Query 032691
Match_columns 135
No_of_seqs 44 out of 46
Neff 2.5
Searched_HMMs 13730
Date Mon Mar 25 07:09:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032691.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032691hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v54j_ f.23.4.1 (J:) Mitochon 25.4 19 0.0014 22.3 2.1 35 90-124 14-54 (58)
2 d1iv0a_ c.55.3.8 (A:) Hypothet 23.5 7.7 0.00056 24.9 -0.1 13 76-89 85-97 (98)
3 d1nu0a_ c.55.3.8 (A:) Hypothet 14.9 15 0.0011 24.5 -0.1 15 76-91 88-102 (138)
4 d1sh5a1 a.40.1.1 (A:8-127) Act 14.4 38 0.0028 21.4 1.8 14 109-122 99-112 (120)
5 d2e74g1 f.23.26.1 (G:9-35) Pet 13.9 93 0.0068 16.5 3.0 22 102-123 2-23 (27)
6 d2axtl1 f.23.31.1 (L:1-37) Pho 12.0 91 0.0066 17.6 2.8 26 95-120 9-36 (37)
7 d1v54l_ f.23.6.1 (L:) Mitochon 10.6 1.4E+02 0.011 17.4 3.5 25 89-116 5-29 (46)
8 d1dxxa1 a.40.1.1 (A:9-119) Dys 8.9 74 0.0054 19.6 1.8 13 110-122 99-111 (111)
9 d1aoaa2 a.40.1.1 (A:260-375) F 8.9 64 0.0047 19.7 1.4 9 110-118 107-115 (116)
10 d1vhxa_ c.55.3.8 (A:) Hypothet 7.8 32 0.0023 22.9 -0.5 14 76-90 89-102 (140)
No 1
>d1v54j_ f.23.4.1 (J:) Mitochondrial cytochrome c oxidase subunit VIIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=25.36 E-value=19 Score=22.27 Aligned_cols=35 Identities=34% Similarity=0.513 Sum_probs=20.8
Q ss_pred CCCCccc----ccccchhHH--HHHHHHHHHHHHHHhhcCc
Q 032691 90 EGTGLPF----GLSNNLLGW--ILLGVFGLIWALYIPYASS 124 (135)
Q Consensus 90 eGTGl~l----Glsn~~Lgw--ILlgVf~liW~ly~~~~~~ 124 (135)
|.-|+|. |..|.+|-= ..+.+++++|++|.+|.-.
T Consensus 14 ~~~g~PVhLKGG~~D~~LYr~Tm~L~~~G~~~s~~~l~~a~ 54 (58)
T d1v54j_ 14 EDNGLPVHLKGGATDNILYRVTMTLCLGGTLYSLYCLGWAS 54 (58)
T ss_dssp CSSCCCTTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCceEEecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3345554 444554422 2345889999999888643
No 2
>d1iv0a_ c.55.3.8 (A:) Hypothetical protein, YqgF homologue {Thermus thermophilus [TaxId: 274]}
Probab=23.48 E-value=7.7 Score=24.86 Aligned_cols=13 Identities=38% Similarity=0.527 Sum_probs=10.2
Q ss_pred cccchhhhhhcccC
Q 032691 76 SSPAMALVDERMST 89 (135)
Q Consensus 76 a~PA~ALVDeRlst 89 (135)
..| .-++|||+++
T Consensus 85 ~lp-v~~~DErlTS 97 (98)
T d1iv0a_ 85 GVE-VELWDERFTT 97 (98)
T ss_dssp TCE-EEEECCSCCC
T ss_pred CCC-EEEEcCCCCC
Confidence 345 6799999987
No 3
>d1nu0a_ c.55.3.8 (A:) Hypothetical protein YqgF (RuvX) {Escherichia coli [TaxId: 562]}
Probab=14.92 E-value=15 Score=24.51 Aligned_cols=15 Identities=40% Similarity=0.443 Sum_probs=11.2
Q ss_pred cccchhhhhhcccCCC
Q 032691 76 SSPAMALVDERMSTEG 91 (135)
Q Consensus 76 a~PA~ALVDeRlsteG 91 (135)
..| .-+||||++|.=
T Consensus 88 ~i~-V~~~DEr~TS~e 102 (138)
T d1nu0a_ 88 GVE-VKLHDERLSTVE 102 (138)
T ss_dssp CCC-EEEEEEECCCCC
T ss_pred CCC-eEEEeccccHHH
Confidence 345 568999999954
No 4
>d1sh5a1 a.40.1.1 (A:8-127) Actin binding domain of plectin {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.38 E-value=38 Score=21.39 Aligned_cols=14 Identities=29% Similarity=0.850 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHhhc
Q 032691 109 GVFGLIWALYIPYA 122 (135)
Q Consensus 109 gVf~liW~ly~~~~ 122 (135)
-+.+|||++|.-|+
T Consensus 99 ~iL~llw~L~~~~~ 112 (120)
