RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 032695
(135 letters)
>1saw_A Hypothetical protein FLJ36880; structural genomics,
fumarylacetoacetatehydrolase family, unknown function;
2.20A {Homo sapiens} SCOP: d.177.1.1
Length = 225
Score = 211 bits (539), Expect = 5e-71
Identities = 67/133 (50%), Positives = 89/133 (66%)
Query: 1 MATASSAVQKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVP 60
+ AS + + + G IV VGRNYA H +E+ +AV EPVLFLKP+++Y G I +P
Sbjct: 4 IMAASRPLSRFWEWGKNIVCVGRNYADHVREMRSAVLSEPVLFLKPSTAYAPEGSPILMP 63
Query: 61 HPLDSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAKSAGLPWTVA 120
+LHHE+EL VV+G++ R VPE AMDYVGGYA+ LDMTAR++Q K GLPWT+A
Sbjct: 64 AYTRNLHHELELGVVMGKRCRAVPEAAAMDYVGGYALCLDMTARDVQDECKKKGLPWTLA 123
Query: 121 KGQDTFTPISSVV 133
K P+S+ V
Sbjct: 124 KSFTASCPVSAFV 136
>3l53_A Putative fumarylacetoacetate isomerase/hydrolase; structural
genomics, PSI-2, protein structure initiative; HET: TAR;
2.10A {Oleispira antarctica} PDB: 3v77_A*
Length = 224
Score = 206 bits (527), Expect = 3e-69
Identities = 49/117 (41%), Positives = 68/117 (58%)
Query: 17 KIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVI 76
KIV VGRNYAAHAKEL N +P P+LF+KP SS + G +P S+HHE+E+A++I
Sbjct: 17 KIVCVGRNYAAHAKELNNPIPSSPILFIKPASSAVPFGPVFSIPKDQGSVHHELEIAILI 76
Query: 77 GQKARDVPETTAMDYVGGYAVALDMTAREIQSSAKSAGLPWTVAKGQDTFTPISSVV 133
G+ + + G + LD+T R++Q K G PW AK D P++ V
Sbjct: 77 GKALSRASTEQVAESIAGIGLGLDLTLRDVQDQLKEKGHPWERAKSFDGACPLTEFV 133
>3s52_A Putative fumarylacetoacetate hydrolase family Pro; csgid,
structural genomics, center for structural genomics O
infectious diseases; 2.01A {Yersinia pestis} PDB: 1nr9_A
Length = 221
Score = 204 bits (521), Expect = 3e-68
Identities = 51/117 (43%), Positives = 68/117 (58%)
Query: 17 KIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVI 76
K+V VG NYA H KE+G+ EPVLF+KP ++ + +P S+HHE+ELAV+I
Sbjct: 21 KVVCVGSNYAEHIKEMGSTASVEPVLFIKPETALCDIRQPVSIPKDFGSVHHEIELAVLI 80
Query: 77 GQKARDVPETTAMDYVGGYAVALDMTAREIQSSAKSAGLPWTVAKGQDTFTPISSVV 133
G + E + GY VALD+T RE+Q+ K AG PW AK D PIS +
Sbjct: 81 GTPLKQASEDRVARAIAGYGVALDLTLRELQAGFKKAGQPWEKAKAFDGSCPISGFI 137
>1nkq_A Hypothetical 28.8 kDa protein in PSD1-SKO1 intergenic region;
dimer, PSI, protein structure initiative; 2.20A
{Saccharomyces cerevisiae} SCOP: d.177.1.1
Length = 259
Score = 187 bits (476), Expect = 5e-61
Identities = 58/152 (38%), Positives = 83/152 (54%), Gaps = 27/152 (17%)
Query: 9 QKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDS--- 65
++A KI+ +GRNYAAH KEL N+ PK+P FLKPTSS + + V +
Sbjct: 3 YNYLKAARKIICIGRNYAAHIKELNNSTPKQPFFFLKPTSSIVTPLSSSLVKTTRPANST 62
