Query 032689
Match_columns 135
No_of_seqs 143 out of 1071
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 04:41:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032689.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032689hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5078 Ubiquitin-protein liga 100.0 3.2E-48 6.9E-53 273.9 11.3 130 1-130 1-132 (153)
2 KOG0417 Ubiquitin-protein liga 100.0 2.1E-47 4.5E-52 265.0 11.2 122 5-126 2-123 (148)
3 KOG0419 Ubiquitin-protein liga 100.0 1.1E-46 2.3E-51 255.6 9.9 127 1-127 1-127 (152)
4 PTZ00390 ubiquitin-conjugating 100.0 2.8E-43 6.1E-48 250.2 15.1 124 1-126 1-124 (152)
5 PLN00172 ubiquitin conjugating 100.0 1.4E-42 3E-47 245.5 14.7 120 6-125 3-122 (147)
6 KOG0418 Ubiquitin-protein liga 100.0 2E-40 4.4E-45 236.9 11.5 121 1-122 1-125 (200)
7 KOG0425 Ubiquitin-protein liga 100.0 1.8E-39 4E-44 226.0 12.5 122 4-125 5-140 (171)
8 KOG0426 Ubiquitin-protein liga 100.0 1E-39 2.2E-44 221.8 10.8 125 1-125 1-139 (165)
9 KOG0421 Ubiquitin-protein liga 100.0 5.2E-40 1.1E-44 226.0 8.9 123 4-126 29-151 (175)
10 KOG0424 Ubiquitin-protein liga 100.0 2.5E-39 5.5E-44 222.4 10.4 130 1-130 1-137 (158)
11 PF00179 UQ_con: Ubiquitin-con 100.0 2.1E-38 4.5E-43 222.2 11.8 119 8-126 1-121 (140)
12 cd00195 UBCc Ubiquitin-conjuga 100.0 1.8E-37 3.9E-42 217.7 13.8 118 7-124 2-120 (141)
13 smart00212 UBCc Ubiquitin-conj 100.0 5.8E-36 1.3E-40 210.9 13.7 119 7-125 1-121 (145)
14 KOG0427 Ubiquitin conjugating 100.0 1E-35 2.2E-40 202.0 11.7 128 1-129 12-140 (161)
15 KOG0422 Ubiquitin-protein liga 100.0 9.4E-33 2E-37 189.1 10.6 119 5-124 3-123 (153)
16 KOG0420 Ubiquitin-protein liga 100.0 1E-32 2.2E-37 194.9 8.3 123 3-126 27-151 (184)
17 KOG0894 Ubiquitin-protein liga 100.0 1.1E-31 2.3E-36 195.8 12.2 115 1-119 1-121 (244)
18 KOG0423 Ubiquitin-protein liga 100.0 8.3E-33 1.8E-37 195.8 4.1 123 4-126 10-132 (223)
19 KOG0416 Ubiquitin-protein liga 100.0 6.4E-32 1.4E-36 190.6 6.8 128 1-132 1-130 (189)
20 KOG0428 Non-canonical ubiquiti 99.9 3.7E-24 8E-29 159.2 9.9 111 3-116 10-123 (314)
21 KOG0895 Ubiquitin-conjugating 99.8 6.8E-19 1.5E-23 151.6 8.7 122 7-128 854-984 (1101)
22 KOG0429 Ubiquitin-conjugating 99.8 2.8E-18 6E-23 126.1 10.6 115 6-121 21-139 (258)
23 KOG0895 Ubiquitin-conjugating 99.7 1.5E-16 3.4E-21 137.2 11.6 116 4-119 282-408 (1101)
24 KOG0896 Ubiquitin-conjugating 99.6 1.6E-14 3.4E-19 98.9 7.5 127 4-130 5-138 (138)
25 KOG0897 Predicted ubiquitin-co 98.8 2.7E-09 6E-14 71.3 3.5 66 53-118 13-80 (122)
26 PF14461 Prok-E2_B: Prokaryoti 98.8 1.5E-08 3.3E-13 70.4 5.8 68 49-116 34-107 (133)
27 PF08694 UFC1: Ubiquitin-fold 98.7 4.6E-09 1E-13 72.9 2.2 97 4-106 24-135 (161)
28 PF05743 UEV: UEV domain; Int 98.5 4.9E-07 1.1E-11 62.0 7.5 88 30-118 25-120 (121)
29 KOG3357 Uncharacterized conser 98.2 2.2E-06 4.7E-11 59.0 4.5 96 5-106 28-138 (167)
30 KOG2391 Vacuolar sorting prote 97.7 0.00032 7E-09 55.4 9.2 81 40-121 55-143 (365)
31 PF14462 Prok-E2_E: Prokaryoti 97.0 0.011 2.4E-07 40.5 9.0 91 22-115 12-121 (122)
32 PF05773 RWD: RWD domain; Int 96.6 0.009 1.9E-07 39.2 6.3 69 7-76 4-74 (113)
33 PF14457 Prok-E2_A: Prokaryoti 96.5 0.03 6.6E-07 40.2 8.4 63 54-116 56-127 (162)
34 smart00591 RWD domain in RING 95.9 0.076 1.6E-06 34.5 7.5 26 50-75 40-65 (107)
35 PF09765 WD-3: WD-repeat regio 93.7 0.1 2.2E-06 40.9 4.2 86 6-114 101-187 (291)
36 KOG0309 Conserved WD40 repeat- 86.1 4.2 9.1E-05 36.1 7.5 67 7-75 423-491 (1081)
37 KOG4018 Uncharacterized conser 81.8 6.4 0.00014 29.6 6.1 22 52-73 50-71 (215)
38 PF14460 Prok-E2_D: Prokaryoti 76.7 6.1 0.00013 28.5 4.6 42 74-118 90-135 (175)
39 PF06113 BRE: Brain and reprod 72.3 25 0.00054 28.3 7.3 68 33-112 53-123 (333)
40 TIGR03737 PRTRC_B PRTRC system 68.6 7.9 0.00017 29.4 3.7 34 75-112 132-169 (228)
41 smart00340 HALZ homeobox assoc 60.2 8.9 0.00019 21.3 1.9 16 5-20 20-35 (44)
42 cd00421 intradiol_dioxygenase 55.7 21 0.00045 24.9 3.7 26 49-74 64-90 (146)
43 cd03457 intradiol_dioxygenase_ 47.6 32 0.00069 25.2 3.8 26 49-74 85-110 (188)
44 KOG4445 Uncharacterized conser 46.4 28 0.00061 27.7 3.4 25 51-75 45-69 (368)
45 cd03459 3,4-PCD Protocatechuat 42.6 44 0.00095 23.8 3.8 26 49-74 71-101 (158)
46 PF03366 YEATS: YEATS family; 42.4 87 0.0019 19.8 4.8 42 34-77 2-43 (84)
47 KOG0662 Cyclin-dependent kinas 42.3 33 0.00072 25.7 3.1 60 64-123 166-229 (292)
48 PF06113 BRE: Brain and reprod 40.9 41 0.00088 27.1 3.6 25 50-74 305-329 (333)
49 KOG3285 Spindle assembly check 38.6 59 0.0013 23.9 3.9 42 5-46 120-161 (203)
50 KOG0862 Synaptobrevin/VAMP-lik 34.3 54 0.0012 24.7 3.2 70 63-132 45-115 (216)
51 PF00845 Gemini_BL1: Geminivir 31.5 1.2E+02 0.0027 23.4 4.8 47 32-78 101-155 (276)
52 PF04881 Adeno_GP19K: Adenovir 31.1 93 0.002 21.6 3.7 31 29-59 43-74 (139)
53 KOG0177 20S proteasome, regula 31.0 22 0.00049 26.3 0.7 29 84-112 135-163 (200)
54 PHA03200 uracil DNA glycosylas 30.7 56 0.0012 25.3 2.9 58 32-92 81-153 (255)
55 cd05845 Ig2_L1-CAM_like Second 30.3 1.5E+02 0.0031 19.1 4.4 26 48-75 16-41 (95)
56 TIGR02423 protocat_alph protoc 30.3 83 0.0018 23.2 3.6 25 49-73 95-124 (193)
57 PF12065 DUF3545: Protein of u 29.6 42 0.00091 20.0 1.6 12 6-17 36-47 (59)
58 PF13950 Epimerase_Csub: UDP-g 29.4 53 0.0012 19.4 2.1 20 95-114 37-56 (62)
59 COG0544 Tig FKBP-type peptidyl 28.3 1.4E+02 0.003 25.0 5.0 15 52-66 210-224 (441)
60 cd03463 3,4-PCD_alpha Protocat 27.2 1E+02 0.0022 22.5 3.7 24 50-73 92-120 (185)
61 PF00779 BTK: BTK motif; Inte 26.2 23 0.00051 18.4 0.1 14 76-89 2-16 (32)
62 PRK15486 hpaC 4-hydroxyphenyla 25.5 43 0.00093 24.1 1.4 69 9-94 6-77 (170)
63 PF07380 Pneumo_M2: Pneumoviru 23.4 1.8E+02 0.0039 18.5 3.7 57 56-112 6-76 (89)
64 PF14135 DUF4302: Domain of un 23.3 2.6E+02 0.0057 20.9 5.4 15 4-18 9-23 (235)
65 TIGR02296 HpaC 4-hydroxyphenyl 22.9 41 0.0009 23.5 0.9 30 65-94 36-68 (154)
66 KOG1047 Bifunctional leukotrie 22.8 90 0.002 27.1 2.9 29 46-75 248-279 (613)
67 PF05751 FixH: FixH; InterPro 22.5 2.5E+02 0.0055 18.8 5.5 54 7-61 43-96 (146)
68 COG2819 Predicted hydrolase of 21.5 1.6E+02 0.0035 22.9 3.9 29 46-74 16-46 (264)
69 PF02970 TBCA: Tubulin binding 21.4 1E+02 0.0022 19.7 2.4 16 3-18 6-21 (90)
70 PF11745 DUF3304: Protein of u 20.5 48 0.001 22.2 0.8 21 83-103 49-69 (118)
71 KOG2015 NEDD8-activating compl 20.2 3.5E+02 0.0076 22.2 5.6 37 95-132 342-378 (422)
No 1
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-48 Score=273.86 Aligned_cols=130 Identities=51% Similarity=0.962 Sum_probs=122.8
Q ss_pred CChH-HHHHHHHHHHHHhhCCCCCeEEEecCC-CCceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEeccCcc
Q 032689 1 MSTP-AKKRLMRDFKRLQQDPPAGISGAPQDN-NIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFH 78 (135)
Q Consensus 1 Ms~~-a~~Rl~kEl~~l~~~~~~~i~~~~~~~-~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H 78 (135)
|++. |.+||+||++++++++++++++.+.++ |+++|+++|.||++||||||.|++.|.||++||++||+|+|++++||
T Consensus 1 ~~s~~a~~RL~kE~~~l~~~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~H 80 (153)
T COG5078 1 MSSPSALKRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFH 80 (153)
T ss_pred CCchhHHHHHHHHHHHHhcCCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcC
Confidence 4444 999999999999999999999999887 99999999999999999999999999999999999999999999999
Q ss_pred CCccCCCcEEccCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCcccCCcceEE
Q 032689 79 PNIYADGSICLDILQNQWSPIYDVAAILTSIQVKLRFDFSCSFLSIGKRFCF 130 (135)
Q Consensus 79 pnV~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~~~~~~~~~~~~~~~~ 130 (135)
|||+.+|+||+++|++.|+|++++++||.+|++||.+|+++++++.+.-..|
T Consensus 81 PNV~~~G~vCLdIL~~~WsP~~~l~sILlsl~slL~~PN~~~Pln~daa~~~ 132 (153)
T COG5078 81 PNVDPSGNVCLDILKDRWSPVYTLETILLSLQSLLLSPNPDSPLNTEAATLY 132 (153)
T ss_pred CCcCCCCCChhHHHhCCCCccccHHHHHHHHHHHHcCCCCCCCCChHHHHHH
Confidence 9999999999999999999999999999999999999999999987654433
No 2
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-47 Score=264.96 Aligned_cols=122 Identities=43% Similarity=0.853 Sum_probs=118.1
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEeccCccCCccCC
Q 032689 5 AKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYAD 84 (135)
Q Consensus 5 a~~Rl~kEl~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~~ 84 (135)
+.+||.||++++++++++|+++.+.++|+++|+++|.||.|||||||+|++.|.||++||++||+|+|+|+||||||+..
T Consensus 2 a~~RI~kE~~~l~~dp~~~~~~~~~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~~~ 81 (148)
T KOG0417|consen 2 ASKRIIKELQDLLRDPPPGCSAGPVGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNIDSN 81 (148)
T ss_pred cHHHHHHHHHHHhcCCCCCCccCCCCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcCcc
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEccCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCcccCCc
Q 032689 85 GSICLDILQNQWSPIYDVAAILTSIQVKLRFDFSCSFLSIGK 126 (135)
Q Consensus 85 G~icl~~l~~~W~p~~~i~~il~~i~~ll~~~~~~~~~~~~~ 126 (135)
|.||+|+|++.|+|+++|.+||++|++||.+|++++++....
