Query 032695
Match_columns 135
No_of_seqs 168 out of 1033
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 04:46:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032695.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032695hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0179 MhpD 2-keto-4-pentenoa 100.0 9.4E-46 2E-50 292.7 11.0 125 9-135 53-179 (266)
2 KOG1535 Predicted fumarylaceto 100.0 1E-44 2.2E-49 273.6 10.4 129 6-134 3-131 (217)
3 TIGR02303 HpaG-C-term 4-hydrox 100.0 3.6E-44 7.8E-49 281.0 11.5 118 14-134 41-158 (245)
4 PRK10691 hypothetical protein; 100.0 4.4E-41 9.5E-46 259.8 12.4 124 11-134 11-135 (219)
5 PRK15203 4-hydroxyphenylacetat 100.0 3.1E-39 6.7E-44 270.0 10.9 114 15-134 2-123 (429)
6 PRK15203 4-hydroxyphenylacetat 100.0 6.4E-39 1.4E-43 268.1 12.2 123 9-134 216-338 (429)
7 PRK12764 hypothetical protein; 100.0 7.5E-35 1.6E-39 247.5 11.1 124 7-134 13-136 (500)
8 TIGR02305 HpaG-N-term 4-hydrox 100.0 3.4E-34 7.3E-39 219.1 10.8 114 16-134 1-122 (205)
9 PLN02856 fumarylacetoacetase 100.0 4.5E-32 9.7E-37 225.6 10.2 118 14-135 126-272 (424)
10 TIGR01266 fum_ac_acetase fumar 100.0 2.6E-30 5.6E-35 214.7 8.7 118 15-135 117-264 (415)
11 PF01557 FAA_hydrolase: Fumary 100.0 3.4E-30 7.3E-35 197.7 7.3 117 17-134 1-126 (218)
12 KOG2843 Fumarylacetoacetase [C 99.6 1.6E-15 3.4E-20 120.9 3.1 93 39-134 155-265 (420)
13 COG3970 Fumarylacetoacetate (F 99.0 5.5E-10 1.2E-14 89.9 4.8 83 39-134 168-251 (379)
14 TIGR03220 catechol_dmpE 2-oxop 98.5 4E-07 8.7E-12 71.8 7.3 95 19-122 55-154 (255)
15 TIGR02312 HpaH 2-oxo-hepta-3-e 97.9 8.9E-05 1.9E-09 59.0 8.2 102 19-127 60-163 (267)
16 PRK11342 mhpD 2-keto-4-penteno 97.5 0.00038 8.3E-09 55.1 7.2 85 19-107 59-145 (262)
17 COG3802 GguC Uncharacterized p 96.6 0.0022 4.7E-08 51.2 3.5 82 39-133 140-224 (333)
18 COG3971 2-keto-4-pentenoate hy 93.1 0.1 2.3E-06 41.6 3.4 78 20-101 61-140 (264)
19 TIGR03218 catechol_dmpH 4-oxal 89.7 2.2 4.7E-05 33.9 7.6 67 39-106 80-148 (263)
20 PF12596 Tnp_P_element_C: 87kD 47.5 3.3 7.1E-05 28.8 -1.4 15 83-97 73-87 (106)
21 PF08965 DUF1870: Domain of un 46.6 6.9 0.00015 27.7 0.1 23 83-110 15-37 (118)
22 PF08331 DUF1730: Domain of un 39.1 22 0.00047 22.8 1.6 19 9-27 5-23 (78)
23 PF11010 DUF2848: Protein of u 35.8 96 0.0021 23.8 4.9 68 27-109 13-84 (194)
24 cd02134 NusA_KH NusA_K homolog 35.3 13 0.00028 22.7 0.1 16 69-84 33-48 (61)
25 cd02414 jag_KH jag_K homology 27.6 29 0.00063 22.0 0.8 20 71-93 34-53 (77)
26 PRK01064 hypothetical protein; 25.3 37 0.00079 22.1 0.9 15 70-84 39-53 (78)
27 TIGR03882 cyclo_dehyd_2 bacter 23.9 69 0.0015 24.1 2.3 27 108-134 157-183 (193)
28 PF08643 DUF1776: Fungal famil 23.8 2.3E+02 0.0051 23.1 5.5 57 69-125 2-59 (299)
No 1
>COG0179 MhpD 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=9.4e-46 Score=292.66 Aligned_cols=125 Identities=45% Similarity=0.783 Sum_probs=117.2
Q ss_pred hhcccCCCcEEEEccCcHHHHHHhCCC--CCCCCEEEecCCCCccCCCCcEeecCCCCCcccceEEEEEECCCCCCCCcc
Q 032695 9 QKLIQAGTKIVAVGRNYAAHAKELGNA--VPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPET 86 (135)
Q Consensus 9 ~~~l~~~~ki~~~g~NY~~h~~e~~~~--~p~~P~~F~K~~~al~g~~~~i~~P~~~~~ld~E~ELavVIGk~~~~i~~~ 86 (135)
..++.+++||||+|+||++|++|++.. .|+.|++|+|+++++++++++|.+|+.+..+|||+||||||||++++|+++
T Consensus 53 ~~~~~~~~ki~cvG~NY~~Ha~E~~~~~~~p~~P~~F~K~~~a~~~~~~~i~~P~~s~~~dyE~ELavvIGk~~~~v~~e 132 (266)
T COG0179 53 LAPLPPPGKIVCVGRNYADHAEEMGKDRDIPEEPVFFLKPPTAVIGPNDPIPLPPGSKGLDYEGELAVVIGKRGKDVSVE 132 (266)
T ss_pred ccCCCCCCcEEEEechHHHHHHHhccCCCCCCCCeeeccCcccccCCCCceECCCCCCCcceeEEEEEEECCcCCCCCHH
Confidence 445556789999999999999999985 899999999999999999999999999999999999999999999999999
Q ss_pred cHhhhhceEeeEeecchHHHHHhhhhcCCCcccccCCCCCCccCcceeC
Q 032695 87 TAMDYVGGYAVALDMTAREIQSSAKSAGLPWTVAKGQDTFTPISSVVRN 135 (135)
Q Consensus 87 ~A~~~I~Gytv~nD~T~Rd~q~~~~~~g~~w~~~K~~d~f~plGP~i~~ 135 (135)
+|++||+|||++||+|+||+|.. +.++||+++|+||+|||+||||++
T Consensus 133 ~A~d~I~GYti~nD~T~Rd~Q~~--~~~~~w~~aK~~d~~~Pigp~iv~ 179 (266)
T COG0179 133 DALDYIAGYTIGNDVTARDLQME--EKGRPWTRAKGFDTFAPVGPWIVT 179 (266)
T ss_pred HHHhhheEEeeeeecchhcchhh--hhcCCcccccccCCCCCceeEEec
Confidence 99999999999999999999965 457899999999999999999974
No 2
>KOG1535 consensus Predicted fumarylacetoacetate hydralase [General function prediction only]
Probab=100.00 E-value=1e-44 Score=273.59 Aligned_cols=129 Identities=63% Similarity=0.962 Sum_probs=124.3
Q ss_pred hhhhhcccCCCcEEEEccCcHHHHHHhCCCCCCCCEEEecCCCCccCCCCcEeecCCCCCcccceEEEEEECCCCCCCCc
Q 032695 6 SAVQKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPE 85 (135)
Q Consensus 6 ~~~~~~l~~~~ki~~~g~NY~~h~~e~~~~~p~~P~~F~K~~~al~g~~~~i~~P~~~~~ld~E~ELavVIGk~~~~i~~ 85 (135)
..+..++..++||+|+|+||.+|++|++...|++|++|+|+.++++++|++|.+|+....+|||+||++||||+|+++++
T Consensus 3 ~~~~~~~~~~~KIVcVg~NY~dh~~E~~~~~PkeP~~FlKptss~v~~g~~i~~p~~~~~lh~EvEL~vVigK~~~~v~~ 82 (217)
T KOG1535|consen 3 VMLLRPLKWPTKIVCVGRNYADHCKELNNPVPKEPFFFLKPTSSIVGPGGPIVIPPGSKGLHHEVELAVVIGKKGSSVKK 82 (217)
T ss_pred cchhhhhhcCCeEEEecccHHHHHHHhCCCCCCCCeEEeecchhhcCCCCceEcCCCcCccceeEEEEEEeccccccCCh
Confidence 34567888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHhhhhceEeeEeecchHHHHHhhhhcCCCcccccCCCCCCccCccee
Q 032695 86 TTAMDYVGGYAVALDMTAREIQSSAKSAGLPWTVAKGQDTFTPISSVVR 134 (135)
Q Consensus 86 ~~A~~~I~Gytv~nD~T~Rd~q~~~~~~g~~w~~~K~~d~f~plGP~i~ 134 (135)
.+|++||+||+++.|+|+||+|.+.+..|.||+.+|+||+|||+|.+++
T Consensus 83 ~~amd~v~Gy~valDmtARd~q~~ak~~g~pw~l~K~~Dtf~Pis~~vp 131 (217)
T KOG1535|consen 83 KDAMDYVGGYAVALDMTARDWQDEAKKKGLPWTLGKGFDTFTPISAIVP 131 (217)
T ss_pred hhcccccccEEEEeeccchhhhhhhhhcCCCeeeccccCccCccccccc
Confidence 9999999999999999999999999999999999999999999998875
No 3
>TIGR02303 HpaG-C-term 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, C-terminal subunit. This model represents one of two subunits/domains of the bifunctional isomerase/decarboxylase involved in 4-hydroxyphenylacetate degradation. In E. coli and some other species this enzyme is encoded by a single polypeptide containing both this domain and the closely related N-terminal domain (TIGR02305). In other species such as Pasteurella multocida these domains are found as two separate proteins (usually as tandem genes). Together, these domains carry out the decarboxylation of 5-oxopent-3-ene-1,2,5-tricarboxylic acid (OPET) to 2-hydroxy-2,4-diene-1,7-dioate (HHDD) and the subsequent isomerization to 2-oxohept-3-ene-1,7-dioate (OHED).
