BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032695
(135 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SAW|A Chain A, X-Ray Structure Of Homo Sapiens Protein Flj36880
pdb|1SAW|B Chain B, X-Ray Structure Of Homo Sapiens Protein Flj36880
Length = 225
Score = 144 bits (362), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 67/130 (51%), Positives = 88/130 (67%)
Query: 4 ASSAVQKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPL 63
AS + + + G IV VGRNYA H +E+ +AV EPVLFLKP+++Y G I +P
Sbjct: 7 ASRPLSRFWEWGKNIVCVGRNYADHVREMRSAVLSEPVLFLKPSTAYAPEGSPILMPAYT 66
Query: 64 DSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAKSAGLPWTVAKGQ 123
+LHHE+EL VV+G++ R VPE AMDYVGGYA+ LDMTAR++Q K GLPWT+AK
Sbjct: 67 RNLHHELELGVVMGKRCRAVPEAAAMDYVGGYALCLDMTARDVQDECKKKGLPWTLAKSF 126
Query: 124 DTFTPISSVV 133
P+S+ V
Sbjct: 127 TASCPVSAFV 136
>pdb|1NKQ|A Chain A, Crystal Structure Of Yeast Ynq8, A Fumarylacetoacetate
Hydrolase Family Protein
pdb|1NKQ|B Chain B, Crystal Structure Of Yeast Ynq8, A Fumarylacetoacetate
Hydrolase Family Protein
pdb|1NKQ|C Chain C, Crystal Structure Of Yeast Ynq8, A Fumarylacetoacetate
Hydrolase Family Protein
pdb|1NKQ|D Chain D, Crystal Structure Of Yeast Ynq8, A Fumarylacetoacetate
Hydrolase Family Protein
pdb|1NKQ|E Chain E, Crystal Structure Of Yeast Ynq8, A Fumarylacetoacetate
Hydrolase Family Protein
pdb|1NKQ|F Chain F, Crystal Structure Of Yeast Ynq8, A Fumarylacetoacetate
Hydrolase Family Protein
Length = 259
Score = 117 bits (294), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 63/151 (41%), Positives = 87/151 (57%), Gaps = 31/151 (20%)
Query: 12 IQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLG------------------- 52
++A KI+ +GRNYAAH KEL N+ PK+P FLKPTSS +
Sbjct: 6 LKAARKIICIGRNYAAHIKELNNSTPKQPFFFLKPTSSIVTPLSSSLVKTTRPANSTFNG 65
Query: 53 ------NGGTIEVPHPLDSLHHEVELAVVIGQKARDV----PETTAMDYVGGYAVALDMT 102
N G I +P + +HHE+ELA+++ + +V PE D + G A+ALD+T
Sbjct: 66 LNEDGTNPGPIFIPRGV-KVHHEIELALIVSKHLSNVTKXKPEE-VYDSISGVALALDLT 123
Query: 103 AREIQSSAKSAGLPWTVAKGQDTFTPISSVV 133
AR +Q AK GLPWT++KG DTF PIS++V
Sbjct: 124 ARNVQDEAKKKGLPWTISKGFDTFXPISAIV 154
>pdb|1NR9|A Chain A, Crystal Structure Of Escherichia Coli 1262 (Apc5008),
Putative Isomerase
pdb|1NR9|B Chain B, Crystal Structure Of Escherichia Coli 1262 (Apc5008),
Putative Isomerase
pdb|1NR9|C Chain C, Crystal Structure Of Escherichia Coli 1262 (Apc5008),
Putative Isomerase
pdb|1NR9|D Chain D, Crystal Structure Of Escherichia Coli 1262 (Apc5008),
Putative Isomerase
Length = 223
Score = 112 bits (279), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 54/118 (45%), Positives = 71/118 (60%)
Query: 16 TKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVV 75
+K+V VG NYA H KE G+AVP+EPVLF+KP ++ + +P S+HHEVELAV+