T Consensus 82 G~IclDILk~~WsPAl~i~~VllsI~sLL~~PnpddPL~~~i 123 (148)
T KOG0417|consen 82 GRICLDILKDQWSPALTISKVLLSICSLLSDPNPDDPLVPDI 123 (148)
T ss_pred ccchHHhhhccCChhhHHHHHHHHHHHHhcCCCCCccccHHH
Confidence 999999999999999999999999999999999999987653
No 3
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-46 Score=255.58 Aligned_cols=127 Identities=75% Similarity=1.212 Sum_probs=123.8
Q ss_pred CChHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEeccCccCC
Q 032689 1 MSTPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPN 80 (135)
Q Consensus 1 Ms~~a~~Rl~kEl~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn 80 (135)
||.+|.+||++|+++++++++.|+++.|.++|+++|.++|.||.+|||+||+|++.+.|+++||.+||.|+|++.+||||
T Consensus 1 MstpArrrLmrDfkrlqedpp~gisa~P~~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFHPN 80 (152)
T KOG0419|consen 1 MSTPARRRLMRDFKRLQEDPPAGISAAPVENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFHPN 80 (152)
T ss_pred CCchHHHHHHHHHHHhhcCCCCCccCCCCccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcEEccCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCcccCCcc
Q 032689 81 IYADGSICLDILQNQWSPIYDVAAILTSIQVKLRFDFSCSFLSIGKR 127 (135)
Q Consensus 81 V~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~~~~~~~~~~~~~ 127 (135)
|+.+|.+|+|+|...|+|.+++.+||.+||+||++|+++++++-..-
T Consensus 81 vya~G~iClDiLqNrWsp~Ydva~ILtsiQslL~dPn~~sPaN~eAA 127 (152)
T KOG0419|consen 81 VYADGSICLDILQNRWSPTYDVASILTSIQSLLNDPNPNSPANSEAA 127 (152)
T ss_pred cCCCCcchHHHHhcCCCCchhHHHHHHHHHHHhcCCCCCCcccHHHH
Confidence 99999999999999999999999999999999999999999876543
No 4
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=2.8e-43 Score=250.19 Aligned_cols=124 Identities=40% Similarity=0.764 Sum_probs=119.1
Q ss_pred CChHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEeccCccCC
Q 032689 1 MSTPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPN 80 (135)
Q Consensus 1 Ms~~a~~Rl~kEl~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn 80 (135)
|| +.+||++|++++++++++|+.+.+.++|+++|+++|.||+||||+||.|+++|.||++||++||+|+|.|++||||
T Consensus 1 ~~--~~kRl~~E~~~l~~~~~~~i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPN 78 (152)
T PTZ00390 1 MS--ISKRIEKETQNLANDPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPN 78 (152)
T ss_pred Cc--HHHHHHHHHHHHHhCCCCCeEEEECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeece
Confidence 55 6799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcEEccCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCcccCCc
Q 032689 81 IYADGSICLDILQNQWSPIYDVAAILTSIQVKLRFDFSCSFLSIGK 126 (135)
Q Consensus 81 V~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~~~~~~~~~~~~ 126 (135)
|+.+|.||+++|.++|+|++|+++||++|++||.+|+++++.+...
T Consensus 79 V~~~G~iCl~iL~~~W~p~~ti~~iL~~i~~ll~~P~~~~pln~~a 124 (152)
T PTZ00390 79 IDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPEPDDPLDTSV 124 (152)
T ss_pred ECCCCeEECccCcccCCCCCcHHHHHHHHHHHHhCCCCCCchHHHH
Confidence 9999999999999999999999999999999999999999887543
No 5
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=1.4e-42 Score=245.49 Aligned_cols=120 Identities=44% Similarity=0.843 Sum_probs=116.2
Q ss_pred HHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEeccCccCCccCCC
Q 032689 6 KKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADG 85 (135)
Q Consensus 6 ~~Rl~kEl~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~~G 85 (135)
.+||++|++++++++++|+++.+.++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|++|||||+.+|
T Consensus 3 ~~Rl~kE~~~l~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~~~G 82 (147)
T PLN00172 3 TKRIQKEHKDLLKDPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNINSNG 82 (147)
T ss_pred HHHHHHHHHHHHhCCCCCeEEEECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceECCCC
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEccCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCcccCC
Q 032689 86 SICLDILQNQWSPIYDVAAILTSIQVKLRFDFSCSFLSIG 125 (135)
Q Consensus 86 ~icl~~l~~~W~p~~~i~~il~~i~~ll~~~~~~~~~~~~ 125 (135)
.||+++|.++|+|++++++||.+|+++|.+|+++++.+..
T Consensus 83 ~iCl~il~~~W~p~~ti~~il~~i~~ll~~P~~~~p~n~~ 122 (147)
T PLN00172 83 SICLDILRDQWSPALTVSKVLLSISSLLTDPNPDDPLVPE 122 (147)
T ss_pred EEEcccCcCCCCCcCcHHHHHHHHHHHHhCCCCCCchHHH
Confidence 9999999999999999999999999999999999977643
No 6
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-40 Score=236.93 Aligned_cols=121 Identities=39% Similarity=0.709 Sum_probs=116.8
Q ss_pred CChHHHHHHHHHHHHHhhCC---CCCeEEEecCCCCceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEeccCc
Q 032689 1 MSTPAKKRLMRDFKRLQQDP---PAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMF 77 (135)
Q Consensus 1 Ms~~a~~Rl~kEl~~l~~~~---~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 77 (135)
||. +.+||++|.+++.+++ ..||.++..++|+.+....|.||+|||||||.|.+.|++|++|||+||+|+|.|+||
T Consensus 1 m~~-~~~ri~~e~k~v~~~~eisq~~I~ve~vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIw 79 (200)
T KOG0418|consen 1 MSN-AFKRINREQKEVLDDPEISQAGIIVEMVNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKIW 79 (200)
T ss_pred Ccc-HHHHHHHHHHHhccChhhhhcceEEEEccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeeee
Confidence 888 8999999999999998 669999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcc-CCCcEEccCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCcc
Q 032689 78 HPNIY-ADGSICLDILQNQWSPIYDVAAILTSIQVKLRFDFSCSFL 122 (135)
Q Consensus 78 HpnV~-~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~~~~~~~~ 122 (135)
||||+ .+|.||+|++++.|++++|+.++|++||++|+.|++.++-
T Consensus 80 HPnVSs~tGaICLDilkd~Wa~slTlrtvLislQalL~~pEp~dPq 125 (200)
T KOG0418|consen 80 HPNVSSQTGAICLDILKDQWAASLTLRTVLISLQALLCAPEPKDPQ 125 (200)
T ss_pred cCCCCcccccchhhhhhcccchhhhHHHHHHHHHHHHcCCCCCChH
Confidence 99998 7999999999999999999999999999999999998764
No 7
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-39 Score=226.03 Aligned_cols=122 Identities=40% Similarity=0.771 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEEecC-CCCceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEeccCccCCcc
Q 032689 4 PAKKRLMRDFKRLQQDPPAGISGAPQD-NNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIY 82 (135)
Q Consensus 4 ~a~~Rl~kEl~~l~~~~~~~i~~~~~~-~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~ 82 (135)
.+..-|+++|++|++++..|+.+...+ .|+++|.|.|.||++|+|+||.|+..+.||.+||.+||+++|.+++|||||+
T Consensus 5 ~a~~ll~~qlk~L~~~pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwHPNvy 84 (171)
T KOG0425|consen 5 QASLLLLKQLKELQEEPVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWHPNVY 84 (171)
T ss_pred hhHHHHHHHHHHHhcCCCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcCCCcC
Confidence 566788999999999999999998754 5999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEccCCC-------------CCCCCcCCHHHHHHHHHHhhcCCCCCCcccCC
Q 032689 83 ADGSICLDILQ-------------NQWSPIYDVAAILTSIQVKLRFDFSCSFLSIG 125 (135)
Q Consensus 83 ~~G~icl~~l~-------------~~W~p~~~i~~il~~i~~ll~~~~~~~~~~~~ 125 (135)
++|.+|+++|. +.|+|.+|+++||++|.+||++||.+|+++-+
T Consensus 85 ~~G~vCISILH~pgdD~~gyE~~~erW~Pv~tvetIllSiIsmL~~PN~~SPANVD 140 (171)
T KOG0425|consen 85 EDGDVCISILHPPGDDPSGYELPSERWLPVQTVETILLSIISMLNSPNDESPANVD 140 (171)
T ss_pred CCCCEEEEeecCCCCCcccCCChhhccCCccchhHhHHHHHHHHcCCCCCCccchH
Confidence 99999999994 35999999999999999999999999998754
No 8
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-39 Score=221.85 Aligned_cols=125 Identities=42% Similarity=0.828 Sum_probs=119.5
Q ss_pred CChHHHHHHHHHHHHHhhCCCCCeEEEe-cCCCCceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEeccCccC
Q 032689 1 MSTPAKKRLMRDFKRLQQDPPAGISGAP-QDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHP 79 (135)
Q Consensus 1 Ms~~a~~Rl~kEl~~l~~~~~~~i~~~~-~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hp 79 (135)
|+..|+|||++||++|.+++++||.+.| +++|+++|.+.|.||+||+|+||.|..++.||.|||.+||+++|...+|||
T Consensus 1 m~~~AlkRLm~EykqLt~~~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fHP 80 (165)
T KOG0426|consen 1 MAGTALKRLMAEYKQLTLNPPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFHP 80 (165)
T ss_pred CchhHHHHHHHHHHHHccCCCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecccccC
Confidence 8889999999999999999999999988 678999999999999999999999999999999999999999999999999
Q ss_pred CccCCCcEEccCCC-------------CCCCCcCCHHHHHHHHHHhhcCCCCCCcccCC
Q 032689 80 NIYADGSICLDILQ-------------NQWSPIYDVAAILTSIQVKLRFDFSCSFLSIG 125 (135)
Q Consensus 80 nV~~~G~icl~~l~-------------~~W~p~~~i~~il~~i~~ll~~~~~~~~~~~~ 125 (135)
||+.+|+||+++|. +.|+|.++++.||+++.+||++||+++.++..
T Consensus 81 Niy~dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKILLSV~SMLaEPNdESgANvd 139 (165)
T KOG0426|consen 81 NIYPDGRVCISILHAPGDDPMGYELSAERWSPVQSVEKILLSVVSMLAEPNDESGANVD 139 (165)
T ss_pred cccCCCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHHHHHHHHHcCCCcccCcccH
Confidence 99999999999994 45999999999999999999999999988764
No 9
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.2e-40 Score=226.03 Aligned_cols=123 Identities=42% Similarity=0.760 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEeccCccCCccC
Q 032689 4 PAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYA 83 (135)
Q Consensus 4 ~a~~Rl~kEl~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~ 83 (135)
...|||++|+..|+-...+||++.|.+||++.|..+|.||.+|+|+|-.|++.+.||.+||++||+|+|+|+.||||||.
T Consensus 29 ~V~KRLq~ELm~Lmms~~~gISAFP~~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~HPNVD~ 108 (175)
T KOG0421|consen 29 SVTKRLQSELMGLMMSNTPGISAFPESDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFHPNVDL 108 (175)
T ss_pred hHHHHHHHHHHHHHhcCCCCcccCcCcCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccCCCccc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEccCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCcccCCc
Q 032689 84 DGSICLDILQNQWSPIYDVAAILTSIQVKLRFDFSCSFLSIGK 126 (135)
Q Consensus 84 ~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~~~~~~~~~~~~ 126 (135)
.|.||+|+|++.|+..+++++||++||+||-+|+..++++-+.
T Consensus 109 ~GnIcLDILkdKWSa~YdVrTILLSiQSLLGEPNn~SPLNaqA 151 (175)
T KOG0421|consen 109 SGNICLDILKDKWSAVYDVRTILLSIQSLLGEPNNSSPLNAQA 151 (175)
T ss_pred cccchHHHHHHHHHHHHhHHHHHHHHHHHhCCCCCCCcchhHH
Confidence 9999999999999999999999999999999999999987643
No 10
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-39 Score=222.44 Aligned_cols=130 Identities=37% Similarity=0.704 Sum_probs=122.1
Q ss_pred CChHHHHHHHHHHHHHhhCCCCCeEEEec-----CCCCceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecc
Q 032689 1 MSTPAKKRLMRDFKRLQQDPPAGISGAPQ-----DNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSR 75 (135)
Q Consensus 1 Ms~~a~~Rl~kEl~~l~~~~~~~i~~~~~-----~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~ 75 (135)
||+.+..||++|-+.+.++.+-|+++.|. ..|+..|++.|.|+.||+||||.|.+.+.||++||.+||+++|.++
T Consensus 1 ~s~~~~~rl~eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~p 80 (158)
T KOG0424|consen 1 MSGIALNRLAEERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPP 80 (158)
T ss_pred CcchHHHHHHHHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCC
Confidence 89999999999999999999999999883 3478999999999999999999999999999999999999999999
Q ss_pred CccCCccCCCcEEccCCCCC--CCCcCCHHHHHHHHHHhhcCCCCCCcccCCcceEE
Q 032689 76 MFHPNIYADGSICLDILQNQ--WSPIYDVAAILTSIQVKLRFDFSCSFLSIGKRFCF 130 (135)
Q Consensus 76 i~HpnV~~~G~icl~~l~~~--W~p~~~i~~il~~i~~ll~~~~~~~~~~~~~~~~~ 130 (135)
+|||||+.+|.|||++|.++ |+|+.||.+||.+||.||.+||..++++...-.+|
T Consensus 81 l~HPNVypsgtVcLsiL~e~~~W~paitikqiL~gIqdLL~~Pn~~~pAq~eA~~~~ 137 (158)
T KOG0424|consen 81 LFHPNVYPSGTVCLSILNEEKDWRPAITIKQILLGIQDLLDTPNITSPAQTEAYTIY 137 (158)
T ss_pred CcCCCcCCCCcEehhhhccccCCCchhhHHHHHHHHHHHhcCCCCCCchhhHHHHHH
Confidence 99999999999999999865 99999999999999999999999999987654443
No 11
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=100.00 E-value=2.1e-38 Score=222.16 Aligned_cols=119 Identities=46% Similarity=0.896 Sum_probs=108.4
Q ss_pred HHHHHHHHHhhCCCCCeEEEecCC-CCceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEeccCccCCccCCCc
Q 032689 8 RLMRDFKRLQQDPPAGISGAPQDN-NIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGS 86 (135)
Q Consensus 8 Rl~kEl~~l~~~~~~~i~~~~~~~-~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~~G~ 86 (135)
||++|+++++++++.|+++.+.++ |+.+|+++|.||++|||+||.|++.|.||++||++||+|+|.|++|||||+.+|.
