Citrus Sinensis ID: 032692

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-----
MATASSAVQKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAKSAGLPWTVAKGQDTFTPISSVVRN
cccccHHHHHHHccccEEEEEcccHHHHHHHHcccccccccEEEccccccccccccEEEcccccccccEEEEEEEEccccccccHHHHHHcEEEEEEEccccHHHHHHHHHHccccccccccccccccccccccc
ccccccccccccccccEEEEEEccHHHHHHHHccccccccEEEEccccEEEcccccEEEccccccccEEEEEEEEEccccccccHHHHHHHHHEHEEHccccHHHHHHHHHHccccEEEEcccccccccccEEEc
MATASSAVQKLIQAGTKIVAVGRNYAAHAKELgnavpkepvlflkptssylgnggtievphpldslhHEVELAVVIGQkardvpettamDYVGGYAVALDMTAREIQSSaksaglpwtvakgqdtftpissvvrn
MATASSAVQKLIQAGTKIVAVGRNYAAHAKElgnavpkepVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAksaglpwtvakgqdtftpissvvrn
MATASSAVQKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAKSAGLPWTVAKGQDTFTPISSVVRN
*********KLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREI*******GLPWTVA***************
************QAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAKSAGLPWTVAKGQDTFTPISSVVR*
*********KLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAKSAGLPWTVAKGQDTFTPISSVVRN
****SSAVQKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAKSAGLPWTVAKGQDTFTPISSVVRN
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MATASSAVQKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAKSAGLPWTVAKGQDTFTPISSVVRN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query135 2.2.26 [Sep-21-2011]
Q86I22218 Acylpyruvase FAHD1, mitoc yes no 0.933 0.577 0.614 6e-41
Q5RDW0224 Acylpyruvase FAHD1, mitoc yes no 0.962 0.580 0.515 2e-34
Q6P587224 Acylpyruvase FAHD1, mitoc no no 0.962 0.580 0.515 2e-34
Q2HJ98221 Acylpyruvase FAHD1, mitoc yes no 0.962 0.588 0.507 4e-34
Q6AYQ8221 Acylpyruvase FAHD1, mitoc yes no 0.962 0.588 0.476 2e-32
Q8R0F8227 Acylpyruvase FAHD1, mitoc yes no 0.962 0.572 0.469 2e-32
O58377230 Uncharacterized protein P yes no 0.874 0.513 0.5 4e-32
Q9UYW0225 Uncharacterized protein P yes no 0.844 0.506 0.517 2e-31
P34673214 Uncharacterized protein Z yes no 0.844 0.532 0.561 2e-31
P53889 259 Uncharacterized mitochond yes no 0.888 0.463 0.417 1e-26
>sp|Q86I22|FAHD1_DICDI Acylpyruvase FAHD1, mitochondrial OS=Dictyostelium discoideum GN=fahd1 PE=3 SV=1 Back     alignment and function desciption
 Score =  165 bits (418), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 78/127 (61%), Positives = 93/127 (73%), Gaps = 1/127 (0%)

Query: 8   VQKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNG-GTIEVPHPLDSL 66
           + K  + G KIVAVGRNYA HAKELGN +P EP  FLKPTSSYL  G G IE+P     +
Sbjct: 1   MNKFWETGRKIVAVGRNYAQHAKELGNEIPSEPFFFLKPTSSYLLQGTGPIEIPLESSDI 60

Query: 67  HHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAKSAGLPWTVAKGQDTF 126
           HHEVEL +VIG+K RD+   +AMDYV GY +ALDMT+R+ QS AK+  LPWTV+KG DTF
Sbjct: 61  HHEVELGIVIGKKGRDIDLKSAMDYVSGYTLALDMTSRDQQSIAKAKSLPWTVSKGYDTF 120