Sbjct: 19 SKVVCVGSNYAKHIKEXGSAVPEEPVLFIKPETALCDLRQPLAIPSDFGSVHHEVELAVL 78
Query: 76 IGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAKSAGLPWTVAKGQDTFTPISSVV 133
IG R E + GY VALD+T R++Q K AG PW AK D P+S +
Sbjct: 79 IGATLRQATEEHVRKAIAGYGVALDLTLRDVQGKXKKAGQPWEKAKAFDNSCPLSGFI 136
>pdb|3RR6|A Chain A, Structure Of A Putative Uncharacterized Protein From
Mycobacterium Abscessus Atcc 19977 DSM 44196
Length = 265
Score = 106 bits (265), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 75/114 (65%), Gaps = 4/114 (3%)
Query: 16 TKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVV 75
+K+VA+G+NYAAHA E+G P+ PV+F+KP +S +G G I++P +HHE ELA+V
Sbjct: 65 SKVVAMGKNYAAHAAEMGGDPPESPVIFIKPNTSIIGPGLPIQLPPSATEVHHEGELAIV 124
Query: 76 IGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAKSAGLPWTVAKGQDTFTPI 129
IG+ +DVP A + + GY + D++AR+ Q + WT AKG DTF P+
Sbjct: 125 IGRPCKDVPAARAAENILGYTIGNDVSARDHQRADGQ----WTRAKGHDTFCPL 174
>pdb|3V77|A Chain A, Crystal Structure Of A Putative Fumarylacetoacetate
IsomeraseHYDROLASE FROM OLEISPIRA ANTARCTICA
pdb|3V77|B Chain B, Crystal Structure Of A Putative Fumarylacetoacetate
IsomeraseHYDROLASE FROM OLEISPIRA ANTARCTICA
pdb|3V77|C Chain C, Crystal Structure Of A Putative Fumarylacetoacetate
IsomeraseHYDROLASE FROM OLEISPIRA ANTARCTICA
pdb|3V77|D Chain D, Crystal Structure Of A Putative Fumarylacetoacetate
IsomeraseHYDROLASE FROM OLEISPIRA ANTARCTICA
pdb|3V77|E Chain E, Crystal Structure Of A Putative Fumarylacetoacetate
IsomeraseHYDROLASE FROM OLEISPIRA ANTARCTICA
pdb|3V77|F Chain F, Crystal Structure Of A Putative Fumarylacetoacetate
IsomeraseHYDROLASE FROM OLEISPIRA ANTARCTICA
Length = 224
Score = 104 bits (260), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 68/117 (58%)
Query: 17 KIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVI 76
KIV VGRNYAAHAKEL N +P P+LF+KP SS + G +P S+HHE+E+A++I
Sbjct: 17 KIVCVGRNYAAHAKELNNPIPSSPILFIKPASSAVPFGPVFSIPKDQGSVHHELEIAILI 76
Query: 77 GQKARDVPETTAMDYVGGYAVALDMTAREIQSSAKSAGLPWTVAKGQDTFTPISSVV 133
G+ + + G + LD+T R++Q K G PW AK D P++ V
Sbjct: 77 GKALSRASTEQVAESIAGIGLGLDLTLRDVQDQLKEKGHPWERAKSFDGACPLTEFV 133
>pdb|3S52|A Chain A, Crystal Structure Of A Putative Fumarylacetoacetate
Hydrolase Family Protein From Yersinia Pestis Co92
pdb|3S52|B Chain B, Crystal Structure Of A Putative Fumarylacetoacetate
Hydrolase Family Protein From Yersinia Pestis Co92
pdb|3S52|C Chain C, Crystal Structure Of A Putative Fumarylacetoacetate
Hydrolase Family Protein From Yersinia Pestis Co92
pdb|3S52|D Chain D, Crystal Structure Of A Putative Fumarylacetoacetate
Hydrolase Family Protein From Yersinia Pestis Co92
Length = 221
Score = 104 bits (259), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 67/118 (56%)
Query: 16 TKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVV 75