Probab=100.00 E-value=3.6e-44 Score=281.04 Aligned_cols=118 Identities=41% Similarity=0.607 Sum_probs=112.6
Q ss_pred CCCcEEEEccCcHHHHHHhCCCCCCCCEEEecCCCCccCCCCcEeecCCCCCcccceEEEEEECCCCCCCCcccHhhhhc
Q 032695 14 AGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTAMDYVG 93 (135)
Q Consensus 14 ~~~ki~~~g~NY~~h~~e~~~~~p~~P~~F~K~~~al~g~~~~i~~P~~~~~ld~E~ELavVIGk~~~~i~~~~A~~~I~ 93 (135)
.|+||+|+|+||++|++|++.+.|+.|++|+|+++++++++++|.+|..+..+|||+||+|||||++++++++||++||+
T Consensus 41 ~p~ki~~vg~Ny~~h~~e~~~~~p~~P~~F~Kp~~s~~g~~~~i~~P~~~~~ld~E~EL~vvigk~~~~v~~~~A~~~I~ 120 (245)
T TIGR02303 41 EPGTIFALGLNYADHASELGFSPPEEPLVFLKGNNTLTGHKGVTYRPKDVRFMHYECELAVVVGKTAKNVKREDAMDYVL 120 (245)
T ss_pred CCCeEEEEeCCHHHHHHHhCCCCCCCCEEEEcCcceeeCCCCcEECCCCCCceeEEEEEEEEECCCCCCCCHHHHhhhee
Confidence 36899999999999999999988999999999999999999999999998899999999999999999999999999999
Q ss_pred eEeeEeecchHHHHHhhhhcCCCcccccCCCCCCccCccee
Q 032695 94 GYAVALDMTAREIQSSAKSAGLPWTVAKGQDTFTPISSVVR 134 (135)
Q Consensus 94 Gytv~nD~T~Rd~q~~~~~~g~~w~~~K~~d~f~plGP~i~ 134 (135)
|||++||+|+||+|.. .+.||.++|+||+|+|+|||++
T Consensus 121 Gytv~nD~T~Rd~q~~---~~~~~~~aK~~D~~~plGp~i~ 158 (245)
T TIGR02303 121 GYTIANDYAIRDYLEN---YYRPNLRVKNRDTFTPIGPWIV 158 (245)
T ss_pred EEEEEeecchHHHHhh---hcCCcccccCCCCCEeeCCcCC
Confidence 9999999999999963 3578999999999999999986
No 4
>PRK10691 hypothetical protein; Provisional
Probab=100.00 E-value=4.4e-41 Score=259.75 Aligned_cols=124 Identities=44% Similarity=0.745 Sum_probs=116.9
Q ss_pred cccC-CCcEEEEccCcHHHHHHhCCCCCCCCEEEecCCCCccCCCCcEeecCCCCCcccceEEEEEECCCCCCCCcccHh
Q 032695 11 LIQA-GTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTAM 89 (135)
Q Consensus 11 ~l~~-~~ki~~~g~NY~~h~~e~~~~~p~~P~~F~K~~~al~g~~~~i~~P~~~~~ld~E~ELavVIGk~~~~i~~~~A~ 89 (135)
.+.. .+||+|+|+||++|++|++.+.|+.|++|+|+++++++++++|.+|....++|||+|||+||||++++++++||+
T Consensus 11 ~~~~~~~ki~~vg~Ny~~h~~e~~~~~p~~P~~F~K~~~~~~~~~~~i~~P~~~~~ld~E~ELavvigk~~~~v~~~~a~ 90 (219)
T PRK10691 11 LLDYPVSKVVCVGSNYAKHIKEMGSATPEEPVLFIKPETALCDLRQPLAIPKDFGSVHHEVELAVLIGATLRQATEEHVR 90 (219)
T ss_pred cCCCCCCcEEEEecCHHHHHHHhCCCCCCCCEEEECCcceeeCCCCcEECCCCCCCeeEEEEEEEEECCCCCCCCHHHHh
Confidence 3433 499999999999999999998999999999999999999999999998889999999999999999999999999
Q ss_pred hhhceEeeEeecchHHHHHhhhhcCCCcccccCCCCCCccCccee
Q 032695 90 DYVGGYAVALDMTAREIQSSAKSAGLPWTVAKGQDTFTPISSVVR 134 (135)
Q Consensus 90 ~~I~Gytv~nD~T~Rd~q~~~~~~g~~w~~~K~~d~f~plGP~i~ 134 (135)
+||+|||++||+|+|++|...+..|.||.++|+||+|+|+|||++
T Consensus 91 ~~V~gyt~~nDvt~r~~q~~~~~~~~~~~~~K~~D~~~~~gp~i~ 135 (219)
T PRK10691 91 KAIAGYGVALDLTLRDLQGKMKKAGQPWEKAKAFDNSCPISGFIP 135 (219)
T ss_pred hhheEEEEEEEeEhhhhhhhhccccCCccccccCCCCcCcCCcEE
Confidence 999999999999999999887666789999999999999999985
No 5
>PRK15203 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; Provisional
Probab=100.00 E-value=3.1e-39 Score=270.04 Aligned_cols=114 Identities=31% Similarity=0.438 Sum_probs=106.0
Q ss_pred CCcEEEEccCcHHHHHHhC--------CCCCCCCEEEecCCCCccCCCCcEeecCCCCCcccceEEEEEECCCCCCCCcc
Q 032695 15 GTKIVAVGRNYAAHAKELG--------NAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPET 86 (135)
Q Consensus 15 ~~ki~~~g~NY~~h~~e~~--------~~~p~~P~~F~K~~~al~g~~~~i~~P~~~~~ld~E~ELavVIGk~~~~i~~~ 86 (135)
.+||+|+|+||++|++|++ .+.|+.|++|+|+++++++++++|.+|... .+|||+||++||||++++|+++
T Consensus 2 ~~ki~~vg~Ny~~~~~~~~~~~~~~~~~~~p~~P~~F~Kp~~al~g~~~~i~~P~~~-~~~~E~EL~vvIGk~~~~v~~~ 80 (429)
T PRK15203 2 KGTIFAVALNHRSQLDAWQEAFQQSPYKAPPKTAVWFIKPRNTVIRCGEPIPFPQGE-KVLSGATVALIVGKTATKVREE 80 (429)
T ss_pred CceEEEEeCchHHHHHhhhhhccccccCCCCCCCEEEecCcceeeCCCCcEECCCCC-CceEEEEEEEEECCccCCCCHH
Confidence 4699999999999999865 256899999999999999999999999874 7999999999999999999999
Q ss_pred cHhhhhceEeeEeecchHHHHHhhhhcCCCcccccCCCCCCccCccee
Q 032695 87 TAMDYVGGYAVALDMTAREIQSSAKSAGLPWTVAKGQDTFTPISSVVR 134 (135)
Q Consensus 87 ~A~~~I~Gytv~nD~T~Rd~q~~~~~~g~~w~~~K~~d~f~plGP~i~ 134 (135)
