Query 032690
Match_columns 135
No_of_seqs 124 out of 631
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 07:08:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032690.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032690hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayd_A WRKY transcription fact 100.0 2.4E-38 8.2E-43 218.0 3.4 74 18-91 2-75 (76)
2 1wj2_A Probable WRKY transcrip 100.0 4.9E-38 1.7E-42 217.4 3.4 74 18-91 5-78 (78)
3 2rpr_A Flywch-type zinc finger 69.0 1.4 4.7E-05 29.2 0.7 50 28-90 22-74 (87)
4 1cz6_A Protein (androctonin); 39.3 6.9 0.00024 21.0 0.2 8 52-59 16-23 (26)
5 1xiw_B T-cell surface glycopro 21.4 20 0.00067 23.4 -0.0 27 31-57 17-53 (79)
6 1odh_A MGCM1; transcription fa 18.1 94 0.0032 23.7 3.1 14 79-92 146-159 (174)
7 1xiw_A T-cell surface glycopro 14.3 47 0.0016 23.3 0.5 27 31-57 33-78 (105)
8 1igq_A Transcriptional repress 11.8 63 0.0022 20.8 0.5 13 28-40 29-41 (62)
9 1ter_A Tertiapin; toxin; NMR { 11.4 37 0.0013 18.0 -0.5 11 34-44 13-23 (26)
10 2l1s_A Uncharacterized protein 11.4 75 0.0026 21.2 0.9 23 23-45 41-63 (83)
No 1
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=100.00 E-value=2.4e-38 Score=218.04 Aligned_cols=74 Identities=31% Similarity=0.584 Sum_probs=69.5
Q ss_pred ccchhcccccCCCCCCccccccccccccCCCCCccccccccccchhhhhhhhhcCCCCeEEEEEecCCCCCCCC
Q 032690 18 QEMDRRVHRLVLPEDGYEWKKYGQKFIKNIRKFRSYFKCQESSCMAKKRAEWCTSDPTNVRIVYDGVHSHTHHG 91 (135)
Q Consensus 18 ~~~~r~~~~~~~~~DGy~WRKYGQK~ikg~~~pRsYyrCt~~~C~akK~Vqr~~~d~~~~~vtY~G~H~h~~p~ 91 (135)
++.+++.+.+++++|||.|||||||.|||++|||+||||++++|+|+|+|||+.+|+.+|+|||+|+|||+.|.
T Consensus 2 r~~v~t~~~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 75 (76)
T 2ayd_A 2 RIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP 75 (76)
T ss_dssp EEEEEEECSSSCCCCSSCEEEEEEECCTTCSSCEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred eEEEEecCCCCcCCCCchhhhCcccccCCCCCceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence 34566778889999999999999999999999999999999999999999999999999999999999999985
No 2
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=100.00 E-value=4.9e-38 Score=217.43 Aligned_cols=74 Identities=35% Similarity=0.672 Sum_probs=68.1
Q ss_pred ccchhcccccCCCCCCccccccccccccCCCCCccccccccccchhhhhhhhhcCCCCeEEEEEecCCCCCCCC
Q 032690 18 QEMDRRVHRLVLPEDGYEWKKYGQKFIKNIRKFRSYFKCQESSCMAKKRAEWCTSDPTNVRIVYDGVHSHTHHG 91 (135)
Q Consensus 18 ~~~~r~~~~~~~~~DGy~WRKYGQK~ikg~~~pRsYyrCt~~~C~akK~Vqr~~~d~~~~~vtY~G~H~h~~p~ 91 (135)
++++.+.+++++++|||.|||||||.|||++|||+||||++++|+|+|+|||+.+|+.+|+|||+|+|||+.|.