Query: 66 ---------------------LHHEVELAVVIGQKARDVPETT---AMDYVGGYAVALDM 101
+HHE+ELA+++ + +V + D + G A+ALD+
Sbjct: 63 FNGLNEDGTNPGPIFIPRGVKVHHEIELALIVSKHLSNVTKMKPEEVYDSISGVALALDL 122
Query: 102 TAREIQSSAKSAGLPWTVAKGQDTFTPISSVV 133
TAR +Q AK GLPWT++KG DTF PIS++V
Sbjct: 123 TARNVQDEAKKKGLPWTISKGFDTFMPISAIV 154
>1wzo_A HPCE; structural genomics, riken structural genomics/proteom
initiative, RSGI, NPPSFA, isomerase; 1.90A {Thermus
thermophilus}
Length = 246
Score = 167 bits (426), Expect = 1e-53
Identities = 50/114 (43%), Positives = 69/114 (60%), Gaps = 3/114 (2%)
Query: 16 TKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVV 75
KI+ V NYA HA+ELG + P+EP LF KP +S L + G + P +H+EVELAVV
Sbjct: 44 GKILGVALNYADHAEELGLSRPEEPALFWKPNTSLLPHKGVVLYPKGARFVHYEVELAVV 103
Query: 76 IGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAKSAGLPWTVAKGQDTFTPI 129
+G+ + V A+DYV GY +A D+ AR+ + P AKG+DTF P+
Sbjct: 104 VGRPMKRVRAKDALDYVLGYTIANDLVARDYV---TNTFRPPIRAKGRDTFLPL 154
>3rr6_A Putative uncharacterized protein; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid; 1.58A {Mycobacterium abscessus} PDB: 3qdf_A
Length = 265
Score = 165 bits (419), Expect = 2e-52
Identities = 52/116 (44%), Positives = 75/116 (64%), Gaps = 4/116 (3%)
Query: 14 AGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELA 73
+K+VA+G+NYAAHA E+G P+ PV+F+KP +S +G G I++P +HHE ELA
Sbjct: 63 LASKVVAMGKNYAAHAAEMGGDPPESPVIFIKPNTSIIGPGLPIQLPPSATEVHHEGELA 122
Query: 74 VVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAKSAGLPWTVAKGQDTFTPI 129
+VIG+ +DVP A + + GY + D++AR+ Q A WT AKG DTF P+
Sbjct: 123 IVIGRPCKDVPAARAAENILGYTIGNDVSARDHQ----RADGQWTRAKGHDTFCPL 174
>1gtt_A 4-hydroxyphenylacetate degradation bifunctional
isomerase/decarboxylase; lyase, bifunctional enzyme,
multifunctional enzyme decarboxylase; 1.7A {Escherichia
coli} SCOP: d.177.1.1 d.177.1.1 PDB: 1i7o_A
Length = 429
Score = 166 bits (422), Expect = 5e-51
Identities = 45/113 (39%), Positives = 66/113 (58%), Gaps = 3/113 (2%)
Query: 17 KIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVI 76
+ A+G NYA HA EL P+EP++FLK ++ G+ T P+ ++ +H+E EL VVI
Sbjct: 224 TLFALGLNYADHASELEFKPPEEPLVFLKAPNTLTGDNQTSVRPNNIEYMHYEAELVVVI 283
Query: 77 GQKARDVPETTAMDYVGGYAVALDMTAREIQSSAKSAGLPWTVAKGQDTFTPI 129
G++AR+V E AMDYV GY V D R+ ++ P K +D TP+
Sbjct: 284 GKQARNVSEADAMDYVAGYTVCNDYAIRDYL---ENYYRPNLRVKSRDGLTPM 333
Score = 149 bits (378), Expect = 1e-44
Identities = 35/122 (28%), Positives = 54/122 (44%), Gaps = 14/122 (11%)
Query: 16 TKIVAVGRNYAAHAKELGNA--------VPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLH 67