K+V VG NYA H KE G+ EPVLF+KP ++ + +P S+HHE+ELAV+
Sbjct: 20 NKVVCVGSNYAEHIKEXGSTASVEPVLFIKPETALCDIRQPVSIPKDFGSVHHEIELAVL 79
Query: 76 IGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAKSAGLPWTVAKGQDTFTPISSVV 133
IG + E + GY VALD+T RE+Q+ K AG PW AK D PIS +
Sbjct: 80 IGTPLKQASEDRVARAIAGYGVALDLTLRELQAGFKKAGQPWEKAKAFDGSCPISGFI 137
>pdb|2DFU|A Chain A, Crystal Structure Of The
2-Hydroxyhepta-2,4-Diene-1,7-Dioate Isomerase From
Thermus Thermophilus Hb8
pdb|2DFU|B Chain B, Crystal Structure Of The
2-Hydroxyhepta-2,4-Diene-1,7-Dioate Isomerase From
Thermus Thermophilus Hb8
pdb|2DFU|C Chain C, Crystal Structure Of The
2-Hydroxyhepta-2,4-Diene-1,7-Dioate Isomerase From
Thermus Thermophilus Hb8
pdb|2DFU|D Chain D, Crystal Structure Of The
2-Hydroxyhepta-2,4-Diene-1,7-Dioate Isomerase From
Thermus Thermophilus Hb8
Length = 264
Score = 94.7 bits (234), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/127 (45%), Positives = 76/127 (59%), Gaps = 17/127 (13%)
Query: 16 TKIVAVGRNYAAHAKELGNA----VPKEPVLFLKPTSSYLGNG------GTIE-VPHPL- 63
TKIV VGRNY H +E+G+ +PKEP LFLK ++ G GT E VP+P
Sbjct: 48 TKIVCVGRNYREHIREMGHDFGEDLPKEPGLFLKGPNALARPGNPRDPWGTAEPVPYPFF 107
Query: 64 -DSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAKSAGLPWTVAKG 122
+ LH+E ELAVV+G + R VP A+D+V GY VA+D+TAR++Q L W AK
Sbjct: 108 TEELHYEGELAVVVGDRMRHVPPEKALDHVLGYTVAVDITARDVQKKD----LQWVRAKS 163
Query: 123 QDTFTPI 129
D F P+
Sbjct: 164 ADKFLPL 170
>pdb|1WZO|A Chain A, Crystal Structure Of The Hpce From Thermus Thermophilus
Hb8
pdb|1WZO|B Chain B, Crystal Structure Of The Hpce From Thermus Thermophilus
Hb8
pdb|1WZO|C Chain C, Crystal Structure Of The Hpce From Thermus Thermophilus
Hb8
pdb|1WZO|D Chain D, Crystal Structure Of The Hpce From Thermus Thermophilus
Hb8
Length = 246
Score = 92.4 bits (228), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 71/117 (60%), Gaps = 3/117 (2%)
Query: 17 KIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVI 76
KI+ V NYA HA+ELG + P+EP LF KP +S L + G + P +H+EVELAVV+
Sbjct: 45 KILGVALNYADHAEELGLSRPEEPALFWKPNTSLLPHKGVVLYPKGARFVHYEVELAVVV 104
Query: 77 GQKARDVPETTAMDYVGGYAVALDMTAREIQSSAKSAGLPWTVAKGQDTFTPISSVV 133
G+ + V A+DYV GY +A D+ AR+ ++ P AKG+DTF P+ +
Sbjct: 105 GRPMKRVRAKDALDYVLGYTIANDLVARDYVTNTFR---PPIRAKGRDTFLPLGPFL 158
>pdb|3QDF|A Chain A, Crystal Structure Of 2-Hydroxyhepta-2,4-Diene-1,7-Dioate
Isomerase From Mycobacterium Marinum
Length = 268
Score = 91.3 bits (225), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 68/117 (58%), Gaps = 7/117 (5%)
Query: 16 TKIVAVGRNYAAHAKELGN---AVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVEL 72
+K+V VG+NY H E+G P +PV+FLKP ++ +G I +P +H E EL
Sbjct: 65 SKVVCVGKNYTDHIAEMGGQTGPTPADPVIFLKPNTAIVGPNVPIRLPANASPVHFEGEL 124
Query: 73 AVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAKSAGLPWTVAKGQDTFTPI 129
