BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032691
(135 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224062236|ref|XP_002300801.1| hypothetical protein POPTRDRAFT_830089 [Populus trichocarpa]
gi|222842527|gb|EEE80074.1| hypothetical protein POPTRDRAFT_830089 [Populus trichocarpa]
Length = 134
Score = 196 bits (497), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 99/135 (73%), Positives = 112/135 (82%), Gaps = 1/135 (0%)
Query: 1 MAAITASVGTSSITRSVLVHKPSIVASSSPVLGLPAMAVKGKVRCSMEEKPSKQESKTNV 60
MA ITAS TSSI R+ L H+PS+ SSS VLGLPA+A KGKV CSME KP+ +E K+
Sbjct: 1 MATITASTATSSIVRAALAHRPSVGVSSSHVLGLPAIAKKGKVSCSMEGKPTVEEEKSK- 59
Query: 61 GMSASLLAAACAATMSSPAMALVDERMSTEGTGLPFGLSNNLLGWILLGVFGLIWALYIP 120
GMSASL+AA CAAT+SSPA+ALVDERMSTEGTGLPFGLSNNLL WILLGVF IW+LY
Sbjct: 60 GMSASLMAAVCAATISSPALALVDERMSTEGTGLPFGLSNNLLVWILLGVFAFIWSLYFV 119
Query: 121 YASSLDEDEESGLSL 135
Y SSLDEDE+SG+SL
Sbjct: 120 YTSSLDEDEDSGMSL 134
>gi|118489315|gb|ABK96462.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 133
Score = 191 bits (485), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 97/135 (71%), Positives = 110/135 (81%), Gaps = 2/135 (1%)
Query: 1 MAAITASVGTSSITRSVLVHKPSIVASSSPVLGLPAMAVKGKVRCSMEEKPSKQESKTNV 60
MA ITAS TSSI R+ L H+PS+ SSS VLGLPA+A KGKV CSME KP+ +E
Sbjct: 1 MATITASTATSSIVRAALAHRPSVGVSSSHVLGLPAIAKKGKVSCSMEGKPTVEEKSK-- 58
Query: 61 GMSASLLAAACAATMSSPAMALVDERMSTEGTGLPFGLSNNLLGWILLGVFGLIWALYIP 120
GMSASL+AA CAAT+SSPA+ALVDER+STEGTGLPFGLSNNLL WILLGVF IW+LY
Sbjct: 59 GMSASLMAAVCAATISSPALALVDERLSTEGTGLPFGLSNNLLVWILLGVFAFIWSLYFV 118
Query: 121 YASSLDEDEESGLSL 135
Y SSLDEDE+SG+SL
Sbjct: 119 YTSSLDEDEDSGMSL 133
>gi|351727755|ref|NP_001235636.1| uncharacterized protein LOC100306223 [Glycine max]
gi|255627917|gb|ACU14303.1| unknown [Glycine max]
Length = 132
Score = 182 bits (461), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 105/135 (77%), Positives = 114/135 (84%), Gaps = 3/135 (2%)
Query: 1 MAAITASVGTSSITRSVLVHKPSIVASSSPVLGLPAMAVKGKVRCSMEEKPSKQESKTNV 60
MA I A + T+SITR+ LV K + ASSS VLGLPAMA GKVRCSMEEKPS S +N+
Sbjct: 1 MATIIAGIPTTSITRAGLVLKRPVGASSSTVLGLPAMAKAGKVRCSMEEKPS---SSSNI 57
Query: 61 GMSASLLAAACAATMSSPAMALVDERMSTEGTGLPFGLSNNLLGWILLGVFGLIWALYIP 120
GM ASLLAAA AATMSSPAMALVDER+STEGTGLPFGLSNNLLGWIL GVFGLIWALY
Sbjct: 58 GMGASLLAAAVAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILFGVFGLIWALYFV 117
Query: 121 YASSLDEDEESGLSL 135
YAS+L+EDEESGLSL
Sbjct: 118 YASTLEEDEESGLSL 132
>gi|224085585|ref|XP_002307627.1| hypothetical protein POPTRDRAFT_715100 [Populus trichocarpa]
gi|118486017|gb|ABK94852.1| unknown [Populus trichocarpa]
gi|222857076|gb|EEE94623.1| hypothetical protein POPTRDRAFT_715100 [Populus trichocarpa]
Length = 134
Score = 182 bits (461), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 92/123 (74%), Positives = 103/123 (83%), Gaps = 2/123 (1%)
Query: 13 ITRSVLVHKPSIVASSSPVLGLPAMAVKGKVRCSMEEKPSKQESKTNVGMSASLLAAACA 72
+ R+ LVHKPS+ S SPVLGLPAMA KG+V CSME KPS +E GMSASL+AA CA
Sbjct: 14 LVRAALVHKPSLGVSCSPVLGLPAMAKKGRVSCSMEGKPSVEEKCK--GMSASLMAAVCA 71
Query: 73 ATMSSPAMALVDERMSTEGTGLPFGLSNNLLGWILLGVFGLIWALYIPYASSLDEDEESG 132
A+MSSPA+ALVDERMSTEGTGLPFGLSNNLL WILLGVF LIWALY Y ++L+EDEESG
Sbjct: 72 ASMSSPALALVDERMSTEGTGLPFGLSNNLLVWILLGVFALIWALYFTYTATLEEDEESG 131
Query: 133 LSL 135
LSL
Sbjct: 132 LSL 134
>gi|255559939|ref|XP_002520988.1| Photosystem II reaction center W protein, chloroplast precursor,
putative [Ricinus communis]
gi|223539825|gb|EEF41405.1| Photosystem II reaction center W protein, chloroplast precursor,
putative [Ricinus communis]
Length = 132
Score = 178 bits (452), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 92/136 (67%), Positives = 108/136 (79%), Gaps = 5/136 (3%)
Query: 1 MAAITASVGTSSITRSVLVHKPSIVASSSPVLGLPAMAVK-GKVRCSMEEKPSKQESKTN 59
MA I AS TSSITR+ VHK S ++S L LPAMA+K G VRC M+E Q+S++N
Sbjct: 1 MATIFASTPTSSITRANFVHKSSSGITTSRNLDLPAMAMKRGSVRCCMDE----QQSRSN 56
Query: 60 VGMSASLLAAACAATMSSPAMALVDERMSTEGTGLPFGLSNNLLGWILLGVFGLIWALYI 119
GMSASL+A+ C TMSSPA+ALVDER+STEGTGLPFGLSNNLLGWILLGVFGLIW+ Y
Sbjct: 57 KGMSASLIASICGVTMSSPALALVDERLSTEGTGLPFGLSNNLLGWILLGVFGLIWSFYT 116
Query: 120 PYASSLDEDEESGLSL 135
Y S+LD+DE+SGLSL
Sbjct: 117 VYTSTLDDDEDSGLSL 132
>gi|225437235|ref|XP_002282059.1| PREDICTED: photosystem II reaction center W protein, chloroplastic
[Vitis vinifera]
gi|297735504|emb|CBI17944.3| unnamed protein product [Vitis vinifera]
Length = 135
Score = 174 bits (441), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 95/135 (70%), Positives = 108/135 (80%)
Query: 1 MAAITASVGTSSITRSVLVHKPSIVASSSPVLGLPAMAVKGKVRCSMEEKPSKQESKTNV 60
MA+ITAS TSS+ R L V +SS +LGLP MA KG+V CSM+EKPS ++ +
Sbjct: 1 MASITASTPTSSLPRVGLRPNGGTVGTSSAILGLPVMAKKGRVTCSMKEKPSVEDGSLKM 60
Query: 61 GMSASLLAAACAATMSSPAMALVDERMSTEGTGLPFGLSNNLLGWILLGVFGLIWALYIP 120
GM ASL+AAACAATMSSPAMALVDERMSTEGTGLPFGLSNN LGWIL GVFGLIWALY
Sbjct: 61 GMGASLMAAACAATMSSPAMALVDERMSTEGTGLPFGLSNNTLGWILFGVFGLIWALYFV 120
Query: 121 YASSLDEDEESGLSL 135
Y ++L+EDEESGLSL
Sbjct: 121 YTATLEEDEESGLSL 135
>gi|388518217|gb|AFK47170.1| unknown [Lotus japonicus]
Length = 132
Score = 173 bits (439), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 94/136 (69%), Positives = 108/136 (79%), Gaps = 5/136 (3%)
Query: 1 MAAITASVGTSSITRSVLVHKPSIVASSSPVLGLPAMAVKGKVRC-SMEEKPSKQESKTN 59
M I + TSSIT + LV K + SSS V+GLPAMA G+VRC SME K ES++N
Sbjct: 1 MTTIMSGTPTSSITGTGLVQKQPLGVSSSTVMGLPAMAKVGRVRCCSMEGK----ESRSN 56
Query: 60 VGMSASLLAAACAATMSSPAMALVDERMSTEGTGLPFGLSNNLLGWILLGVFGLIWALYI 119