Query: 127 TPISSVV 133
            PIS  +
Sbjct: 121 CPISGFI 127
Probable mitochondrial acylpyruvase which is able to hydrolyze acetylpyruvate and fumarylpyruvate in vitro.
Dictyostelium discoideum (taxid: 44689)
EC: 3EC: .EC: 7EC: .EC: 1EC: .EC: 5
>sp|Q5RDW0|FAHD1_PONAB Acylpyruvase FAHD1, mitochondrial OS=Pongo abelii GN=FAHD1 PE=2 SV=1 Back     alignment and function description
>sp|Q6P587|FAHD1_HUMAN Acylpyruvase FAHD1, mitochondrial OS=Homo sapiens GN=FAHD1 PE=1 SV=2 Back     alignment and function description
>sp|Q2HJ98|FAHD1_BOVIN Acylpyruvase FAHD1, mitochondrial OS=Bos taurus GN=FAHD1 PE=2 SV=1 Back     alignment and function description
>sp|Q6AYQ8|FAHD1_RAT Acylpyruvase FAHD1, mitochondrial OS=Rattus norvegicus GN=Fahd1 PE=2 SV=1 Back     alignment and function description
>sp|Q8R0F8|FAHD1_MOUSE Acylpyruvase FAHD1, mitochondrial OS=Mus musculus GN=Fahd1 PE=1 SV=2 Back     alignment and function description
>sp|O58377|Y643_PYRHO Uncharacterized protein PH0643 OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=PH0643 PE=3 SV=1 Back     alignment and function description
>sp|Q9UYW0|Y1397_PYRAB Uncharacterized protein PYRAB13970 OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=PYRAB13970 PE=3 SV=1 Back     alignment and function description
>sp|P34673|YO23_CAEEL Uncharacterized protein ZK688.3 OS=Caenorhabditis elegans GN=ZK688.3 PE=3 SV=1 Back     alignment and function description
>sp|P53889|FMP41_YEAST Uncharacterized mitochondrial hydrolase FMP41 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FMP41 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query135
255551813226 fumarylacetoacetate hydrolase, putative 0.985 0.588 0.902 3e-64
225431770226 PREDICTED: acylpyruvase FAHD1, mitochond 0.985 0.588 0.909 1e-63
224110404226 predicted protein [Populus trichocarpa] 0.985 0.588 0.864 2e-62
7485073 367 hypothetical protein - Arabidopsis thali 0.962 0.354 0.838 7e-62
16209656223 AT4g15940/dl4011w [Arabidopsis thaliana] 0.962 0.582 0.838 5e-61
15234757222 fumarylacetoacetate hydrolase-like prote 0.962 0.585 0.838 6e-61
297804628222 AT4g15940/dl4011w [Arabidopsis lyrata su 0.962 0.585 0.815 7e-60
449432876220 PREDICTED: acylpyruvase FAHD1, mitochond 0.955 0.586 0.829 5e-57
145332597170 fumarylacetoacetate hydrolase [Arabidops 0.962 0.764 0.776 2e-55
388521719224 unknown [Lotus japonicus] 0.962 0.580 0.784 2e-55
>gi|255551813|ref|XP_002516952.1| fumarylacetoacetate hydrolase, putative [Ricinus communis] gi|223544040|gb|EEF45566.1| fumarylacetoacetate hydrolase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  249 bits (635), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 120/133 (90%), Positives = 128/133 (96%)

Query: 1   MATASSAVQKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVP 60
           MATA S VQKL+Q GTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYL NGGTIE+P
Sbjct: 1   MATACSGVQKLLQVGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLENGGTIEIP 60

Query: 61  HPLDSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAKSAGLPWTVA 120
           HPL+SL HEVELAVVIGQKARDVP+TTAMDYVGGYA+ALDMTAREIQ+SAKSAGLPW+VA
Sbjct: 61  HPLESLDHEVELAVVIGQKARDVPQTTAMDYVGGYALALDMTAREIQASAKSAGLPWSVA 120

Query: 121 KGQDTFTPISSVV 133
           KGQDTFTPISSV+
Sbjct: 121 KGQDTFTPISSVL 133

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225431770|ref|XP_002270782.1| PREDICTED: acylpyruvase FAHD1, mitochondrial [Vitis vinifera] gi|296083339|emb|CBI22975.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224110404|ref|XP_002315509.1| predicted protein [Populus trichocarpa] gi|118488589|gb|ABK96107.1| unknown [Populus trichocarpa] gi|222864549|gb|EEF01680.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|7485073|pir||C71425 hypothetical protein - Arabidopsis thaliana Back     alignment and taxonomy information
>gi|16209656|gb|AAL14388.1| AT4g15940/dl4011w [Arabidopsis thaliana] gi|21593651|gb|AAM65618.1| isomerase like protein [Arabidopsis thaliana] gi|58331823|gb|AAW70409.1| At4g15940 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|15234757|ref|NP_193329.1| fumarylacetoacetate hydrolase-like protein [Arabidopsis thaliana] gi|5302783|emb|CAB46032.1| isomerase like protein [Arabidopsis thaliana] gi|7268342|emb|CAB78636.1| isomerase like protein [Arabidopsis thaliana] gi|332658268|gb|AEE83668.1| fumarylacetoacetate hydrolase-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297804628|ref|XP_002870198.1| AT4g15940/dl4011w [Arabidopsis lyrata subsp. lyrata] gi|297316034|gb|EFH46457.1| AT4g15940/dl4011w [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|449432876|ref|XP_004134224.1| PREDICTED: acylpyruvase FAHD1, mitochondrial-like [Cucumis sativus] gi|449503828|ref|XP_004162197.1| PREDICTED: acylpyruvase FAHD1, mitochondrial-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|145332597|ref|NP_001078164.1| fumarylacetoacetate hydrolase [Arabidopsis thaliana] gi|332642333|gb|AEE75854.1| fumarylacetoacetate hydrolase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|388521719|gb|AFK48921.1| unknown [Lotus japonicus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query135
TAIR|locus:2129815222 AT4G15940 [Arabidopsis thalian 0.962 0.585 0.838 7.5e-57
TAIR|locus:2089373224 AT3G16700 [Arabidopsis thalian 0.962 0.580 0.776 9.2e-52
DICTYBASE|DDB_G0275071218 fahd1 "Fumarylacetoacetate (FA 0.933 0.577 0.614 1.9e-37
ZFIN|ZDB-GENE-050522-448219 fahd1 "fumarylacetoacetate hyd 0.933 0.575 0.531 2.9e-32
UNIPROTKB|Q6P587224 FAHD1 "Acylpyruvase FAHD1, mit 0.962 0.580 0.515 2.6e-31
UNIPROTKB|Q5RDW0224 FAHD1 "Acylpyruvase FAHD1, mit 0.962 0.580 0.515 2.6e-31
UNIPROTKB|Q2HJ98221 FAHD1 "Acylpyruvase FAHD1, mit 0.962 0.588 0.507 4.2e-31
TIGR_CMR|GSU_0585218 GSU_0585 "fumarylacetoacetate 0.866 0.536 0.495 1.3e-29
RGD|1304560221 Fahd1 "fumarylacetoacetate hyd 0.881 0.538 0.521 1.3e-29
UNIPROTKB|Q6AYQ8221 Fahd1 "Acylpyruvase FAHD1, mit 0.881 0.538 0.521 1.3e-29
TAIR|locus:2129815 AT4G15940 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 585 (211.0 bits), Expect = 7.5e-57, P = 7.5e-57
 Identities = 109/130 (83%), Positives = 124/130 (95%)

