Query 032691
Match_columns 135
No_of_seqs 44 out of 46
Neff 2.5
Searched_HMMs 29240
Date Mon Mar 25 07:09:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032691.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032691hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1iv0_A Hypothetical protein; r 35.6 7.5 0.00026 26.7 -0.1 11 79-89 87-97 (98)
2 2y69_L Cytochrome C oxidase su 25.7 96 0.0033 20.3 4.0 31 89-119 22-53 (63)
3 1nu0_A Hypothetical protein YQ 25.4 13 0.00046 26.8 -0.2 13 79-91 90-102 (138)
4 2kse_A Sensor protein QSEC; me 22.8 44 0.0015 21.8 1.9 24 108-131 24-47 (186)
5 1v54_L VIIIA, cytochrome C oxi 18.2 1.5E+02 0.0052 18.3 3.6 31 89-119 6-37 (47)
6 1v54_J Cytochrome C oxidase po 14.4 95 0.0032 20.0 2.0 33 91-123 15-53 (59)
7 2yrp_A Nuclear factor of activ 10.9 79 0.0027 22.9 0.9 18 32-49 6-23 (114)
8 2yrn_A Neuron navigator 2 isof 10.1 1.5E+02 0.005 20.4 2.0 15 109-123 111-125 (129)
9 3arc_L Photosystem II reaction 9.8 2.6E+02 0.0088 17.1 2.8 26 95-120 9-36 (37)
10 2vzc_A Alpha-parvin; membrane, 8.1 1.8E+02 0.006 20.5 1.8 14 110-123 116-129 (131)
No 1
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=35.59 E-value=7.5 Score=26.66 Aligned_cols=11 Identities=45% Similarity=0.655 Sum_probs=9.5
Q ss_pred chhhhhhcccC
Q 032691 79 AMALVDERMST 89 (135)
Q Consensus 79 A~ALVDeRlst 89 (135)
-..+||||++|
T Consensus 87 pV~~~DERlTT 97 (98)
T 1iv0_A 87 EVELWDERFTT 97 (98)
T ss_dssp EEEEECCSCCC
T ss_pred CEEEECCCCCC
Confidence 46899999997
No 2
>2y69_L Cytochrome C oxidase subunit 7C; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=25.68 E-value=96 Score=20.30 Aligned_cols=31 Identities=26% Similarity=0.373 Sum_probs=22.0
Q ss_pred CCCCCcccccccch-hHHHHHHHHHHHHHHHH
Q 032691 89 TEGTGLPFGLSNNL-LGWILLGVFGLIWALYI 119 (135)
Q Consensus 89 teGTGl~lGlsn~~-LgwILlgVf~liW~ly~ 119 (135)
+.|.=|||.+.|-. +.+.+.+.|++-+++=|
T Consensus 22 Gp~sNLPF~~~nk~~~~~~~~~f~g~GF~~PF 53 (63)
T 2y69_L 22 GPGKNIPFSVENKWRLLAMMTLFFGSGFAAPF 53 (63)
T ss_dssp STTTSSSSCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcCCcCCcchhHHHHHHHHHHHHHHhhhH
Confidence 56777999999887 66666666666665544
No 3
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=25.35 E-value=13 Score=26.84 Aligned_cols=13 Identities=46% Similarity=0.539 Sum_probs=10.5
Q ss_pred chhhhhhcccCCC
Q 032691 79 AMALVDERMSTEG 91 (135)
Q Consensus 79 A~ALVDeRlsteG 91 (135)
-..+||||++|.-
T Consensus 90 pV~~~DERlTT~~ 102 (138)
T 1nu0_A 90 EVKLHDERLSTVE 102 (138)
T ss_dssp CEEEEEEECCCCC
T ss_pred CEEEEcCCcCHHH
Confidence 4679999999953
No 4
>2kse_A Sensor protein QSEC; methods development, histidine kinase receptor, membrane domain, two-helical hairpin, cell-free synthesis, ATP- binding; NMR {Escherichia coli}
Probab=22.77 E-value=44 Score=21.82 Aligned_cols=24 Identities=8% Similarity=0.039 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHhhcCcCCCCCCC
Q 032691 108 LGVFGLIWALYIPYASSLDEDEES 131 (135)
Q Consensus 108 lgVf~liW~ly~~~~~~l~edddS 131 (135)
+.+....|.+|+...+.+++..|.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~d~ 47 (186)
T 2kse_A 24 VTWLLSSFVAWKQTTDNVDELFDT 47 (186)
T ss_dssp HHHHHHHHHHSCCCSCC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455566666666554443
No 5
>1v54_L VIIIA, cytochrome C oxidase polypeptide VIIC; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.6.1 PDB: 1oco_L* 1occ_L* 1ocz_L* 1ocr_L* 1v55_L* 2dyr_L* 2dys_L* 2eij_L* 2eik_L* 2eil_L* 2eim_L* 2ein_L* 2occ_L* 2ybb_W* 2zxw_L* 3abk_L* 3abl_L* 3abm_L* 3ag1_L* 3ag2_L* ...