+|++||+|||++||+|+||+|. +.||.++|+||||||+||||+
T Consensus 81 ~A~~~V~Gyti~nD~t~rd~q~-----~~~~~~~K~~D~~~p~Gp~i~ 123 (429)
T PRK15203 81 DAAEYIAGYALANDVSLPEESF-----YRPAIKAKCRDGFCPIGETVA 123 (429)
T ss_pred HHhhheeEEEEEEEeechhhcc-----cCCcccccCCCCCcccCCeEE
Confidence 9999999999999999999874 468999999999999999986
No 6
>PRK15203 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; Provisional
Probab=100.00 E-value=6.4e-39 Score=268.14 Aligned_cols=123 Identities=38% Similarity=0.562 Sum_probs=115.3
Q ss_pred hhcccCCCcEEEEccCcHHHHHHhCCCCCCCCEEEecCCCCccCCCCcEeecCCCCCcccceEEEEEECCCCCCCCcccH
Q 032695 9 QKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTA 88 (135)
Q Consensus 9 ~~~l~~~~ki~~~g~NY~~h~~e~~~~~p~~P~~F~K~~~al~g~~~~i~~P~~~~~ld~E~ELavVIGk~~~~i~~~~A 88 (135)
..++++++||+|+|+||++|++|++.+.|+.|++|+|+++++++++++|.+|+.+..+|||+|||+||||++++++++||
T Consensus 216 ~~p~~~~~ki~~vg~Ny~~h~~e~~~~~p~~P~~F~K~~~s~~g~~~~i~~P~~~~~ld~E~ELavVigk~~~~v~~~ea 295 (429)
T PRK15203 216 PTPPHPHGTLFALGLNYADHASELEFKPPEEPLVFLKAPNTLTGDNQTSVRPNNIEYMHYEAELVVVIGKQARKVSEADA 295 (429)
T ss_pred ccCCCCCCeEEEEcCCHHHHHHHhCCCCCCCCEEEEcCcceeeCCCCCEECCCCCCceEEEEEEEEEECCCCCCCCHHHH
Confidence 34556789999999999999999998899999999999999999999999999988999999999999999999999999
Q ss_pred hhhhceEeeEeecchHHHHHhhhhcCCCcccccCCCCCCccCccee
Q 032695 89 MDYVGGYAVALDMTAREIQSSAKSAGLPWTVAKGQDTFTPISSVVR 134 (135)
Q Consensus 89 ~~~I~Gytv~nD~T~Rd~q~~~~~~g~~w~~~K~~d~f~plGP~i~ 134 (135)
++||+|||++||+|+||+|.. .+.+|.++|+||+|+|+|||++
T Consensus 296 ~~~V~Gy~~~nD~t~rd~q~~---~~~~w~~~K~~d~~~plGp~~v 338 (429)
T PRK15203 296 MDYVAGYTVCNDYAIRDYLEN---YYRPNLRVKSRDGLTPILSTIV 338 (429)
T ss_pred hhheeEEEEEEeccchhhhhh---hcCCceEeccCCCCcCCCCCEe
Confidence 999999999999999999954 3578999999999999999985
No 7
>PRK12764 hypothetical protein; Provisional
Probab=100.00 E-value=7.5e-35 Score=247.51 Aligned_cols=124 Identities=35% Similarity=0.492 Sum_probs=114.5
Q ss_pred hhhhcccCCCcEEEEccCcHHHHHHhCCCCCCCCEEEecCCCCccCCCCcEeecCCCCCcccceEEEEEECCCCCCCCcc
Q 032695 7 AVQKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPET 86 (135)
Q Consensus 7 ~~~~~l~~~~ki~~~g~NY~~h~~e~~~~~p~~P~~F~K~~~al~g~~~~i~~P~~~~~ld~E~ELavVIGk~~~~i~~~ 86 (135)
.+..++..|+||+|+|+||++|++|++. .|+.|.+|+|+++++++++++|.+|.....+|||+||++||||++++++++
T Consensus 13 ~~~~~~~~p~kIi~vg~Ny~~ha~e~~~-~p~~P~~f~K~~~sl~~~g~~I~~p~~~~~l~~E~ELavVIgr~~~~v~~e 91 (500)
T PRK12764 13 VVAPLLARPGKVIAVHLNYPSRAAQRGR-TPAQPSYFLKPSSSLALSGGTVERPAGTELLAFEGEIALVIGRPARRVSPE 91 (500)
T ss_pred cccCCCCCCCcEEEECCCCHHHHHHhCC-CCCCCEEEEeccceEeCCCCeEECCCCCCceeEEEEEEEEECCcCCCCCHH
Confidence 4456667889999999999999999985 489999999999999999999999988888999999999999999999999
Q ss_pred cHhhhhceEeeEeecchHHHHHhhhhcCCCcccccCCCCCCccCccee
Q 032695 87 TAMDYVGGYAVALDMTAREIQSSAKSAGLPWTVAKGQDTFTPISSVVR 134 (135)
Q Consensus 87 ~A~~~I~Gytv~nD~T~Rd~q~~~~~~g~~w~~~K~~d~f~plGP~i~ 134 (135)
||++||+|||++||+|+||+|..++ ..|.++|+||+|+|+|||++
T Consensus 92 ea~~~I~Gyt~~nDvt~rD~~~~d~---~~~~~~K~~Dg~~plGp~iv 136 (500)
T PRK12764 92 DAWSHVAAVTAANDLGVYDLRYADK---GSNLRSKGGDGFTPIGPALI 136 (500)
T ss_pred HHHhhheEEEEecceeeehhhhhhc---CCcccccccCccEecCCCcc
Confidence 9999999999999999999987653 36889999999999999975
No 8
>TIGR02305 HpaG-N-term 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, N-terminal subunit. This model represents one of two subunits/domains of the bifunctional isomerase/decarboxylase involved in 4-hydroxyphenylacetate degradation. In E. coli and some other species this enzyme is encoded by a single polypeptide containing both this domain and the closely related C-terminal domain (TIGR02303). In other species such as Pasteurella multocida these domains are found as two separate proteins (usually as tandem genes). Together, these domains carry out the decarboxylation of 5-oxopent-3-ene-1,2,5-tricarboxylic acid (OPET) to 2-hydroxy-2,4-diene-1,7-dioate (HHDD) and the subsequent isomerization to 2-oxohept-3-ene-1,7-dioate (OHED).