Query:     4 ASSAVQKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPL 63
             A+S +Q++ + GTKIV VGRNYAAHAKELGNAVPKEPV+FLKPTSSYL NGGTIE+PHPL
Sbjct:     2 ATSMIQRMFKQGTKIVCVGRNYAAHAKELGNAVPKEPVIFLKPTSSYLENGGTIEIPHPL 61

Query:    64 DSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAKSAGLPWTVAKGQ 123
             DSLHHEVELA+VIGQKARDVPE+ AMDY+GGYAVALDMTARE+Q+SAK++GLPWTVAKGQ
Sbjct:    62 DSLHHEVELALVIGQKARDVPESIAMDYIGGYAVALDMTARELQASAKASGLPWTVAKGQ 121

Query:   124 DTFTPISSVV 133
             DTFTPISSV+
Sbjct:   122 DTFTPISSVL 131
GO:0003824 "catalytic activity" evidence=IEA;ISS
GO:0005739 "mitochondrion" evidence=ISM;IDA
GO:0008152 "metabolic process" evidence=IEA;ISS
GO:0005507 "copper ion binding" evidence=IDA
GO:0006635 "fatty acid beta-oxidation" evidence=RCA
TAIR|locus:2089373 AT3G16700 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0275071 fahd1 "Fumarylacetoacetate (FAA) hydrolase domain-containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050522-448 fahd1 "fumarylacetoacetate hydrolase domain containing 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q6P587 FAHD1 "Acylpyruvase FAHD1, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q5RDW0 FAHD1 "Acylpyruvase FAHD1, mitochondrial" [Pongo abelii (taxid:9601)] Back     alignment and assigned GO terms
UNIPROTKB|Q2HJ98 FAHD1 "Acylpyruvase FAHD1, mitochondrial" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_0585 GSU_0585 "fumarylacetoacetate hydrolase family protein" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
RGD|1304560 Fahd1 "fumarylacetoacetate hydrolase domain containing 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q6AYQ8 Fahd1 "Acylpyruvase FAHD1, mitochondrial" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query135
COG0179266 COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxo 2e-47
pfam01557207 pfam01557, FAA_hydrolase, Fumarylacetoacetate (FAA 5e-38
PRK10691219 PRK10691, PRK10691, hypothetical protein; Provisio 3e-35
TIGR02303245 TIGR02303, HpaG-C-term, 4-hydroxyphenylacetate deg 4e-28
PRK15203429 PRK15203, PRK15203, 4-hydroxyphenylacetate degrada 2e-19
PRK12764 500 PRK12764, PRK12764, hypothetical protein; Provisio 7e-15
TIGR02305205 TIGR02305, HpaG-N-term, 4-hydroxyphenylacetate deg 3e-12
PRK15203 429 PRK15203, PRK15203, 4-hydroxyphenylacetate degrada 6e-07
>gnl|CDD|223257 COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information 
 Score =  153 bits (389), Expect = 2e-47
 Identities = 57/116 (49%), Positives = 76/116 (65%), Gaps = 4/116 (3%)

Query: 17  KIVAVGRNYAAHAKELGNA--VPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAV 74
           KIV VGRNYA HA+E+G    +P+EPV FLKP ++ +G    I +P     L +E ELAV
Sbjct: 61  KIVCVGRNYADHAEEMGKDRDIPEEPVFFLKPPTAVIGPNDPIPLPPGSKGLDYEGELAV 120

Query: 75  VIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAKSAGLPWTVAKGQDTFTPIS 130
           VIG++ +DV    A+DY+ GY +  D+TAR++Q   K  G PWT AKG DTF P+ 
Sbjct: 121 VIGKRGKDVSVEDALDYIAGYTIGNDVTARDLQMEEK--GRPWTRAKGFDTFAPVG 174

