BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>032691
MAAITASVGTSSITRSVLVHKPSIVASSSPVLGLPAMAVKGKVRCSMEEKPSKQESKTNV
GMSASLLAAACAATMSSPAMALVDERMSTEGTGLPFGLSNNLLGWILLGVFGLIWALYIP
YASSLDEDEESGLSL

High Scoring Gene Products

Symbol, full name Information P value
PSBW
AT2G30570 		protein from Arabidopsis thaliana 4.6e-25

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  032691
        (135 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2064407 - symbol:PSBW "AT2G30570" species:3702...   285  4.6e-25   1


>TAIR|locus:2064407 [details] [associations]
            symbol:PSBW "AT2G30570" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0009507
            "chloroplast" evidence=ISM;IEA] [GO:0009523 "photosystem II"
            evidence=IEA] [GO:0015979 "photosynthesis" evidence=IEA;RCA]
            [GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
            [GO:0042549 "photosystem II stabilization" evidence=IMP]
            [GO:0006364 "rRNA processing" evidence=RCA] [GO:0009657 "plastid
            organization" evidence=RCA] [GO:0010207 "photosystem II assembly"
            evidence=RCA] InterPro:IPR009806 Pfam:PF07123 GO:GO:0016021
            EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0009535 GO:GO:0015979
            GO:GO:0009523 EMBL:U93215 UniGene:At.25082 GO:GO:0042549
            EMBL:X90769 EMBL:AF325042 EMBL:AF375448 EMBL:AY143958 EMBL:AY087402
            IPI:IPI00529146 PIR:A84710 PIR:S60662 RefSeq:NP_180615.1
            STRING:Q39194 EnsemblPlants:AT2G30570.1 GeneID:817606
            KEGG:ath:AT2G30570 TAIR:At2g30570 eggNOG:NOG328426
            HOGENOM:HOG000238324 InParanoid:Q39194 KO:K02721 OMA:MSNPAMA
            PhylomeDB:Q39194 ProtClustDB:PLN00092
            BioCyc:MetaCyc:AT2G30570-MONOMER Genevestigator:Q39194
            Uniprot:Q39194
        Length = 133

 Score = 285 (105.4 bits), Expect = 4.6e-25, P = 4.6e-25
 Identities = 66/123 (53%), Positives = 75/123 (60%)

Query:     1 MAAITASVGTSSITRSVLVHKPSIVASSSPVLGLPAMAVK-GKVRCSMEEKPSKQESKTN 59
             MA+ TAS  T S  R  L+ KP+ VA S+PVLGLP M  K G VRCSME   +KQ + + 
Sbjct:     1 MASFTASASTVSAARPALLLKPT-VAISAPVLGLPPMGKKKGGVRCSME---TKQGNVSV 56

Query:    60 VGXXXXXXXXXXXXXXXXX-XXXLVDERMSTEGTGLPFGLSNNLLGWILLGVFGLIWALY 118
             +G                     LVDERMSTEGTGLPFGLSNNLLGWIL GVFGLIW  +
Sbjct:    57 MGAGVSAAATAALTAVMSNPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWTFF 116

Query:   119 IPY 121
               Y
Sbjct:   117 FVY 119


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.132   0.381    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      135       102   0.00091  102 3  11 22  0.43    30
                                                     29  0.48    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  528 (56 KB)
  Total size of DFA:  101 KB (2070 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.87u 0.09s 9.96t   Elapsed:  00:00:01
  Total cpu time:  9.87u 0.09s 9.96t   Elapsed:  00:00:01
  Start:  Thu May  9 22:15:19 2013   End:  Thu May  9 22:15:20 2013

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