+GM ASL+AA AATMSSPA+ALVDER+STEGTGLPFGLSNNLLGWILLGVFGLIWA YI
Sbjct: 57 MGMGASLIAATLAATMSSPAIALVDERLSTEGTGLPFGLSNNLLGWILLGVFGLIWANYI 116
Query: 120 PYASSLDEDEESGLSL 135
Y S+LDED++SGLSL
Sbjct: 117 VYTSTLDEDDDSGLSL 132
>gi|217071582|gb|ACJ84151.1| unknown [Medicago truncatula]
Length = 136
Score = 172 bits (437), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 95/136 (69%), Positives = 108/136 (79%), Gaps = 1/136 (0%)
Query: 1 MAAITASVGTSSITRSVLVHKPSIVASSSPVLGLPAMAVKGKVRCSMEEKPSKQESKTNV 60
MA I A TSSI R+ VHK + SS V+GLP++A G+VRCS+E KP Q S +N+
Sbjct: 1 MATIIAGTSTSSIIRTSFVHKQPLGVSSHTVVGLPSIAKVGRVRCSIEGKPDVQGSSSNI 60
Query: 61 GMSASLLAAACAATMSSPA-MALVDERMSTEGTGLPFGLSNNLLGWILLGVFGLIWALYI 119
GM ASL+AA AAT+SSPA MALVDERMSTEGTGLPFGLSNNLLGW+L GVFGLIWALY
Sbjct: 61 GMGASLIAAISAATLSSPAAMALVDERMSTEGTGLPFGLSNNLLGWLLFGVFGLIWALYF 120
Query: 120 PYASSLDEDEESGLSL 135
YASSLDEDE+SGLSL
Sbjct: 121 IYASSLDEDEDSGLSL 136
>gi|388494682|gb|AFK35407.1| unknown [Medicago truncatula]
Length = 136
Score = 169 bits (428), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 94/136 (69%), Positives = 107/136 (78%), Gaps = 1/136 (0%)
Query: 1 MAAITASVGTSSITRSVLVHKPSIVASSSPVLGLPAMAVKGKVRCSMEEKPSKQESKTNV 60
MA I A TSSI R+ VHK + SS V+GLP++A G+V CS+E KP Q S +N+
Sbjct: 1 MATIIAGTSTSSIIRTSFVHKQPLGVSSHTVVGLPSIAKVGRVGCSIEGKPDVQGSSSNI 60
Query: 61 GMSASLLAAACAATMSSPA-MALVDERMSTEGTGLPFGLSNNLLGWILLGVFGLIWALYI 119
GM ASL+AA AAT+SSPA MALVDERMSTEGTGLPFGLSNNLLGW+L GVFGLIWALY
Sbjct: 61 GMGASLIAAISAATLSSPAAMALVDERMSTEGTGLPFGLSNNLLGWLLFGVFGLIWALYF 120
Query: 120 PYASSLDEDEESGLSL 135
YASSLDEDE+SGLSL
Sbjct: 121 IYASSLDEDEDSGLSL 136
>gi|388502126|gb|AFK39129.1| unknown [Lotus japonicus]
gi|388511197|gb|AFK43660.1| unknown [Lotus japonicus]
Length = 136
Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 100/136 (73%), Positives = 112/136 (82%), Gaps = 1/136 (0%)
Query: 1 MAAITASVGTSSITRSVLVHKPSIVASSSPVLGLPAMAVKGKVRCSMEEKPSKQESKTNV 60
MA I+A++ T SITR+ LV K +V SSSPVLGLPA+A G+VRCSME KPS QES + +
Sbjct: 1 MATISATITTPSITRAGLVQKRPLVISSSPVLGLPALAKVGRVRCSMEGKPSGQESSSKM 60
Query: 61 GMSASLLAAACAATMSSPAMA-LVDERMSTEGTGLPFGLSNNLLGWILLGVFGLIWALYI 119
GM ASL+AAA AA MSSPA LVDER+STEGTGLPFGLSNNLLGWIL GVFGLIWA+Y
Sbjct: 61 GMGASLMAAASAAAMSSPAAMALVDERLSTEGTGLPFGLSNNLLGWILFGVFGLIWAVYF 120
Query: 120 PYASSLDEDEESGLSL 135
YAS LDEDEESGLSL
Sbjct: 121 VYASGLDEDEESGLSL 136
>gi|2493694|sp|Q41387.1|PSBW_SPIOL RecName: Full=Photosystem II reaction center W protein,
chloroplastic; AltName: Full=PSII 6.1 kDa protein;
Flags: Precursor
gi|728716|emb|CAA59409.1| protein of photosystem II [Spinacia oleracea]
Length = 137
Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 96/137 (70%), Positives = 107/137 (78%), Gaps = 2/137 (1%)
Query: 1 MAAITASVGTSSITRSVLVHKPSIVASSSPVLGLPAMAVKGKVRCSMEEKPSKQESKT-- 58
MA ITAS S + R+ LVH + SSSP+LGLP+M + KV CS+E KPS E+ T
Sbjct: 1 MATITASSSASLVARASLVHNSRVGVSSSPILGLPSMTKRSKVTCSIENKPSTTETTTTT 60
Query: 59 NVGMSASLLAAACAATMSSPAMALVDERMSTEGTGLPFGLSNNLLGWILLGVFGLIWALY 118
N M ASLLAAA AAT+S+PAMALVDERMSTEGTGLPFGLSNNLLGWIL GVFGLIWALY
Sbjct: 61 NKSMGASLLAAAAAATISNPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWALY 120
Query: 119 IPYASSLDEDEESGLSL 135
YAS L+EDEESGLSL
Sbjct: 121 FVYASGLEEDEESGLSL 137
>gi|351721030|ref|NP_001236684.1| uncharacterized protein LOC100305788 [Glycine max]
gi|255626603|gb|ACU13646.1| unknown [Glycine max]
Length = 136
Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 97/137 (70%), Positives = 110/137 (80%), Gaps = 3/137 (2%)
Query: 1 MAAITASVGTSSITRSVLVHKPSIVASSSPVLGLPAMAVKGKVRCSMEEKPSKQESKTN- 59
MA I+A++ T SITR+ LV K S+ SSPVLGLPAM G+V CSMEEKPS + ++
Sbjct: 1 MATISAAITTPSITRACLVQKRSL-GFSSPVLGLPAMGKVGRVSCSMEEKPSSVKESSSS 59
Query: 60 -VGMSASLLAAACAATMSSPAMALVDERMSTEGTGLPFGLSNNLLGWILLGVFGLIWALY 118
+GM ASL+AAA AA MS PAMALVDER+STEGTGLPFGLSNNLLGWIL GVFGLIWALY
Sbjct: 60 MLGMGASLMAAASAAAMSGPAMALVDERLSTEGTGLPFGLSNNLLGWILFGVFGLIWALY 119
Query: 119 IPYASSLDEDEESGLSL 135
Y SSL+EDEESGLSL
Sbjct: 120 FVYTSSLEEDEESGLSL 136
>gi|351726036|ref|NP_001236601.1| uncharacterized protein LOC100526966 [Glycine max]
gi|255631268|gb|ACU16001.1| unknown [Glycine max]
Length = 133
Score = 156 bits (395), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 101/136 (74%), Positives = 111/136 (81%), Gaps = 4/136 (2%)
Query: 1 MAAITASVGTSSITRSVLVHKPSIVASSSPVLGLPAMAVKGKVRCSMEEKPSKQESKTNV 60
MA I A T+SITR+ V K + ASSS VLGLPAMA G+VRCSMEEKPS S +N+
Sbjct: 1 MATIIAGTPTTSITRTGHVLKRPVGASSSTVLGLPAMAKAGRVRCSMEEKPS---SSSNL 57
Query: 61 GMSASLLAAACAATMSSPA-MALVDERMSTEGTGLPFGLSNNLLGWILLGVFGLIWALYI 119
GM ASLLAAA AATMSSPA MALVDER+STEGTGLPFGLSNNLLGWIL GVFGLIWAL+
Sbjct: 58 GMGASLLAAAAAATMSSPAAMALVDERLSTEGTGLPFGLSNNLLGWILFGVFGLIWALFF 117
Query: 120 PYASSLDEDEESGLSL 135
Y S+L+EDEESGLSL
Sbjct: 118 VYTSTLEEDEESGLSL 133
>gi|351727821|ref|NP_001236406.1| uncharacterized protein LOC100499815 [Glycine max]
gi|255626853|gb|ACU13771.1| unknown [Glycine max]
Length = 133
Score = 155 bits (391), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 93/137 (67%), Positives = 105/137 (76%), Gaps = 6/137 (4%)
Query: 1 MAAITASVGTSSITRSVLVHKPSIVASSSPVLGLPAMAVKGKVRCSMEEKPS--KQESKT 58
MA I A++ T SI+R+ LV K SSPVLGLPAM G+V CSMEEKP K+ S +
Sbjct: 1 MATIPAAITTPSISRATLVQK----RVSSPVLGLPAMGKVGRVSCSMEEKPYSVKESSSS 56
Query: 59 NVGMSASLLAAACAATMSSPAMALVDERMSTEGTGLPFGLSNNLLGWILLGVFGLIWALY 118
+GM ASL+AAA AA MS PAMALVDER+STEGTGLPFGLSNNLLGWIL GVFGLIW LY
Sbjct: 57 MLGMGASLMAAASAAAMSGPAMALVDERLSTEGTGLPFGLSNNLLGWILFGVFGLIWTLY 116