Length = 266
>gnl|CDD|216570 pfam01557, FAA_hydrolase, Fumarylacetoacetate (FAA) hydrolase family Back     alignment and domain information
>gnl|CDD|182650 PRK10691, PRK10691, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|131356 TIGR02303, HpaG-C-term, 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, C-terminal subunit Back     alignment and domain information
>gnl|CDD|185125 PRK15203, PRK15203, 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; Provisional Back     alignment and domain information
>gnl|CDD|237193 PRK12764, PRK12764, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|131358 TIGR02305, HpaG-N-term, 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, N-terminal subunit Back     alignment and domain information
>gnl|CDD|185125 PRK15203, PRK15203, 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 135
COG0179266 MhpD 2-keto-4-pentenoate hydratase/2-oxohepta-3-en 100.0
KOG1535217 consensus Predicted fumarylacetoacetate hydralase 100.0
TIGR02303245 HpaG-C-term 4-hydroxyphenylacetate degradation bif 100.0
PRK10691219 hypothetical protein; Provisional 100.0
PRK15203 429 4-hydroxyphenylacetate degradation bifunctional is 100.0
PRK15203429 4-hydroxyphenylacetate degradation bifunctional is 100.0
PRK12764 500 hypothetical protein; Provisional 100.0
TIGR02305205 HpaG-N-term 4-hydroxyphenylacetate degradation bif 100.0
PLN02856 424 fumarylacetoacetase 99.97
TIGR01266 415 fum_ac_acetase fumarylacetoacetase. This enzyme ca 99.96
PF01557218 FAA_hydrolase: Fumarylacetoacetate (FAA) hydrolase 99.96
KOG2843 420 consensus Fumarylacetoacetase [Carbohydrate transp 99.56
COG3970 379 Fumarylacetoacetate (FAA) hydrolase family protein 98.98
TIGR03220255 catechol_dmpE 2-oxopent-4-enoate hydratase. Member 98.5
TIGR02312267 HpaH 2-oxo-hepta-3-ene-1,7-dioic acid hydratase. T 97.85
PRK11342262 mhpD 2-keto-4-pentenoate hydratase; Provisional 97.51
COG3802 333 GguC Uncharacterized protein conserved in bacteria 96.61
COG3971264 2-keto-4-pentenoate hydratase [Secondary metabolit 93.12
TIGR03218263 catechol_dmpH 4-oxalocrotonate decarboxylase. Memb 89.67
>COG0179 MhpD 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information 
Probab=100.00  E-value=9.4e-46  Score=292.66  Aligned_cols=125  Identities=45%  Similarity=0.783  Sum_probs=117.2

Q ss_pred             hhcccCCCcEEEEccCcHHHHHHhCCC--CCCCCEEEecCCCCccCCCCcEeecCCCCCcccceEEEEEECCCCCCCCcc
Q 032692            9 QKLIQAGTKIVAVGRNYAAHAKELGNA--VPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPET   86 (135)
Q Consensus         9 ~~~l~~~~ki~~~g~NY~~h~~e~~~~--~p~~P~~F~K~~~al~g~~~~i~~P~~~~~ld~E~ELavVIGk~~~~i~~~   86 (135)
                      ..++.+++||||+|+||++|++|++..  .|+.|++|+|+++++++++++|.+|+.+..+|||+||||||||++++|+++
T Consensus        53 ~~~~~~~~ki~cvG~NY~~Ha~E~~~~~~~p~~P~~F~K~~~a~~~~~~~i~~P~~s~~~dyE~ELavvIGk~~~~v~~e  132 (266)
T COG0179          53 LAPLPPPGKIVCVGRNYADHAEEMGKDRDIPEEPVFFLKPPTAVIGPNDPIPLPPGSKGLDYEGELAVVIGKRGKDVSVE  132 (266)
T ss_pred             ccCCCCCCcEEEEechHHHHHHHhccCCCCCCCCeeeccCcccccCCCCceECCCCCCCcceeEEEEEEECCcCCCCCHH
Confidence            445556789999999999999999985  899999999999999999999999999999999999999999999999999


Q ss_pred             cHhhhhceEeeEeecchHHHHHhhhhcCCCcccccCCCCCCccCcceeC
Q 032692           87 TAMDYVGGYAVALDMTAREIQSSAKSAGLPWTVAKGQDTFTPISSVVRN  135 (135)
Q Consensus        87 ~A~~~I~Gytv~nD~T~Rd~q~~~~~~g~~w~~~K~~d~f~plGP~i~~  135 (135)
                      +|++||+|||++||+|+||+|..  +.++||+++|+||+|||+||||++
T Consensus       133 ~A~d~I~GYti~nD~T~Rd~Q~~--~~~~~w~~aK~~d~~~Pigp~iv~  179 (266)
T COG0179         133 DALDYIAGYTIGNDVTARDLQME--EKGRPWTRAKGFDTFAPVGPWIVT  179 (266)
T ss_pred             HHHhhheEEeeeeecchhcchhh--hhcCCcccccccCCCCCceeEEec
Confidence            99999999999999999999965  457899999999999999999974