A+VIG+ +DV A+D + GY + D++AR+ Q S WT AKG DTF P+
Sbjct: 125 AIVIGRPCKDVSAAQAVDNILGYTIGNDVSARDQQKSDGQ----WTRAKGHDTFCPV 177
>pdb|1I7O|A Chain A, Crystal Structure Of Hpce
pdb|1I7O|B Chain B, Crystal Structure Of Hpce
pdb|1I7O|C Chain C, Crystal Structure Of Hpce
pdb|1I7O|D Chain D, Crystal Structure Of Hpce
pdb|1GTT|A Chain A, Crystal Structure Of Hpce
pdb|1GTT|B Chain B, Crystal Structure Of Hpce
pdb|1GTT|C Chain C, Crystal Structure Of Hpce
pdb|1GTT|D Chain D, Crystal Structure Of Hpce
Length = 429
Score = 86.3 bits (212), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 67/116 (57%), Gaps = 3/116 (2%)
Query: 18 IVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIG 77
+ A+G NYA HA EL P+EP++FLK ++ G+ T P+ ++ +H+E EL VVIG
Sbjct: 225 LFALGLNYADHASELEFKPPEEPLVFLKAPNTLTGDNQTSVRPNNIEYMHYEAELVVVIG 284
Query: 78 QKARDVPETTAMDYVGGYAVALDMTAREIQSSAKSAGLPWTVAKGQDTFTPISSVV 133
++AR+V E AMDYV GY V D R+ + L K +D TP+ S +
Sbjct: 285 KQARNVSEADAMDYVAGYTVCNDYAIRDYLENYYRPNL---RVKSRDGLTPMLSTI 337
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 51/99 (51%), Gaps = 6/99 (6%)
Query: 35 AVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTAMDYVGG 94
A PK V F+KP ++ +G G I P + + +A+++G+ A V E A +Y+ G
Sbjct: 30 APPKTAVWFIKPRNTVIGCGEPIPFPQG-EKVLSGATVALIVGKTATKVREEDAAEYIAG 88
Query: 95 YAVALDMTAREIQSSAKSAGLPWTVAKGQDTFTPISSVV 133
YA+A D++ E +S P AK +D F PI V
Sbjct: 89 YALANDVSLPE-----ESFYRPAIKAKCRDGFCPIGETV 122
>pdb|4DBF|A Chain A, Crystal Structures Of Cg1458
pdb|4DBF|B Chain B, Crystal Structures Of Cg1458
pdb|4DBH|A Chain A, Crystal Structure Of Cg1458 With Inhibitor
pdb|4DBH|B Chain B, Crystal Structure Of Cg1458 With Inhibitor
Length = 288
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 63/116 (54%), Gaps = 6/116 (5%)
Query: 16 TKIVAVGRNYAAHAKEL--GNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELA 73
+K+VA+GRNYA H E+ +A P LFLKP ++ G I +P + E ELA
Sbjct: 81 SKVVAIGRNYADHVAEVFKKSAESLPPTLFLKPPTAVTGPESPIRIPSFATKVEFEGELA 140
Query: 74 VVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAKSAGLPWTVAKGQDTFTPI 129
VVIG+ ++V V G+ + D+++R++Q + W AKG DTF PI
Sbjct: 141 VVIGKPCKNVKADDWKSVVLGFTIINDVSSRDLQFADGQ----WARAKGIDTFGPI 192
>pdb|3R6O|A Chain A, Crystal Structure Of A Probable
2-Hydroxyhepta-2,4-Diene-1, 7- Dioateisomerase From
Mycobacterium Abscessus
Length = 329
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 64/118 (54%), Gaps = 7/118 (5%)
Query: 17 KIVAVGRNYAAHAKELGNAVPK--EPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAV 74
+++A+G NY H+ + + +PK +PV+F+K +S G + P +L +E+E+AV
Sbjct: 105 QVIALGFNYPTHS-DTDSPLPKMADPVVFMKSPTSISGPRDAVIAPRTSHALDYEIEIAV 163
Query: 75 VIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAKSAGLPWTV----AKGQDTFTP 128
VIG+ + + A+ +V GY +A D+TAR++ G P KG TF P