T Consensus 1 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~~~G~ 80 (140)
T PF00179_consen 1 RLQKELKELQKNPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNIDENGR 80 (140)
T ss_dssp HHHHHHHHHHHSHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB-TTSB
T ss_pred CHHHHHHHHhhCCCCCEEEEECCCCChheEEEEEeccCccceeccccccccccccccccccccccccccccccccccccc
Confidence 899999999999999999999886 9999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCC-CCCCcCCHHHHHHHHHHhhcCCCCCCcccCCc
Q 032689 87 ICLDILQN-QWSPIYDVAAILTSIQVKLRFDFSCSFLSIGK 126 (135)
Q Consensus 87 icl~~l~~-~W~p~~~i~~il~~i~~ll~~~~~~~~~~~~~ 126 (135)
||+++|.. .|+|++++.+||.+|+++|.+|+.+++.+...
T Consensus 81 icl~~l~~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~a 121 (140)
T PF00179_consen 81 ICLDILNPESWSPSYTIESILLSIQSLLSEPNPEDPLNEEA 121 (140)
T ss_dssp BGHGGGTTTTC-TTSHHHHHHHHHHHHHHSTCTTSTSSHHH
T ss_pred chhhhhhcccCCcccccccHHHHHHHHHhCCCCCCcchHHH
Confidence 99999985 59999999999999999999998888876544
No 12
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=100.00 E-value=1.8e-37 Score=217.72 Aligned_cols=118 Identities=47% Similarity=0.952 Sum_probs=113.6
Q ss_pred HHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEeccCccCCccCCCc
Q 032689 7 KRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGS 86 (135)
Q Consensus 7 ~Rl~kEl~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~~G~ 86 (135)
+||++|+++++++++.|+++.+.++|+++|+++|.|+++|||+||.|++.|.||++||++||+|+|.++++||||+.+|.
T Consensus 2 ~Rl~~E~~~l~~~~~~~~~v~~~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~~~G~ 81 (141)
T cd00195 2 KRLQKELKDLKKDPPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVDENGK 81 (141)
T ss_pred chHHHHHHHHHhCCCCCeEEEECCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCCCCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCCC-CCCcCCHHHHHHHHHHhhcCCCCCCcccC
Q 032689 87 ICLDILQNQ-WSPIYDVAAILTSIQVKLRFDFSCSFLSI 124 (135)
Q Consensus 87 icl~~l~~~-W~p~~~i~~il~~i~~ll~~~~~~~~~~~ 124 (135)
||++++... |+|++++++||.+|+++|.+|+..++++.
T Consensus 82 icl~~l~~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~ 120 (141)
T cd00195 82 ICLSILKTHGWSPAYTLRTVLLSLQSLLNEPNPSDPLNA 120 (141)
T ss_pred CchhhcCCCCcCCcCcHHHHHHHHHHHHhCCCCCCchhH
Confidence 999999877 99999999999999999999998877654
No 13
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=100.00 E-value=5.8e-36 Score=210.93 Aligned_cols=119 Identities=46% Similarity=0.913 Sum_probs=113.6
Q ss_pred HHHHHHHHHHhhCCCCCeEEEecCC-CCceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEeccCccCCccCCC
Q 032689 7 KRLMRDFKRLQQDPPAGISGAPQDN-NIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADG 85 (135)
Q Consensus 7 ~Rl~kEl~~l~~~~~~~i~~~~~~~-~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~~G 85 (135)
+||++|++++++++++|+++.+.++ |+++|++++.||++|||+||.|++.|.||++||++||+|+|.++++||||+.+|
T Consensus 1 ~Rl~~E~~~~~~~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~~~G 80 (145)
T smart00212 1 KRLLKELKELLKDPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVDSSG 80 (145)
T ss_pred ChHHHHHHHHHhCCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeECCCC
Confidence 5999999999999999999988765 999999999999999999999999999999999999999999999999999999
Q ss_pred cEEccCCC-CCCCCcCCHHHHHHHHHHhhcCCCCCCcccCC
Q 032689 86 SICLDILQ-NQWSPIYDVAAILTSIQVKLRFDFSCSFLSIG 125 (135)
Q Consensus 86 ~icl~~l~-~~W~p~~~i~~il~~i~~ll~~~~~~~~~~~~ 125 (135)
.+|++.+. ++|+|++++++||.+|+++|.+|+..++++..
T Consensus 81 ~icl~~l~~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~e 121 (145)
T smart00212 81 EICLDILKQEKWSPATTLETVLLSIQSLLSEPNPDSPLNAD 121 (145)
T ss_pred CEehhhcCCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHH
Confidence 99999998 89999999999999999999999998887644
No 14
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-35 Score=202.03 Aligned_cols=128 Identities=32% Similarity=0.608 Sum_probs=119.5
Q ss_pred CChHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEeccC-ccC
Q 032689 1 MSTPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRM-FHP 79 (135)
Q Consensus 1 Ms~~a~~Rl~kEl~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i-~Hp 79 (135)
|+..|.+||+||+.+++.+++.|+... ..+|+.+|.+.+.|.+||.|+|.+|.++++||+.||++.|.|.|+.++ .||
T Consensus 12 ls~~at~RLqKEl~e~q~~pP~G~~~~-v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~HP 90 (161)
T KOG0427|consen 12 LSKIATNRLQKELSEWQNNPPTGFKHR-VTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAPLHP 90 (161)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcceee-cccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCCCCC
Confidence 456789999999999999999999887 678999999999999999999999999999999999999999999875 699
Q ss_pred CccCCCcEEccCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCcccCCcceE
Q 032689 80 NIYADGSICLDILQNQWSPIYDVAAILTSIQVKLRFDFSCSFLSIGKRFC 129 (135)
Q Consensus 80 nV~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~~~~~~~~~~~~~~~ 129 (135)
||+++|.||+++|.++|+|++++.+|+++|.+||++......+.+..+|+
T Consensus 91 HiYSNGHICL~iL~d~WsPAmsv~SvClSIlSMLSSs~eKqrP~Dn~~Yv 140 (161)
T KOG0427|consen 91 HIYSNGHICLDILYDSWSPAMSVQSVCLSILSMLSSSKEKQRPTDNDRYV 140 (161)
T ss_pred ceecCCeEEEEeecccCCcchhhHHHHHHHHHHHccCccccCCCccchhh
Confidence 99999999999999999999999999999999999988888777776663
No 15
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.4e-33 Score=189.13 Aligned_cols=119 Identities=27% Similarity=0.645 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHHhhCCCCCeE-EEecCCCCceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEeccCccCCccC
Q 032689 5 AKKRLMRDFKRLQQDPPAGIS-GAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYA 83 (135)
Q Consensus 5 a~~Rl~kEl~~l~~~~~~~i~-~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~ 83 (135)
|.+||+||+.+|++++...+. +...+.|++.|.+.+. |++-||..|.|+++|.||.+|||+||+|.|.|+|||||||+
T Consensus 3 a~~Rl~kEL~dl~~~~~~~~rn~~~~e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNVDe 81 (153)
T KOG0422|consen 3 APRRLRKELADLQKNKMKFFRNIEVDEANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNVDE 81 (153)
T ss_pred hhHHHHHHHHHHHhccHHHHhhhhcccccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCCCC
Confidence 679999999999999877443 4557889999999998 78889999999999999999999999999999999999999
Q ss_pred CCcEEccCCC-CCCCCcCCHHHHHHHHHHhhcCCCCCCcccC
Q 032689 84 DGSICLDILQ-NQWSPIYDVAAILTSIQVKLRFDFSCSFLSI 124 (135)
Q Consensus 84 ~G~icl~~l~-~~W~p~~~i~~il~~i~~ll~~~~~~~~~~~ 124 (135)
.|.+|+.++. ++|.|++.+++||++|.+++.+|+++-+...
T Consensus 82 ~gqvClPiis~EnWkP~T~teqVlqaLi~liN~P~pe~plr~ 123 (153)
T KOG0422|consen 82 KGQVCLPIISAENWKPATRTEQVLQALIALINDPEPEHPLRI 123 (153)
T ss_pred CCceeeeeeecccccCcccHHHHHHHHHHHhcCCCccccchh
Confidence 9999999994 8899999999999999999999999887654
No 16
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=1e-32 Score=194.87 Aligned_cols=123 Identities=27% Similarity=0.584 Sum_probs=105.5
Q ss_pred hHHHHHHHHHHHHHhhCCCCCeEEEecCCCCc--eeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEeccCccCC
Q 032689 3 TPAKKRLMRDFKRLQQDPPAGISGAPQDNNIM--LWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPN 80 (135)
Q Consensus 3 ~~a~~Rl~kEl~~l~~~~~~~i~~~~~~~~~~--~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn 80 (135)
+.|.-||++|..++..-+...+++....++.+ ++.++|. |+++.|+||.|.|.+.+|+.||++||+|.|+|++||||
T Consensus 27 s~a~lrl~~di~elnLp~t~~~s~~~~~~d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV~HPN 105 (184)
T KOG0420|consen 27 SAALLRLKKDILELNLPPTCSLSFPDSPDDLNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKVYHPN 105 (184)
T ss_pred cHHHHHHHhhhhhccCCCccccccccCCcccccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeeccccCC
Confidence 46778888888888643333333322234443 5888988 88889999999999999999999999999999999999
Q ss_pred ccCCCcEEccCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCcccCCc
Q 032689 81 IYADGSICLDILQNQWSPIYDVAAILTSIQVKLRFDFSCSFLSIGK 126 (135)
Q Consensus 81 V~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~~~~~~~~~~~~ 126 (135)
|+.+|.|||++|+++|+|+.+|.+|+.+++.||.+|+++++++..+
T Consensus 106 Id~~GnVCLnILRedW~P~lnL~sIi~GL~~LF~epn~eDpLN~eA 151 (184)
T KOG0420|consen 106 IDLDGNVCLNILREDWRPVLNLNSIIYGLQFLFLEPNPEDPLNKEA 151 (184)
T ss_pred cCCcchHHHHHHHhcCccccchHHHHHHHHHHhccCCCcccccHHH
Confidence 9999999999999999999999999999999999999999998754
No 17
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.1e-31 Score=195.83 Aligned_cols=115 Identities=35% Similarity=0.700 Sum_probs=104.9
Q ss_pred CC-hHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecc--Cc
Q 032689 1 MS-TPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSR--MF 77 (135)
Q Consensus 1 Ms-~~a~~Rl~kEl~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~--i~ 77 (135)
|+ ..|.|||+|||+.|.++|.+++.+.|.++|+++||.++.||+||||+||.|+.++.||++||++||.|++.|| +|
T Consensus 1 ma~k~a~kRl~keY~~l~k~Pv~~i~A~P~p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTPNGRF 80 (244)
T KOG0894|consen 1 MASKAAVKRLQKEYRALCKDPVPYIVARPNPNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITPNGRF 80 (244)
T ss_pred CcchHHHHHHHHHHHHHHhCCchhhccCCCccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECCCCce
Confidence 44 4788999999999999999999999999999999999999999999999999999999999999999999995 34
Q ss_pred cCCccCCCcEEccCC---CCCCCCcCCHHHHHHHHHHhhcCCCCC
Q 032689 78 HPNIYADGSICLDIL---QNQWSPIYDVAAILTSIQVKLRFDFSC 119 (135)
Q Consensus 78 HpnV~~~G~icl~~l---~~~W~p~~~i~~il~~i~~ll~~~~~~ 119 (135)
- -+-++||++. .+.|+|+|++.+||.+|.++|.+..+.
T Consensus 81 k----tntRLCLSiSDfHPdsWNP~WsVStILtGLlSFM~e~~pT 121 (244)
T KOG0894|consen 81 K----TNTRLCLSISDFHPDSWNPGWSVSTILTGLLSFMTEDSPT 121 (244)
T ss_pred e----cCceEEEeccccCcCcCCCcccHHHHHHHHHHHHhcCCCc
Confidence 3 3469999877 488999999999999999999887654
No 18
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=8.3e-33 Score=195.76 Aligned_cols=123 Identities=31% Similarity=0.622 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEeccCccCCccC
Q 032689 4 PAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYA 83 (135)
Q Consensus 4 ~a~~Rl~kEl~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~ 83 (135)
-.++.+.+|++.+...|+.||+|.++++|+....+.|.||.||||++|.|+..+.+..|||.+||+-+|+|+||||||..
T Consensus 10 ~vik~~~kEl~~l~~~PPdGIKV~~NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHPNVaa 89 (223)
T KOG0423|consen 10 NVIKQLAKELKSLDESPPDGIKVVVNEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFHPNVAA 89 (223)
T ss_pred HHHHHHHHHHHhcccCCCCceEEecChHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeeccCCccc
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEccCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCcccCCc
Q 032689 84 DGSICLDILQNQWSPIYDVAAILTSIQVKLRFDFSCSFLSIGK 126 (135)
Q Consensus 84 ~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~~~~~~~~~~~~ 126 (135)
+|.||.+.|+.+|+|+.+|..||+.|..||..|+|+|+++.+.