I AV N+ + A PK V F+KP ++ +G G I P + +
Sbjct: 3 GTIFAVALNHRSQLDAWQEAFQQSPYKAPPKTAVWFIKPRNTVIGCGEPIPFP-QGEKVL 61
Query: 68 HEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAKSAGLPWTVAKGQDTFT 127
+A+++G+ A V E A +Y+ GYA+A D++ E P AK +D F
Sbjct: 62 SGATVALIVGKTATKVREEDAAEYIAGYALANDVSLPEES-----FYRPAIKAKCRDGFC 116
Query: 128 PI 129
PI
Sbjct: 117 PI 118
>2dfu_A Probable 2-hydroxyhepta-2,4-diene-1,7-dioate ISOM;
2-hydroxyhepta-2,4-diene-1,7-dioate isomerase,
structural GE NPPSFA; 2.20A {Thermus thermophilus}
Length = 264
Score = 152 bits (386), Expect = 3e-47
Identities = 55/127 (43%), Positives = 73/127 (57%), Gaps = 17/127 (13%)
Query: 16 TKIVAVGRNYAAHAKELGN----AVPKEPVLFLKPTSSYLGNGGTI-------EVPHPLD 64
TKIV VGRNY H +E+G+ +PKEP LFLK ++ G VP+P
Sbjct: 48 TKIVCVGRNYREHIREMGHDFGEDLPKEPGLFLKGPNALARPGNPRDPWGTAEPVPYPFF 107
Query: 65 S--LHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAKSAGLPWTVAKG 122
+ LH+E ELAVV+G + R VP A+D+V GY VA+D+TAR++Q L W AK
Sbjct: 108 TEELHYEGELAVVVGDRMRHVPPEKALDHVLGYTVAVDITARDVQKK----DLQWVRAKS 163
Query: 123 QDTFTPI 129
D F P+
Sbjct: 164 ADKFLPL 170
>3r6o_A 2-hydroxyhepta-2,4-diene-1, 7-dioateisomerase; ssgcid, struc
genomics, seattle structural genomics center for
infectious isomerase; 1.95A {Mycobacterium abscessus}
Length = 329
Score = 136 bits (345), Expect = 2e-40
Identities = 36/118 (30%), Positives = 60/118 (50%), Gaps = 5/118 (4%)
Query: 17 KIVAVGRNYAAHAK-ELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVV 75
+++A+G NY H+ + +PV+F+K +S G + P +L +E+E+AVV
Sbjct: 105 QVIALGFNYPTHSDTDSPLPKMADPVVFMKSPTSISGPRDAVIAPRTSHALDYEIEIAVV 164
Query: 76 IGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAKSAGLP----WTVAKGQDTFTPI 129
IG+ + + A+ +V GY +A D+TAR++ G P KG TF P
Sbjct: 165 IGKPGYRIERSQAIKHVAGYMLANDITARDVALPFGFGGSPLQAQVVRGKGYPTFCPT 222
>2q18_X 2-keto-3-deoxy-D-arabinonate dehydratase; FAH-family fold, lyase;
2.10A {Sulfolobus solfataricus} PDB: 2q19_X 2q1a_X
2q1c_X 2q1d_X 3bqb_A
Length = 293
Score = 108 bits (272), Expect = 4e-30
Identities = 23/129 (17%), Positives = 42/129 (32%), Gaps = 29/129 (22%)
Query: 17 KIVAVGRNYAAHAKELGN---------------AVPKEPVLFLKPT-SSYLGNGGTIEVP 60
++ G +Y + P +F K T + +G+G I V
Sbjct: 75 EVWGSGISYEMARERYSEENVAKILGKTIYEKVYDAVRPEIFFKATPNRCVGHGEAIAVR 134
Query: 61 HPLDSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAKSAGLPWTVA 120
+ E ELAVV+ + + GY + D++AR+++ L +
Sbjct: 135 SDSEWTLPEPELAVVLDSNGK----------ILGYTIMDDVSARDLE---AENPLYLPQS 181
Query: 121 KGQDTFTPI 129
K
Sbjct: 182 KIYAGCCAF 190
>3lzk_A Fumarylacetoacetate hydrolase family protein; structural genomics,
PSI-2, protein structure initiative; 1.90A