>KOG1535 consensus Predicted fumarylacetoacetate hydralase [General function prediction only] Back     alignment and domain information
>TIGR02303 HpaG-C-term 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, C-terminal subunit Back     alignment and domain information
>PRK10691 hypothetical protein; Provisional Back     alignment and domain information
>PRK15203 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; Provisional Back     alignment and domain information
>PRK15203 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; Provisional Back     alignment and domain information
>PRK12764 hypothetical protein; Provisional Back     alignment and domain information
>TIGR02305 HpaG-N-term 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, N-terminal subunit Back     alignment and domain information
>PLN02856 fumarylacetoacetase Back     alignment and domain information
>TIGR01266 fum_ac_acetase fumarylacetoacetase Back     alignment and domain information
>PF01557 FAA_hydrolase: Fumarylacetoacetate (FAA) hydrolase family Mutations in Swiss:P16930 cause inherited tyrosinemia type I Back     alignment and domain information
>KOG2843 consensus Fumarylacetoacetase [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG3970 Fumarylacetoacetate (FAA) hydrolase family protein [General function prediction only] Back     alignment and domain information
>TIGR03220 catechol_dmpE 2-oxopent-4-enoate hydratase Back     alignment and domain information
>TIGR02312 HpaH 2-oxo-hepta-3-ene-1,7-dioic acid hydratase Back     alignment and domain information
>PRK11342 mhpD 2-keto-4-pentenoate hydratase; Provisional Back     alignment and domain information
>COG3802 GguC Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>COG3971 2-keto-4-pentenoate hydratase [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>TIGR03218 catechol_dmpH 4-oxalocrotonate decarboxylase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query135
1saw_A225 X-Ray Structure Of Homo Sapiens Protein Flj36880 Le 2e-35
1nkq_A 259 Crystal Structure Of Yeast Ynq8, A Fumarylacetoacet 1e-27
1nr9_A223 Crystal Structure Of Escherichia Coli 1262 (Apc5008 8e-26
3rr6_A265 Structure Of A Putative Uncharacterized Protein Fro 3e-24
3v77_A224 Crystal Structure Of A Putative Fumarylacetoacetate 1e-23
3s52_A221 Crystal Structure Of A Putative Fumarylacetoacetate 2e-23
2dfu_A264 Crystal Structure Of The 2-Hydroxyhepta-2,4-Diene-1 1e-20
1wzo_A246 Crystal Structure Of The Hpce From Thermus Thermoph 6e-20
3qdf_A268 Crystal Structure Of 2-Hydroxyhepta-2,4-Diene-1,7-D 2e-19
1i7o_A429 Crystal Structure Of Hpce Length = 429 5e-18
4dbf_A288 Crystal Structures Of Cg1458 Length = 288 2e-13
3r6o_A 329 Crystal Structure Of A Probable 2-Hydroxyhepta-2,4- 1e-10
>pdb|1SAW|A Chain A, X-Ray Structure Of Homo Sapiens Protein Flj36880 Length = 225 Back     alignment and structure 
Iteration: 1

 Score =  144 bits (362), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 67/130 (51%), Positives = 88/130 (67%)
Query: 4   ASSAVQKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPL 63
           AS  + +  + G  IV VGRNYA H +E+ +AV  EPVLFLKP+++Y   G  I +P   
Sbjct: 7   ASRPLSRFWEWGKNIVCVGRNYADHVREMRSAVLSEPVLFLKPSTAYAPEGSPILMPAYT 66
Query: 64  DSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAKSAGLPWTVAKGQ 123
            +LHHE+EL VV+G++ R VPE  AMDYVGGYA+ LDMTAR++Q   K  GLPWT+AK  
Sbjct: 67  RNLHHELELGVVMGKRCRAVPEAAAMDYVGGYALCLDMTARDVQDECKKKGLPWTLAKSF 126
Query: 124 DTFTPISSVV 133
               P+S+ V
Sbjct: 127 TASCPVSAFV 136
>pdb|1NKQ|A Chain A, Crystal Structure Of Yeast Ynq8, A Fumarylacetoacetate Hydrolase Family Protein Length = 259 Back     alignment and structure
>pdb|1NR9|A Chain A, Crystal Structure Of Escherichia Coli 1262 (Apc5008), Putative Isomerase Length = 223 Back     alignment and structure
>pdb|3RR6|A Chain A, Structure Of A Putative Uncharacterized Protein From Mycobacterium Abscessus Atcc 19977 DSM 44196 Length = 265 Back     alignment and structure
>pdb|3V77|A Chain A, Crystal Structure Of A Putative Fumarylacetoacetate IsomeraseHYDROLASE FROM OLEISPIRA ANTARCTICA Length = 224 Back     alignment and structure
>pdb|3S52|A Chain A, Crystal Structure Of A Putative Fumarylacetoacetate Hydrolase Family Protein From Yersinia Pestis Co92 Length = 221 Back     alignment and structure
>pdb|2DFU|A Chain A, Crystal Structure Of The 2-Hydroxyhepta-2,4-Diene-1,7-Dioate Isomerase From Thermus Thermophilus Hb8 Length = 264 Back     alignment and structure
>pdb|1WZO|A Chain A, Crystal Structure Of The Hpce From Thermus Thermophilus Hb8 Length = 246 Back     alignment and structure
>pdb|3QDF|A Chain A, Crystal Structure Of 2-Hydroxyhepta-2,4-Diene-1,7-Dioate Isomerase From Mycobacterium Marinum Length = 268 Back     alignment and structure
>pdb|1I7O|A Chain A, Crystal Structure Of Hpce Length = 429 Back     alignment and structure
>pdb|4DBF|A Chain A, Crystal Structures Of Cg1458 Length = 288 Back     alignment and structure
>pdb|3R6O|A Chain A, Crystal Structure Of A Probable 2-Hydroxyhepta-2,4-Diene-1, 7- Dioateisomerase From Mycobacterium Abscessus Length = 329 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query135
1saw_A225 Hypothetical protein FLJ36880; structural genomics 5e-71
3l53_A224 Putative fumarylacetoacetate isomerase/hydrolase; 3e-69
3s52_A221 Putative fumarylacetoacetate hydrolase family Pro; 3e-68
1nkq_A 259 Hypothetical 28.8 kDa protein in PSD1-SKO1 interge 5e-61
1wzo_A246 HPCE; structural genomics, riken structural genomi 1e-53
3rr6_A265 Putative uncharacterized protein; structural genom 2e-52
1gtt_A429 4-hydroxyphenylacetate degradation bifunctional is 5e-51
1gtt_A 429 4-hydroxyphenylacetate degradation bifunctional is 1e-44
2dfu_A264 Probable 2-hydroxyhepta-2,4-diene-1,7-dioate ISOM; 3e-47
3r6o_A 329 2-hydroxyhepta-2,4-diene-1, 7-dioateisomerase; ssg 2e-40
2q18_X293 2-keto-3-deoxy-D-arabinonate dehydratase; FAH-fami 4e-30
3lzk_A 359 Fumarylacetoacetate hydrolase family protein; stru 4e-28
1hyo_A 421 Fumarylacetoacetate hydrolase; beta-sandwich roll; 7e-13
>1saw_A Hypothetical protein FLJ36880; structural genomics, fumarylacetoacetatehydrolase family, unknown function; 2.20A {Homo sapiens} SCOP: d.177.1.1 Length = 225 Back     alignment and structure
 Score =  211 bits (539), Expect = 5e-71
 Identities = 67/133 (50%), Positives = 89/133 (66%)