T Consensus 90 NGEICVNtLKkDW~p~LGirHvLltikCLLI~PnPESALNEeA 132 (223)
T KOG0423|consen 90 NGEICVNTLKKDWNPSLGIRHVLLTIKCLLIEPNPESALNEEA 132 (223)
T ss_pred CceehhhhhhcccCcccchhhHhhhhheeeecCChHHHHhHHH
Confidence 9999999999999999999999999999999999999998764
No 19
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=6.4e-32 Score=190.56 Aligned_cols=128 Identities=31% Similarity=0.674 Sum_probs=115.4
Q ss_pred CChHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEeccCccCC
Q 032689 1 MSTPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPN 80 (135)
Q Consensus 1 Ms~~a~~Rl~kEl~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn 80 (135)
||+ ..||+..|...|.. .+..|...++++.+++|.+.||.+|||+||++++++.+|++||++.|.|.|+++|||||
T Consensus 1 ms~-~~rRid~Dv~KL~~---s~yeV~~ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPN 76 (189)
T KOG0416|consen 1 MSS-GKRRIDTDVMKLLM---SDYEVTIINDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPN 76 (189)
T ss_pred CCC-cccchhhHHHHHHh---cCCeEEEecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCC
Confidence 555 46999999998874 34578888899999999999999999999999999999999999999999999999999
Q ss_pred cc-CCCcEEccCCCCCCCCcCCHHHHHHH-HHHhhcCCCCCCcccCCcceEEEE
Q 032689 81 IY-ADGSICLDILQNQWSPIYDVAAILTS-IQVKLRFDFSCSFLSIGKRFCFLF 132 (135)
Q Consensus 81 V~-~~G~icl~~l~~~W~p~~~i~~il~~-i~~ll~~~~~~~~~~~~~~~~~~~ 132 (135)
|+ .+|.|||+.++..|+|.+.+..|+.. |-+||..||+.+++++.+--.|||
T Consensus 77 IDe~SGsVCLDViNQtWSp~yDL~NIfetfLPQLL~YPNp~DPLN~eAAal~l~ 130 (189)
T KOG0416|consen 77 IDEASGSVCLDVINQTWSPLYDLVNIFETFLPQLLRYPNPSDPLNGEAAALYLR 130 (189)
T ss_pred chhccCccHHHHHhhhhhHHHHHHHHHHHHhHHHhcCCCCCCCcccHHHHHHhc
Confidence 99 89999999999999999999999966 678999999999999887655544
No 20
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=3.7e-24 Score=159.22 Aligned_cols=111 Identities=29% Similarity=0.612 Sum_probs=98.9
Q ss_pred hHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEeccCccCCcc
Q 032689 3 TPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIY 82 (135)
Q Consensus 3 ~~a~~Rl~kEl~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~ 82 (135)
+++.|||+||.++++ +|.....+.+.++|+++|+++|.||.||-||||+|+.+|.||.+||++||.+..+|+- ..+.
T Consensus 10 npaVkRlmkEa~El~-~Ptd~yha~plEdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTpN--GRFE 86 (314)
T KOG0428|consen 10 NPAVKRLMKEAAELK-DPTDHYHAQPLEDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTPN--GRFE 86 (314)
T ss_pred CHHHHHHHHHHHHhc-CchhhhhhccchhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcCC--Ccee
Confidence 478999999999999 7777788899999999999999999999999999999999999999999999999942 2234
Q ss_pred CCCcEEccCCC---CCCCCcCCHHHHHHHHHHhhcCC
Q 032689 83 ADGSICLDILQ---NQWSPIYDVAAILTSIQVKLRFD 116 (135)
Q Consensus 83 ~~G~icl~~l~---~~W~p~~~i~~il~~i~~ll~~~ 116 (135)
.+.+||+++.. +.|.|+|+|.+.|++|..+|-..
T Consensus 87 ~nkKiCLSISgyHPEtWqPSWSiRTALlAlIgFmPt~ 123 (314)
T KOG0428|consen 87 VNKKICLSISGYHPETWQPSWSIRTALLALIGFMPTK 123 (314)
T ss_pred eCceEEEEecCCCccccCcchhHHHHHHHHHccccCC
Confidence 56789999985 78999999999999999887553
No 21
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=6.8e-19 Score=151.58 Aligned_cols=122 Identities=31% Similarity=0.564 Sum_probs=109.8
Q ss_pred HHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecc--CccCCccCC
Q 032689 7 KRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSR--MFHPNIYAD 84 (135)
Q Consensus 7 ~Rl~kEl~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~--i~HpnV~~~ 84 (135)
+..+.|++-+..+.+.|+.|...++.+....+.|.|+.||||.+|+|.|.+.||++||.+||.+...+. +++||.+.+
T Consensus 854 ~~~~~~~~~~~~~~~~~~~vr~~e~r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npnly~~ 933 (1101)
T KOG0895|consen 854 KKVQTEWKILPLSLPSGIFVRAYEDRMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPNLYED 933 (1101)
T ss_pred HHHHHHHHhhhccCCCceEEEechHHHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCcccccc
Confidence 445557777788888999999999988889999999999999999999999999999999999999974 789999999
Q ss_pred CcEEccCCC-------CCCCCcCCHHHHHHHHHHhhcCCCCCCcccCCcce
Q 032689 85 GSICLDILQ-------NQWSPIYDVAAILTSIQVKLRFDFSCSFLSIGKRF 128 (135)
Q Consensus 85 G~icl~~l~-------~~W~p~~~i~~il~~i~~ll~~~~~~~~~~~~~~~ 128 (135)
|++|+++|+ +.|+|+-++.+||.+||+|.....|....+++.+.
T Consensus 934 g~vc~s~l~tw~g~~~e~w~~~s~~lq~l~s~q~l~l~~~py~ne~gy~~~ 984 (1101)
T KOG0895|consen 934 GKVCLSLLNTWHGRGNEVWNPSSSILQVLVSIQGLVLNEEPYFNEAGYEKQ 984 (1101)
T ss_pred cceehhhhccccCCCccccCcchhHHHHHHHhhhhhcccccccCccccccc
Confidence 999999995 56999999999999999999999888877777654
No 22
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=2.8e-18 Score=126.09 Aligned_cols=115 Identities=23% Similarity=0.389 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCC--CCCeEEEeccCccCCcc-
Q 032689 6 KKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPN--KPPTVRFVSRMFHPNIY- 82 (135)
Q Consensus 6 ~~Rl~kEl~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~--~pP~v~f~t~i~HpnV~- 82 (135)
.-.|++|+..+.+.+.+||+|.|.-.|-+.|+.+|.+..| .|.||+|+|+|.+|++||. +-|+|.|.+.++||+|.
T Consensus 21 ey~llAEf~lV~~ekL~gIyviPSyan~l~WFGViFvr~G-iyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~icp 99 (258)
T KOG0429|consen 21 EYALLAEFVLVCREKLDGIYVIPSYANKLLWFGVIFVRKG-IYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLICP 99 (258)
T ss_pred HHHHHHHHHHHHhccCCceEEcccccccceEEEEEEEecc-cccCceEEEEEEcCccCCCcCCCCeEEeeccccccccCC
Confidence 3568899999999999999999999999999999998887 8999999999999999995 48999999999999999
Q ss_pred CCCcEEccCCCCCCCCcC-CHHHHHHHHHHhhcCCCCCCc
Q 032689 83 ADGSICLDILQNQWSPIY-DVAAILTSIQVKLRFDFSCSF 121 (135)
Q Consensus 83 ~~G~icl~~l~~~W~p~~-~i~~il~~i~~ll~~~~~~~~ 121 (135)
.++.+|+.-....|.-.. .|++||..+|..|.+++....
T Consensus 100 ~skeLdl~raf~eWRk~ehhiwqvL~ylqriF~dpd~si~ 139 (258)
T KOG0429|consen 100 KSKELDLNRAFPEWRKEEHHIWQVLVYLQRIFYDPDVSID 139 (258)
T ss_pred CccceeHhhhhhhhhccccHHHHHHHHHHHHhcCcccchh
Confidence 799999988877798875 799999999999999887654
No 23
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=1.5e-16 Score=137.23 Aligned_cols=116 Identities=34% Similarity=0.703 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecc---CccCC
Q 032689 4 PAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSR---MFHPN 80 (135)
Q Consensus 4 ~a~~Rl~kEl~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~---i~Hpn 80 (135)
...+|+++|++.+.++.++|+.+.+.+..+...++.|.|+.||||++|.|.|.|.+|..||..||.+.+++. ++.||
T Consensus 282 ~~skrv~ke~~llskdlpEgifvrp~e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~R~nPN 361 (1101)
T KOG0895|consen 282 NWSKKVAKELKLLSKDLPEGIFVRPDEGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGVRLNPN 361 (1101)
T ss_pred hhHHHHHHHhhhhcccCCCCccccccccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeeccceeecCC
Confidence 457999999999999999999999999999999999999999999999999999999999999999999976 78999
Q ss_pred ccCCCcEEccCCC-------CCCCCc-CCHHHHHHHHHHhhcCCCCC
Q 032689 81 IYADGSICLDILQ-------NQWSPI-YDVAAILTSIQVKLRFDFSC 119 (135)
Q Consensus 81 V~~~G~icl~~l~-------~~W~p~-~~i~~il~~i~~ll~~~~~~ 119 (135)
.+.+|+||+++|. +.|+|. -++.++|.+||.++....|.
T Consensus 362 lYn~GKVcLslLgTwtg~~~e~wtp~~~sl~qvL~sIQ~Li~~e~Py 408 (1101)
T KOG0895|consen 362 LYNDGKVCLSLLGTWTGSRREKWTPNGSSLLQVLESIQGLILNEEPY 408 (1101)
T ss_pred cccCceEEeeeeeecccccccCCCccccchhhhhhhhhhhhcccCcc
Confidence 9999999999983 679999 78999999999998877443
No 24
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=1.6e-14 Score=98.91 Aligned_cols=127 Identities=20% Similarity=0.441 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEEe--cCCC--CceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEeccCccC
Q 032689 4 PAKKRLMRDFKRLQQDPPAGISGAP--QDNN--IMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHP 79 (135)
Q Consensus 4 ~a~~Rl~kEl~~l~~~~~~~i~~~~--~~~~--~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hp 79 (135)
++.-||.+|+.+=++-..+|..-.. +.+| +..|...|.||+-|+||+..|.++|...++||..||+|+|.+++--.
T Consensus 5 Prnfrlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkinm~ 84 (138)
T KOG0896|consen 5 PRNFRLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKINMN 84 (138)
T ss_pred ccchhhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEeeec
Confidence 3457889898887766655443332 2233 46899999999999999999999999999999999999999999888
Q ss_pred Ccc-CCCcEEccCC--CCCCCCcCCHHHHHHHHHHhhcCCCCCCcccCCcceEE
Q 032689 80 NIY-ADGSICLDIL--QNQWSPIYDVAAILTSIQVKLRFDFSCSFLSIGKRFCF 130 (135)
Q Consensus 80 nV~-~~G~icl~~l--~~~W~p~~~i~~il~~i~~ll~~~~~~~~~~~~~~~~~ 130 (135)
.|. .+|.+.-..+ -.+|+-.++++.+|.++...+.+......+...+..||
T Consensus 85 gvn~~~g~Vd~~~i~~L~~W~~~y~~~~vl~~lr~~m~~~eN~kl~qp~eg~~~ 138 (138)
T KOG0896|consen 85 GVNSSNGVVDPRDITVLARWQRSYSIKMVLGQLRKEMMSKENRKLPQPPEGQCF 138 (138)
T ss_pred ccccCCCccCccccchhhcccccchhhHHHHhhhHHHHHHHhhcccCCCCCCcC
Confidence 887 6777765333 37899999999999999988777666666665555554
No 25
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=2.7e-09 Score=71.35 Aligned_cols=66 Identities=26% Similarity=0.519 Sum_probs=55.5
Q ss_pred EEEEEEcCCCCCCCCCeEEEeccCcc-CCccCCCcEEccCCC-CCCCCcCCHHHHHHHHHHhhcCCCC
Q 032689 53 FKLTLQFTEDYPNKPPTVRFVSRMFH-PNIYADGSICLDILQ-NQWSPIYDVAAILTSIQVKLRFDFS 118 (135)
Q Consensus 53 f~~~i~fp~~YP~~pP~v~f~t~i~H-pnV~~~G~icl~~l~-~~W~p~~~i~~il~~i~~ll~~~~~ 118 (135)
.-+.+.|+++||+.||.++...|.-. .-|-.+|.||+.++. ++|+.+++++.+++++.+.+.....
T Consensus 13 ill~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt~qgwssay~Ve~vi~qiaatlVkG~~ 80 (122)
T KOG0897|consen 13 ILLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLTKQGWSSAYEVERVIMQIAATLVKGGA 80 (122)
T ss_pred eEeeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHccccccchhhHHHHHHHHHHHhhccce
Confidence 45678899999999999999886542 334479999999995 7899999999999999999887654
No 26
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=98.78 E-value=1.5e-08 Score=70.43 Aligned_cols=68 Identities=31% Similarity=0.615 Sum_probs=61.1
Q ss_pred CCCEEEEEEEcCCCCCCCCCeEEEeccC---ccCCccCCCcEEc---cCCCCCCCCcCCHHHHHHHHHHhhcCC
Q 032689 49 DGGTFKLTLQFTEDYPNKPPTVRFVSRM---FHPNIYADGSICL---DILQNQWSPIYDVAAILTSIQVKLRFD 116 (135)
Q Consensus 49 ~gg~f~~~i~fp~~YP~~pP~v~f~t~i---~HpnV~~~G~icl---~~l~~~W~p~~~i~~il~~i~~ll~~~ 116 (135)
.|+.+.+.|.+|++||..||.|....+. +=|||+.+|.+|+ +..-+.|.|.-.+.++|.+.+.+|...