Query: 119 IPYASSLDEDEESGLSL 135
Y S+L+E EESGLSL
Sbjct: 117 FVYTSTLEEGEESGLSL 133
>gi|119720746|gb|ABL97943.1| component of 6.1 kDa polypeptide of photosystem II reaction center
[Brassica rapa]
Length = 133
Score = 152 bits (385), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 87/136 (63%), Positives = 97/136 (71%), Gaps = 4/136 (2%)
Query: 1 MAAITASVGTSSITRSVLVHKPSIVASSSPVLGLPAMA-VKGKVRCSMEEKPSKQESKTN 59
MA+ TAS T S+ R L+ KP+ VA S+PVLGLP M KG VRCSME P +
Sbjct: 1 MASFTASASTVSVARPALLLKPT-VAVSAPVLGLPPMGKRKGGVRCSME--PKQGNVSAV 57
Query: 60 VGMSASLLAAACAATMSSPAMALVDERMSTEGTGLPFGLSNNLLGWILLGVFGLIWALYI 119
++ AA A MS+PAMALVD+RMSTEGTGLPFGLSNNLLGWILLGVFGLIW Y
Sbjct: 58 GAGVSAAATAALTAVMSNPAMALVDDRMSTEGTGLPFGLSNNLLGWILLGVFGLIWTFYF 117
Query: 120 PYASSLDEDEESGLSL 135
Y SSLDEDEESGLSL
Sbjct: 118 TYTSSLDEDEESGLSL 133
>gi|449458436|ref|XP_004146953.1| PREDICTED: photosystem II reaction center W protein,
chloroplastic-like [Cucumis sativus]
gi|449517209|ref|XP_004165638.1| PREDICTED: photosystem II reaction center W protein,
chloroplastic-like isoform 2 [Cucumis sativus]
Length = 137
Score = 152 bits (383), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 89/126 (70%), Positives = 104/126 (82%), Gaps = 6/126 (4%)
Query: 15 RSVLVHKPSIVASSSP---VLGLPAMAVKGKVRCSMEEKPSKQ-ESKT-NVGMSASLLAA 69
R+ LV ++ S+SP +LGLPA+ KG VRCSME K + + E+K+ N+GM ASL+AA
Sbjct: 13 RTSLVQN-RLLPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAA 71
Query: 70 ACAATMSSPAMALVDERMSTEGTGLPFGLSNNLLGWILLGVFGLIWALYIPYASSLDEDE 129
ACAATMSSPAMALVDER+STEGTGLPFGLSNNLLGWILLGVF LIWA YI Y S+L+EDE
Sbjct: 72 ACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFALIWAFYIVYTSTLEEDE 131
Query: 130 ESGLSL 135
ESGLSL
Sbjct: 132 ESGLSL 137
>gi|388494252|gb|AFK35192.1| unknown [Medicago truncatula]
Length = 137
Score = 149 bits (376), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 89/123 (72%), Positives = 97/123 (78%), Gaps = 2/123 (1%)
Query: 15 RSVLVHKPSIVASSSPVLGLPAMAVKGKVRCSMEEKPSK-QESKTNVGMSASLLAAACAA 73
R+ L K + SSSPVLGLP MA G+VRCSME KPS ES +N+GM +SL AAACAA
Sbjct: 15 RACLAQKRPLSVSSSPVLGLPTMAKVGRVRCSMEGKPSSVSESNSNIGMGSSLFAAACAA 74
Query: 74 TMSSPAMA-LVDERMSTEGTGLPFGLSNNLLGWILLGVFGLIWALYIPYASSLDEDEESG 132
MSSPA LVDERMSTEGTGLPFGLSNNLLGW+L GVFG IWALY YAS L+EDEESG
Sbjct: 75 AMSSPAAMALVDERMSTEGTGLPFGLSNNLLGWLLFGVFGFIWALYFIYASGLEEDEESG 134
Query: 133 LSL 135
LSL
Sbjct: 135 LSL 137
>gi|950023|emb|CAA62296.1| component of 6.1 kDa polypeptide of photosystem II reaction center
[Arabidopsis thaliana]
Length = 133
Score = 149 bits (375), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 87/137 (63%), Positives = 98/137 (71%), Gaps = 6/137 (4%)
Query: 1 MAAITASVGTSSITRSVLVHKPSIVASSSPVLGLPAMAVK-GKVRCSMEEKPSKQESKTN 59
MA+ TAS T S R L+ KP+ VA S+PVLGLP M K G VRCSME +KQ + +
Sbjct: 1 MASFTASASTVSAARPALLLKPT-VAISAPVLGLPPMGKKKGGVRCSME---TKQGNVSV 56
Query: 60 VGMSASLLAAACAA-TMSSPAMALVDERMSTEGTGLPFGLSNNLLGWILLGVFGLIWALY 118
+G S A A MS+PAMALVDERMSTEGTGLPFGLSNNLLGWIL GVFGLIW +
Sbjct: 57 MGAGVSAAATAALTAVMSNPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWTFF 116
Query: 119 IPYASSLDEDEESGLSL 135
Y SSL+EDEESGLSL
Sbjct: 117 FAYTSSLEEDEESGLSL 133
>gi|15224531|ref|NP_180615.1| photosystem II reaction center W protein [Arabidopsis thaliana]
gi|122064936|sp|Q39194.2|PSBW_ARATH RecName: Full=Photosystem II reaction center W protein,
chloroplastic; AltName: Full=PSII 6.1 kDa protein;
Flags: Precursor
gi|11762232|gb|AAG40394.1|AF325042_1 At2g30570 [Arabidopsis thaliana]
gi|14030715|gb|AAK53032.1|AF375448_1 At2g30570/T6B20.8 [Arabidopsis thaliana]
gi|1946362|gb|AAB63080.1| photosystem II reaction center 6.1KD protein [Arabidopsis thaliana]
gi|21593002|gb|AAM64951.1| photosystem II reaction center 6.1KD protein [Arabidopsis thaliana]
gi|23506075|gb|AAN28897.1| At2g30570/T6B20.8 [Arabidopsis thaliana]
gi|330253315|gb|AEC08409.1| photosystem II reaction center W protein [Arabidopsis thaliana]
Length = 133
Score = 148 bits (374), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 87/137 (63%), Positives = 98/137 (71%), Gaps = 6/137 (4%)
Query: 1 MAAITASVGTSSITRSVLVHKPSIVASSSPVLGLPAMAVK-GKVRCSMEEKPSKQESKTN 59
MA+ TAS T S R L+ KP+ VA S+PVLGLP M K G VRCSME +KQ + +
Sbjct: 1 MASFTASASTVSAARPALLLKPT-VAISAPVLGLPPMGKKKGGVRCSME---TKQGNVSV 56
Query: 60 VGMSASLLAAACAA-TMSSPAMALVDERMSTEGTGLPFGLSNNLLGWILLGVFGLIWALY 118
+G S A A MS+PAMALVDERMSTEGTGLPFGLSNNLLGWIL GVFGLIW +
Sbjct: 57 MGAGVSAAATAALTAVMSNPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWTFF 116
Query: 119 IPYASSLDEDEESGLSL 135
Y SSL+EDEESGLSL
Sbjct: 117 FVYTSSLEEDEESGLSL 133
>gi|449517207|ref|XP_004165637.1| PREDICTED: photosystem II reaction center W protein,
chloroplastic-like isoform 1 [Cucumis sativus]
Length = 145
Score = 148 bits (373), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 82/106 (77%), Positives = 93/106 (87%), Gaps = 2/106 (1%)
Query: 32 LGLPAMAVKGKVRCSMEEKPSKQ-ESKT-NVGMSASLLAAACAATMSSPAMALVDERMST 89
+GLPA+ KG VRCSME K + + E+K+ N+GM ASL+AAACAATMSSPAMALVDER+ST
Sbjct: 40 IGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLST 99
Query: 90 EGTGLPFGLSNNLLGWILLGVFGLIWALYIPYASSLDEDEESGLSL 135
EGTGLPFGLSNNLLGWILLGVF LIWA YI Y S+L+EDEESGLSL
Sbjct: 100 EGTGLPFGLSNNLLGWILLGVFALIWAFYIVYTSTLEEDEESGLSL 145
>gi|297826473|ref|XP_002881119.1| hypothetical protein ARALYDRAFT_902045 [Arabidopsis lyrata subsp.
lyrata]
gi|297326958|gb|EFH57378.1| hypothetical protein ARALYDRAFT_902045 [Arabidopsis lyrata subsp.