Probab=100.00 E-value=3.4e-34 Score=219.12 Aligned_cols=114 Identities=36% Similarity=0.541 Sum_probs=106.0
Q ss_pred CcEEEEccCcHHHHHHhCC--------CCCCCCEEEecCCCCccCCCCcEeecCCCCCcccceEEEEEECCCCCCCCccc
Q 032695 16 TKIVAVGRNYAAHAKELGN--------AVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETT 87 (135)
Q Consensus 16 ~ki~~~g~NY~~h~~e~~~--------~~p~~P~~F~K~~~al~g~~~~i~~P~~~~~ld~E~ELavVIGk~~~~i~~~~ 87 (135)
+||+|+|.||++|++|++. +.|+.|.+|+|+++++++++++|.+|.....++||+|||+||||.++++++++
T Consensus 1 ~~i~~vg~ny~~h~~~~~~~~~~~~~~~~p~~P~~f~k~~~~~~~~g~~i~~p~~~~~~~~E~ELa~vigr~~~~~~~~~ 80 (205)
T TIGR02305 1 GTVFGVALNYREQLDRLQEAFQQAPYKAPPKTPVLYIKPRNTHNGCGQPIPLPAGVEKLRSGATLALVVGRTACRVREEE 80 (205)
T ss_pred CcEEEEeCcHHHHHHHhcccccccccCCCCCCCEEEEcCcceEeCCCCeEECCCCCCCccEEEEEEEEECCCCCCCCHHH
Confidence 5899999999999999985 46899999999999999999999999877889999999999999999999999
Q ss_pred HhhhhceEeeEeecchHHHHHhhhhcCCCcccccCCCCCCccCccee
Q 032695 88 AMDYVGGYAVALDMTAREIQSSAKSAGLPWTVAKGQDTFTPISSVVR 134 (135)
Q Consensus 88 A~~~I~Gytv~nD~T~Rd~q~~~~~~g~~w~~~K~~d~f~plGP~i~ 134 (135)
|++||+||+++||+|+|+.+. +.+|.++|+||+++++|||++
T Consensus 81 a~~~v~g~~~~~dit~~~~~~-----~~~~~~~k~~dg~~~lGp~v~ 122 (205)
T TIGR02305 81 ALDYVAGYALVNDVSLPEDSY-----YRPAIKAKCRDGFCPIGPEVP 122 (205)
T ss_pred HHHhhheeEEeeeeehhhhhc-----cCcchhhcccCCccccCCccc
Confidence 999999999999999998753 357999999999999999964
No 9
>PLN02856 fumarylacetoacetase
Probab=99.97 E-value=4.5e-32 Score=225.59 Aligned_cols=118 Identities=25% Similarity=0.278 Sum_probs=103.9
Q ss_pred CCCcEEEEccCcHHHHHHhCCC--------CCC---CCEEEecCCCCccCCCCcEeecCC---------------CCCcc
Q 032695 14 AGTKIVAVGRNYAAHAKELGNA--------VPK---EPVLFLKPTSSYLGNGGTIEVPHP---------------LDSLH 67 (135)
Q Consensus 14 ~~~ki~~~g~NY~~h~~e~~~~--------~p~---~P~~F~K~~~al~g~~~~i~~P~~---------------~~~ld 67 (135)
+++++.|. .||.+|+.|.|.. .|. .|++|.|++++++++|++|.+|.+ +..+|
T Consensus 126 ~~~~~~df-~~~~~Ha~n~g~~fr~~~~~l~p~~~~~Pv~y~gr~sSvv~sg~~I~rP~gq~~~~~~~~~p~f~~s~~lD 204 (424)
T PLN02856 126 VIGDYTDF-FSSREHATNVGTMFRGPENALNPNWLHLPIGYHGRASSVVPSGTDIRRPRGQLHPNDGSSRPYFGPSAKLD 204 (424)
T ss_pred ccceEEEE-ecHHHHHHHhhhhccCCccCCCcccccCCCEEcCCCceEEcCCCceeCCCCCccCCCCCCCCcccCcCceE
Confidence 46888888 9999999999742 133 399999999999999999999974 67899
Q ss_pred cceEEEEEECCC---CCCCCcccHhhhhceEeeEeecchHHHHHhhhhcCCCcccccCCCCCCccCcceeC
Q 032695 68 HEVELAVVIGQK---ARDVPETTAMDYVGGYAVALDMTAREIQSSAKSAGLPWTVAKGQDTFTPISSVVRN 135 (135)
Q Consensus 68 ~E~ELavVIGk~---~~~i~~~~A~~~I~Gytv~nD~T~Rd~q~~~~~~g~~w~~~K~~d~f~plGP~i~~ 135 (135)
||+||++||||. +++|++++|++||+|||++||||+||+|..++. ...|+++|+||++ |||||++
T Consensus 205 yE~ELavVIGk~~~~g~~I~~~~A~d~IfGytl~ND~SARDiQ~wE~~-plgpf~gKsF~t~--igPwIVt 272 (424)
T PLN02856 205 FELEMAAFVGPGNELGKPIPVNEAKDHIFGLVLMNDWSARDIQKWEYV-PLGPFLGKSFATT--ISPWIVT 272 (424)
T ss_pred EEEEEEEEECcCccccCCCCHHHHHhhheEEEEeeechhhhhhhhhcc-cCCcccccCCCCC--CcCeEEc
Confidence 999999999997 899999999999999999999999999987743 3457899999985 9999974
No 10
>TIGR01266 fum_ac_acetase fumarylacetoacetase. This enzyme catalyzes the final step in the breakdown of tyrosine or phenylalanine to fumarate and acetoacetate.
Probab=99.96 E-value=2.6e-30 Score=214.73 Aligned_cols=118 Identities=25% Similarity=0.238 Sum_probs=103.4
Q ss_pred CCcE--EEEccCcHHHHHHhCCC-------C----CCCCEEEecCCCCccCCCCcEeecCC--------------CCCcc
Q 032695 15 GTKI--VAVGRNYAAHAKELGNA-------V----PKEPVLFLKPTSSYLGNGGTIEVPHP--------------LDSLH 67 (135)
Q Consensus 15 ~~ki--~~~g~NY~~h~~e~~~~-------~----p~~P~~F~K~~~al~g~~~~i~~P~~--------------~~~ld 67 (135)
|-+| |....+|..|+.+.|.- . ...|++|+|++++++++|++|.+|.+ +..+|
T Consensus 117 P~~i~dytDf~~~~~Ha~n~g~~fr~~~~~l~p~~~~~Pv~y~g~~sSvv~sg~~I~rP~gq~~~~~~~~p~f~ps~~lD 196 (415)
T TIGR01266 117 PAQIGDYTDFYSSIQHATNVGIMFRGKENALLPNWKHLPVGYHGRASSIVVSGTPLRRPMGQTLPDNAKPPVFGPCKLLD 196 (415)
T ss_pred CccchhhhhhhchHHHHHHHHhhccCCCCCCCcccccCCcEeccCCceEEcCCCceeCCCccccCCcccCCcccccCceE
Confidence 5565 78899999999998631 1 24699999999999999999999975 78899
Q ss_pred cceEEEEEECCC---CCCCCcccHhhhhceEeeEeecchHHHHHhhhhcCCCcccccCCCCCCccCcceeC
Q 032695 68 HEVELAVVIGQK---ARDVPETTAMDYVGGYAVALDMTAREIQSSAKSAGLPWTVAKGQDTFTPISSVVRN 135 (135)
Q Consensus 68 ~E~ELavVIGk~---~~~i~~~~A~~~I~Gytv~nD~T~Rd~q~~~~~~g~~w~~~K~~d~f~plGP~i~~ 135 (135)
||+||++||||. +++|++++|++||+|||++||||+||+|..++. ...|+++|+||++ |||||++
T Consensus 197 ~E~ELavvIGk~~~~g~~vs~e~A~~~IfGy~l~ND~SARDiQ~wE~~-plgpf~~KsF~ts--igPwIVT 264 (415)
T TIGR01266 197 MELEMAFFVGPGNRLGEPIPISKAEEHIFGVVLMNDWSARDIQAWEYV-PLGPFLAKSFGTT--ISPWVVP 264 (415)
T ss_pred EEEEEEEEECcCcccCCcCCHHHHHhhheEEEEeeEcchhhhhhhhcc-ccCccccccCCCC--CcCeEec
Confidence 999999999998 899999999999999999999999999987764 3446799999996 9999973
No 11
>PF01557 FAA_hydrolase: Fumarylacetoacetate (FAA) hydrolase family Mutations in Swiss:P16930 cause inherited tyrosinemia type I.; InterPro: IPR002529 Fumarylacetoacetase (3.7.1.2 from EC; also known as fumarylacetoacetate hydrolase or FAH) catalyses the hydrolytic cleavage of a carbon-carbon bond in fumarylacetoacetate to yield fumarate and acetoacetate as the final step in phenylalanine and tyrosine degradation []. This is an essential metabolic function in humans, the lack of FAH causing type I tyrosinaemia, which is associated with liver and kidney abnormalities and neurological disorders [, ]. The enzyme mechanism involves a catalytic metal ion, a Glu/His catalytic dyad, and a charged oxyanion hole []. FAH folds into two domains: an N-terminal domain SH3-like beta-barrel, and a C-terminal with an unusual fold consisting of three layers of beta-sheet structures []. This entry represents the C-terminal domain of fumarylacetoacetase, as well as other domains that share a homologous sequence, including: 5-carboxymethyl-2-hydroxymuconate delta-isomerase (CHM isomerase; 5.3.3.10 from EC), which catalyses the conversion of 5-carboxymethyl-2-hydroxymuconate to 5-carboxy-2-oxohept-3-enedioate []. 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase (OPET decarboxylase; 4.1.1.68 from EC), which catalyses the conversion of 5-oxopent-3-ene-1,2,5-tricarboxylate to 2-oxohept-3-enedioate and carbon dioxide. Bifunctional enzyme HpcE (OPET decarboxylase 4.1.1.68 from EC/HHDD isomerase 5.3.3.10 from EC), which is a duplication consisting of a tandem repeat of two FAH C-terminal-like domains. This enzyme is responsible for the degradation of 4-hydroxyphenylacetate, a product of tyrosine and phenylalanine metabolism also released by lignin catabolism []. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1SAW_B 3LZK_B 3S52_B 2WQT_Q 1SV6_C 2DFU_B 1WZO_D 3QDF_A 1GTT_B 1I7O_C ....