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl~~~~~~~D~~~P~~~~~~~l~~a~~lL~~~ 107 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCLLDEELVLDPWDPEGIIADCLERAIRLLEDG 107 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEEecCCcccCccCHHHHHHHHHHHHHHHHHHh
Confidence 5899999999999999999999999654 6799999999999 777889999999999999999988743
No 27
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=98.74 E-value=4.6e-09 Score=72.93 Aligned_cols=97 Identities=23% Similarity=0.408 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEeCCCCCCCCCCE----------EEEEEEcCCCCCCCCCeEEEe
Q 032689 4 PAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGT----------FKLTLQFTEDYPNKPPTVRFV 73 (135)
Q Consensus 4 ~a~~Rl~kEl~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~----------f~~~i~fp~~YP~~pP~v~f~ 73 (135)
.-..||.+||+.|.+ +++.+.++-..|+-.-..++||-|.|.+ |.+++.+|..||..||.+..-
T Consensus 24 ~W~~RLKEEy~aLI~------Yv~~nK~~DndWF~lesn~~GT~W~GkCW~~h~l~kYEF~~eFdIP~tYP~t~pEi~lP 97 (161)
T PF08694_consen 24 LWVQRLKEEYQALIK------YVENNKENDNDWFRLESNKEGTRWFGKCWYIHNLLKYEFDLEFDIPVTYPTTAPEIALP 97 (161)
T ss_dssp HHHHHHHHHHHHHHH------HHHHHHHTT---EEEEE-TTSSEEEEEEEEEETTEEEEEEEEEE--TTTTTS----B-G
T ss_pred HHHHHHHHHHHHHHH------HHHhcccccCCeEEeccCCCCCccccEEEEEeeeeeEEEeeecCCCccCCCCCcceecc
Confidence 356899999999874 4555555566777766778888887776 778899999999999999875
Q ss_pred cc-CccCCccCCCcEEccCCC-CCC---CCcCCHHHHH
Q 032689 74 SR-MFHPNIYADGSICLDILQ-NQW---SPIYDVAAIL 106 (135)
Q Consensus 74 t~-i~HpnV~~~G~icl~~l~-~~W---~p~~~i~~il 106 (135)
.- =-..-.+.+|+||++... .-| .|.++|.+.|
T Consensus 98 eLdGKTaKMYRGGkIClt~HFkPLWakN~PkfGIaHal 135 (161)
T PF08694_consen 98 ELDGKTAKMYRGGKICLTDHFKPLWAKNVPKFGIAHAL 135 (161)
T ss_dssp GGTTT-SSBCCCCBB---TTHHHHHHCTTTT--HHHHH
T ss_pred ccCCchhhhhcCceEeeecccchhhhhcCCchhHHHHH
Confidence 31 001223479999999885 334 7888988765
No 28
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=98.54 E-value=4.9e-07 Score=61.99 Aligned_cols=88 Identities=17% Similarity=0.407 Sum_probs=57.0
Q ss_pred CCCCceeEEEEeCCCCCCCCCCEEE--EEEEcCCCCCCCCCeEEEecc-----CccCCccCCCcEEccCCCCCCCC-cCC
Q 032689 30 DNNIMLWNAVIFGPDDTPWDGGTFK--LTLQFTEDYPNKPPTVRFVSR-----MFHPNIYADGSICLDILQNQWSP-IYD 101 (135)
Q Consensus 30 ~~~~~~w~~~i~gp~~tpy~gg~f~--~~i~fp~~YP~~pP~v~f~t~-----i~HpnV~~~G~icl~~l~~~W~p-~~~ 101 (135)
++...+--+.+.|--.-.|+|.+|. +.|-+|.+||.+||.+...-. .-+.+|+.+|+|.+..| ++|++ ..+
T Consensus 25 ~~G~~~~LL~L~Gtipi~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~~G~v~~pyL-~~W~~~~s~ 103 (121)
T PF05743_consen 25 NDGSSKLLLCLYGTIPITYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDSNGRVYLPYL-QNWNPPSSN 103 (121)
T ss_dssp TTSTEEEEEEEEEEEEECCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-TTSBB-SHHH-HT--TTTS-
T ss_pred CCCChheEEEEecCcccccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECCCCCEeCchh-ccCCCCCCC
Confidence 3333333344444222358888875 677799999999999988732 12449999999988877 46777 778
Q ss_pred HHHHHHHHHHhhcCCCC
Q 032689 102 VAAILTSIQVKLRFDFS 118 (135)
Q Consensus 102 i~~il~~i~~ll~~~~~ 118 (135)
+.+++..+++.|.+..|
T Consensus 104 L~~lv~~l~~~F~~~pP 120 (121)
T PF05743_consen 104 LVDLVQELQAVFSEEPP 120 (121)
T ss_dssp HHHHHHHHHHCCCHS-S
T ss_pred HHHHHHHHHHHHhHcCC
Confidence 99999999998887654
No 29
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.22 E-value=2.2e-06 Score=58.98 Aligned_cols=96 Identities=21% Similarity=0.402 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEeCCCCCCCCCCE----------EEEEEEcCCCCCCCCCeEEEec
Q 032689 5 AKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGT----------FKLTLQFTEDYPNKPPTVRFVS 74 (135)
Q Consensus 5 a~~Rl~kEl~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~----------f~~~i~fp~~YP~~pP~v~f~t 74 (135)
-..||.+|++.+.. +++-+.++-..|+-.-..++||.|-|.+ |.+++.+|-.||..+|.+....
T Consensus 28 wvqrlkeey~sli~------yvqnnk~~d~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tapeialpe 101 (167)
T KOG3357|consen 28 WVQRLKEEYQSLIA------YVQNNKSNDNDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEIALPE 101 (167)
T ss_pred HHHHHHHHHHHHHH------HHHhCcccCCcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCccccccc
Confidence 46899999999874 3444556667787777789999998875 7788889999999999987642
Q ss_pred cC-ccCCccCCCcEEccCCC-CCC---CCcCCHHHHH
Q 032689 75 RM-FHPNIYADGSICLDILQ-NQW---SPIYDVAAIL 106 (135)
Q Consensus 75 ~i-~HpnV~~~G~icl~~l~-~~W---~p~~~i~~il 106 (135)
-- -.--.+.+|+||+.-.. .-| .|.++|...+
T Consensus 102 ldgktakmyrggkiclt~hfkplwarn~pkfgiaha~ 138 (167)
T KOG3357|consen 102 LDGKTAKMYRGGKICLTDHFKPLWARNVPKFGIAHAM 138 (167)
T ss_pred cCchhhhhhcCceEeeccccchhhhhcCcchhHHHHH
Confidence 00 00122479999996664 446 6777777653
No 30
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.73 E-value=0.00032 Score=55.39 Aligned_cols=81 Identities=20% Similarity=0.441 Sum_probs=62.8
Q ss_pred EeCCCCCCCCCCEEEE--EEEcCCCCCCCCCeEEEe-cc----CccCCccCCCcEEccCCCCCCC-CcCCHHHHHHHHHH
Q 032689 40 IFGPDDTPWDGGTFKL--TLQFTEDYPNKPPTVRFV-SR----MFHPNIYADGSICLDILQNQWS-PIYDVAAILTSIQV 111 (135)
Q Consensus 40 i~gp~~tpy~gg~f~~--~i~fp~~YP~~pP~v~f~-t~----i~HpnV~~~G~icl~~l~~~W~-p~~~i~~il~~i~~ 111 (135)
+.|---.+|.|.+|.+ .|=+.+.||..||.+.+. |. -.|.||+.+|.|-|..|. +|. |+.++..++..+.+
T Consensus 55 ~~GTIp~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd~nG~V~LPYLh-~W~~pssdLv~Liq~l~a 133 (365)
T KOG2391|consen 55 LDGTIPVPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVDPNGKVYLPYLH-NWDPPSSDLVGLIQELIA 133 (365)
T ss_pred ccCcccccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccCCCCeEechhhc-cCCCccchHHHHHHHHHH
Confidence 4444445788888764 555899999999999776 21 139999999999999995 565 55789999999999
Q ss_pred hhcCCCCCCc
Q 032689 112 KLRFDFSCSF 121 (135)
Q Consensus 112 ll~~~~~~~~ 121 (135)
.|.++++.-.
T Consensus 134 ~f~~~pP~ys 143 (365)
T KOG2391|consen 134 AFSEDPPVYS 143 (365)
T ss_pred HhcCCCcccc
Confidence 9998777554
No 31
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=97.01 E-value=0.011 Score=40.51 Aligned_cols=91 Identities=18% Similarity=0.295 Sum_probs=61.8
Q ss_pred CCeEEEecCCCCceeEEEEeC--CCCCCCCCCEEEEEEEcCCCCCCCCCeEEEeccCccCCccCCCcE--Ec--------
Q 032689 22 AGISGAPQDNNIMLWNAVIFG--PDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSI--CL-------- 89 (135)
Q Consensus 22 ~~i~~~~~~~~~~~w~~~i~g--p~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~~G~i--cl-------- 89 (135)
.|+..+...+.-..|.+ |.| -+.+.|.+..-.+-|.+|+.||..+|.+.+..|-..-. .+|.+ |-
T Consensus 12 ~g~~~E~v~eg~~~~li-i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P~L~~~--~G~~iP~~~~~~~~~~G 88 (122)
T PF14462_consen 12 RGLRWETVTEGGRRWLI-IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYPPLKLA--DGGPIPNAAEVTQTFDG 88 (122)
T ss_pred cCceEEEEEeCCccEEE-EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECCceEcc--CCCcCCchhcchhhcCC
Confidence 46777776666666755 555 33446999999999999999999998777766432111 12222 22
Q ss_pred ------cCCCCCCCCcC-CHHHHHHHHHHhhcC
Q 032689 90 ------DILQNQWSPIY-DVAAILTSIQVKLRF 115 (135)
Q Consensus 90 ------~~l~~~W~p~~-~i~~il~~i~~ll~~ 115 (135)
+-....|.|.. ++.+.|..|...|..
T Consensus 89 ~~wQrWSRH~~~W~P~~D~l~T~l~~v~~~L~~ 121 (122)
T PF14462_consen 89 RTWQRWSRHNNPWRPGVDDLWTHLARVEHALAK 121 (122)
T ss_pred eeeeeecCCCCCCCCCCCcHHHHHHHHHHHHhh
Confidence 11234599998 699999999887754
No 32
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=96.65 E-value=0.009 Score=39.24 Aligned_cols=69 Identities=13% Similarity=0.141 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEeC--CCCCCCCCCEEEEEEEcCCCCCCCCCeEEEeccC
Q 032689 7 KRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFG--PDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRM 76 (135)
Q Consensus 7 ~Rl~kEl~~l~~~~~~~i~~~~~~~~~~~w~~~i~g--p~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i 76 (135)
.+...|+..|+.-=+... ......+...+.+.+.. ...+.-....+.+.+.||++||..+|.|.+.++.
T Consensus 4 e~~~~EieaL~sIy~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~~ 74 (113)
T PF05773_consen 4 EQQEEEIEALQSIYPDDF-IEIESKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESPK 74 (113)
T ss_dssp HHHHHHHHHHHHHSSSSE-SSSTSSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEES
T ss_pred HHHHHHHHHHHHHcCCCc-cccccCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcCC
Confidence 456778887764333322 22233344455566621 2333444668999999999999999999988654
No 33
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=96.47 E-value=0.03 Score=40.21 Aligned_cols=63 Identities=24% Similarity=0.402 Sum_probs=51.3
Q ss_pred EEEEEcCCCCCCCCCeEEEeccCc---cCCccCC-----CcEEccCCC-CCCCCcCCHHHHHHHHHHhhcCC
Q 032689 54 KLTLQFTEDYPNKPPTVRFVSRMF---HPNIYAD-----GSICLDILQ-NQWSPIYDVAAILTSIQVKLRFD 116 (135)
Q Consensus 54 ~~~i~fp~~YP~~pP~v~f~t~i~---HpnV~~~-----G~icl~~l~-~~W~p~~~i~~il~~i~~ll~~~ 116 (135)
.+.|.|+.+||..+|.|.++.+.| +||+... ..+|+.-.. ..|.++.+++.+|..|...|..-
T Consensus 56 ~~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~~~~~~p~~lCl~~~~~~e~~~~~g~~~~l~rl~~Wl~~a 127 (162)
T PF14457_consen 56 RVAIVFPPDSPLSAPEVPALRKDFPGNLPHQNPGPEGEPVSLCLYEGPWSEWRPSWGPEGFLDRLFDWLRDA 127 (162)
T ss_pred eEEEEecCCCCCCCccchhhHhhCCCCCCccCCCCCCCCccceEecCCHHHhhhccCHHHHHHHHHHHHHHH
Confidence 367899999999999888886544 5888755 789985553 56999999999999999998753
No 34
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=95.88 E-value=0.076 Score=34.47 Aligned_cols=26 Identities=19% Similarity=0.586 Sum_probs=22.6
Q ss_pred CCEEEEEEEcCCCCCCCCCeEEEecc
Q 032689 50 GGTFKLTLQFTEDYPNKPPTVRFVSR 75 (135)
Q Consensus 50 gg~f~~~i~fp~~YP~~pP~v~f~t~ 75 (135)
...+.+.+.+|++||..+|.|.+.+.