Query: 1   MATASSAVQKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVP 60
           +  AS  + +  + G  IV VGRNYA H +E+ +AV  EPVLFLKP+++Y   G  I +P
Sbjct: 4   IMAASRPLSRFWEWGKNIVCVGRNYADHVREMRSAVLSEPVLFLKPSTAYAPEGSPILMP 63

Query: 61  HPLDSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAKSAGLPWTVA 120
               +LHHE+EL VV+G++ R VPE  AMDYVGGYA+ LDMTAR++Q   K  GLPWT+A
Sbjct: 64  AYTRNLHHELELGVVMGKRCRAVPEAAAMDYVGGYALCLDMTARDVQDECKKKGLPWTLA 123

Query: 121 KGQDTFTPISSVV 133
           K      P+S+ V
Sbjct: 124 KSFTASCPVSAFV 136
>3s52_A Putative fumarylacetoacetate hydrolase family Pro; csgid, structural genomics, center for structural genomics O infectious diseases; 2.01A {Yersinia pestis} PDB: 1nr9_A Length = 221 Back     alignment and structure
>1nkq_A Hypothetical 28.8 kDa protein in PSD1-SKO1 intergenic region; dimer, PSI, protein structure initiative; 2.20A {Saccharomyces cerevisiae} SCOP: d.177.1.1 Length = 259 Back     alignment and structure
>1wzo_A HPCE; structural genomics, riken structural genomics/proteom initiative, RSGI, NPPSFA, isomerase; 1.90A {Thermus thermophilus} Length = 246 Back     alignment and structure
>3rr6_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.58A {Mycobacterium abscessus} PDB: 3qdf_A Length = 265 Back     alignment and structure
>1gtt_A 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; lyase, bifunctional enzyme, multifunctional enzyme decarboxylase; 1.7A {Escherichia coli} SCOP: d.177.1.1 d.177.1.1 PDB: 1i7o_A Length = 429 Back     alignment and structure
>1gtt_A 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; lyase, bifunctional enzyme, multifunctional enzyme decarboxylase; 1.7A {Escherichia coli} SCOP: d.177.1.1 d.177.1.1 PDB: 1i7o_A Length = 429 Back     alignment and structure
>2dfu_A Probable 2-hydroxyhepta-2,4-diene-1,7-dioate ISOM; 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase, structural GE NPPSFA; 2.20A {Thermus thermophilus} Length = 264 Back     alignment and structure
>3r6o_A 2-hydroxyhepta-2,4-diene-1, 7-dioateisomerase; ssgcid, struc genomics, seattle structural genomics center for infectious isomerase; 1.95A {Mycobacterium abscessus} Length = 329 Back     alignment and structure
>2q18_X 2-keto-3-deoxy-D-arabinonate dehydratase; FAH-family fold, lyase; 2.10A {Sulfolobus solfataricus} PDB: 2q19_X 2q1a_X 2q1c_X 2q1d_X 3bqb_A Length = 293 Back     alignment and structure
>3lzk_A Fumarylacetoacetate hydrolase family protein; structural genomics, PSI-2, protein structure initiative; 1.90A {Sinorhizobium meliloti} Length = 359 Back     alignment and structure
>1hyo_A Fumarylacetoacetate hydrolase; beta-sandwich roll; HET: HBU; 1.30A {Mus musculus} SCOP: b.34.8.1 d.177.1.1 PDB: 1qcn_A 2hzy_A* 1qco_A 1qqj_A Length = 421 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query135
3l53_A224 Putative fumarylacetoacetate isomerase/hydrolase; 100.0
4dbf_A288 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase; oxa 100.0
3s52_A221 Putative fumarylacetoacetate hydrolase family Pro; 100.0
3rr6_A265 Putative uncharacterized protein; structural genom 100.0
3r6o_A 329 2-hydroxyhepta-2,4-diene-1, 7-dioateisomerase; ssg 100.0
1saw_A225 Hypothetical protein FLJ36880; structural genomics 100.0
1nkq_A 259 Hypothetical 28.8 kDa protein in PSD1-SKO1 interge 100.0
3lzk_A 359 Fumarylacetoacetate hydrolase family protein; stru 100.0
2dfu_A264 Probable 2-hydroxyhepta-2,4-diene-1,7-dioate ISOM; 100.0
1wzo_A246 HPCE; structural genomics, riken structural genomi 100.0
1gtt_A 429 4-hydroxyphenylacetate degradation bifunctional is 100.0
1gtt_A429 4-hydroxyphenylacetate degradation bifunctional is 100.0
2q18_X293 2-keto-3-deoxy-D-arabinonate dehydratase; FAH-fami 100.0
1hyo_A 421 Fumarylacetoacetate hydrolase; beta-sandwich roll; 99.96
2eb4_A267 2-OXO-HEPT-3-ENE-1,7-dioate hydratase; lyase; 1.60 99.91