lyrata]
Length = 133
Score = 148 bits (373), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 86/137 (62%), Positives = 98/137 (71%), Gaps = 6/137 (4%)
Query: 1 MAAITASVGTSSITRSVLVHKPSIVASSSPVLGLPAMAVK-GKVRCSMEEKPSKQESKTN 59
MA+ TAS T S R ++ KP+ VA S+PVLGLP M K G VRCSME +KQ + +
Sbjct: 1 MASFTASASTVSAARPAILLKPT-VAVSAPVLGLPPMGKKKGGVRCSME---TKQGNVSA 56
Query: 60 VGMSASLLAAACAA-TMSSPAMALVDERMSTEGTGLPFGLSNNLLGWILLGVFGLIWALY 118
+G S A A MS+PAMALVDERMSTEGTGLPFGLSNNLLGWIL GVFGLIW +
Sbjct: 57 MGAGVSAAATAALTAVMSNPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWTFF 116
Query: 119 IPYASSLDEDEESGLSL 135
Y SSL+EDEESGLSL
Sbjct: 117 FVYTSSLEEDEESGLSL 133
>gi|16930765|gb|AAL32042.1|AF439283_1 photosystem II reaction center [Retama raetam]
Length = 96
Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 78/96 (81%), Positives = 85/96 (88%), Gaps = 1/96 (1%)
Query: 41 GKVRCSMEEKPSKQESKTNVGMSASLLAAACAA-TMSSPAMALVDERMSTEGTGLPFGLS 99
G+VRCSMEEKPS QES ++G+ ASL+AAACAA TMSSPAMALVDER+STEGTGLPFGLS
Sbjct: 1 GRVRCSMEEKPSVQESSPSMGVGASLMAAACAAATMSSPAMALVDERLSTEGTGLPFGLS 60
Query: 100 NNLLGWILLGVFGLIWALYIPYASSLDEDEESGLSL 135
NNLLGWIL VFGLIW Y YASSL+EDEESGLSL
Sbjct: 61 NNLLGWILFVVFGLIWTFYFIYASSLEEDEESGLSL 96
>gi|225453018|ref|XP_002264508.1| PREDICTED: photosystem II reaction center W protein, chloroplastic
[Vitis vinifera]
gi|296087925|emb|CBI35208.3| unnamed protein product [Vitis vinifera]
Length = 135
Score = 141 bits (355), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 85/136 (62%), Positives = 102/136 (75%), Gaps = 2/136 (1%)
Query: 1 MAAITASVGTSSITRSVLVHKPSIVASSSPVLGLPAMAVKGKVRCSMEEKPSKQESKTNV 60
MA ITAS +S+ R+ + K + SSPVLGLPAMA KG+VRC EEKP + +++
Sbjct: 1 MATITASNPATSLVRASVASK-GLNGISSPVLGLPAMAKKGRVRCMSEEKPCGSDMGSSI 59
Query: 61 GMSASLLAAACAATMSSPA-MALVDERMSTEGTGLPFGLSNNLLGWILLGVFGLIWALYI 119
M ASL+AAA A S+ MALVDER+STEGTGLPFGLSNNLLGWIL GVFGLIWALY
Sbjct: 60 SMGASLMAAAAAVAASAGPAMALVDERLSTEGTGLPFGLSNNLLGWILFGVFGLIWALYF 119
Query: 120 PYASSLDEDEESGLSL 135
Y ++L+ED+ESGLSL
Sbjct: 120 TYTATLEEDDESGLSL 135
>gi|255580931|ref|XP_002531284.1| Photosystem II reaction center W protein, chloroplast precursor,
putative [Ricinus communis]
gi|223529117|gb|EEF31097.1| Photosystem II reaction center W protein, chloroplast precursor,
putative [Ricinus communis]
Length = 134
Score = 134 bits (338), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 81/137 (59%), Positives = 101/137 (73%), Gaps = 5/137 (3%)
Query: 1 MAAITASVGTSSITRSVLVHKPSIVASSSPVLGLPAMAVKG-KVRCSMEEKPSKQESKTN 59
MAA+T S T+ + + +K I A+ P+LGLP MA +G +VRCS+EEK ++ N
Sbjct: 1 MAAMTTSKLTTLLPPATF-NKTRIQAT--PILGLPVMATRGCRVRCSIEEKAEAKDKSLN 57
Query: 60 VGMSASLLAAACAATMSS-PAMALVDERMSTEGTGLPFGLSNNLLGWILLGVFGLIWALY 118
M AS++AAA A ++ PAMALVDERMSTEGTGLPFGLSNNLLGWILLGVF LIW+LY
Sbjct: 58 TSMVASMVAAASAVAATAGPAMALVDERMSTEGTGLPFGLSNNLLGWILLGVFALIWSLY 117
Query: 119 IPYASSLDEDEESGLSL 135
Y S+LDED++S LSL
Sbjct: 118 TVYTSTLDEDDDSALSL 134
>gi|16226722|gb|AAL16242.1|AF428312_1 At2g30570/T6B20.8 [Arabidopsis thaliana]
Length = 112
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/116 (62%), Positives = 82/116 (70%), Gaps = 6/116 (5%)
Query: 1 MAAITASVGTSSITRSVLVHKPSIVASSSPVLGLPAMAVK-GKVRCSMEEKPSKQESKTN 59
MA+ TAS T S R L+ KP+ VA S+PVLGLP M K G VRCSME +KQ + +
Sbjct: 1 MASFTASASTVSAARPALLLKPT-VAISAPVLGLPPMGKKKGGVRCSME---TKQGNVSV 56
Query: 60 VGMSASLLAAACAA-TMSSPAMALVDERMSTEGTGLPFGLSNNLLGWILLGVFGLI 114
+G S A A MS+PAMALVDERMSTEGTGLPFGLSNNLLGWIL GVFGLI
Sbjct: 57 MGAGVSAAATAALTAVMSNPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLI 112
>gi|339716066|gb|AEJ88280.1| putative chloroplast photosystem II reaction center W-like protein
[Wolffia australiana]
gi|374096161|gb|AEY84993.1| photosystem II reaction center W protein (chloroplast) [Wolffia
australiana]
Length = 132
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 73/122 (59%), Positives = 85/122 (69%), Gaps = 6/122 (4%)
Query: 16 SVLVHKPSIVA--SSSPVLGLPAMAVKGKVRCSMEEKPSKQESKTNVGMSASLLAAACAA 73
S LV +PS A SS P+LGLP +G R +M+ K S + V ASLLAAA
Sbjct: 15 SFLVARPSAGAGASSLPLLGLPR---RGGAR-AMQVKCSAAAEEKKVPAVASLLAAASVM 70
Query: 74 TMSSPAMALVDERMSTEGTGLPFGLSNNLLGWILLGVFGLIWALYIPYASSLDEDEESGL 133
S+PA+ALVDER+STEGTGL G+SNNLL WIL GVFGLIWALY Y S+L+EDEESGL
Sbjct: 71 ATSNPALALVDERLSTEGTGLSLGISNNLLAWILAGVFGLIWALYFVYTSTLEEDEESGL 130
Query: 134 SL 135
SL
Sbjct: 131 SL 132
>gi|449442939|ref|XP_004139238.1| PREDICTED: photosystem II reaction center W protein,
chloroplastic-like [Cucumis sativus]
gi|449483001|ref|XP_004156466.1| PREDICTED: photosystem II reaction center W protein,
chloroplastic-like [Cucumis sativus]
Length = 134
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 66/115 (57%), Positives = 79/115 (68%), Gaps = 4/115 (3%)
Query: 22 PSIVASSSPVLGLPAMAVKGKVRCSMEEKPS-KQESKTNVGMSASLLAAACAATMSSPAM 80
P++ A P L KG ++CS+EEKP K+ S+ ++ A A + PA+
Sbjct: 23 PTMAAHRLPTL---QKMKKGGIKCSVEEKPEGKKLSEESMVPGTVGAVAMAALAAAGPAV 79
Query: 81 ALVDERMSTEGTGLPFGLSNNLLGWILLGVFGLIWALYIPYASSLDEDEESGLSL 135
ALVDER+STEGTGLPFGLSNNLLGWIL VF LIWALY YASSLDEDE+SGLSL
Sbjct: 80 ALVDERLSTEGTGLPFGLSNNLLGWILAVVFALIWALYFVYASSLDEDEDSGLSL 134
>gi|226508870|ref|NP_001150205.1| LOC100283835 [Zea mays]
gi|195637556|gb|ACG38246.1| photosystem II reaction center W protein [Zea mays]
Length = 127
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/114 (59%), Positives = 82/114 (71%), Gaps = 4/114 (3%)
Query: 25 VASSSPVLGLPAMAVKG-KVRC--SMEEKPSKQESKTNVGMSASLLAAACAATMSSPAMA 81
VA GLP + V+ K RC + +PS++ N G S+SLLA A +A +SP +A
Sbjct: 15 VARPCQAQGLPQLRVRAEKARCGAAHSRRPSQRRDGNN-GASSSLLAVATSAVTTSPXLA 73
Query: 82 LVDERMSTEGTGLPFGLSNNLLGWILLGVFGLIWALYIPYASSLDEDEESGLSL 135
LVDERMSTEGTGL GLSNNLLGWILLGVFGLIW+LY Y S+LDED++SGLSL
Sbjct: 74 LVDERMSTEGTGLSLGLSNNLLGWILLGVFGLIWSLYTVYTSTLDEDDDSGLSL 127
>gi|147802575|emb|CAN68593.1| hypothetical protein VITISV_016961 [Vitis vinifera]
Length = 70
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 47/56 (83%), Positives = 52/56 (92%)
Query: 80 MALVDERMSTEGTGLPFGLSNNLLGWILLGVFGLIWALYIPYASSLDEDEESGLSL 135
MALVDER+STEGTGLPFGLSNNLLGWIL GVFGLIWALY Y ++L+ED+ESGLSL
Sbjct: 15 MALVDERLSTEGTGLPFGLSNNLLGWILFGVFGLIWALYFTYTATLEEDDESGLSL 70
>gi|284444057|gb|ADB85767.1| chloroplast photosystem II reaction center W-like protein [Wolffia
arrhiza]
Length = 127
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 49/60 (81%), Positives = 53/60 (88%)
Query: 76 SSPAMALVDERMSTEGTGLPFGLSNNLLGWILLGVFGLIWALYIPYASSLDEDEESGLSL 135
SSPA+ALVDER+STEGTGL G+SNNLL WIL GVFGLIWALY Y S+LDEDEESGLSL
Sbjct: 68 SSPALALVDERLSTEGTGLSLGISNNLLIWILAGVFGLIWALYFVYTSTLDEDEESGLSL 127
>gi|338173935|gb|AEI83508.1| chloroplast photosystem II reaction center W-like protein [Wolffia