Probab=99.96 E-value=3.4e-30 Score=197.74 Aligned_cols=117 Identities=43% Similarity=0.691 Sum_probs=106.3
Q ss_pred cEEEEccCcHHHHHHhCC---CCCC-----CCEEEecCCCCccCCCCcEeecCCCCCcccceEEEEEECCCCCCC-Cccc
Q 032695 17 KIVAVGRNYAAHAKELGN---AVPK-----EPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDV-PETT 87 (135)
Q Consensus 17 ki~~~g~NY~~h~~e~~~---~~p~-----~P~~F~K~~~al~g~~~~i~~P~~~~~ld~E~ELavVIGk~~~~i-~~~~ 87 (135)
||+|+++||.+|++|++. +.|. .|.+|.|+++++.++|++|.+|..+..++||+||++||||.++++ +++|
T Consensus 1 ~v~~~~~n~~~~~~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~g~~i~~p~~~~~~~~E~Ela~vig~~~~~~~~~~e 80 (218)
T PF01557_consen 1 KVVGVGLNYTSHAEEAGAGDVDEPDYGVPVEPVFFMKPPSSLVGSGAPIPLPRGSRRLDYEAELAFVIGRPLRNVYTPEE 80 (218)
T ss_dssp EEEEEESEBHHHHHHTTTTCSSTTSEECECSGEEEEEEGGGEEETTSEEEECTTSSSEEEEEEEEEEESS-BSSTH-HHH
T ss_pred CEEEEeEchHHHHHHhCcCCCCCCccccccCCeEEecCCceeecCCCceecCccccccCcceEEEEEEecCCCCCCCHHH
Confidence 799999999999999973 3344 899999999999999999999999889999999999999999999 9999
Q ss_pred HhhhhceEeeEeecchHHHHHhhhhcCCCcccccCCCCCCccCccee
Q 032695 88 AMDYVGGYAVALDMTAREIQSSAKSAGLPWTVAKGQDTFTPISSVVR 134 (135)
Q Consensus 88 A~~~I~Gytv~nD~T~Rd~q~~~~~~g~~w~~~K~~d~f~plGP~i~ 134 (135)
|++||+||+++||+|+|++|.... .+.+|..+|++|+++++|||++
T Consensus 81 a~~~i~g~~~~~d~~~r~~~~~~~-~~~~~~~~k~~~~~~~~Gp~~v 126 (218)
T PF01557_consen 81 ALDAIAGYTPANDVTARDLQWRER-PGLPWIADKSFDGSLVLGPWVV 126 (218)
T ss_dssp HGGGEEEEEEEEEEEEHHHHHHHH-HTHSSHHHHSSTTCEEEEEEEE
T ss_pred HHHHhhEEeeecccchhhhhhhhh-cccchhhccCcCcceeeccccc
Confidence 999999999999999999998776 4558999999999999999984
No 12
>KOG2843 consensus Fumarylacetoacetase [Carbohydrate transport and metabolism]
Probab=99.56 E-value=1.6e-15 Score=120.86 Aligned_cols=93 Identities=28% Similarity=0.314 Sum_probs=81.5
Q ss_pred CCEEEecCCCCccCCCCcEeecC--------------CCCCcccceEEEEEECCC----CCCCCcccHhhhhceEeeEee
Q 032695 39 EPVLFLKPTSSYLGNGGTIEVPH--------------PLDSLHHEVELAVVIGQK----ARDVPETTAMDYVGGYAVALD 100 (135)
Q Consensus 39 ~P~~F~K~~~al~g~~~~i~~P~--------------~~~~ld~E~ELavVIGk~----~~~i~~~~A~~~I~Gytv~nD 100 (135)
-|+-|...+++++-.|.+|++|- .+..+|+|.|+|+.||-. +..|+.++|+++|+|+++.||
T Consensus 155 LPVGYHGRASSvVVSGTpirRP~GQtkpddae~PvfGacKLlDfELEMAFFvGgpgN~LGepipi~kA~~~iFG~vLMND 234 (420)
T KOG2843|consen 155 LPVGYHGRASSVVVSGTPIRRPLGQTKPDDAEKPVFGACKLLDFELEMAFFVGGPGNQLGEPIPIDKAWKNIFGFVLMND 234 (420)
T ss_pred ccccccCceeeEEEcCCcccCcccCCCCCCCCCCcccchhhccceeeeeeEecCCccccCCccchhhhhhheeeEEEecc
Confidence 59999999999999999999984 256789999999999955 567999999999999999999
Q ss_pred cchHHHHHhhhhcCCCcccccCCCCCCccCccee
Q 032695 101 MTAREIQSSAKSAGLPWTVAKGQDTFTPISSVVR 134 (135)
Q Consensus 101 ~T~Rd~q~~~~~~g~~w~~~K~~d~f~plGP~i~ 134 (135)
||+||+|+.+.-.-+| +.+|+|-+ .++||++
T Consensus 235 WSARDIQkWEYVPLGP-FlaKsfgT--TvSPWVV 265 (420)
T KOG2843|consen 235 WSARDIQKWEYVPLGP-FLAKSFGT--TVSPWVV 265 (420)
T ss_pred cchhhcccceeecccc-hhhhhccc--cccccee
Confidence 9999999987654444 68999987 7999986
No 13
>COG3970 Fumarylacetoacetate (FAA) hydrolase family protein [General function prediction only]
Probab=98.98 E-value=5.5e-10 Score=89.85 Aligned_cols=83 Identities=20% Similarity=0.336 Sum_probs=70.0
Q ss_pred CCEEEecC-CCCccCCCCcEeecCCCCCcccceEEEEEECCCCCCCCcccHhhhhceEeeEeecchHHHHHhhhhcCCCc
Q 032695 39 EPVLFLKP-TSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAKSAGLPW 117 (135)
Q Consensus 39 ~P~~F~K~-~~al~g~~~~i~~P~~~~~ld~E~ELavVIGk~~~~i~~~~A~~~I~Gytv~nD~T~Rd~q~~~~~~g~~w 117 (135)
.+-+|+|. +.+-+|+|+.|-+...++....|.|+++++...++ |.|||++||+++||+..+.. .-.
