_pred CCCcCCCCCcccccccccccChhHHHHHHH
Q 032687 22 QQYPCVPGKFYYGRGPIQLTGNGDYGAAGK 51 (136)
Q Consensus 22 ~~~~~~dG~~Y~GRG~iQLTg~~NY~~~~~ 51 (136)
..||..+||+|.|+|-.|--=++-=..+.+
T Consensus 163 PSy~~~~gw~~pgiGeFQcYDk~~~~~l~~ 192 (402)
T PF01373_consen 163 PSYPESDGWRFPGIGEFQCYDKYMLASLRA 192 (402)
T ss_dssp S-S-GGGTB-TTS-----B-SHHHHHHHHH
T ss_pred CCCCCCCCCcCCCcceeeeccHHHHHHHHH
Confidence 467778999999999999877765555554
No 14
>PLN00151 potassium transporter; Provisional
Probab=23.50 E-value=38 Score=31.83 Aligned_cols=67 Identities=16% Similarity=0.229 Sum_probs=43.4
Q ss_pred CcccccccccccChh--------HHHHHHHHhCCCCCCCccccccCchhhhHHHHHHHHh----hhhhhh------ccch
Q 032687 30 KFYYGRGPIQLTGNG--------DYGAAGKAIGFDGLRAPETVARDPVVSFKTALWFWMT----YVHPVM------NQGF 91 (136)
Q Consensus 30 ~~Y~GRG~iQLTg~~--------NY~~~~~~~g~dl~~~Pdlva~d~~~a~~sa~wfW~~----~~~~~~------~~~f 91 (136)
--+.||.+|||+|-. ||-.=+.+ |+.||+.+. ||-+.......||-. .+..++ ..-|
T Consensus 367 LGHFg~~sIqiaw~~~V~P~LlL~Y~GQaA~----L~~~p~~~~-npFy~svP~~~~wP~~vlAtlAaIIASQA~ISgtF 441 (852)
T PLN00151 367 LGYFSVRSIQLAFTCLVLPCLLLAYMGQAAY----LMKNPDSAE-QIFFSSVPSSLFWPVFLIANLAALIASRAMTTATF 441 (852)
T ss_pred cCCCCccceeeeehhhHHHHHHHHHcchHHH----HhcCccccc-CcHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 348999999999985 55444444 678898865 587776666777854 111111 3556
Q ss_pred hhhhhhhcCc
Q 032687 92 GATIQRINGA 101 (136)
Q Consensus 92 ~~~t~~INGg 101 (136)
.-+.+.|.=|
T Consensus 442 Sii~Qai~Lg 451 (852)
T PLN00151 442 SCIKQSMALG 451 (852)
T ss_pred HHHHHHHHhC
Confidence 6666666643
No 15
>PRK15470 emtA lytic murein endotransglycosylase E; Provisional
Probab=22.39 E-value=3.7e+02 Score=20.91 Aligned_cols=47 Identities=13% Similarity=0.203 Sum_probs=28.1
Q ss_pred ccccccccChhHHHHHHHHhCCCCCCCccccccCchhhhHHHHHHHHh
Q 032687 34 GRGPIQLTGNGDYGAAGKAIGFDGLRAPETVARDPVVSFKTALWFWMT 81 (136)
Q Consensus 34 GRG~iQLTg~~NY~~~~~~~g~dl~~~Pdlva~d~~~a~~sa~wfW~~ 81 (136)
=+|++||+=.--=+...+.+|+.-..+++.+. ||+..+..+.||...
T Consensus 77 A~GLMQImP~TA~~~~a~~~g~~~~~~~~~L~-dP~~NI~~Ga~YL~~ 123 (203)
T PRK15470 77 AIGLMQLKASTSGRDVYRRMGWSGEPTTSELK-NPERNISMGAAYLNI 123 (203)
T ss_pred CeeeccCCHHHHHHHHHHHcCCCCCCChhhcC-CHHHHHHHHHHHHHH
Confidence 47999998222111122335654333455555 799999999988753
No 16
>PF07208 DUF1414: Protein of unknown function (DUF1414); InterPro: IPR009857 This family consists of several hypothetical bacterial proteins of around 70 residues in length. Members of this family are often referred to as YejL. The function of this family is unknown.; PDB: 2JPQ_A 2JUZ_B 2JUW_B 2QTI_A 2OTA_A 2JR2_A 2JRX_A.