arrhiza]
Length = 127
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/60 (80%), Positives = 52/60 (86%)
Query: 76 SSPAMALVDERMSTEGTGLPFGLSNNLLGWILLGVFGLIWALYIPYASSLDEDEESGLSL 135
SSP +ALVDER+STEGTGL G+SNNLL WIL GVFGLIWALY Y S+LDEDEESGLSL
Sbjct: 68 SSPGLALVDERLSTEGTGLSLGISNNLLIWILAGVFGLIWALYFVYTSTLDEDEESGLSL 127
>gi|168024611|ref|XP_001764829.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683865|gb|EDQ70271.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 142
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 56/133 (42%), Positives = 82/133 (61%), Gaps = 12/133 (9%)
Query: 4 ITASVGTSSITRSVLVHKPSIVASSSPVLGLPAMAVKGKVRCSMEEKPSKQESKTNVGMS 63
+ S+GTSS R A++ PV G+P +A+ ++ CS+E+K S + +
Sbjct: 21 VQKSLGTSSSHR----------AAARPVAGVPVLAMP-RIVCSLEKKESNKGDVNGLPQL 69
Query: 64 ASLLAAACAATMSSPAMALVDERMSTEGTGLPFGLSNNLLGWILLGVFGLIWALYIPYAS 123
A+ + +A + P ALVDER+STEGTGL G+SN L WIL+GV L+WA+Y Y+S
Sbjct: 70 AAAVTSAATMAYAHPVFALVDERLSTEGTGLGLGVSNPKLTWILVGVTALVWAVYFTYSS 129
Query: 124 SLDE-DEESGLSL 135
+L E D++SGLSL
Sbjct: 130 TLPEGDDDSGLSL 142
>gi|116779504|gb|ABK21312.1| unknown [Picea sitchensis]
gi|116779706|gb|ABK21398.1| unknown [Picea sitchensis]
gi|116790469|gb|ABK25626.1| unknown [Picea sitchensis]
gi|116791712|gb|ABK26081.1| unknown [Picea sitchensis]
gi|116791741|gb|ABK26091.1| unknown [Picea sitchensis]
gi|148907724|gb|ABR16989.1| unknown [Picea sitchensis]
gi|224285778|gb|ACN40604.1| unknown [Picea sitchensis]
Length = 146
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 66/146 (45%), Positives = 89/146 (60%), Gaps = 11/146 (7%)
Query: 1 MAAITASVGTSSITRSVLVHKPSIVASSSP----VLGLPAMAVKGKVRCSMEE------K 50
MAA T+S++ +L A+S P V+GLPA+ + V + ++ K
Sbjct: 1 MAATAVFSTTTSVSAFLLNRSLGSAAASRPSSLSVVGLPALDKRCTVCYAQKQEEIVRAK 60
Query: 51 PSKQESKTNVGMSASLLAAACAATMSSP-AMALVDERMSTEGTGLPFGLSNNLLGWILLG 109
+ Q ++G +A L+A A A T+S+ A ALVDER+STEGTGL GLSN LLGWIL+G
Sbjct: 61 ENSQNCMVSLGGAAPLMAVAAALTVSTKEAFALVDERLSTEGTGLGLGLSNPLLGWILVG 120
Query: 110 VFGLIWALYIPYASSLDEDEESGLSL 135
VF LIW LY S++ EDE+SGLSL
Sbjct: 121 VFTLIWILYFTTYSNVKEDEDSGLSL 146
>gi|116779796|gb|ABK21433.1| unknown [Picea sitchensis]
gi|116791862|gb|ABK26137.1| unknown [Picea sitchensis]
gi|116791959|gb|ABK26178.1| unknown [Picea sitchensis]
gi|148906058|gb|ABR16188.1| unknown [Picea sitchensis]
gi|148907944|gb|ABR17092.1| unknown [Picea sitchensis]
gi|224284792|gb|ACN40126.1| unknown [Picea sitchensis]
gi|224285006|gb|ACN40232.1| unknown [Picea sitchensis]
Length = 146
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/146 (45%), Positives = 88/146 (60%), Gaps = 11/146 (7%)
Query: 1 MAAITASVGTSSITRSVLVHKPSIVASSSP----VLGLPAMAVKGKVRCSMEE------K 50
MAA T+S++ +L A+S P V+GLPA+ + V + ++ K
Sbjct: 1 MAATAVFSTTTSVSAFLLNRSLGSAAASRPSSLSVVGLPALDKRCTVCYAQKQEEIVRAK 60
Query: 51 PSKQESKTNVGMSASLLAAACAATMSSP-AMALVDERMSTEGTGLPFGLSNNLLGWILLG 109
+ Q ++G +A L+A A A T+S+ A ALVDER+STEGTGL GLSN LLGWIL+G
Sbjct: 61 ENSQNCMVSLGGAAPLMAVAAALTVSTKEAFALVDERLSTEGTGLGLGLSNPLLGWILVG 120
Query: 110 VFGLIWALYIPYASSLDEDEESGLSL 135
VF LIW LY S + EDE+SGLSL
Sbjct: 121 VFTLIWILYFTTYSGVKEDEDSGLSL 146
>gi|224284834|gb|ACN40147.1| unknown [Picea sitchensis]
gi|224285390|gb|ACN40418.1| unknown [Picea sitchensis]
Length = 149
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 65/149 (43%), Positives = 88/149 (59%), Gaps = 14/149 (9%)
Query: 1 MAAITASVGTSSITRSVLVHKPSIVASSSP-------VLGLPAMAVKGKVRCSMEE---- 49
MAA T+S++ +L A+S P + GLPA+ + V + ++
Sbjct: 1 MAATAVFSTTTSVSAFLLNRSLGSAAASRPSSLSVVGMTGLPALDKRCTVCYAQKQEEIV 60
Query: 50 --KPSKQESKTNVGMSASLLAAACAATMSSP-AMALVDERMSTEGTGLPFGLSNNLLGWI 106
K + Q ++G +A L+A A A T+S+ A ALVDER+STEGTGL GLSN LLGWI
Sbjct: 61 RAKENSQNCMVSLGGAAPLMAVAAALTVSTKEAFALVDERLSTEGTGLGLGLSNPLLGWI 120
Query: 107 LLGVFGLIWALYIPYASSLDEDEESGLSL 135
L+GVF LIW LY S++ EDE+SGLSL
Sbjct: 121 LVGVFTLIWILYFTTYSNVKEDEDSGLSL 149
>gi|195608510|gb|ACG26085.1| photosystem II reaction center W protein [Zea mays]
Length = 130
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 67/134 (50%), Positives = 87/134 (64%), Gaps = 10/134 (7%)
Query: 1 MAAITASVGTSSITRSVLVHKPSIVASSSPVLGLPAMAVKG-KVRCSM-EEKPSKQESKT 58
MA ++A+V T+ + R+ + +P+ LGLPA+ + +VRCS ++ + T
Sbjct: 1 MATVSAAVVTTIVARAA-IARPN-------ALGLPALRARSERVRCSYAKDAKNAAPVST 52
Query: 59 NVGMSASLLAAACAATMSSPAMALVDERMSTEGTGLPFGLSNNLLGWILLGVFGLIWALY 118
++ L AA + PA+ALVDERMSTEGTGL GLSNNLLGWILLGVFGLIW+LY
Sbjct: 53 KGAGASLLAAAGAVTASAGPALALVDERMSTEGTGLSLGLSNNLLGWILLGVFGLIWSLY 112
Query: 119 IPYASSLDEDEESG 132
Y S LDEDEESG
Sbjct: 113 TIYTSDLDEDEESG 126
>gi|194703386|gb|ACF85777.1| unknown [Zea mays]
gi|194708378|gb|ACF88273.1| unknown [Zea mays]
gi|195617568|gb|ACG30614.1| photosystem II reaction center W protein [Zea mays]
gi|414880272|tpg|DAA57403.1| TPA: hypothetical protein ZEAMMB73_527010 [Zea mays]
Length = 127
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 66/133 (49%), Positives = 85/133 (63%), Gaps = 11/133 (8%)
Query: 1 MAAITASVGTSSITRSVLVHKPSIVASSSPVLGLPAMAVKG-KVRCSMEEKPSKQESKTN 59
MA ++A+V T+ + R+ + +P+ LGLPA+ + +VRCS + + +K
Sbjct: 1 MATVSAAVVTTIVARAA-IARPN-------ALGLPALRARSERVRCSYAKDAAPVSTKGA 52
Query: 60 VGMSASLLAAACAATMSSPAMALVDERMSTEGTGLPFGLSNNLLGWILLGVFGLIWALYI 119
+ AA + PA+ALVDERMSTEGTGL GLSNNLLGWILLGVFGLIW+LY
Sbjct: 53 GASLLA--AAGAVTASAGPALALVDERMSTEGTGLSLGLSNNLLGWILLGVFGLIWSLYT 110
Query: 120 PYASSLDEDEESG 132
Y S LDEDEESG
Sbjct: 111 IYTSDLDEDEESG 123
>gi|195619234|gb|ACG31447.1| photosystem II reaction center W protein [Zea mays]
Length = 131
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/133 (49%), Positives = 89/133 (66%), Gaps = 7/133 (5%)
Query: 1 MAAITASVGTSSITRSVLVHKPSIVASSSPVLGLPAMAVKG-KVRCSMEEKPSKQESKTN 59
MA ++A+V T+ + R+ + +P+ + + + GLPA+ + +VRCS + + +K
Sbjct: 1 MATVSAAVVTTIVARAA-IARPNALGTYA---GLPALRARSERVRCSYAKDAAPVSTKGA 56
Query: 60 VGMSASLLAAACAATMSSPAMALVDERMSTEGTGLPFGLSNNLLGWILLGVFGLIWALYI 119
++ L AA + PA+ALVDERMSTEGTGL GLSNNLLGWILLGVFGLIW+LY
Sbjct: 57 --GASLLAAAGAVTASAGPALALVDERMSTEGTGLSLGLSNNLLGWILLGVFGLIWSLYT 114
Query: 120 PYASSLDEDEESG 132
Y S LDEDEESG
Sbjct: 115 IYTSDLDEDEESG 127
>gi|226495411|ref|NP_001150186.1| LOC100283816 [Zea mays]
gi|195637404|gb|ACG38170.1| photosystem II reaction center W protein [Zea mays]
Length = 127
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/133 (51%), Positives = 87/133 (65%), Gaps = 11/133 (8%)
Query: 1 MAAITASVGTSSITRSVLVHKPSIVASSSPVLGLPAM-AVKGKVRCSMEEKPSKQESKTN 59
MA ++A+V T+ + R+ + +P+ LGLPA+ A +VRCS + + +K
Sbjct: 1 MATVSAAVVTTIVARAA-IARPN-------ALGLPALRASSERVRCSYAKDAAPVSTKGA 52
Query: 60 VGMSASLLAAACAATMSSPAMALVDERMSTEGTGLPFGLSNNLLGWILLGVFGLIWALYI 119