Probab=18.24 E-value=1.5e+02 Score=18.29 Aligned_cols=31 Identities=26% Similarity=0.373 Sum_probs=20.7
Q ss_pred CCCCCcccccccch-hHHHHHHHHHHHHHHHH
Q 032691 89 TEGTGLPFGLSNNL-LGWILLGVFGLIWALYI 119 (135)
Q Consensus 89 teGTGl~lGlsn~~-LgwILlgVf~liW~ly~ 119 (135)
+.|.=|||.+.|-. +.+.+.+.|++-+++=|
T Consensus 6 gp~sNLPF~~~nk~~~~~~~~~f~g~GF~~PF 37 (47)
T 1v54_L 6 GPGKNIPFSVENKWRLLAMMTLFFGSGFAAPF 37 (47)
T ss_dssp STTTSSSSCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcCCcCCCcccHHHHHHHHHHHHHHHhHH
Confidence 56778999999887 55555555555555433
No 6
>1v54_J Cytochrome C oxidase polypeptide VIIA-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.4.1 PDB: 1oco_J* 1occ_J* 1ocz_J* 1ocr_J* 1v55_J* 2dyr_J* 2dys_J* 2eij_J* 2eik_J* 2eil_J* 2eim_J* 2ein_J* 2occ_J* 2ybb_U* 2zxw_J* 3abk_J* 3abl_J* 3abm_J* 3ag1_J* 3ag2_J* ...
Probab=14.45 E-value=95 Score=19.99 Aligned_cols=33 Identities=30% Similarity=0.492 Sum_probs=20.5
Q ss_pred CCCccc----ccccchhHHHH--HHHHHHHHHHHHhhcC
Q 032691 91 GTGLPF----GLSNNLLGWIL--LGVFGLIWALYIPYAS 123 (135)
Q Consensus 91 GTGl~l----Glsn~~LgwIL--lgVf~liW~ly~~~~~ 123 (135)
-.|+|+ |-+|..|-.++ +.++++.+++|..+.-
T Consensus 15 ~~g~pv~lKgg~sd~~Ly~~t~~l~~~g~~~~~y~l~~~ 53 (59)
T 1v54_J 15 DNGLPVHLKGGATDNILYRVTMTLCLGGTLYSLYCLGWA 53 (59)
T ss_dssp SSCCCTTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCceeEeecCcCceeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335554 45555665555 5566788888887643
No 7
>2yrp_A Nuclear factor of activated T-cells, cytoplasmic 4; beta-sandwich, immunoglobulin-like fold, TIG domain, IPT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=10.89 E-value=79 Score=22.90 Aligned_cols=18 Identities=28% Similarity=0.530 Sum_probs=14.3
Q ss_pred cCcccccccceeeeeecc
Q 032691 32 LGLPAMAVKGKVRCSMEE 49 (135)
Q Consensus 32 ~GLP~m~~~~~vrCs~~~ 49 (135)
.|||.+-|..+..|+...
T Consensus 6 ~~~P~I~k~s~~s~~v~G 23 (114)
T 2yrp_A 6 SGLPQVEAYSPSACSVRG 23 (114)
T ss_dssp CSCCEEEEEESSCEETTC
T ss_pred CCCCEEEEecCcccccCC
Confidence 599999988877777654
No 8
>2yrn_A Neuron navigator 2 isoform 4; calponin homolgy domain, helicase, all alpha, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=10.11 E-value=1.5e+02 Score=20.45 Aligned_cols=15 Identities=20% Similarity=0.366 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHhhcC
Q 032691 109 GVFGLIWALYIPYAS 123 (135)
Q Consensus 109 gVf~liW~ly~~~~~ 123 (135)
-+.+|||+|+-.++.
T Consensus 111 ~iL~Llw~L~r~~q~ 125 (129)
T 2yrn_A 111 AILGLFFSLSRYKQQ 125 (129)
T ss_dssp HHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHhh
Confidence 366889999766553
No 9
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=9.75 E-value=2.6e+02 Score=17.07 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=15.7
Q ss_pred ccccccchhHHHHHHHH--HHHHHHHHh
Q 032691 95 PFGLSNNLLGWILLGVF--GLIWALYIP 120 (135)
Q Consensus 95 ~lGlsn~~LgwILlgVf--~liW~ly~~ 120 (135)
+.-+|-..|-|=|+=|| ++.++-||.
T Consensus 9 ~VELNRTSLy~GLLlifvlavlFssyff 36 (37)
T 3arc_L 9 PVELNRTSLYLGLLLILVLALLFSSYFF 36 (37)
T ss_dssp CBCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cceechhhHHHHHHHHHHHHHHhhhhcc
Confidence 34456666666655554 556777764
No 10
>2vzc_A Alpha-parvin; membrane, cytoplasm, cytoskeleton, cell junction, alternative splicing, calponin homology domain, actin-binding, cell membrane; 1.05A {Homo sapiens} PDB: 2vzd_A* 2vzg_B* 2vzi_B* 2k2r_A 3kmu_B 3kmw_B* 3rep_B*
Probab=8.06 E-value=1.8e+02 Score=20.49 Aligned_cols=14 Identities=14% Similarity=0.605 Sum_probs=10.9
Q ss_pred HHHHHHHHHHhhcC
Q 032691 110 VFGLIWALYIPYAS 123 (135)
Q Consensus 110 Vf~liW~ly~~~~~ 123 (135)
+.+|||.++.-|+.
T Consensus 116 iLgLiW~li~~~~~ 129 (131)
T 2vzc_A 116 TLRVLYNLFTKYRN 129 (131)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhc
Confidence 45789999887764
Done!