T d1sh5a1 99 LTLGLIWTIILHFQ 112 (120)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhc
Confidence 56789999998875
No 5
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=13.89 E-value=93 Score=16.46 Aligned_cols=22 Identities=32% Similarity=0.620 Sum_probs=16.9
Q ss_pred hhHHHHHHHHHHHHHHHHhhcC
Q 032691 102 LLGWILLGVFGLIWALYIPYAS 123 (135)
Q Consensus 102 ~LgwILlgVf~liW~ly~~~~~ 123 (135)
.||.|.+..-+|.++-|--|.+
T Consensus 2 vlgli~~tl~glf~aayqqykr 23 (27)
T d2e74g1 2 VLGLVFATLGGLFYAAYQQYKR 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTS
T ss_pred eeeehHHHHHHHHHHHHHHhcC
Confidence 4788888888888888877654
No 6
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=12.01 E-value=91 Score=17.62 Aligned_cols=26 Identities=27% Similarity=0.323 Sum_probs=17.9
Q ss_pred ccccccchhHHHHHHHHH--HHHHHHHh
Q 032691 95 PFGLSNNLLGWILLGVFG--LIWALYIP 120 (135)
Q Consensus 95 ~lGlsn~~LgwILlgVf~--liW~ly~~ 120 (135)
|.-+|-..|-|=|+-+|. .+++-||.
T Consensus 9 ~veLNrtsLy~GlLlifvl~vLFssYfF 36 (37)
T d2axtl1 9 PVELNRTSLYLGLLLILVLALLFSSYFF 36 (37)
T ss_dssp CBCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhc
Confidence 556777777777766664 57777774
No 7
>d1v54l_ f.23.6.1 (L:) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) {Cow (Bos taurus) [TaxId: 9913]}
Probab=10.62 E-value=1.4e+02 Score=17.40 Aligned_cols=25 Identities=32% Similarity=0.818 Sum_probs=16.9
Q ss_pred CCCCCcccccccchhHHHHHHHHHHHHH
Q 032691 89 TEGTGLPFGLSNNLLGWILLGVFGLIWA 116 (135)
Q Consensus 89 teGTGl~lGlsn~~LgwILlgVf~liW~ 116 (135)
+-|.-|||.+.|- |-|+.+|.+-+.
T Consensus 5 GPG~NLPFsv~Nk---~rLla~m~~~fG 29 (46)
T d1v54l_ 5 GPGKNIPFSVENK---WRLLAMMTLFFG 29 (46)
T ss_dssp STTTSSSSCCSSH---HHHHHHHHHHHH
T ss_pred CCCCCCCccchhH---HHHHHHHHHHHh
Confidence 3566689999885 666666665443
No 8
>d1dxxa1 a.40.1.1 (A:9-119) Dystrophin {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.92 E-value=74 Score=19.61 Aligned_cols=13 Identities=31% Similarity=0.979 Sum_probs=9.9
Q ss_pred HHHHHHHHHHhhc
Q 032691 110 VFGLIWALYIPYA 122 (135)
Q Consensus 110 Vf~liW~ly~~~~ 122 (135)
+.+|+|+++.-|+
T Consensus 99 iL~llw~l~~~yq 111 (111)
T d1dxxa1 99 TLGLIWNIILHWQ 111 (111)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC
Confidence 5578999987664
No 9
>d1aoaa2 a.40.1.1 (A:260-375) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.87 E-value=64 Score=19.68 Aligned_cols=9 Identities=11% Similarity=0.394 Sum_probs=7.1
Q ss_pred HHHHHHHHH
Q 032691 110 VFGLIWALY 118 (135)
Q Consensus 110 Vf~liW~ly 118 (135)
+.++||.||
T Consensus 107 iL~lv~~Lf 115 (116)
T d1aoaa2 107 NLAFVANLF 115 (116)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 458899887
No 10
>d1vhxa_ c.55.3.8 (A:) Hypothetical protein YrrK (RuvX) {Bacillus subtilis [TaxId: 1423]}
Probab=7.79 E-value=32 Score=22.90 Aligned_cols=14 Identities=43% Similarity=0.677 Sum_probs=10.6
Q ss_pred cccchhhhhhcccCC
Q 032691 76 SSPAMALVDERMSTE 90 (135)
Q Consensus 76 a~PA~ALVDeRlste 90 (135)
..| .-++|||+++.
T Consensus 89 ~i~-V~~~DEr~TS~ 102 (140)
T d1vhxa_ 89 NVP-VVLWDERLTTM 102 (140)
T ss_dssp CSC-EEEECCSSCHH
T ss_pred Ccc-EEEeecccCHH
Confidence 456 45999999984
Done!