Probab=22.14 E-value=90 Score=18.52 Aligned_cols=26 Identities=8% Similarity=0.218 Sum_probs=19.4
Q ss_pred hhhhhhcCccccCCCChhhHHHHHHHHHHHHHHc
Q 032687 93 ATIQRINGAIECGGKQPAQVQARNGYYKDYCNKF 126 (136)
Q Consensus 93 ~~t~~INGgl~c~~~~~~~~~~R~~~y~~~~~~l 126 (136)
.+|.+||... ..++|...=+++.++|
T Consensus 15 ~vTniln~~V--------~~~qR~~iAe~Fa~AL 40 (44)
T PF07208_consen 15 MVTNILNTSV--------PPAQRQAIAEKFAQAL 40 (44)
T ss_dssp HHHHHHHHCS---------HHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcC--------CHHHHHHHHHHHHHHH
Confidence 3789999863 4588888888888776
No 17
>PF06771 Desmo_N: Viral Desmoplakin N-terminus; InterPro: IPR009615 This entry represents the N terminus of viral desmoplakin. Desmoplakin is a component of mature desmosomes, which are the main adhesive junctions in epithelia and cardiac muscle. Desmoplakin is also essential for the maturation of adherens junctions []. Note that many family members are hypothetical.
Probab=21.46 E-value=23 Score=23.98 Aligned_cols=10 Identities=40% Similarity=0.441 Sum_probs=9.0
Q ss_pred ccccChhHHH
Q 032687 38 IQLTGNGDYG 47 (136)
Q Consensus 38 iQLTg~~NY~ 47 (136)
-|+|++|||.
T Consensus 73 ~~iTHnyNYk 82 (86)
T PF06771_consen 73 KQITHNYNYK 82 (86)
T ss_pred Ccceeeeecc
Confidence 7999999995
No 18
>COG3643 Glutamate formiminotransferase [Amino acid transport and metabolism]
Probab=20.60 E-value=52 Score=26.84 Aligned_cols=61 Identities=20% Similarity=0.256 Sum_probs=35.0
Q ss_pred CCCceeeEeecCCCCcccCCCCCCcCCCCCcccccccccccCh-hHHHHHHHH------------hCCCCCCCccccccC
Q 032687 1 MRNLCYVEEINKYNRYCDEQNQQYPCVPGKFYYGRGPIQLTGN-GDYGAAGKA------------IGFDGLRAPETVARD 67 (136)
Q Consensus 1 sg~~~y~~E~~~~~~y~~~~~~~~~~~dG~~Y~GRG~iQLTg~-~NY~~~~~~------------~g~dl~~~Pdlva~d 67 (136)
||||+|.+-++= --.+||.+|+|=+ -||++..-+ .|+..+ .-|.|---
T Consensus 208 ~GG~~~vkAi~~------------------~L~dk~~vQVSMN~~ny~KtpiyR~fEtiK~EA~Rygv~vv-~sEivGl~ 268 (302)
T COG3643 208 SGGLRFVKAIAV------------------ELKDKGIVQVSMNMTNYEKTPIYRVFETIKMEANRYGVNVV-GSEIVGLV 268 (302)
T ss_pred CCCeeeeeeeee------------------eeccCCeEEEEEeecccccCcHHHHHHHHHHHHHhcCCCcc-cceEeccc
Confidence 678888877742 2567899999966 455543321 144433 34555544
Q ss_pred chhhhH-HHHHHHH
Q 032687 68 PVVSFK-TALWFWM 80 (136)
Q Consensus 68 ~~~a~~-sa~wfW~ 80 (136)
|..|.. ++-+|-.
T Consensus 269 P~~aL~d~~~yYL~ 282 (302)
T COG3643 269 PEQALIDVAKYYLQ 282 (302)
T ss_pred hHHHHHHHHHHHHh
Confidence 666654 4445444
Done!