++ L AA + PA+ALVDERMSTEGTGL GLSNNLLGWILLGVFGLIW+LY
Sbjct: 53 --GASLLAAAGAVTASAGPALALVDERMSTEGTGLSLGLSNNLLGWILLGVFGLIWSLYT 110
Query: 120 PYASSLDEDEESG 132
Y S LDEDEESG
Sbjct: 111 IYTSDLDEDEESG 123
>gi|449327302|gb|AGE93844.1| chloroplast photosystem II reaction center W protein, partial
[Posidonia oceanica]
Length = 104
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/104 (60%), Positives = 73/104 (70%), Gaps = 2/104 (1%)
Query: 34 LPAMAVKG-KVRCSMEEKPSKQESKTNVGMSA-SLLAAACAATMSSPAMALVDERMSTEG 91
LP M ++G + CS E + + GM A S+LAA + S PA ALVDERMSTEG
Sbjct: 1 LPQMRMRGGRATCSSERPNANANAAAPAGMGAASMLAAVSVMSASYPAFALVDERMSTEG 60
Query: 92 TGLPFGLSNNLLGWILLGVFGLIWALYIPYASSLDEDEESGLSL 135
TGL GLSNNLLGWILLGVF LIW+LY Y S+L+EDEESGLSL
Sbjct: 61 TGLGLGLSNNLLGWILLGVFALIWSLYSVYTSTLEEDEESGLSL 104
>gi|12584906|gb|AAG59876.1| PSII subunit PsbW, partial [Physcomitrella patens]
Length = 158
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 58/94 (61%), Gaps = 1/94 (1%)
Query: 26 ASSSPVLGLPAMAVKGKVRCSMEEKPSKQESKTNVGMSASLLAAACAATMSSPAMALVDE 85
A+ PV GLPA+ + KV C+ E SK E V A+ + +A S P +ALVDE
Sbjct: 38 ATLKPVAGLPALRMP-KVVCAAERSESKAERVNGVAQLAAAVTSAATLAYSHPVLALVDE 96
Query: 86 RMSTEGTGLPFGLSNNLLGWILLGVFGLIWALYI 119
R+STEGTGL G+SN L WIL+GV LIW LY+
Sbjct: 97 RLSTEGTGLGLGISNTKLTWILVGVTALIWTLYL 130
>gi|242088429|ref|XP_002440047.1| hypothetical protein SORBIDRAFT_09g025010 [Sorghum bicolor]
gi|241945332|gb|EES18477.1| hypothetical protein SORBIDRAFT_09g025010 [Sorghum bicolor]
Length = 63
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/62 (83%), Positives = 56/62 (90%)
Query: 74 TMSSPAMALVDERMSTEGTGLPFGLSNNLLGWILLGVFGLIWALYIPYASSLDEDEESGL 133
T SSPA+ALVDERMSTEGTGL GLSNNLLGWILLGVFGLIW+LY Y S+LDEDE+SGL
Sbjct: 2 TTSSPALALVDERMSTEGTGLSLGLSNNLLGWILLGVFGLIWSLYTVYTSTLDEDEDSGL 61
Query: 134 SL 135
SL
Sbjct: 62 SL 63
>gi|12584902|gb|AAG59874.1| PSII subunit PsbW, partial [Physcomitrella patens]
Length = 109
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/90 (48%), Positives = 57/90 (63%), Gaps = 1/90 (1%)
Query: 30 PVLGLPAMAVKGKVRCSMEEKPSKQESKTNVGMSASLLAAACAATMSSPAMALVDERMST 89
PV GLPA+ + K+ CS E+K S+ E + A+ + +A + P ALVDER+ST
Sbjct: 3 PVSGLPALRMP-KIVCSAEKKESQTEELSGFPQLAAAVTSAATLAYAHPVFALVDERLST 61
Query: 90 EGTGLPFGLSNNLLGWILLGVFGLIWALYI 119
EGTGL G+SN L WIL+GV LIWALY
Sbjct: 62 EGTGLGLGISNTKLTWILVGVTALIWALYF 91
>gi|326520898|dbj|BAJ92812.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326521836|dbj|BAK00494.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 128
Score = 81.6 bits (200), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 60/102 (58%), Positives = 70/102 (68%), Gaps = 2/102 (1%)
Query: 32 LGLPAMAVKG-KVRCSMEEKPSKQESKTNVGMSASLLAAACAATMSSPAMALVDERMSTE 90
LGLP + +G +VRCS K + + ++ L AA + PA+ALVDERMSTE
Sbjct: 24 LGLPQLRTRGERVRCSYS-KEATPAAAARGAGASLLAAAGAVTASAGPALALVDERMSTE 82
Query: 91 GTGLPFGLSNNLLGWILLGVFGLIWALYIPYASSLDEDEESG 132
GTGL GLSNNLLGWILLGVFGLIW+LY Y S LDEDEESG
Sbjct: 83 GTGLSLGLSNNLLGWILLGVFGLIWSLYTVYTSGLDEDEESG 124
>gi|242058865|ref|XP_002458578.1| hypothetical protein SORBIDRAFT_03g036090 [Sorghum bicolor]
gi|241930553|gb|EES03698.1| hypothetical protein SORBIDRAFT_03g036090 [Sorghum bicolor]
Length = 126
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/105 (58%), Positives = 71/105 (67%), Gaps = 3/105 (2%)
Query: 32 LGLPAMAVKG-KVRCSMEEKPSKQESKTNVGMSASLLAAACAATMSSPAMALVDERMSTE 90
LGLP + + +VRCS + + +K + AA + PA+ALVDERMSTE
Sbjct: 24 LGLPQLRARSERVRCSYAKDAAAVSAKAAGASLLA--AAGAVTASAGPALALVDERMSTE 81
Query: 91 GTGLPFGLSNNLLGWILLGVFGLIWALYIPYASSLDEDEESGLSL 135
GTGL GLSNNLLGWILLGVFGLIW+LY Y S LDEDEESGLSL
Sbjct: 82 GTGLSLGLSNNLLGWILLGVFGLIWSLYTVYTSDLDEDEESGLSL 126
>gi|357136683|ref|XP_003569933.1| PREDICTED: photosystem II reaction center W protein,
chloroplastic-like [Brachypodium distachyon]
Length = 131
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/104 (56%), Positives = 72/104 (69%), Gaps = 3/104 (2%)
Query: 32 LGLPAMAVKG-KVRCSMEEKPSKQESKTNV--GMSASLLAAACAATMSSPAMALVDERMS 88
LGLP + + +VRCS + + T+V ++ L AA ++PA+ALVD+RMS
Sbjct: 24 LGLPQLRARSERVRCSYSKDAKEATPTTSVRGAGASLLAAAGAVTASAAPALALVDDRMS 83
Query: 89 TEGTGLPFGLSNNLLGWILLGVFGLIWALYIPYASSLDEDEESG 132
TEGTGL GLSNNLLGWILLGVFGLIW+LY Y S LDEDEESG
Sbjct: 84 TEGTGLSLGLSNNLLGWILLGVFGLIWSLYTVYTSGLDEDEESG 127
>gi|357133070|ref|XP_003568151.1| PREDICTED: photosystem II reaction center W protein,
chloroplastic-like [Brachypodium distachyon]
Length = 122
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/134 (48%), Positives = 83/134 (61%), Gaps = 18/134 (13%)
Query: 1 MAAITASVGTSSITRSVLVHKPSIVASSSPVLGLPAMAV--KGKVRCSMEEKPSKQESKT 58
MA I+A+VG ++ A S GLP + V +++C + +
Sbjct: 1 MATISAAVGFAT-------------ARPSQASGLPQLRVVRAERLKCGYSKDGKSTAAVA 47
Query: 59 NVGMSASLLAAACAATMSSPAMALVDERMSTEGTGLPFGLSNNLLGWILLGVFGLIWALY 118
V +A L+AA AA PA+ALVDERMSTEGTGL GLSNNLLGWILLGVFGLIW+LY
Sbjct: 48 VVKGAAPLVAAVTAA---GPALALVDERMSTEGTGLSLGLSNNLLGWILLGVFGLIWSLY 104
Query: 119 IPYASSLDEDEESG 132
Y+S+LD+D+ESG
Sbjct: 105 TVYSSTLDDDDESG 118
>gi|326504096|dbj|BAK02834.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 98
Score = 78.2 bits (191), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 58/91 (63%), Positives = 68/91 (74%), Gaps = 4/91 (4%)
Query: 42 KVRCSMEEKPSKQESKTNVGMSASLLAAACAATMSSPAMALVDERMSTEGTGLPFGLSNN 101
++RC SK + V A LLAA AA +SPA+ALVDERMSTEGTGL GLSNN
Sbjct: 8 RLRCGY----SKDGKEAAVLKGAPLLAAVSAAVTASPALALVDERMSTEGTGLSLGLSNN 63
Query: 102 LLGWILLGVFGLIWALYIPYASSLDEDEESG 132
LLGWILLGVFGLIW+LY Y+S+LD+D+ESG
Sbjct: 64 LLGWILLGVFGLIWSLYTVYSSTLDDDDESG 94
>gi|12584904|gb|AAG59875.1| PSII subunit PsbW, partial [Physcomitrella patens]
Length = 69
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 41/67 (61%), Positives = 50/67 (74%), Gaps = 3/67 (4%)
Query: 72 AATMS--SPAMALVDERMSTEGTGLPFGLSNNLLGWILLGVFGLIWALYIPYASSLDE-D 128
AAT++ P ALVDER+STEGTGL G+SN L WIL+GV LIWALY Y+S+L E D
Sbjct: 3 AATLAYAHPVFALVDERLSTEGTGLGLGISNTKLTWILVGVTALIWALYFSYSSTLPEGD 62
Query: 129 EESGLSL 135
++SGL L
Sbjct: 63 DDSGLDL 69
>gi|168045137|ref|XP_001775035.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673622|gb|EDQ60142.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 67
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 41/67 (61%), Positives = 50/67 (74%), Gaps = 3/67 (4%)
Query: 72 AATMS--SPAMALVDERMSTEGTGLPFGLSNNLLGWILLGVFGLIWALYIPYASSLDE-D 128
AAT++ P ALVDER+STEGTGL G+SN L WIL+GV LIWALY Y+S+L E D
Sbjct: 1 AATLAYAHPVFALVDERLSTEGTGLGLGISNTKLTWILVGVTALIWALYFSYSSTLPEGD 60
Query: 129 EESGLSL 135
++SGL L
Sbjct: 61 DDSGLDL 67
>gi|302846973|ref|XP_002955022.1| photosystem II subunit W, chloroplast precursor [Volvox carteri f.