T Consensus 40 ~~~~~l~~~~p~~YP~~~P~i~~~~~ 65 (107)
T smart00591 40 YVSLTLQVKLPENYPDEAPPISLLNS 65 (107)
T ss_pred ceEEEEEEECCCCCCCCCCCeEEECC
Confidence 45689999999999999999988764
No 35
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=93.72 E-value=0.1 Score=40.88 Aligned_cols=86 Identities=19% Similarity=0.358 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEeccCccCCccCCC
Q 032689 6 KKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADG 85 (135)
Q Consensus 6 ~~Rl~kEl~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~~G 85 (135)
.++|.+|+.++..+... .+. .++++....+.+.. ++....+++.++.+||.++|.+...-++
T Consensus 101 ys~ll~EIe~IGW~kl~--~i~-~d~~ls~i~l~~~D------~~R~H~l~l~l~~~yp~~~p~~~~~~P~--------- 162 (291)
T PF09765_consen 101 YSNLLKEIEAIGWDKLV--QIQ-FDDDLSTIKLKIFD------SSRQHYLELKLPSNYPFEPPSCSLDLPI--------- 162 (291)
T ss_dssp C-CHHHHHHHHHCGCCE--EEE-E-CCCSEEEEEEET------TCEEEEEEEETTTTTTTSEEEECS-TTS---------
T ss_pred HHHHHHHHHHhccccce--EEe-cCCCccEEEEEEEc------CCceEEEEEEECCCCCCCCceeeCCCCc---------
Confidence 46788888888765542 222 35778888777762 1257789999999999999975333222
Q ss_pred cEEccCCCCCCCC-cCCHHHHHHHHHHhhc
Q 032689 86 SICLDILQNQWSP-IYDVAAILTSIQVKLR 114 (135)
Q Consensus 86 ~icl~~l~~~W~p-~~~i~~il~~i~~ll~ 114 (135)
.+...|.+ ..++.+++.+.+..|.
T Consensus 163 -----~~~~~w~~~~ssL~~v~~qF~~~le 187 (291)
T PF09765_consen 163 -----PFSLSWSPSQSSLKDVVQQFQEALE 187 (291)
T ss_dssp ------HHHHHHCHT-SHHHHHHHHHHHHH
T ss_pred -----chhhhhcccccCHHHHHHHHHHHHH
Confidence 11235998 6789999888877765
No 36
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=86.13 E-value=4.2 Score=36.13 Aligned_cols=67 Identities=16% Similarity=0.277 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEeCCCCCCCCCC-EEEEEEEcCCCCCCC-CCeEEEecc
Q 032689 7 KRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGG-TFKLTLQFTEDYPNK-PPTVRFVSR 75 (135)
Q Consensus 7 ~Rl~kEl~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg-~f~~~i~fp~~YP~~-pP~v~f~t~ 75 (135)
+-|.+|+.-|-. .-+.+.++-.+---..-.+.+.+|--. -.|- ..++.|.||.+||.+ +|.++|..+
T Consensus 423 QnLgeE~S~Ig~-k~~nV~fEkidva~Rsctvsln~p~~~-~d~y~flrm~V~FP~nYPn~a~P~Fq~e~~ 491 (1081)
T KOG0309|consen 423 QNLGEEFSLIGV-KIRNVNFEKIDVADRSCTVSLNCPNHR-VDDYIFLRMLVKFPANYPNNAAPSFQFENP 491 (1081)
T ss_pred hhHHhHHhHhhc-cccccceEeeccccceEEEEecCCCCc-cccceeEEEEEeccccCCCCCCCceEEecC
Confidence 345666665532 223344443333334455666665532 2333 357899999999986 899999853
No 37
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=81.81 E-value=6.4 Score=29.55 Aligned_cols=22 Identities=32% Similarity=0.751 Sum_probs=19.3
Q ss_pred EEEEEEEcCCCCCCCCCeEEEe
Q 032689 52 TFKLTLQFTEDYPNKPPTVRFV 73 (135)
Q Consensus 52 ~f~~~i~fp~~YP~~pP~v~f~ 73 (135)
.+.+.+.++.+||.+||-+.+.
T Consensus 50 ~~~l~~s~tEnYPDe~Pli~~~ 71 (215)
T KOG4018|consen 50 SFILVFSLTENYPDEAPLIEAF 71 (215)
T ss_pred cEEEEEEccCCCCCCCcceecc
Confidence 7889999999999999999433
No 38
>PF14460 Prok-E2_D: Prokaryotic E2 family D
Probab=76.66 E-value=6.1 Score=28.50 Aligned_cols=42 Identities=21% Similarity=0.448 Sum_probs=23.5
Q ss_pred ccCcc---CCccCCCcEEccCCCCCCCCcCCHHHHHHHHH-HhhcCCCC
Q 032689 74 SRMFH---PNIYADGSICLDILQNQWSPIYDVAAILTSIQ-VKLRFDFS 118 (135)
Q Consensus 74 t~i~H---pnV~~~G~icl~~l~~~W~p~~~i~~il~~i~-~ll~~~~~ 118 (135)
|++|| +||+.+|+||+.... .|.....+-+.... .+|.++..
T Consensus 90 T~Ly~aPf~NV~~~g~vC~G~~~---~P~~~~~~~i~~we~~Ff~S~ft 135 (175)
T PF14460_consen 90 TPLYHAPFFNVYSNGSVCWGNNS---LPKISTLASIEAWEDAFFNSPFT 135 (175)
T ss_pred CeeEeCCccccCCCCcEeeCCCc---CCCccCHHHHHHHHHHHhCCCcc
Confidence 34555 699999999997642 23332223344443 44555443
No 39
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=72.35 E-value=25 Score=28.25 Aligned_cols=68 Identities=22% Similarity=0.445 Sum_probs=46.6
Q ss_pred CceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEe-ccCccCCccCCCcEEccCCCCCCCCcC--CHHHHHHHH
Q 032689 33 IMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFV-SRMFHPNIYADGSICLDILQNQWSPIY--DVAAILTSI 109 (135)
Q Consensus 33 ~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~-t~i~HpnV~~~G~icl~~l~~~W~p~~--~i~~il~~i 109 (135)
...+.+.| ||.|...+-+|.|...||..||-+.|- ..-|+|-... + ..| .+|++.- .+-.++..+
T Consensus 53 ~DRF~l~I------Py~~~~l~W~viFd~~~p~~pPDfiF~eD~~F~pd~s~---l--~~L-~~Wd~~dp~~Ll~li~EL 120 (333)
T PF06113_consen 53 CDRFKLLI------PYCGEYLKWDVIFDAQYPEFPPDFIFGEDDNFLPDPSK---L--PSL-VNWDPSDPNCLLNLISEL 120 (333)
T ss_pred cceEEEEe------eccCCEEEEEEEEcCCCCCCCCCEEeCCCcCcCCChhh---c--chh-hcCCCCCchHHHHHHHHH
Confidence 34555555 799999999999999999999999996 3347774321 1 111 3698775 455666555
Q ss_pred HHh
Q 032689 110 QVK 112 (135)
Q Consensus 110 ~~l 112 (135)
..+
T Consensus 121 ~~~ 123 (333)
T PF06113_consen 121 RQL 123 (333)
T ss_pred HHH
Confidence 443
No 40
>TIGR03737 PRTRC_B PRTRC system protein B. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This protein family is designated protein B.
Probab=68.61 E-value=7.9 Score=29.39 Aligned_cols=34 Identities=21% Similarity=0.475 Sum_probs=22.2
Q ss_pred cCcc---CCccCCCcEEccCCCCCCCCcC-CHHHHHHHHHHh
Q 032689 75 RMFH---PNIYADGSICLDILQNQWSPIY-DVAAILTSIQVK 112 (135)
Q Consensus 75 ~i~H---pnV~~~G~icl~~l~~~W~p~~-~i~~il~~i~~l 112 (135)
+.|| .||+.+|+||+.... .|.. ++.+ +.+....
T Consensus 132 ~L~~aPffNV~~~G~VC~G~~~---~P~~~~~~~-i~~we~~ 169 (228)
T TIGR03737 132 KLYQAPLFNVWSNGEICAGNAR---LPDRPTVAN-ISAWEDA 169 (228)
T ss_pred eeccCCcCccCCCCeEeeCCCc---CCCCcCHHH-HHHHHHH
Confidence 3555 589999999997664 4543 4555 5555554
No 41
>smart00340 HALZ homeobox associated leucin zipper.
Probab=60.21 E-value=8.9 Score=21.34 Aligned_cols=16 Identities=19% Similarity=0.403 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHhhCC
Q 032689 5 AKKRLMRDFKRLQQDP 20 (135)
Q Consensus 5 a~~Rl~kEl~~l~~~~ 20 (135)
-.+||++|+++|....
T Consensus 20 eNrRL~ke~~eLralk 35 (44)
T smart00340 20 ENRRLQKEVQELRALK 35 (44)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 3589999999997544
No 42
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=55.69 E-value=21 Score=24.87 Aligned_cols=26 Identities=23% Similarity=0.632 Sum_probs=23.0
Q ss_pred CCCEEEEEEEcCCCCC-CCCCeEEEec
Q 032689 49 DGGTFKLTLQFTEDYP-NKPPTVRFVS 74 (135)
Q Consensus 49 ~gg~f~~~i~fp~~YP-~~pP~v~f~t 74 (135)
+.|.|.|.-..|-.|| ..||.|.|.-
T Consensus 64 ~~G~y~f~ti~Pg~Y~~~R~~HiH~~V 90 (146)
T cd00421 64 ADGRYRFRTIKPGPYPIGRPPHIHFKV 90 (146)
T ss_pred CCcCEEEEEEcCCCCCCCCCCEEEEEE
Confidence 4588999999999999 9999998873
No 43
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=47.65 E-value=32 Score=25.21 Aligned_cols=26 Identities=23% Similarity=0.457 Sum_probs=23.1
Q ss_pred CCCEEEEEEEcCCCCCCCCCeEEEec
Q 032689 49 DGGTFKLTLQFTEDYPNKPPTVRFVS 74 (135)
Q Consensus 49 ~gg~f~~~i~fp~~YP~~pP~v~f~t 74 (135)
+.|.|.|.=.+|--||..||.|.|.-
T Consensus 85 ~~G~~~F~TI~PG~Y~gR~~HIH~~V 110 (188)
T cd03457 85 ADGVVTFTTIFPGWYPGRATHIHFKV 110 (188)
T ss_pred CCccEEEEEECCCCCCCCCceEEEEE
Confidence 46789999999999999999999874
No 44
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=46.38 E-value=28 Score=27.74 Aligned_cols=25 Identities=28% Similarity=0.526 Sum_probs=22.4
Q ss_pred CEEEEEEEcCCCCCCCCCeEEEecc
Q 032689 51 GTFKLTLQFTEDYPNKPPTVRFVSR 75 (135)
Q Consensus 51 g~f~~~i~fp~~YP~~pP~v~f~t~ 75 (135)
-++.+.+..++.||...|+|....|
T Consensus 45 vcvtl~m~vs~gYP~esPtvtl~nP 69 (368)
T KOG4445|consen 45 VCVTLEMTVSEGYPAESPTVTLSNP 69 (368)
T ss_pred EEEEEEEecCCCCCCcCCceEecCC
Confidence 4678999999999999999999876
No 45
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=42.65 E-value=44 Score=23.75 Aligned_cols=26 Identities=15% Similarity=0.414 Sum_probs=22.6
Q ss_pred CCCEEEEEEEcCCCCC-----CCCCeEEEec
Q 032689 49 DGGTFKLTLQFTEDYP-----NKPPTVRFVS 74 (135)
Q Consensus 49 ~gg~f~~~i~fp~~YP-----~~pP~v~f~t 74 (135)
+.|.|.|.=.+|--|| ..||.|.|.-
T Consensus 71 ~~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~V 101 (158)
T cd03459 71 ADGRYRFRTIKPGAYPWRNGAWRAPHIHVSV 101 (158)
T ss_pred CCCcEEEEEECCCCcCCCCCCCcCCEEEEEE
Confidence 3578999999999999 8999998874
No 46
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.
Probab=42.37 E-value=87 Score=19.77 Aligned_cols=42 Identities=21% Similarity=0.350 Sum_probs=27.2
Q ss_pred ceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEeccCc
Q 032689 34 MLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMF 77 (135)
Q Consensus 34 ~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 77 (135)
.+|.+.+.|+.+.--..-.=++.+.+.++|+. |...+..+.|
T Consensus 2 h~W~v~Vr~~~~~d~~~~i~kV~f~LHpsF~~--p~r~v~~pPF 43 (84)
T PF03366_consen 2 HKWTVYVRGLDNEDLSYFIKKVTFKLHPSFPN--PVRVVTKPPF 43 (84)
T ss_dssp EEEEEEEEECCCT--TTTEEEEEEES-TTSSS---EEECSSTTE
T ss_pred cEEEEEEEeCCCCCccceEEEEEEECCCCCCC--CceEecCCCC
Confidence 47999999888754445566788888888876 6655555543
No 47
>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=42.33 E-value=33 Score=25.75 Aligned_cols=60 Identities=23% Similarity=0.257 Sum_probs=48.0
Q ss_pred CCCCCeEEEeccCccCCcc--CCCcEEccCCCCCC--CCcCCHHHHHHHHHHhhcCCCCCCccc
Q 032689 64 PNKPPTVRFVSRMFHPNIY--ADGSICLDILQNQW--SPIYDVAAILTSIQVKLRFDFSCSFLS 123 (135)
Q Consensus 64 P~~pP~v~f~t~i~HpnV~--~~G~icl~~l~~~W--~p~~~i~~il~~i~~ll~~~~~~~~~~ 123 (135)
=..||.|.|-.+.|.--|+ +-|.|--++.+.+| -|..++.+-|..|-.+|-.|+.++-++
T Consensus 166 wyrppdvlfgakly~tsidmwsagcifaelanagrplfpg~dvddqlkrif~~lg~p~ed~wps 229 (292)
T KOG0662|consen 166 WYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEDQWPS 229 (292)
T ss_pred eccCcceeeeeehhccchHhhhcchHHHHHhhcCCCCCCCCcHHHHHHHHHHHhCCCccccCCc
Confidence 3579999999999998887 66766666666666 688889999999999998888776554
No 48
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=40.87 E-value=41 Score=27.06 Aligned_cols=25 Identities=20% Similarity=0.458 Sum_probs=21.6
Q ss_pred CCEEEEEEEcCCCCCCCCCeEEEec
Q 032689 50 GGTFKLTLQFTEDYPNKPPTVRFVS 74 (135)
Q Consensus 50 gg~f~~~i~fp~~YP~~pP~v~f~t 74 (135)
+-.|-+.|.+|..||...|.+++++
T Consensus 305 ~F~flvHi~Lp~~FP~~qP~ltlqS 329 (333)
T PF06113_consen 305 DFTFLVHISLPIQFPKDQPSLTLQS 329 (333)
T ss_pred CeEEEEEEeccCCCCCcCCeEEEEe
Confidence 3457788999999999999999986
No 49
>KOG3285 consensus Spindle assembly checkpoint protein [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=38.64 E-value=59 Score=23.94 Aligned_cols=42 Identities=19% Similarity=0.339 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEeCCCCC
Q 032689 5 AKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDT 46 (135)
Q Consensus 5 a~~Rl~kEl~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~t 46 (135)
..+|+++|++.+.++....++.-|.-+..-.+.+.++.-+++
T Consensus 120 ~~~~iq~EIraviRQItasVtfLP~Le~~ctFdvLiyTdkD~ 161 (203)
T KOG3285|consen 120 DLKRIQNEIRAVIRQITASVTFLPLLEEICTFDVLIYTDKDT 161 (203)
T ss_pred HHHHHHHHHHHHHHHHhhheeecccccceeEEEEEEEeCCCc
Confidence 468999999999998887787777666666777777654443
No 50
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.26 E-value=54 Score=24.72 Aligned_cols=70 Identities=9% Similarity=0.217 Sum_probs=45.4
Q ss_pred CCCCCCeEEEeccCccCCccCCCcEEccCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccc-CCcceEEEE
Q 032689 63 YPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQVKLRFDFSCSFLS-IGKRFCFLF 132 (135)
Q Consensus 63 YP~~pP~v~f~t~i~HpnV~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~~~~~~~~~-~~~~~~~~~ 132 (135)
=+.+|++....|.-|--|.-..+.||-=.+-+.--|.-=..+-|..|..-|.......... ..++|+|+.