T Consensus 168 daEIFtKaqpmssVG~Ga~Igv~~~S~WnnPEPEvvl~~dS~G~----------I~GaTlgnDVnlRD~Egrsa---LlL 234 (379)
T COG3970 168 DAEIFTKAQPMSSVGHGAQIGVRPDSEWNNPEPEVVLAVDSSGK----------IVGATLGNDVNLRDFEGRSA---LLL 234 (379)
T ss_pred ChhheecCCccccccccceeeeccccccCCCCCeEEEEEcCCCc----------EEeeeecCcccccccccccc---hhc
Confidence 46778884 57779999999998888889999999999999998 99999999999999976531 223
Q ss_pred ccccCCCCCCccCccee
Q 032695 118 TVAKGQDTFTPISSVVR 134 (135)
Q Consensus 118 ~~~K~~d~f~plGP~i~ 134 (135)
.++|...++|.+||||.
T Consensus 235 ~kaKdnnasCaiGPfIr 251 (379)
T COG3970 235 SKAKDNNASCAIGPFIR 251 (379)
T ss_pred ccccccCccccccceEE
Confidence 46788889999999985
No 14
>TIGR03220 catechol_dmpE 2-oxopent-4-enoate hydratase. Members of this protein family are 2-oxopent-4-enoate hydratase, which is also called 2-hydroxypent-2,4-dienoate hydratase. It is closely related to another gene found in the same operon, 4-oxalocrotonate decarboxylase, with which it interacts closely.
Probab=98.50 E-value=4e-07 Score=71.84 Aligned_cols=95 Identities=19% Similarity=0.162 Sum_probs=67.5
Q ss_pred EEEccCcHHHHHHhCCCCCCCCEEEecCCCCccCCCCcEeecCCCCCcccceEEEEEECCCC--CCCCcccHh---hhhc
Q 032695 19 VAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKA--RDVPETTAM---DYVG 93 (135)
Q Consensus 19 ~~~g~NY~~h~~e~~~~~p~~P~~F~K~~~al~g~~~~i~~P~~~~~ld~E~ELavVIGk~~--~~i~~~~A~---~~I~ 93 (135)
|-+|+.-+.-.+.++.. .|.+=.-..+.+..++.++..+... ..++|+||++||||++ ++++++|++ ++|+
T Consensus 55 ~K~g~ts~~~~~~~gv~---~P~~g~l~~~~~~~~g~~i~~~~~~-~~~vE~Elafvlg~~l~~~~~t~~ev~~ai~~v~ 130 (255)
T TIGR03220 55 KKIGVTSKAVMNMLGVY---QPDFGYLLDGMVYNEGEPIPTDTLI-QPKAEGEIAFVLKKDLMGPGVTAADVLAATECVM 130 (255)
T ss_pred EEEecCCHHHHHHhCCC---CCcEEEeeccccccCCCeeccccCc-cceeeeEEEEEECCCCCCCCCCHHHHHHHHhhee
Confidence 44665555555566654 4543333345566778888888653 7999999999999996 689999766 5677
Q ss_pred eEeeEeecchHHHHHhhhhcCCCcccccC
Q 032695 94 GYAVALDMTAREIQSSAKSAGLPWTVAKG 122 (135)
Q Consensus 94 Gytv~nD~T~Rd~q~~~~~~g~~w~~~K~ 122 (135)
++.-.||.+.||++.. .+|..+|+
T Consensus 131 ~~~El~D~r~~~~~~~-----~~~~~Ad~ 154 (255)
T TIGR03220 131 PCFEIVDSRIRDWKIK-----IQDTVADN 154 (255)
T ss_pred eeEEEcccccccCCCC-----ccceeeec
Confidence 7777889999999642 25666765
No 15
>TIGR02312 HpaH 2-oxo-hepta-3-ene-1,7-dioic acid hydratase. This model represents the enzyme which hydrates the double bond of 2-oxo-hepta-3-ene-1,7-dioic acid to form 4-hydroxy-2-oxo-heptane-1,7-dioic acid in the catabolism of 4-hydroxyphenylacetic acid. The gene for this enzyme is generally found adjacent to other genes of this pathway in an apparent operon.
Probab=97.85 E-value=8.9e-05 Score=59.01 Aligned_cols=102 Identities=21% Similarity=0.198 Sum_probs=68.9
Q ss_pred EEEccCcHHHHHHhCCCCCCCCEEEecCCCCccCCCCcEeecCCCCCcccceEEEEEECCCC--CCCCcccHhhhhceEe
Q 032695 19 VAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKA--RDVPETTAMDYVGGYA 96 (135)
Q Consensus 19 ~~~g~NY~~h~~e~~~~~p~~P~~F~K~~~al~g~~~~i~~P~~~~~ld~E~ELavVIGk~~--~~i~~~~A~~~I~Gyt 96 (135)
|-+|+.-..-.+.++.. +|.+=.-..+.+...+..+... ...+.-.|+||++++||+. .+.+.+|++++|.++.
T Consensus 60 ~KvG~ts~a~q~~~gv~---~P~~g~l~~~~~~~~g~~~~~~-~~~~p~vE~Eiaf~l~~~l~~~~~t~~ev~~ai~~v~ 135 (267)
T TIGR02312 60 HKIGLTSRAMQQASNID---EPDYGVLLDDMFFEDGSTIPAD-RFIQPRVEVELAFVLKKDLEGPNVTIFDVLNATDYVV 135 (267)
T ss_pred EEEecCCHHHHHHcCCC---CCeeEEecCccccCCCCeeccc-cccccccceEEEEEECCCCCCCCCCHHHHHHHhheEE
Confidence 34555555544455543 4554444446666677766653 3345789999999999987 5789999999999999
Q ss_pred eEeecchHHHHHhhhhcCCCcccccCCCCCC
Q 032695 97 VALDMTAREIQSSAKSAGLPWTVAKGQDTFT 127 (135)
Q Consensus 97 v~nD~T~Rd~q~~~~~~g~~w~~~K~~d~f~ 127 (135)
.+.++..+.++...+..+.+| |.+|..+
T Consensus 136 paiEi~dsr~~~~~~~~~~~~---~~~d~iA 163 (267)
T TIGR02312 136 PALEIIDARIERVDPETGATR---KVFDTIS 163 (267)
T ss_pred eeEEEeeccccccccccCCcc---ccccEec
Confidence 999999998875433323223 4555543
No 16
>PRK11342 mhpD 2-keto-4-pentenoate hydratase; Provisional
Probab=97.51 E-value=0.00038 Score=55.14 Aligned_cols=85 Identities=20% Similarity=0.235 Sum_probs=69.1
Q ss_pred EEEccCcHHHHHHhCCCCCCCCEEEecCCCCccCCCCcEeecCCCCCcccceEEEEEECCCCC--CCCcccHhhhhceEe
Q 032695 19 VAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKAR--DVPETTAMDYVGGYA 96 (135)
Q Consensus 19 ~~~g~NY~~h~~e~~~~~p~~P~~F~K~~~al~g~~~~i~~P~~~~~ld~E~ELavVIGk~~~--~i~~~~A~~~I~Gyt 96 (135)
|.+|++.+...+.++...|-...+|. +.+..++..+.+... .....|+||++++||+.. +++++|+.++|.++.
