BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032691
         (135 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q41387|PSBW_SPIOL Photosystem II reaction center W protein, chloroplastic OS=Spinacia
           oleracea GN=psbW PE=1 SV=1
          Length = 137

 Score =  164 bits (414), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 96/137 (70%), Positives = 107/137 (78%), Gaps = 2/137 (1%)

Query: 1   MAAITASVGTSSITRSVLVHKPSIVASSSPVLGLPAMAVKGKVRCSMEEKPSKQESKT-- 58
           MA ITAS   S + R+ LVH   +  SSSP+LGLP+M  + KV CS+E KPS  E+ T  
Sbjct: 1   MATITASSSASLVARASLVHNSRVGVSSSPILGLPSMTKRSKVTCSIENKPSTTETTTTT 60

Query: 59  NVGMSASLLAAACAATMSSPAMALVDERMSTEGTGLPFGLSNNLLGWILLGVFGLIWALY 118
           N  M ASLLAAA AAT+S+PAMALVDERMSTEGTGLPFGLSNNLLGWIL GVFGLIWALY
Sbjct: 61  NKSMGASLLAAAAAATISNPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWALY 120

Query: 119 IPYASSLDEDEESGLSL 135
             YAS L+EDEESGLSL
Sbjct: 121 FVYASGLEEDEESGLSL 137


>sp|Q39194|PSBW_ARATH Photosystem II reaction center W protein, chloroplastic
           OS=Arabidopsis thaliana GN=PSBW PE=1 SV=2
          Length = 133

 Score =  148 bits (374), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 87/137 (63%), Positives = 98/137 (71%), Gaps = 6/137 (4%)

Query: 1   MAAITASVGTSSITRSVLVHKPSIVASSSPVLGLPAMAVK-GKVRCSMEEKPSKQESKTN 59
           MA+ TAS  T S  R  L+ KP+ VA S+PVLGLP M  K G VRCSME   +KQ + + 
Sbjct: 1   MASFTASASTVSAARPALLLKPT-VAISAPVLGLPPMGKKKGGVRCSME---TKQGNVSV 56

Query: 60  VGMSASLLAAACAA-TMSSPAMALVDERMSTEGTGLPFGLSNNLLGWILLGVFGLIWALY 118
           +G   S  A A     MS+PAMALVDERMSTEGTGLPFGLSNNLLGWIL GVFGLIW  +
Sbjct: 57  MGAGVSAAATAALTAVMSNPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWTFF 116

Query: 119 IPYASSLDEDEESGLSL 135
             Y SSL+EDEESGLSL
Sbjct: 117 FVYTSSLEEDEESGLSL 133


>sp|Q9SPI9|PSBW_CHLRE Photosystem II reaction center W protein, chloroplastic
           OS=Chlamydomonas reinhardtii GN=psbW PE=1 SV=1
          Length = 115

 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 35/81 (43%), Positives = 52/81 (64%), Gaps = 2/81 (2%)

Query: 57  KTNVGMSASLLAAACAATMSSPAMALVDERMSTEGTGLPFGLSNNLLGWILLGVFGLIWA 116
           ++ V    ++L+   A   + PA ALVDERM+ +GTG PFG+++ +LGW+LLGVFG +WA
Sbjct: 35  RSEVAKKVAMLSTLPATLAAHPAFALVDERMNGDGTGRPFGVNDPVLGWVLLGVFGTMWA 94

Query: 117 LYIPYASSLD--EDEESGLSL 135
           ++      L   ED + GL L
Sbjct: 95  IWFIGQKDLGDFEDADDGLKL 115


>sp|Q5ZBY9|PSBW_ORYSJ Photosystem II reaction center W protein, chloroplastic OS=Oryza
           sativa subsp. japonica GN=PSBW PE=2 SV=1
          Length = 124

 Score = 70.1 bits (170), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 58/103 (56%), Positives = 70/103 (67%), Gaps = 6/103 (5%)

Query: 32  LGLPAMAVKG--KVRCSMEEKPSKQESKTNVGMSASLLAAACAATMSSPAMALVDERMST 89
           LGLP M  +   +VRC+     SK+ +     +  +  +    A  ++PAMALVDERMST
Sbjct: 22  LGLPQMRARRSERVRCNY----SKEAATPAAAVKGAGASLLAMAATAAPAMALVDERMST 77

Query: 90  EGTGLPFGLSNNLLGWILLGVFGLIWALYIPYASSLDEDEESG 132
           EGTGL  GLSNNLLGWILLGVFGLIW+LY  Y S L+EDEESG
Sbjct: 78  EGTGLSLGLSNNLLGWILLGVFGLIWSLYTIYTSDLEEDEESG 120


>sp|P55967|PSBW_WHEAT Photosystem II reaction center W protein (Fragment) OS=Triticum
           aestivum GN=psbW PE=1 SV=1
          Length = 20

 Score = 39.7 bits (91), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 18/20 (90%), Positives = 18/20 (90%)

Query: 82  LVDERMSTEGTGLPFGLSNN 101
           LVDERMSTEGTGL  GLSNN
Sbjct: 1   LVDERMSTEGTGLSLGLSNN 20


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.313    0.126    0.352 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,203,774
Number of Sequences: 539616
Number of extensions: 1669443
Number of successful extensions: 3449
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 3439
Number of HSP's gapped (non-prelim): 21
length of query: 135
length of database: 191,569,459
effective HSP length: 100
effective length of query: 35
effective length of database: 137,607,859
effective search space: 4816275065
effective search space used: 4816275065
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)