T Consensus 45 s~~s~~r~Sietg~f~fHfli~~~Vcylvicd~~yP~kLAF~YLedL~~EF~~~~~~~~~~~~~RPY~Fie 115 (216)
T KOG0862|consen 45 SQQSPTRCSIETGPFVFHFLIESGVCYLVICDKSYPRKLAFSYLEDLAQEFDKSYGKNIIQPASRPYAFIE 115 (216)
T ss_pred cCCCCcccccccCCeEEEEEecCCEEEEEEecCCCcHHHHHHHHHHHHHHHHHhcccccCCccCCCeeEEe
Confidence 3445677777766544444445566654555666666666666777777666666555555 889999986
No 51
>PF00845 Gemini_BL1: Geminivirus BL1 movement protein; InterPro: IPR000211 The movement of bipartite Geminiviruses such as squash leaf curl virus (SqLCV) requires the cooperative interaction of two essential virus-encoded movement proteins, BR1 and BL1. Recent studies of SqLCV and bean dwarf mosaic virus have shown that BR1 and BL1 act in a cooperative manner to move the viral genome intracellularly from the nucleus to the cytoplasm and across the wall cell to cell. BR1 is a nuclear shuttle protein, and it has been proposed to bind newly replicated viral ssDNA genomes and move these between the nucleus and cytoplasm. These BR1-genome complexes are then directed to the cell periphery through interactions between BR1 and BL1, where, as the result of BL1 action, the complexes are moved to adjacent uninfected cells. The precise mechanism by which BL1 acts to transport these genome complexes across the cell wall, and whether this may differ in different cell types, remains at issue [].; GO: 0003677 DNA binding, 0046740 spread of virus in host, cell to cell, 0033644 host cell membrane
Probab=31.48 E-value=1.2e+02 Score=23.42 Aligned_cols=47 Identities=26% Similarity=0.492 Sum_probs=30.0
Q ss_pred CCceeEEEEeCCCCCCCCC---CEEEEEEEcC-----CCCCCCCCeEEEeccCcc
Q 032689 32 NIMLWNAVIFGPDDTPWDG---GTFKLTLQFT-----EDYPNKPPTVRFVSRMFH 78 (135)
Q Consensus 32 ~~~~w~~~i~gp~~tpy~g---g~f~~~i~fp-----~~YP~~pP~v~f~t~i~H 78 (135)
|..-|.+.....+....+| ..|+.+++++ .|-||+||+|..+++-|.
T Consensus 101 Dp~PWkl~YrV~DtNV~~~thFak~kgKLKLStAKHS~DI~Fr~PtikILSK~ft 155 (276)
T PF00845_consen 101 DPIPWKLYYRVEDTNVHQGTHFAKFKGKLKLSTAKHSVDIPFRAPTIKILSKQFT 155 (276)
T ss_pred CCCCeEEEEEeecCccccceeeeeeeceeeecccccccccccCCCceEeeecccC
Confidence 4445776665333222222 2366667665 688999999999988653
No 52
>PF04881 Adeno_GP19K: Adenovirus GP19K; InterPro: IPR006965 This 19 kDa glycoprotein binds the major histocompatibility (MHC) class I antigens in the endoplasmic reticulum (ER). The ER retention signal at the C terminus of Gp19K causes retention of the complex in the ER, preventing lysis of the cell by cytotoxic T-lymphocytes [].; GO: 0005537 mannose binding, 0050690 regulation of defense response to virus by virus
Probab=31.12 E-value=93 Score=21.63 Aligned_cols=31 Identities=23% Similarity=0.403 Sum_probs=20.6
Q ss_pred cCCCCceeEEEEeCCCCCCCC-CCEEEEEEEc
Q 032689 29 QDNNIMLWNAVIFGPDDTPWD-GGTFKLTLQF 59 (135)
Q Consensus 29 ~~~~~~~w~~~i~gp~~tpy~-gg~f~~~i~f 59 (135)
...|...|.|++.|++||+.. ..+|-+.+.|
T Consensus 43 qPGd~~~ytVtV~G~dGs~~~~n~tf~~~FiF 74 (139)
T PF04881_consen 43 QPGDPEWYTVTVQGPDGSIRKSNNTFMYKFIF 74 (139)
T ss_pred cCCCCcceEEEEECCCCcceeccccchheeeH
Confidence 345667788999999988765 3444444444
No 53
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=30.98 E-value=22 Score=26.26 Aligned_cols=29 Identities=21% Similarity=0.399 Sum_probs=23.6
Q ss_pred CCcEEccCCCCCCCCcCCHHHHHHHHHHh
Q 032689 84 DGSICLDILQNQWSPIYDVAAILTSIQVK 112 (135)
Q Consensus 84 ~G~icl~~l~~~W~p~~~i~~il~~i~~l 112 (135)
.+..|++++...|+|.+|++.-+.-++..
T Consensus 135 ~~~f~~sIlDr~Y~pdmt~eea~~lmkKC 163 (200)
T KOG0177|consen 135 GSYFCLSILDRYYKPDMTIEEALDLMKKC 163 (200)
T ss_pred hhhhhHHHHHhhhCCCCCHHHHHHHHHHH
Confidence 56799999999999999998876555443
No 54
>PHA03200 uracil DNA glycosylase; Provisional
Probab=30.74 E-value=56 Score=25.30 Aligned_cols=58 Identities=22% Similarity=0.322 Sum_probs=33.1
Q ss_pred CCceeEEEEeCCCCCCCCCCEE-EEEEEcCCCCCCCCCeEEEec-----------cCccCCcc---CCCcEEccCC
Q 032689 32 NIMLWNAVIFGPDDTPWDGGTF-KLTLQFTEDYPNKPPTVRFVS-----------RMFHPNIY---ADGSICLDIL 92 (135)
Q Consensus 32 ~~~~w~~~i~gp~~tpy~gg~f-~~~i~fp~~YP~~pP~v~f~t-----------~i~HpnV~---~~G~icl~~l 92 (135)
...+.+|+|.|.+ ||.+|.= =+.+..+++++. ||..+=.- ..-|.+.. ..|.+.|+..
T Consensus 81 p~~~vKVVIlGQD--PYh~gqA~GLaFSV~~~~~~-PpSL~NIfKEL~~d~~g~~~p~~G~L~~WAkQGVLLLNtv 153 (255)
T PHA03200 81 SPEDVKVVIVGQD--PYHDGSACGLAFGTVRGRSA-PPSLKNVFRELERTVPNFSRPDSGCLDSWCRQGVLLLNTV 153 (255)
T ss_pred ChhheEEEEEecC--CCCCCccceEEEEeCCCCCC-CccHHHHHHHHHhhcCCCCCCCCCChhhHHhCCEEEEeee
Confidence 3456799999976 7877542 233445666653 66543221 11244443 5788877655
No 55
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=30.34 E-value=1.5e+02 Score=19.15 Aligned_cols=26 Identities=12% Similarity=0.189 Sum_probs=20.3
Q ss_pred CCCCEEEEEEEcCCCCCCCCCeEEEecc
Q 032689 48 WDGGTFKLTLQFTEDYPNKPPTVRFVSR 75 (135)
Q Consensus 48 y~gg~f~~~i~fp~~YP~~pP~v~f~t~ 75 (135)
-||..+.|.-.-|+.|| +|.|.+.+.
T Consensus 16 ~eG~~~~L~C~pP~g~P--~P~i~W~~~ 41 (95)
T cd05845 16 EEGDSVVLPCNPPKSAV--PLRIYWMNS 41 (95)
T ss_pred ecCCCEEEEecCCCCCC--CCEEEEECC
Confidence 35667788877889999 599998864
No 56
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=30.28 E-value=83 Score=23.17 Aligned_cols=25 Identities=16% Similarity=0.425 Sum_probs=21.3
Q ss_pred CCCEEEEEEEcCCCCCC-----CCCeEEEe
Q 032689 49 DGGTFKLTLQFTEDYPN-----KPPTVRFV 73 (135)
Q Consensus 49 ~gg~f~~~i~fp~~YP~-----~pP~v~f~ 73 (135)
+.|.|.|.=..|-.||. .||.|.|.
T Consensus 95 ~~G~y~f~TI~Pg~Yp~~~g~~R~~HiH~~ 124 (193)
T TIGR02423 95 ESGEFTFETVKPGAVPDRDGVLQAPHINVS 124 (193)
T ss_pred CCCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 45779999999999998 88888776
No 57
>PF12065 DUF3545: Protein of unknown function (DUF3545); InterPro: IPR021932 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 60 to 77 amino acids in length. This protein has two completely conserved residues (R and L) that may be functionally important.
Probab=29.59 E-value=42 Score=20.02 Aligned_cols=12 Identities=17% Similarity=0.653 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHh
Q 032689 6 KKRLMRDFKRLQ 17 (135)
Q Consensus 6 ~~Rl~kEl~~l~ 17 (135)
.+||++||+++.
T Consensus 36 r~rL~kEL~d~D 47 (59)
T PF12065_consen 36 RQRLRKELQDMD 47 (59)
T ss_pred HHHHHHHHHHcc
Confidence 479999999985
No 58
>PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A ....
Probab=29.37 E-value=53 Score=19.42 Aligned_cols=20 Identities=15% Similarity=0.436 Sum_probs=13.2
Q ss_pred CCCCcCCHHHHHHHHHHhhc
Q 032689 95 QWSPIYDVAAILTSIQVKLR 114 (135)
Q Consensus 95 ~W~p~~~i~~il~~i~~ll~ 114 (135)
+|.|.++|++++........
T Consensus 37 gW~p~~~L~~~i~~~w~W~~ 56 (62)
T PF13950_consen 37 GWKPKYSLEDMIRDAWNWQK 56 (62)
T ss_dssp ----SSSHHHHHHHHHHHHH
T ss_pred CCCcCCCHHHHHHHHHHHHH
Confidence 69999999999988777543
No 59
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=28.30 E-value=1.4e+02 Score=24.96 Aligned_cols=15 Identities=27% Similarity=0.552 Sum_probs=12.5
Q ss_pred EEEEEEEcCCCCCCC
Q 032689 52 TFKLTLQFTEDYPNK 66 (135)
Q Consensus 52 ~f~~~i~fp~~YP~~ 66 (135)
...+.+.||.+|+..
T Consensus 210 ~k~i~vtFP~dy~a~ 224 (441)
T COG0544 210 EKDIKVTFPEDYHAE 224 (441)
T ss_pred eeEEEEEcccccchh
Confidence 466889999999975
No 60
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=27.16 E-value=1e+02 Score=22.51 Aligned_cols=24 Identities=21% Similarity=0.389 Sum_probs=20.0
Q ss_pred CCEEEEEEEcCCCCCC-----CCCeEEEe
Q 032689 50 GGTFKLTLQFTEDYPN-----KPPTVRFV 73 (135)
Q Consensus 50 gg~f~~~i~fp~~YP~-----~pP~v~f~ 73 (135)
.|.|.|.=.+|--||. .||.|.|.