T Consensus 5 ~~~~~t~s~~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 78 (78)
T 1wj2_A 5 SSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA 78 (78)
T ss_dssp ---CCCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred eEEEeccCCCCcCCCCchhhhCcccccCCCcCeeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence 45667778889999999999999999999999999999999999999999999999999999999999999884
No 3
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=68.99 E-value=1.4 Score=29.18 Aligned_cols=50 Identities=16% Similarity=0.379 Sum_probs=31.6
Q ss_pred CCCCCCccccccccccccCCCCCccccccccc---cchhhhhhhhhcCCCCeEEEEEecCCCCCCC
Q 032690 28 VLPEDGYEWKKYGQKFIKNIRKFRSYFKCQES---SCMAKKRAEWCTSDPTNVRIVYDGVHSHTHH 90 (135)
Q Consensus 28 ~~~~DGy~WRKYGQK~ikg~~~pRsYyrCt~~---~C~akK~Vqr~~~d~~~~~vtY~G~H~h~~p 90 (135)
.+.-|||.-.+--+ ...+.|.+|+.. +|.|+=.... + . +.-.+.|||++.
T Consensus 22 ~Lv~~Gy~Y~~~~~------~~~~~yWrC~~~~~~kCrARi~T~~---~-~---~~~~~~HnH~p~ 74 (87)
T 2rpr_A 22 FLVHESFLYRKEKA------AGEKVYWMCRDQARLGCRSRAITQG---H-R---IMVMRSHCHQPD 74 (87)
T ss_dssp EEEETTEEEEEEEE------CSSCEEEEEGGGTTSCCCCEEEEET---T-E---EEECSCCSSCCC
T ss_pred EEEECCEEEEeeec------CCCcEEEEecCCCCCCCCEEEEEcC---C-C---EECCCCcCCCCc
Confidence 45568887775321 123689999973 5999744332 2 1 335789999764
No 4
>1cz6_A Protein (androctonin); peptide, beta sheet, toxin; NMR {Androctonus australis} SCOP: j.3.1.3
Probab=39.28 E-value=6.9 Score=20.96 Aligned_cols=8 Identities=38% Similarity=1.182 Sum_probs=6.5
Q ss_pred cccccccc
Q 032690 52 SYFKCQES 59 (135)
Q Consensus 52 sYyrCt~~ 59 (135)
.||+|++.
T Consensus 16 cyykctnr 23 (26)
T 1cz6_A 16 CYYKCTNR 23 (26)
T ss_dssp CEEEECCC
T ss_pred eEEEccCC
Confidence 59999864
No 5
>1xiw_B T-cell surface glycoprotein CD3 delta chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4
Probab=21.37 E-value=20 Score=23.43 Aligned_cols=27 Identities=15% Similarity=0.268 Sum_probs=19.2
Q ss_pred CCCcccccccccc--------cc--CCCCCccccccc
Q 032690 31 EDGYEWKKYGQKF--------IK--NIRKFRSYFKCQ 57 (135)
Q Consensus 31 ~DGy~WRKYGQK~--------ik--g~~~pRsYyrCt 57 (135)
..++.|-|-|... +. ...-||++|.|.
T Consensus 17 ~~~i~W~k~~~~i~~~~~~tL~L~~~~~d~sG~Y~C~ 53 (79)
T 1xiw_B 17 NTSITWVEGTVGTLLSDITRLDLGKRILDPRGIYRCN 53 (79)
T ss_dssp SSCEEEEEECCCEEEGGGTEEEEEEGGGCCEEEEEEC
T ss_pred CCCEEEEECCcccccccCCeEEeccCcCCCCeEEEec
Confidence 5679999988642 33 335599999993
No 6
>1odh_A MGCM1; transcription factor/DNA, transcription factor, DNA-binding domain, protein/DNA complex; 2.85A {Mus musculus} SCOP: d.239.1.1
Probab=18.09 E-value=94 Score=23.70 Aligned_cols=14 Identities=21% Similarity=0.373 Sum_probs=10.7
Q ss_pred EEEecCCCCCCCCC
Q 032690 79 IVYDGVHSHTHHGS 92 (135)
Q Consensus 79 vtY~G~H~h~~p~~ 92 (135)
..-+|.|+||.|.+
T Consensus 146 FqaKG~HDHpRPe~ 159 (174)
T 1odh_A 146 FQSKGEHDHPRPET 159 (174)
T ss_dssp EEEECCCCSCCCCC
T ss_pred EecccccCCCCCCC
Confidence 34469999999864
No 7
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4
Probab=14.34 E-value=47 Score=23.32 Aligned_cols=27 Identities=11% Similarity=0.290 Sum_probs=19.5
Q ss_pred CCCcccccccccc----------------ccCCCC---Cccccccc
Q 032690 31 EDGYEWKKYGQKF----------------IKNIRK---FRSYFKCQ 57 (135)
Q Consensus 31 ~DGy~WRKYGQK~----------------ikg~~~---pRsYyrCt 57 (135)
.+...|.|-|+.. +.++-. ||++|.|.