2wqt_A270 2-keto-4-pentenoate hydratase; lyase, dodecahedral 99.91
>4dbf_A 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase; oxaloacetate decarboxylase; 1.90A {Corynebacterium glutamicum} PDB: 4dbh_A Back     alignment and structure
>3s52_A Putative fumarylacetoacetate hydrolase family Pro; csgid, structural genomics, center for structural genomics O infectious diseases; 2.01A {Yersinia pestis} SCOP: d.177.1.1 PDB: 1nr9_A Back     alignment and structure
>3rr6_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.58A {Mycobacterium abscessus} PDB: 3qdf_A Back     alignment and structure
>3r6o_A 2-hydroxyhepta-2,4-diene-1, 7-dioateisomerase; ssgcid, struc genomics, seattle structural genomics center for infectious isomerase; 1.95A {Mycobacterium abscessus} Back     alignment and structure
>1saw_A Hypothetical protein FLJ36880; structural genomics, fumarylacetoacetatehydrolase family, unknown function; 2.20A {Homo sapiens} SCOP: d.177.1.1 Back     alignment and structure
>1nkq_A Hypothetical 28.8 kDa protein in PSD1-SKO1 intergenic region; dimer, PSI, protein structure initiative; 2.20A {Saccharomyces cerevisiae} SCOP: d.177.1.1 Back     alignment and structure
>3lzk_A Fumarylacetoacetate hydrolase family protein; structural genomics, PSI-2, protein structure initiative; 1.90A {Sinorhizobium meliloti} Back     alignment and structure
>2dfu_A Probable 2-hydroxyhepta-2,4-diene-1,7-dioate ISOM; 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase, structural GE NPPSFA; 2.20A {Thermus thermophilus} Back     alignment and structure
>1wzo_A HPCE; structural genomics, riken structural genomics/proteom initiative, RSGI, NPPSFA, isomerase; 1.90A {Thermus thermophilus} Back     alignment and structure
>1gtt_A 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; lyase, bifunctional enzyme, multifunctional enzyme decarboxylase; 1.7A {Escherichia coli} SCOP: d.177.1.1 d.177.1.1 PDB: 1i7o_A Back     alignment and structure
>1gtt_A 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; lyase, bifunctional enzyme, multifunctional enzyme decarboxylase; 1.7A {Escherichia coli} SCOP: d.177.1.1 d.177.1.1 PDB: 1i7o_A Back     alignment and structure
>2q18_X 2-keto-3-deoxy-D-arabinonate dehydratase; FAH-family fold, lyase; 2.10A {Sulfolobus solfataricus} PDB: 2q19_X 2q1a_X 2q1c_X 2q1d_X 3bqb_A Back     alignment and structure
>1hyo_A Fumarylacetoacetate hydrolase; beta-sandwich roll; HET: HBU; 1.30A {Mus musculus} SCOP: b.34.8.1 d.177.1.1 PDB: 1qcn_A 2hzy_A* 1qco_A 1qqj_A Back     alignment and structure
>2eb4_A 2-OXO-HEPT-3-ENE-1,7-dioate hydratase; lyase; 1.60A {Escherichia coli} PDB: 2eb5_A 2eb6_A Back     alignment and structure
>2wqt_A 2-keto-4-pentenoate hydratase; lyase, dodecahedral form, aromatic hydrocarbons catabolism; 2.80A {Escherichia coli} PDB: 1sv6_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 135
d1sawa_217 d.177.1.1 (A:) FAHD1 (Flj36880, YISKL) {Human (Hom 5e-35
d1nkqa_ 257 d.177.1.1 (A:) Hypothetical protein Ynl168c {Baker 3e-29
d1nr9a_221 d.177.1.1 (A:) Putative isomerase YcgM {Escherichi 1e-26
d1gtta2216 d.177.1.1 (A:214-429) 4-hydroxyphenylacetate degra 6e-23
d1hyoa2 298 d.177.1.1 (A:119-416) Fumarylacetoacetate hydrolas 6e-19
d1gtta1213 d.177.1.1 (A:1-213) 4-hydroxyphenylacetate degrada 2e-14
>d1sawa_ d.177.1.1 (A:) FAHD1 (Flj36880, YISKL) {Human (Homo sapiens) [TaxId: 9606]} Length = 217 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: FAH
superfamily: FAH
family: FAH
domain: FAHD1 (Flj36880, YISKL)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  118 bits (296), Expect = 5e-35
 Identities = 65/126 (51%), Positives = 86/126 (68%)

Query: 8   VQKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLH 67
           + +  + G  IV VGRNYA H +E+ +AV  EPVLFLKP+++Y   G  I +P    +LH
Sbjct: 3   LSRFWEWGKNIVCVGRNYADHVREMRSAVLSEPVLFLKPSTAYAPEGSPILMPAYTRNLH 62