Sbjct: 164 VIGKPGYRIERSQAIKHVAGYMLANDITARDVALPFGFGGSPLQAQVVRGKGYPTFCP 221
>pdb|3F7M|A Chain A, Crystal Structure Of Apo Cuticle-Degrading Protease
(Ver112) From Verticillium Psalliotae
Length = 279
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Query: 78 QKARDVPETT--AMDYVGGYAVALDMTAREIQSSAKSAGLPWTVAKGQD 124
+++R+ P T +M GGY+ AL+ A +QSS G+ VA G D
Sbjct: 119 RQSRNCPRRTVASMSLGGGYSAALNQAAARLQSS----GVFVAVAAGND 163
>pdb|1P7D|A Chain A, Crystal Structure Of The Lambda Integrase (Residues
75-356) Bound To Dna
pdb|1P7D|B Chain B, Crystal Structure Of The Lambda Integrase (Residues
75-356) Bound To Dna
Length = 283
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 70 VELAVVIGQKARDVPETTAMDYVGGY 95
+ELAVV GQ+ D+ E D V GY
Sbjct: 130 MELAVVTGQRVGDLCEMKWSDIVDGY 155
>pdb|1AE9|A Chain A, Structure Of The Lambda Integrase Catalytic Core
pdb|1AE9|B Chain B, Structure Of The Lambda Integrase Catalytic Core
Length = 179
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 70 VELAVVIGQKARDVPETTAMDYVGGY 95
+ELAVV GQ+ D+ E D V GY
Sbjct: 27 MELAVVTGQRVGDLCEMKWSDIVDGY 52
>pdb|1Z1B|A Chain A, Crystal Structure Of A Lambda Integrase Dimer Bound To A
Coc' Core Site
pdb|1Z1B|B Chain B, Crystal Structure Of A Lambda Integrase Dimer Bound To A
Coc' Core Site
Length = 356
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 70 VELAVVIGQKARDVPETTAMDYVGGY 95
+ELAVV GQ+ D+ E D V GY
Sbjct: 203 MELAVVTGQRVGDLCEMKWSDIVDGY 228
>pdb|1Z19|A Chain A, Crystal Structure Of A Lambda Integrase(75-356) Dimer
Bound To A Coc' Core Site
pdb|1Z19|B Chain B, Crystal Structure Of A Lambda Integrase(75-356) Dimer
Bound To A Coc' Core Site
Length = 283
Score = 27.7 bits (60), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 71 ELAVVIGQKARDVPETTAMDYVGGY 95
ELAVV GQ+ D+ E D V GY
Sbjct: 131 ELAVVTGQRVGDLCEXKWSDIVDGY 155
>pdb|1Z1G|A Chain A, Crystal Structure Of A Lambda Integrase Tetramer Bound To
A Holliday Junction
pdb|1Z1G|C Chain C, Crystal Structure Of A Lambda Integrase Tetramer Bound To
A Holliday Junction
pdb|1Z1G|B Chain B, Crystal Structure Of A Lambda Integrase Tetramer Bound To
A Holliday Junction
pdb|1Z1G|D Chain D, Crystal Structure Of A Lambda Integrase Tetramer Bound To
A Holliday Junction
Length = 356
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 71 ELAVVIGQKARDVPETTAMDYVGGY 95
ELAVV GQ+ D+ E D V GY
Sbjct: 204 ELAVVTGQRVGDLCEXKWSDIVDGY 228
>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris
Turkestanicus Luciferase
Length = 582
Score = 26.9 bits (58), Expect = 3.9, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 12/76 (15%)
Query: 23 RNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARD 82
+ Y EL + + + P +F + G +P P D+ E+ AVV+ ++ +
Sbjct: 480 KGYQVPPAELESILLQHPFIF---------DAGVAGIPDP-DA--GELPAAVVVLEEGKT 527
Query: 83 VPETTAMDYVGGYAVA 98