T Consensus 59 ~K~G~ts~~~~~~~gv~~P~~g~l~~---~~~~~~g~~~~~~~~-~~~~iE~Eiaf~l~~dl~~~~~t~~ev~~ai~~v~ 134 (262)
T PRK11342 59 RKVGLTHPKVQQQLGVDQPDFGTLFA---DMCYGDNEIIPFSRV-LQPRIEAEIALVLNRDLPATDITFDELYNAIEWVL 134 (262)
T ss_pred EEecCCCHHHHHHhCCCCCCcccccc---hhhcCCCCeeccccc-CCcceeeEEEEEECCCCCCCCCCHHHHHHhhceEe
Confidence 78999999988889887777666665 456667777766544 357889999999999864 689999999999999
Q ss_pred eEeecchHHHH
Q 032695 97 VALDMTAREIQ 107 (135)
Q Consensus 97 v~nD~T~Rd~q 107 (135)
.+.++..+.++
T Consensus 135 paiEivdsr~~ 145 (262)
T PRK11342 135 PALEVVGSRIR 145 (262)
T ss_pred eeEEecCCccc
Confidence 99999877664
No 17
>COG3802 GguC Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.61 E-value=0.0022 Score=51.20 Aligned_cols=82 Identities=18% Similarity=0.254 Sum_probs=62.3
Q ss_pred CCEEEecCC-CCccCCCCcEeecCCCCCcccceEEE--EEECCCCCCCCcccHhhhhceEeeEeecchHHHHHhhhhcCC
Q 032695 39 EPVLFLKPT-SSYLGNGGTIEVPHPLDSLHHEVELA--VVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAKSAGL 115 (135)
Q Consensus 39 ~P~~F~K~~-~al~g~~~~i~~P~~~~~ld~E~ELa--vVIGk~~~~i~~~~A~~~I~Gytv~nD~T~Rd~q~~~~~~g~ 115 (135)
+|-+|+|.. +.++.||.++..|+....=--|.||+ .+||.++.- |-.||+++|.+|..-..+.+ +
T Consensus 140 QPEWFyKG~G~~~vapGa~l~sPaFAedggEEpEiaGiYlig~dg~p--------~RlGfal~NEfSDHvtEr~N---Y- 207 (333)
T COG3802 140 QPEWFYKGDGTVAVAPGAPLPSPAFAEDGGEEPEIAGIYLIGDDGTP--------YRLGFALANEFSDHVTERVN---Y- 207 (333)
T ss_pred CcceEEeCCCcEEecCCCCCCChhhhhccCCCceeeEEEEECCCCce--------eEEeeeecchhhhhhhhccc---e-
Confidence 799999865 77889999999998766666788886 489988763 56799999999987665432 2
Q ss_pred CcccccCCCCCCccCcce
Q 032695 116 PWTVAKGQDTFTPISSVV 133 (135)
Q Consensus 116 ~w~~~K~~d~f~plGP~i 133 (135)
.+++.|.=..|++||-|
T Consensus 208 -L~LAHSKLR~as~GPEl 224 (333)
T COG3802 208 -LYLAHSKLRNASFGPEL 224 (333)
T ss_pred -EEeehhhhhccccCcce
Confidence 23555556668899865
No 18
>COG3971 2-keto-4-pentenoate hydratase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=93.12 E-value=0.1 Score=41.57 Aligned_cols=78 Identities=23% Similarity=0.287 Sum_probs=59.9
Q ss_pred EEccCcHHHHHHhCCCCCCCCEEEecCCCCccCCCCcEeecCCCCCcccceEEEEEECCCC--CCCCcccHhhhhceEee
Q 032695 20 AVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKA--RDVPETTAMDYVGGYAV 97 (135)
Q Consensus 20 ~~g~NY~~h~~e~~~~~p~~P~~F~K~~~al~g~~~~i~~P~~~~~ld~E~ELavVIGk~~--~~i~~~~A~~~I~Gytv 97 (135)
=+|+.-+.+-+.++.+.|..=.+|-+ -....|.+|+.+.... ..+|+||+++++|+. -++|..|+++||.=+..
T Consensus 61 Kvglts~a~q~~~~v~epd~G~lfd~---m~f~eg~~ip~~r~~~-prvE~EiafvL~kdlpa~~~T~~d~l~a~~~v~p 136 (264)
T COG3971 61 KVGLTSPAMQQQLGVDEPDYGTLFDD---MAFNEGADIPFSRFIQ-PRVEVEIAFVLKKDLPAPDCTVADVLNATDYVLP 136 (264)
T ss_pred eeccCCHHHHHHcCCCCcchhhhhHh---HHhhcCCCCCcccccc-eeeeeeEEEEecCCCCCCCCCHHHHHHHHHhhhh
Confidence 46888888888888876666555543 3455677777766543 489999999999995 48999999999987777
Q ss_pred Eeec
Q 032695 98 ALDM 101 (135)
Q Consensus 98 ~nD~ 101 (135)
+..+
T Consensus 137 alEl 140 (264)
T COG3971 137 ALEL 140 (264)
T ss_pred hhhh
Confidence 7766
No 19
>TIGR03218 catechol_dmpH 4-oxalocrotonate decarboxylase. Members of this protein family are 4-oxalocrotonate decarboxylase. Note that this protein, as characterized (indirectly) in Pseudomonas sp. strain CF600, was inactive except when coexpressed with DmpE, 2-oxopent-4-enoate hydratase, a homologous protein from the same operon. Both of these enzymes are active in the degradation of catechol, a common intermediate in the degradation of aromatic compounds such as benzoate, toluene, phenol, dimethylphenol (dmp), salicylate, etc.
Probab=89.67 E-value=2.2 Score=33.89 Aligned_cols=67 Identities=15% Similarity=0.082 Sum_probs=45.6
Q ss_pred CCEEEecCCCCccCCCCcEeecCCCCCcccceEEEEEECCCC--CCCCcccHhhhhceEeeEeecchHHH
Q 032695 39 EPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKA--RDVPETTAMDYVGGYAVALDMTAREI 106 (135)
Q Consensus 39 ~P~~F~K~~~al~g~~~~i~~P~~~~~ld~E~ELavVIGk~~--~~i~~~~A~~~I~Gytv~nD~T~Rd~ 106 (135)
+|++=.-..+.+...+..+..... .+.-.|+||++++|++. .+.+.+|..++|..+..+..+-..-+
T Consensus 80 ~P~~g~l~~~~~~~~g~~~~~~~~-~~p~vE~Eiaf~l~~~l~~~~~t~~ev~~ai~~v~paiEivdsR~ 148 (263)
T TIGR03218 80 TPVFGFLVDYFSVPDGGEIKTSEL-IHPKVEAEIAFVTKAPLKGPGCHIGDVLAATDFVMPAVEVIDSRY 148 (263)
T ss_pred CCeeeeecccccccCCCeeccccc-CcceeeeEEEEEECCCCCCCCCCHHHHHHhhcEEEeeEEeccCcc
Confidence 344322233444445655554332 34689999999999976 56889999999999998888755433
No 20
>PF12596 Tnp_P_element_C: 87kDa Transposase; InterPro: IPR022242 This domain family is found in eukaryotes, and is typically between 78 and 110 amino acids in length. The family is found in association with PF05485 from PFAM. There are two completely conserved residues (D and G) that may be functionally important. This family is an 87kDa transposase protein which catalyses both the precise and imprecise excision of a nonautonomous P transposable element.
Probab=47.49 E-value=3.3 Score=28.81 Aligned_cols=15 Identities=27% Similarity=0.689 Sum_probs=12.5
Q ss_pred CCcccHhhhhceEee
Q 032695 83 VPETTAMDYVGGYAV 97 (135)
Q Consensus 83 i~~~~A~~~I~Gytv 97 (135)
.-.++|++||+||++
T Consensus 73 e~e~d~l~YiaGyVa 87 (106)
T PF12596_consen 73 EIEEDGLEYIAGYVA 87 (106)
T ss_pred hhHHHHHHHHHHHHH
Confidence 367899999999973
No 21
>PF08965 DUF1870: Domain of unknown function (DUF1870); InterPro: IPR015060 This family consist of hypothetical bacterial proteins. ; PDB: 1S4K_A.
Probab=46.58 E-value=6.9 Score=27.72 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=13.6
Q ss_pred CCcccHhhhhceEeeEeecchHHHHHhh
Q 032695 83 VPETTAMDYVGGYAVALDMTAREIQSSA 110 (135)
Q Consensus 83 i~~~~A~~~I~Gytv~nD~T~Rd~q~~~ 110 (135)
.+.+||..|| ++|+++|.||..+
T Consensus 15 lt~~EaA~~I-----a~~v~~~tWq~WE 37 (118)
T PF08965_consen 15 LTVEEAAYYI-----AQDVSSRTWQQWE 37 (118)
T ss_dssp --HHHHHHHT-----SSS--HHHHHHHH
T ss_pred CCHHHHHHHH-----HccCCHHHHHHHH
Confidence 4556666554 6789999999854
No 22
>PF08331 DUF1730: Domain of unknown function (DUF1730); InterPro: IPR013542 This domain of unknown function occurs in iron-sulphur cluster-binding proteins together with the 4Fe-4S binding domain (IPR001450 from INTERPRO).