T Consensus 92 ~G~y~F~Ti~Pg~Y~~~~g~~R~~HIH~~ 120 (185)
T cd03463 92 DGRFSFTTVKPGAVPGRDGAGQAPHINVW 120 (185)
T ss_pred CCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 4779999999999995 78887765
No 61
>PF00779 BTK: BTK motif; InterPro: IPR001562 The Btk-type zinc finger or Btk motif (BM) is a conserved zinc-binding motif containing conserved cysteines and a histidine that is present in certain eukaryotic signalling proteins. The motif is named after Bruton's tyrosine kinase (Btk), an enzyme which is essential for B cell maturation in humans and mice [, ]. Btk is a member of the Tec family of protein tyrosine kinases (PTK). These kinases contain a conserved Tec homology (TH) domain between the N-terminal pleckstrin homology (PH) domain (IPR001849 from INTERPRO) and the Src homology 3 (SH3) domain (IPR001452 from INTERPRO). The N-terminal of the TH domain is highly conserved and known as the Btf motif, while the C-terminal region of the TH domain contains a proline-rich region (PRR). The Btk motif contains a conserved His and three Cys residues that form a zinc finger (although these differ from known zinc finger topologies), while PRRs are commonly involved in protein-protein interactions, including interactions with G proteins [, ]. The TH domain may be of functional importance in various signalling pathways in different species []. A complete TH domain, containing both the Btk and PRR regions, has not been found outside the Tec family; however, the Btk motif on its own does occur in other proteins, usually C-terminal to a PH domain (note that although a Btk motif always occurs C-terminal to a PH domain, not all PH domains are followed by a Btk motif). The crystal structures of Btk show that the Btk-type zinc finger has a globular core, formed by a long loop which is held together by a zinc ion, and that the Btk motif is packed against the PH domain []. The zinc-binding residues are a histidine and three cysteines, which are fully conserved in the Btk motif []. Proteins known to contain a Btk-type zinc finger include: Mammalian Bruton's tyrosine kinase (Btk), a protein tyrosine kinase involved in modulation of diverse cellular processes. Mutations affecting Btk are the cause of X-linked agammaglobulinemia (XLA) in humans and X-linked immunodeficiency in mice. Mammalian Tec, Bmx, and Itk proteins, which are tyrosine protein kinases of the Tec subfamily. Drosophila tyrosine-protein kinase Btk29A, which is required for the development of proper ring canals and of male genitalia and required for adult survival. Mammalian Ras GTPase-activating proteins (RasGAP), which regulate the activation of inactive GDP-bound Ras by converting GDP to GTP. ; GO: 0035556 intracellular signal transduction; PDB: 2E6I_A 2YS2_A 2Z0P_A 1B55_A 1BTK_B 1BWN_A.
Probab=26.20 E-value=23 Score=18.36 Aligned_cols=14 Identities=29% Similarity=0.952 Sum_probs=8.4
Q ss_pred CccCCccCCCc-EEc
Q 032689 76 MFHPNIYADGS-ICL 89 (135)
Q Consensus 76 i~HpnV~~~G~-icl 89 (135)
.|||.++.+|+ .|-
T Consensus 2 ~yHPg~~~~g~W~CC 16 (32)
T PF00779_consen 2 KYHPGAWRGGKWLCC 16 (32)
T ss_dssp EE-SS-EETTCESSS
T ss_pred CcCCCcccCCcCcCC
Confidence 48999997765 553
No 62
>PRK15486 hpaC 4-hydroxyphenylacetate 3-monooxygenase reductase subunit; Provisional
Probab=25.49 E-value=43 Score=24.06 Aligned_cols=69 Identities=16% Similarity=0.317 Sum_probs=42.5
Q ss_pred HHHHHHHHhhCCCCCeEEEecCCCCceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEe---ccCccCCccCCC
Q 032689 9 LMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFV---SRMFHPNIYADG 85 (135)
Q Consensus 9 l~kEl~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~---t~i~HpnV~~~G 85 (135)
+..++++....-..|+++....++ +.+ .|-+-.--..+ -.+||.|.+. +..-|+-+..+|
T Consensus 6 ~~~~fr~am~~~a~GV~VVTt~~~------------~~~-~G~Tvss~~Sv----SldPPlvlv~l~~~s~~~~~i~~sg 68 (170)
T PRK15486 6 QRLRFRDAMASLSAAVNIVTTAGD------------AGR-CGITATAVCSV----TDTPPSVMVCINANSAMNPVFQGNG 68 (170)
T ss_pred hHHHHHHHHhccCCceEEEEEecC------------CCc-EEEEEEEEEEe----EcCCCEEEEEECCCCchhHHHHhCC
Confidence 445788888888888887643211 111 12111111111 2469998886 346688888999
Q ss_pred cEEccCCCC
Q 032689 86 SICLDILQN 94 (135)
Q Consensus 86 ~icl~~l~~ 94 (135)
..|+++|.+
T Consensus 69 ~F~VnvL~~ 77 (170)
T PRK15486 69 KLCINVLNH 77 (170)
T ss_pred eEEEEEChh
Confidence 999999964
No 63
>PF07380 Pneumo_M2: Pneumovirus M2 protein; InterPro: IPR009969 This family consists of several Pneumovirus M2 proteins. The M2-1 protein of respiratory syncytial virus (RSV) is a transcription processivity factor that is essential for virus replication [].
Probab=23.38 E-value=1.8e+02 Score=18.49 Aligned_cols=57 Identities=14% Similarity=0.208 Sum_probs=32.9
Q ss_pred EEEcCCCCCCCCCeEEEecc--C---ccCCcc------CCCcEEccCC-CC--CCCCcCCHHHHHHHHHHh
Q 032689 56 TLQFTEDYPNKPPTVRFVSR--M---FHPNIY------ADGSICLDIL-QN--QWSPIYDVAAILTSIQVK 112 (135)
Q Consensus 56 ~i~fp~~YP~~pP~v~f~t~--i---~HpnV~------~~G~icl~~l-~~--~W~p~~~i~~il~~i~~l 112 (135)
-+.||+.||-+--.+...+. + -|.|+- .+..+|..-. .+ -|++.-=+.++..-++.+
T Consensus 6 ImIlPdKYPCSIsSiLI~s~~~v~~~n~kn~L~~nqn~~~nh~ys~N~~fdeIhWTsq~Lid~~q~fLqhl 76 (89)
T PF07380_consen 6 IMILPDKYPCSISSILITSECRVTMYNHKNTLYFNQNNYNNHMYSPNHMFDEIHWTSQDLIDATQNFLQHL 76 (89)
T ss_pred EEEcCCCCCceeeEEEEeccceeEEEeccchhhhhccCCCccccccCccchhhccchHHHHHHHHHHHHHc
Confidence 46799999998777766643 1 255541 2334554222 12 388766666665555544
No 64
>PF14135 DUF4302: Domain of unknown function (DUF4302)
Probab=23.29 E-value=2.6e+02 Score=20.88 Aligned_cols=15 Identities=7% Similarity=0.266 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHhh
Q 032689 4 PAKKRLMRDFKRLQQ 18 (135)
Q Consensus 4 ~a~~Rl~kEl~~l~~ 18 (135)
++..||.+.++++++
T Consensus 9 s~~eR~~e~~~~~k~ 23 (235)
T PF14135_consen 9 SPAERINEALAEYKK 23 (235)
T ss_pred CHHHHHHHHHHHHHH
Confidence 456788876666653
No 65
>TIGR02296 HpaC 4-hydroxyphenylacetate 3-monooxygenase, reductase component. These reductases catalyze the reduction of free flavins by NADPH. The flavin is then utilized by the large subunit of the monooxygenase.
Probab=22.92 E-value=41 Score=23.54 Aligned_cols=30 Identities=27% Similarity=0.722 Sum_probs=24.5
Q ss_pred CCCCeEEEe---ccCccCCccCCCcEEccCCCC
Q 032689 65 NKPPTVRFV---SRMFHPNIYADGSICLDILQN 94 (135)
Q Consensus 65 ~~pP~v~f~---t~i~HpnV~~~G~icl~~l~~ 94 (135)
.+||.|.+. ...-|+.+..+|..|+++|.+
T Consensus 36 ~~PP~v~v~l~~~s~t~~~i~~~g~F~VnvL~~ 68 (154)
T TIGR02296 36 DTPPTVMVCINRNSAMNPIFQENGKLCINVLAH 68 (154)
T ss_pred cCCCEEEEEECCCCchhHHHHhCCeEEEEECcH
Confidence 579999886 345688888999999999964
No 66
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=22.82 E-value=90 Score=27.05 Aligned_cols=29 Identities=28% Similarity=0.620 Sum_probs=24.0
Q ss_pred CCCCCCEEEEEEEcCCCCCC---CCCeEEEecc
Q 032689 46 TPWDGGTFKLTLQFTEDYPN---KPPTVRFVSR 75 (135)
Q Consensus 46 tpy~gg~f~~~i~fp~~YP~---~pP~v~f~t~ 75 (135)
+||.=|.|.+ +.+|++||+ +-|.+.|+|+
T Consensus 248 GpY~WgryDl-lvlPpSFP~gGMENPcltF~Tp 279 (613)
T KOG1047|consen 248 GPYVWGRYDL-LVLPPSFPFGGMENPCLTFVTP 279 (613)
T ss_pred CCcccccceE-EEecCCCCcccccCcceeeecc
Confidence 4788888985 668899997 4799999996
No 67
>PF05751 FixH: FixH; InterPro: IPR008620 This family consists of several Rhizobium FixH like proteins. It has been suggested that the four proteins FixG, FixH, FixI, and FixS may participate in a membrane-bound complex coupling the FixI cation pump with a redox process catalysed by FixG [].
Probab=22.47 E-value=2.5e+02 Score=18.84 Aligned_cols=54 Identities=15% Similarity=0.195 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEeCCCCCCCCCCEEEEEEEcCC
Q 032689 7 KRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTE 61 (135)
Q Consensus 7 ~Rl~kEl~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~ 61 (135)
+...+++.+.++...-|+.+...-++ ....+.+.-+.|.|..+....+.+.-|.
T Consensus 43 ~~y~~~i~~~~~a~~lg~~~~~~~~~-~~~~i~~~d~~g~~~~~~~~~l~l~rp~ 96 (146)
T PF05751_consen 43 LAYNQDIDRERAAEALGWKAELTIDD-NSLTIRLTDPNGAPVSGAKLTLSLYRPT 96 (146)
T ss_pred hhhhhhhHHHHHHHhcCccceeeecC-CeEEEEEEcCCCCcCcCceEEEEEECCC
Confidence 34555555555555556665543222 3344445446677777777777666654
No 68
>COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=21.54 E-value=1.6e+02 Score=22.89 Aligned_cols=29 Identities=14% Similarity=0.480 Sum_probs=25.7
Q ss_pred CCCCCCEEEEEEEcCCCCCCCC--CeEEEec
Q 032689 46 TPWDGGTFKLTLQFTEDYPNKP--PTVRFVS 74 (135)
Q Consensus 46 tpy~gg~f~~~i~fp~~YP~~p--P~v~f~t 74 (135)
+.+.|..|++.+..|.+||-.- |.|.++.
T Consensus 16 s~~~~~~yri~i~~P~~~~~~~~YpVlY~lD 46 (264)
T COG2819 16 SANTGRKYRIFIATPKNYPKPGGYPVLYMLD 46 (264)
T ss_pred ecCCCcEEEEEecCCCCCCCCCCCcEEEEec
Confidence 4677899999999999999887 9999985
No 69
>PF02970 TBCA: Tubulin binding cofactor A; InterPro: IPR004226 The folding pathway of tubulins includes highly specific interactions with a series of cofactors (A, B, C, D and E) after they are released from the eukaryotic chaperonin CCT. Cofactors A and D capture and stabilise tubulin in a quasi-native conformation. Cofactor E binds to the cofactor D-tubulin complex, and interaction with cofactor C then causes the release of tubulin poypeptides in the native state. This family is the tubulin-specific chaperone A.; GO: 0051082 unfolded protein binding, 0007021 tubulin complex assembly, 0005874 microtubule; PDB: 3MXZ_A 1QSD_A 1H7C_A.
Probab=21.45 E-value=1e+02 Score=19.74 Aligned_cols=16 Identities=25% Similarity=0.378 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHHHHhh
Q 032689 3 TPAKKRLMRDFKRLQQ 18 (135)
Q Consensus 3 ~~a~~Rl~kEl~~l~~ 18 (135)
+.+.+||.||+....+
T Consensus 6 t~~vkRL~KE~~~Y~k 21 (90)
T PF02970_consen 6 TGVVKRLLKEEASYEK 21 (90)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3578999999887654
No 70
>PF11745 DUF3304: Protein of unknown function (DUF3304); InterPro: IPR021733 This is a family of bacterial proteins of unknown function.
Probab=20.47 E-value=48 Score=22.21 Aligned_cols=21 Identities=29% Similarity=0.553 Sum_probs=15.6
Q ss_pred CCCcEEccCCCCCCCCcCCHH
Q 032689 83 ADGSICLDILQNQWSPIYDVA 103 (135)
Q Consensus 83 ~~G~icl~~l~~~W~p~~~i~ 103 (135)
.+|.+|--.+..+|+|.+++.
T Consensus 49 GGg~~CC~~~p~~W~pg~tv~ 69 (118)
T PF11745_consen 49 GGGFTCCVSLPRKWRPGLTVK 69 (118)
T ss_pred CCceEEEEEcCCCCCCCCEEE
Confidence 455667777888999998754
No 71
>KOG2015 consensus NEDD8-activating complex, catalytic component UBA3 [Posttranslational modification, protein turnover, chaperones]
Probab=20.19 E-value=3.5e+02 Score=22.17 Aligned_cols=37 Identities=16% Similarity=0.274 Sum_probs=24.9
Q ss_pred CCCCcCCHHHHHHHHHHhhcCCCCCCcccCCcceEEEE
Q 032689 95 QWSPIYDVAAILTSIQVKLRFDFSCSFLSIGKRFCFLF 132 (135)
Q Consensus 95 ~W~p~~~i~~il~~i~~ll~~~~~~~~~~~~~~~~~~~ 132 (135)
.-+|+.++++||..+..-+.--.|.-...-+ ++|||-
T Consensus 342 ~ispt~tl~~vl~~ls~~~~lk~p~~tt~~~-~~ly~~ 378 (422)
T KOG2015|consen 342 DISPTVTLEDVLNHLSKSFQLKSPALTTAAG-RTLYLS 378 (422)
T ss_pred ccCCcccHHHHHHHhhhhhccCCchhhhhhc-ceEeec
Confidence 4568889999998877665554444444433 888873
Done!