nagariensis]
gi|300259785|gb|EFJ44010.1| photosystem II subunit W, chloroplast precursor [Volvox carteri f.
nagariensis]
Length = 115
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 51/73 (69%), Gaps = 2/73 (2%)
Query: 65 SLLAAACAATMSSPAMALVDERMSTEGTGLPFGLSNNLLGWILLGVFGLIWALYIPYASS 124
+LL+ A +SPA ALVD+RM+ +GTGLPFG++ +LGW+L GVFG++WAL+
Sbjct: 43 ALLSTLPATLAASPAWALVDDRMNGDGTGLPFGVNEPVLGWVLTGVFGVMWALWFNGQRD 102
Query: 125 LD--EDEESGLSL 135
L ED +SGL L
Sbjct: 103 LGDFEDNDSGLKL 115
>gi|159488012|ref|XP_001702016.1| photosystem II reaction center W protein [Chlamydomonas
reinhardtii]
gi|20139842|sp|Q9SPI9.1|PSBW_CHLRE RecName: Full=Photosystem II reaction center W protein,
chloroplastic; AltName: Full=PSII 6.1 kDa protein;
Flags: Precursor
gi|5739404|gb|AAD50464.1|AF170026_1 core subunit of photosystem II precursor [Chlamydomonas
reinhardtii]
gi|158271473|gb|EDO97291.1| photosystem II reaction center W protein [Chlamydomonas
reinhardtii]
Length = 115
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 52/81 (64%), Gaps = 2/81 (2%)
Query: 57 KTNVGMSASLLAAACAATMSSPAMALVDERMSTEGTGLPFGLSNNLLGWILLGVFGLIWA 116
++ V ++L+ A + PA ALVDERM+ +GTG PFG+++ +LGW+LLGVFG +WA
Sbjct: 35 RSEVAKKVAMLSTLPATLAAHPAFALVDERMNGDGTGRPFGVNDPVLGWVLLGVFGTMWA 94
Query: 117 LYIPYASSLD--EDEESGLSL 135
++ L ED + GL L
Sbjct: 95 IWFIGQKDLGDFEDADDGLKL 115
>gi|168024725|ref|XP_001764886.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683922|gb|EDQ70328.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 64
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/61 (60%), Positives = 47/61 (77%), Gaps = 1/61 (1%)
Query: 76 SSPAMALVDERMSTEGTGLPFGLSNNLLGWILLGVFGLIWALYIPYASSLDE-DEESGLS 134
+ P ALVDER+STEGTGL G+SN L WIL+GV L+WA+Y Y+S+L E D++SGLS
Sbjct: 4 AHPVFALVDERLSTEGTGLGLGVSNPKLTWILVGVTALVWAVYFTYSSTLPEGDDDSGLS 63
Query: 135 L 135
L
Sbjct: 64 L 64
>gi|115440245|ref|NP_001044402.1| Os01g0773700 [Oryza sativa Japonica Group]
gi|75112952|sp|Q5ZBY9.1|PSBW_ORYSJ RecName: Full=Photosystem II reaction center W protein,
chloroplastic; AltName: Full=PSII 6.1 kDa protein;
Flags: Precursor
gi|53793363|dbj|BAD52944.1| putative photosystem II reaction center W protein [Oryza sativa
Japonica Group]
gi|113533933|dbj|BAF06316.1| Os01g0773700 [Oryza sativa Japonica Group]
gi|125527886|gb|EAY76000.1| hypothetical protein OsI_03925 [Oryza sativa Indica Group]
gi|215765750|dbj|BAG87447.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767329|dbj|BAG99557.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 124
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/103 (56%), Positives = 70/103 (67%), Gaps = 6/103 (5%)
Query: 32 LGLPAMAVKG--KVRCSMEEKPSKQESKTNVGMSASLLAAACAATMSSPAMALVDERMST 89
LGLP M + +VRC+ SK+ + + + + A ++PAMALVDERMST
Sbjct: 22 LGLPQMRARRSERVRCNY----SKEAATPAAAVKGAGASLLAMAATAAPAMALVDERMST 77
Query: 90 EGTGLPFGLSNNLLGWILLGVFGLIWALYIPYASSLDEDEESG 132
EGTGL GLSNNLLGWILLGVFGLIW+LY Y S L+EDEESG
Sbjct: 78 EGTGLSLGLSNNLLGWILLGVFGLIWSLYTIYTSDLEEDEESG 120
>gi|87313199|gb|ABD37896.1| photosystem II reaction center W protein [Mesostigma viride]
Length = 128
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 40/58 (68%)
Query: 78 PAMALVDERMSTEGTGLPFGLSNNLLGWILLGVFGLIWALYIPYASSLDEDEESGLSL 135
PA A++++ M TEG G+ GL++ LG+++LG F L+W+LY Y SLD E+ GL L
Sbjct: 71 PAQAIIEDAMYTEGAGIALGLNSGALGFVMLGAFTLVWSLYSSYTRSLDSSEDGGLDL 128
>gi|222619335|gb|EEE55467.1| hypothetical protein OsJ_03635 [Oryza sativa Japonica Group]
Length = 107
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/50 (84%), Positives = 44/50 (88%)
Query: 83 VDERMSTEGTGLPFGLSNNLLGWILLGVFGLIWALYIPYASSLDEDEESG 132
VDERMSTEGTGL GLSNNLLGWILLGVFGLIW+LY Y S L+EDEESG
Sbjct: 54 VDERMSTEGTGLSLGLSNNLLGWILLGVFGLIWSLYTIYTSDLEEDEESG 103
>gi|193875822|gb|ACF24547.1| photosystem II reaction center W protein [Gymnochlora stellata]
Length = 147
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 58/100 (58%), Gaps = 8/100 (8%)
Query: 38 AVKGKVRCSMEEKPSKQESKTNVGMSASLLAAACAATMSSPAMALVDERMSTEGTGLPFG 97
AV K + E + Q + VG+SA+ AA PA ALVD R++ +G G+P G
Sbjct: 53 AVYAKKGLNTESLKNFQRNMAAVGLSAT------AALHQLPAEALVDARLNGDGAGIPLG 106
Query: 98 LSNNLLGWILLGVFGLIWALYIPYASSL--DEDEESGLSL 135
++++ L +IL GVF L+WA Y + ++D++SGLS+
Sbjct: 107 INDSRLFFILAGVFTLVWAAYSTSVKGISNNDDDDSGLSI 146
>gi|32307612|gb|AAP79211.1| photosystem II protein PsbW [Bigelowiella natans]
Length = 147
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 56/104 (53%), Gaps = 3/104 (2%)
Query: 35 PAMAVKGKVRCSMEEKPSKQESKTNVGMSASLLAAACAATMSS-PAMALVDERMSTEGTG 93
P +V+ + +KPS +++ N + A + PA ALVD R++ +G G
Sbjct: 43 PVSSVRAGRMATFAQKPSMKQNMQNFQKTMGAAGLAAVGALHQLPAEALVDSRLNGDGAG 102
Query: 94 LPFGLSNNLLGWILLGVFGLIWALYIPYASSL--DEDEESGLSL 135
+P GL+++ L +IL GVF +W +Y + ++DE+SG+ L
Sbjct: 103 IPLGLNDSRLFFILAGVFTTVWGVYATSVKGISDNDDEDSGMGL 146
>gi|255086475|ref|XP_002509204.1| photosystem II 13kD protein, chloroplast precursor [Micromonas sp.