Probab=39.09 E-value=22 Score=22.80 Aligned_cols=19 Identities=16% Similarity=0.398 Sum_probs=16.3
Q ss_pred hhcccCCCcEEEEccCcHH
Q 032695 9 QKLIQAGTKIVAVGRNYAA 27 (135)
Q Consensus 9 ~~~l~~~~ki~~~g~NY~~ 27 (135)
..+++....||++++||..
T Consensus 5 ~~~~p~arSvIv~a~~Y~~ 23 (78)
T PF08331_consen 5 RKLLPGARSVIVLAFPYYP 23 (78)
T ss_pred HHhCCCCcEEEEEEccCCC
Confidence 4677888999999999986
No 23
>PF11010 DUF2848: Protein of unknown function (DUF2848); InterPro: IPR021269 This bacterial family of proteins has no known function.
Probab=35.78 E-value=96 Score=23.82 Aligned_cols=68 Identities=24% Similarity=0.319 Sum_probs=45.6
Q ss_pred HHHHH---hCCCCC-CCCEEEecCCCCccCCCCcEeecCCCCCcccceEEEEEECCCCCCCCcccHhhhhceEeeEeecc
Q 032695 27 AHAKE---LGNAVP-KEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMT 102 (135)
Q Consensus 27 ~h~~e---~~~~~p-~~P~~F~K~~~al~g~~~~i~~P~~~~~ld~E~ELavVIGk~~~~i~~~~A~~~I~Gytv~nD~T 102 (135)
.|++| +|...| ..|.+|...++-+ ...+.|.+.. ..---|+|-+++..+... | .+++.|=|
T Consensus 13 ~HI~EL~~lGVp~Ps~vP~~Y~v~~~ll-tq~~~i~v~g--~~tSGE~E~vli~~~g~~---------~---v~vgSDHT 77 (194)
T PF11010_consen 13 HHIEELAALGVPPPSSVPLFYRVAPYLL-TQADEIEVLG--EDTSGEAEPVLIRHGGEL---------Y---VGVGSDHT 77 (194)
T ss_pred HHHHHHHHhCCCCCCCCCEEEEechhhC-cccCeEEecc--CCCCceEEEEEEEECCeE---------E---EEecCCCc
Confidence 46655 476666 5799998886655 4555566543 245678999777654433 2 38999999
Q ss_pred hHHHHHh
Q 032695 103 AREIQSS 109 (135)
Q Consensus 103 ~Rd~q~~ 109 (135)
.|++...
T Consensus 78 DR~lE~~ 84 (194)
T PF11010_consen 78 DRKLEAY 84 (194)
T ss_pred cchhhhc
Confidence 9998643
No 24
>cd02134 NusA_KH NusA_K homology RNA-binding domain (KH). NusA is an essential multifunctional transcription elongation factor that is universally conserved among prokaryotes and archaea. NusA anti-termination function plays an important role in the expression of ribosomal rrn operons. During transcription of many other genes, NusA-induced RNAP pausing provides a mechanism for synchronizing transcription and translation . The N-terminal RNAP-binding domain (NTD) is connected through a flexible hinge helix to three globular domains, S1, KH1 and KH2. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices.
Probab=35.30 E-value=13 Score=22.73 Aligned_cols=16 Identities=25% Similarity=0.534 Sum_probs=13.6
Q ss_pred ceEEEEEECCCCCCCC
Q 032695 69 EVELAVVIGQKARDVP 84 (135)
Q Consensus 69 E~ELavVIGk~~~~i~ 84 (135)
+.+++.+|||.|+||.
T Consensus 33 ~~~~~~aIGk~G~nI~ 48 (61)
T cd02134 33 DDQLGLAIGKGGQNVR 48 (61)
T ss_pred cccceeeECCCCHHHH
Confidence 3589999999999874
No 25
>cd02414 jag_KH jag_K homology RNA-binding domain. The KH domain is found in proteins homologous to the Bacillus subtilis protein Jag, which is associated with SpoIIIJ and is necessary for the third stage of sporulation. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=27.64 E-value=29 Score=22.02 Aligned_cols=20 Identities=20% Similarity=0.760 Sum_probs=15.6
Q ss_pred EEEEEECCCCCCCCcccHhhhhc
Q 032695 71 ELAVVIGQKARDVPETTAMDYVG 93 (135)
Q Consensus 71 ELavVIGk~~~~i~~~~A~~~I~ 93 (135)
.++.+|||.|+.+ +|+.|+.
T Consensus 34 ~~g~LIGk~G~tL---~AlQ~L~ 53 (77)
T cd02414 34 DIGLLIGKRGKTL---DALQYLA 53 (77)
T ss_pred CCCeEECCCCccH---HHHHHHH
Confidence 5689999999976 6677653
No 26
>PRK01064 hypothetical protein; Provisional
Probab=25.32 E-value=37 Score=22.15 Aligned_cols=15 Identities=20% Similarity=0.592 Sum_probs=12.4
Q ss_pred eEEEEEECCCCCCCC
Q 032695 70 VELAVVIGQKARDVP 84 (135)
Q Consensus 70 ~ELavVIGk~~~~i~ 84 (135)
..++.+|||.|+++.
T Consensus 39 ~D~g~vIGk~G~~i~ 53 (78)
T PRK01064 39 PDIGKIIGKEGRTIK 53 (78)
T ss_pred ccceEEECCCCccHH
Confidence 357999999999873
No 27
>TIGR03882 cyclo_dehyd_2 bacteriocin biosynthesis cyclodehydratase domain. This model describes a ThiF-like domain of a fusion protein found in clusters associated with the production of TOMMs (thiazole/oxazole-modified microcins), small bacteriocins with characteristic heterocycle modifications. This domain is presumed to act as a cyclodehydratase, as do members of the SagC family modeled by TIGR03603.
Probab=23.91 E-value=69 Score=24.07 Aligned_cols=27 Identities=26% Similarity=0.411 Sum_probs=22.2
Q ss_pred HhhhhcCCCcccccCCCCCCccCccee
Q 032695 108 SSAKSAGLPWTVAKGQDTFTPISSVVR 134 (135)
Q Consensus 108 ~~~~~~g~~w~~~K~~d~f~plGP~i~ 134 (135)
+.....+.||...|-.++..-+||++.
T Consensus 157 ~~~l~~~~~~l~v~~~~~~~~~gp~~~ 183 (193)
T TIGR03882 157 QRALAAGRPWLLVKPGGVQPWIGPLFK 183 (193)
T ss_pred HHHHHcCCceEEEEeCCceEEECCeec
Confidence 334557899999999999999999763
No 28
>PF08643 DUF1776: Fungal family of unknown function (DUF1776); InterPro: IPR013952 This is a fungal protein of unknown function. One of the proteins P32792 from SWISSPROT has been localised to the mitochondria [].
Probab=23.83 E-value=2.3e+02 Score=23.08 Aligned_cols=57 Identities=19% Similarity=0.216 Sum_probs=41.8
Q ss_pred ceEEEEEECCCCCCCCcccHhh-hhceEeeEeecchHHHHHhhhhcCCCcccccCCCC
Q 032695 69 EVELAVVIGQKARDVPETTAMD-YVGGYAVALDMTAREIQSSAKSAGLPWTVAKGQDT 125 (135)
Q Consensus 69 E~ELavVIGk~~~~i~~~~A~~-~I~Gytv~nD~T~Rd~q~~~~~~g~~w~~~K~~d~ 125 (135)
+-|.+||+|..-.-++...|+| +=.||+|..=++.-+..+.-...++++.+.-.+|.
T Consensus 2 R~evVvI~Gs~~~PltR~la~DLeRRGFIV~v~~~~~ed~~~ve~e~~~dI~~L~ld~ 59 (299)
T PF08643_consen 2 RKEVVVIAGSPHDPLTRSLALDLERRGFIVYVTVSSAEDEKYVESEDRPDIRPLWLDD 59 (299)
T ss_pred ceeEEEEECCCCCccHHHHHHHHhhCCeEEEEEeCCHHHHHHHHhccCCCCCCcccCC
Confidence 4589999999878888899998 67899999888776643322223366677777776
Done!