Query: 68  HEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAKSAGLPWTVAKGQDTFT 127
           HE+EL VV+G++ R VPE  AMDYVGGYA+ LDMTAR++Q   K  GLPWT+AK      
Sbjct: 63  HELELGVVMGKRCRAVPEAAAMDYVGGYALCLDMTARDVQDECKKKGLPWTLAKSFTASC 122

Query: 128 PISSVV 133
           P+S+ V
Sbjct: 123 PVSAFV 128
>d1nkqa_ d.177.1.1 (A:) Hypothetical protein Ynl168c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 257 Back     information, alignment and structure
>d1nr9a_ d.177.1.1 (A:) Putative isomerase YcgM {Escherichia coli [TaxId: 562]} Length = 221 Back     information, alignment and structure
>d1gtta2 d.177.1.1 (A:214-429) 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase HpcE {Escherichia coli [TaxId: 562]} Length = 216 Back     information, alignment and structure
>d1hyoa2 d.177.1.1 (A:119-416) Fumarylacetoacetate hydrolase, FAH, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 298 Back     information, alignment and structure
>d1gtta1 d.177.1.1 (A:1-213) 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase HpcE {Escherichia coli [TaxId: 562]} Length = 213 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query135
d1nr9a_221 Putative isomerase YcgM {Escherichia coli [TaxId: 100.0
d1sawa_217 FAHD1 (Flj36880, YISKL) {Human (Homo sapiens) [Tax 100.0
d1nkqa_ 257 Hypothetical protein Ynl168c {Baker's yeast (Sacch 100.0
d1gtta1213 4-hydroxyphenylacetate degradation bifunctional is 100.0
d1gtta2216 4-hydroxyphenylacetate degradation bifunctional is 100.0
d1hyoa2 298 Fumarylacetoacetate hydrolase, FAH, C-terminal dom 99.97
d1sv6a_261 2-keto-4-pentenoate hydratase MhpD {Escherichia co 97.1
>d1nr9a_ d.177.1.1 (A:) Putative isomerase YcgM {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FAH
superfamily: FAH
family: FAH
domain: Putative isomerase YcgM
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.3e-47  Score=291.33  Aligned_cols=125  Identities=44%  Similarity=0.747  Sum_probs=109.6

Q ss_pred             hcccCC-CcEEEEccCcHHHHHHhCCCCCCCCEEEecCCCCccCCCCcEeecCCCCCcccceEEEEEECCCCCCCCcccH
Q 032692           10 KLIQAG-TKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTA   88 (135)
Q Consensus        10 ~~l~~~-~ki~~~g~NY~~h~~e~~~~~p~~P~~F~K~~~al~g~~~~i~~P~~~~~ld~E~ELavVIGk~~~~i~~~~A   88 (135)
                      .++..| +||+|+|+||++|++|++.+.|+.|++|+|+++++++++++|.+|..+..+|||+||+|||||++++|+++||
T Consensus        11 ~~~~~Pv~kI~cvg~NY~~H~~E~~~~~p~~P~~F~K~~~al~g~~~~I~~p~~~~~ld~E~EL~vvigk~~~~i~~~~A   90 (221)
T d1nr9a_          11 ALLDYPVSKVVCVGSNYAKHIKEMGSAVPEEPVLFIKPETALCDLRQPLAIPSDFGSVHHEVELAVLIGATLRQATEEHV   90 (221)
T ss_dssp             CBCSCCCCCEEEESCCBC----------CCCCCEEEECGGGEEETTSCBCCCSSSSCEEECEEEEEEECSCBSSCCHHHH
T ss_pred             CcccCCCccEEEEeccHHHHHHHHCCCCCCCCEEEEECchhhcCCCcccccccccceeeecccEEEEeccccceeecccc
Confidence            344444 9999999999999999999999999999999999999999999999988999999999999999999999999


Q ss_pred             hhhhceEeeEeecchHHHHHhhhhcCCCcccccCCCCCCccCccee
Q 032692           89 MDYVGGYAVALDMTAREIQSSAKSAGLPWTVAKGQDTFTPISSVVR  134 (135)
Q Consensus        89 ~~~I~Gytv~nD~T~Rd~q~~~~~~g~~w~~~K~~d~f~plGP~i~  134 (135)
                      ++||+|||++||+|+||+|.++++.+.+|.++|+||+|||+||||+
T Consensus        91 ~~~I~Gyti~ND~T~Rd~q~~~~~~~~~~~~~K~~d~~~p~Gp~i~  136 (221)
T d1nr9a_          91 RKAIAGYGVALDLTLRDVQGKMKKAGQPWEKAKAFDNSCPLSGFIP  136 (221)
T ss_dssp             HHHEEEEEEEECCBCHHHHHHHHHHTCCSHHHHSSTTCEEECCBEE
T ss_pred             chhhheeeeeeeeeeehhhhhhhhcccccccCcccCCccccceeee
Confidence            9999999999999999999998888999999999999999999986
>d1sawa_ d.177.1.1 (A:) FAHD1 (Flj36880, YISKL) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nkqa_ d.177.1.1 (A:) Hypothetical protein Ynl168c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1gtta1 d.177.1.1 (A:1-213) 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase HpcE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gtta2 d.177.1.1 (A:214-429) 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase HpcE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1hyoa2 d.177.1.1 (A:119-416) Fumarylacetoacetate hydrolase, FAH, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1sv6a_ d.177.1.1 (A:) 2-keto-4-pentenoate hydratase MhpD {Escherichia coli [TaxId: 562]} Back     information, alignment and structure