RCC299]
gi|226524482|gb|ACO70462.1| photosystem II 13kD protein, chloroplast precursor [Micromonas sp.
RCC299]
Length = 118
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 64/112 (57%), Gaps = 20/112 (17%)
Query: 43 VRCSMEEKPSKQE------------SKTNVGMSASLLAAACAATMSS-PAMALVDERMST 89
++C++ KP+ ++ +K +V A L AA + PA+A+VDER++
Sbjct: 8 MKCAVAAKPAARKVARKATVAKATVAKASVPKKAVLSAAVTGLVAQTLPALAVVDERLNG 67
Query: 90 EGTGLPFGLSNNLLGWILLGVFGLIWALYIPYASSLD------EDEESGLSL 135
+GTGL G+++ +LG+ILL + L+++ + YA D E+++SGLSL
Sbjct: 68 DGTGLILGINDEILGFILLTIPALVFSQFF-YAQKDDGIAAGGENDDSGLSL 118
>gi|300244372|gb|ADJ93801.1| chloroplast photosystem II reaction center W precursor [Euglena
gracilis]
Length = 105
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 39/56 (69%), Gaps = 2/56 (3%)
Query: 82 LVDERMSTEGTGLPFGLSNNLLGWILLGVFGLIWALYIPYASSL--DEDEESGLSL 135
LVDER++ EGTGLP G+++ +L W++L VF IWAL+ + ++D +SG+ L
Sbjct: 49 LVDERLNGEGTGLPLGINDPILFWVMLTVFTTIWALWATSVKEISNNDDPDSGVGL 104
>gi|145343564|ref|XP_001416389.1| Photosystem II reaction center W protein, chloroplast precursor
[Ostreococcus lucimarinus CCE9901]
gi|144576614|gb|ABO94682.1| Photosystem II reaction center W protein, chloroplast precursor
[Ostreococcus lucimarinus CCE9901]
Length = 162
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 43/64 (67%), Gaps = 6/64 (9%)
Query: 78 PAMALVDERMSTEGTGLPFGLSNNLLGWIL----LGVFGLIWALYIPYASSL--DEDEES 131
PA+A+VD+R++ +GTGLP G+++ LG IL L +FGL + AS + +D++S
Sbjct: 99 PALAIVDDRLNGDGTGLPLGINDGALGIILATVPLAIFGLYFIAGKQDASIVAGGKDDDS 158
Query: 132 GLSL 135
GLSL
Sbjct: 159 GLSL 162
>gi|303284523|ref|XP_003061552.1| photosystem II 13kD protein, chloroplast precursor [Micromonas
pusilla CCMP1545]
gi|226456882|gb|EEH54182.1| photosystem II 13kD protein, chloroplast precursor [Micromonas
pusilla CCMP1545]
Length = 119
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 42/61 (68%), Gaps = 9/61 (14%)
Query: 82 LVDERMSTEGTGLPFGLSNNLLGWILLGVFGLIWALYIPYASSLDE-------DEESGLS 134
+VDER++ +GTGL GL++ LLG++LL + LI++ + YA+ DE +++SGLS
Sbjct: 61 VVDERLNGDGTGLILGLNDELLGFVLLTIPTLIFSQF--YAAQKDEGIEAGGKNDDSGLS 118
Query: 135 L 135
L
Sbjct: 119 L 119
>gi|308800518|ref|XP_003075040.1| Photosystem II 13kD Protein, chloroplast precursor (putative) (IC)
[Ostreococcus tauri]
gi|116061594|emb|CAL52312.1| Photosystem II 13kD Protein, chloroplast precursor (putative) (IC)
[Ostreococcus tauri]
Length = 156
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 67/126 (53%), Gaps = 19/126 (15%)
Query: 23 SIVASSSPVLGL------PAMAVKGKVRCSMEEKPSKQESKTNVGMSASLLAAACAATMS 76
+I++S SP+ L P A + ++ P QE+ V S+L ++ +
Sbjct: 37 TILSSLSPICNLSPRRAGPRQASNQRHGVTVRATP--QEAGKQV-FGTSMLISSMNTVL- 92
Query: 77 SPAMALVDERMSTEGTGLPFGLSNNLLGWILLGVFGLIWALYIPYASSLD-------EDE 129
PA+A+VD+R++ +GTGLP G+++ LG IL V I++LY A D +++
Sbjct: 93 -PALAIVDDRLNGDGTGLPLGINDGALGIILASVPLAIFSLYF-IAGKQDAGIENGGKND 150
Query: 130 ESGLSL 135
+SGLSL
Sbjct: 151 DSGLSL 156
>gi|302785105|ref|XP_002974324.1| hypothetical protein SELMODRAFT_101359 [Selaginella moellendorffii]
gi|302818389|ref|XP_002990868.1| hypothetical protein SELMODRAFT_132398 [Selaginella moellendorffii]
gi|300141429|gb|EFJ08141.1| hypothetical protein SELMODRAFT_132398 [Selaginella moellendorffii]
gi|300157922|gb|EFJ24546.1| hypothetical protein SELMODRAFT_101359 [Selaginella moellendorffii]
Length = 67
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 35/53 (66%)
Query: 80 MALVDERMSTEGTGLPFGLSNNLLGWILLGVFGLIWALYIPYASSLDEDEESG 132
+ALVDER+STEGTGL G+S+ L WIL+ V +W + ++ +L E+ G
Sbjct: 11 LALVDERLSTEGTGLGLGVSDGSLAWILVIVPFALWGFFYSFSQTLPSGEDDG 63
>gi|384248495|gb|EIE21979.1| hypothetical protein COCSUDRAFT_48009 [Coccomyxa subellipsoidea
C-169]
Length = 146
Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Query: 83 VDERMSTEGTGLPFGLSNNLLGWILLGVFGLIWALYIPYASSLDE----DEESGLSL 135
VD R++ +GTG G++ G+ +LGVF LIW LY + E ++SGL+L
Sbjct: 90 VDSRLNGDGTGKALGVATGAEGFAILGVFTLIWILYYIATKDVGEGRGSGDDSGLTL 146
>gi|412990206|emb|CCO19524.1| photosystem II 13kD protein, chloroplast precursor [Bathycoccus
prasinos]
Length = 69
Score = 41.6 bits (96), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 40/61 (65%), Gaps = 10/61 (16%)
Query: 83 VDERMSTEGTGLPFGLSNNLLGWILLGVFGL-IWALYIPYASSLD-------EDEESGLS 134
VD+R++ +GTGLP G+++ LG I+LGV L I+ALY A D +D+ESGLS
Sbjct: 11 VDDRLNGDGTGLPLGINDGALG-IVLGVVPLGIFALYFT-AGKQDSDIIAGGKDDESGLS 68
Query: 135 L 135
L
Sbjct: 69 L 69
>gi|2493695|sp|P55967.1|PSBW_WHEAT RecName: Full=Photosystem II reaction center W protein; AltName:
Full=PSII 6.1 kDa protein
Length = 20
Score = 39.7 bits (91), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 18/20 (90%), Positives = 18/20 (90%)
Query: 82 LVDERMSTEGTGLPFGLSNN 101
LVDERMSTEGTGL GLSNN
Sbjct: 1 LVDERMSTEGTGLSLGLSNN 20
>gi|47216760|emb|CAG03764.1| unnamed protein product [Tetraodon nigroviridis]
Length = 1128
Score = 39.7 bits (91), Expect = 0.43, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 5/78 (6%)
Query: 43 VRCSMEEKPSKQESKTNVGMSASLLAAACAATMSSPAM-ALVDERMSTEGTGLPFGLSNN 101
V +MEE PSK+ + + +AS + +A + +S M A+V+ ++ T+ P G
Sbjct: 971 VEVAMEEAPSKESDRGRIQKAASAIISALSKRHNSTVMLAVVEVKVETQAEPPPIGYLVP 1030
Query: 102 LLGWILLGVFGLIWALYI 119
+LG VFGL+W + I
Sbjct: 1031 VLGV----VFGLLWIVCI 1044
>gi|1050976|gb|AAB34895.1| 6.1 kda nuclear-encoded photosystem II reaction center subunit
{N-terminal} [Spinacia oleracea=spinach, Peptide
Partial, 19 aa]
Length = 19
Score = 38.5 bits (88), Expect = 0.82, Method: Composition-based stats.
Identities = 18/19 (94%), Positives = 18/19 (94%)
Query: 82 LVDERMSTEGTGLPFGLSN 100
LVDERMSTEGTGLPFGL N
Sbjct: 1 LVDERMSTEGTGLPFGLMN 19
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.313 0.126 0.352
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,989,698,344
Number of Sequences: 23463169
Number of extensions: 73322882
Number of successful extensions: 186037
Number of sequences better than 100.0: 113
Number of HSP's better than 100.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 185905
Number of HSP's gapped (non-prelim): 115
length of query: 135
length of database: 8,064,228,071
effective HSP length: 100
effective length of query: 35
effective length of database: 10,012,878,467
effective search space: 350450746345
effective search space used: 350450746345
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 71 (32.0 bits)