T Consensus 33 ~~~I~W~k~~~~i~~~~~~~~~~~~~~~L~L~~~~~~d~sG~Y~C~ 78 (105)
T 1xiw_A 33 GSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCY 78 (105)
T ss_dssp TSCEEEEETTEEESSSCSCTTEEEETTEEEETTCCHHHHCEEEEEE
T ss_pred CCceEEEeCCccccccccccccccCCCeEEeccccccCCCceEEEc
Confidence 3559999988653 445533 89999996
No 8
>1igq_A Transcriptional repressor protein KORB; SH3 domain, dimerization domain; 1.70A {Escherichia coli} SCOP: b.34.1.3 PDB: 1igu_A
Probab=11.78 E-value=63 Score=20.80 Aligned_cols=13 Identities=46% Similarity=1.094 Sum_probs=10.6
Q ss_pred CCCCCCccccccc
Q 032690 28 VLPEDGYEWKKYG 40 (135)
Q Consensus 28 ~~~~DGy~WRKYG 40 (135)
.++.+|+-|-||.
T Consensus 29 Rps~~G~~wiKyE 41 (62)
T 1igq_A 29 RPPAEGYAWLKYE 41 (62)
T ss_dssp CCSSTTEEEEEET
T ss_pred CCCcCceEEEEEe
Confidence 4567899999995
No 9
>1ter_A Tertiapin; toxin; NMR {Apis mellifera} SCOP: j.20.1.1
Probab=11.41 E-value=37 Score=18.04 Aligned_cols=11 Identities=45% Similarity=0.827 Sum_probs=7.6
Q ss_pred ccccccccccc
Q 032690 34 YEWKKYGQKFI 44 (135)
Q Consensus 34 y~WRKYGQK~i 44 (135)
..|+|.|.|..
T Consensus 13 mcwkkcgkk~~ 23 (26)
T 1ter_A 13 MCWKKCGKKXX 23 (26)
T ss_dssp HHHHHHHCC--
T ss_pred HHHHHhCcccc
Confidence 57999998864
No 10
>2l1s_A Uncharacterized protein YOHN; PFAM PF11776, DUF3315, JCSG, structural genomics, PSI-biolog protein structure initiative; NMR {Klebsiella pneumoniae subsp}
Probab=11.41 E-value=75 Score=21.19 Aligned_cols=23 Identities=22% Similarity=0.602 Sum_probs=17.6
Q ss_pred cccccCCCCCCcccccccccccc
Q 032690 23 RVHRLVLPEDGYEWKKYGQKFIK 45 (135)
Q Consensus 23 ~~~~~~~~~DGy~WRKYGQK~ik 45 (135)
....+..+..||+|-+.|..-++
T Consensus 41 ~~~~L~~PPrGy~Wvrv~~dyvL 63 (83)
T 2l1s_A 41 QQRNLPAPDAGSHWTYMGGNYVL 63 (83)
T ss_dssp TTSSCCCCCTTEEEEECSSEEEE
T ss_pred hHCCCCccCCCCEEEEECCcEEE
Confidence 34567889999999998876543
Done!