+ E MDYV G A
Sbjct: 528 MTEQEVMDYVAGQVTA 543
>pdb|3C9F|A Chain A, Crystal Structure Of 5'-Nucleotidase From Candida Albicans
Sc5314
pdb|3C9F|B Chain B, Crystal Structure Of 5'-Nucleotidase From Candida Albicans
Sc5314
Length = 557
Score = 26.6 bits (57), Expect = 4.6, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 15/74 (20%)
Query: 56 TIEVPHPLDSLHHEVELAVVIG---------------QKARDVPETTAMDYVGGYAVALD 100
TI P ++L HEV+L +++G Q R T + Y GG++ D
Sbjct: 184 TIHEPWFQEALKHEVDLIIIVGHTPISHNWGEFYQVHQYLRQFFPDTIIQYFGGHSHIRD 243
Query: 101 MTAREIQSSAKSAG 114
T + S+ +G
Sbjct: 244 FTVFDSLSTGLQSG 257
>pdb|1UM9|B Chain B, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus
Thermophilus Hb8 In Apo-form
pdb|1UM9|D Chain D, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus
Thermophilus Hb8 In Apo-form
pdb|1UMB|B Chain B, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 In Holo-Form
pdb|1UMB|D Chain D, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 In Holo-Form
pdb|1UMC|B Chain B, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methylpentanoate
pdb|1UMC|D Chain D, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methylpentanoate
pdb|1UMD|B Chain B, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methyl-2-Oxopentanoate As An
Intermediate
pdb|1UMD|D Chain D, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methyl-2-Oxopentanoate As An
Intermediate
Length = 324
Score = 25.8 bits (55), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 14 AGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSY 50
AG K+VAV Y A ++PV+FL+P Y
Sbjct: 141 AGLKVVAVSTPYDAKGLLKAAIRDEDPVVFLEPKRLY 177
>pdb|1GV3|A Chain A, The 2.0 Angstrom Resolution Structure Of The Catalytic
Portion Of A Cyanobacterial Membrane-Bound Manganese
Superoxide Dismutase
pdb|1GV3|B Chain B, The 2.0 Angstrom Resolution Structure Of The Catalytic
Portion Of A Cyanobacterial Membrane-Bound Manganese
Superoxide Dismutase
Length = 248
Score = 25.4 bits (54), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 6 SAVQKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVL 42
A++K I A T + +++AA+ L NA+ K P L
Sbjct: 48 DALEKAIDAETMKLHHDKHHAAYVNNLNNALKKHPEL 84
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.128 0.360
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,909,297
Number of Sequences: 62578
Number of extensions: 154190
Number of successful extensions: 304
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 274
Number of HSP's gapped (non-prelim): 25
length of query: 135
length of database: 14,973,337
effective HSP length: 88
effective length of query: 47
effective length of database: 9,466,473
effective search space: 444924231
effective search space used: 444924231
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 46 (22.3 bits)