{Sinorhizobium meliloti}
Length = 359
Score = 104 bits (261), Expect = 4e-28
Identities = 21/120 (17%), Positives = 43/120 (35%), Gaps = 8/120 (6%)
Query: 17 KIVAVGRNYAAHAK--------ELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHH 68
A G Y H + E+ + +P+++ + S+LG I + +
Sbjct: 100 FQWADGSAYVNHVELVRKARNAEMPASFWTDPLIYQGGSDSFLGPRDPILMADDAWGIDM 159
Query: 69 EVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAKSAGLPWTVAKGQDTFTP 128
E E AV++ A + + D++ R + + G + +K F+P
Sbjct: 160 EGEAAVIVDDVPMGATLDEAKAAIRLVMLVNDVSLRGLIPGELAKGFGFYQSKPSSAFSP 219
>1hyo_A Fumarylacetoacetate hydrolase; beta-sandwich roll; HET: HBU; 1.30A
{Mus musculus} SCOP: b.34.8.1 d.177.1.1 PDB: 1qcn_A
2hzy_A* 1qco_A 1qqj_A
Length = 421
Score = 63.2 bits (153), Expect = 7e-13
Identities = 29/130 (22%), Positives = 46/130 (35%), Gaps = 20/130 (15%)
Query: 21 VGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPH--------------PLDSL 66
VG + L PV + SS + +G I P L
Sbjct: 139 VGIMFRGKENALLPNWLHLPVGYHGRASSIVVSGTPIRRPMGQMRPDNSKPPVYGACRLL 198
Query: 67 HHEVELAVVIGQK---ARDVPETTAMDYVGGYAVALDMTAREIQSSAKSAGLPWTVAKGQ 123
E+E+A +G +P + A +++ G + D +AR+IQ +P G+
Sbjct: 199 DMELEMAFFVGPGNRFGEPIPISKAHEHIFGMVLMNDWSARDIQQWEY---VPLGPFLGK 255
Query: 124 DTFTPISSVV 133
T IS V
Sbjct: 256 SFGTTISPWV 265
>4dw8_A Haloacid dehalogenase-like hydrolase; HAD, putative phosphatase,
enzyme function initiative, EFI, structural genomics;
1.50A {Bacteroides thetaiotaomicron} PDB: 3niw_A 4dwo_A
Length = 279
Score = 32.1 bits (74), Expect = 0.031
Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 12/55 (21%)
Query: 7 AVQKLIQAGTKIV-AVGRNYAA---HAKELGNAVPKEPVLFLKPTSSYLGNGGTI 57
+ ++ + G ++V A GR A EL +L SY NGG I
Sbjct: 30 TLIRIQEQGIRLVLASGRPTYGIVPLANELRMNEFGGFIL------SY--NGGEI 76
>3mpo_A Predicted hydrolase of the HAD superfamily; SGX, PSI, structural
genomics, protein structure initiative; 2.90A
{Lactobacillus brevis}
Length = 279
Score = 31.0 bits (71), Expect = 0.084
Identities = 10/56 (17%), Positives = 18/56 (32%), Gaps = 12/56 (21%)
Query: 7 AVQKLIQAGTKIV-AVGRNYAA---HAKELGNAVPKEPVLFLKPTSSYLGNGGTIE 58
AVQ G K+V GR + + + + ++ NG +
Sbjct: 30 AVQAAKAQGIKVVLCTGRPLTGVQPYLDAMDIDGDDQYAI------TF--NGSVAQ 77
>1rkq_A Hypothetical protein YIDA; two domain structure with beta-alpha
sandwich. stucture contains A magnesium ION., PSI,
protein structure initiative; 1.40A {Escherichia coli}
SCOP: c.108.1.10
Length = 282
Score = 31.0 bits (71), Expect = 0.096
Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 12/55 (21%)
Query: 7 AVQKLIQAGTKIV-AVGRNYAA---HAKELGNAVPKEPVLFLKPTSSYLGNGGTI 57
A+ G +V GR YA + KEL P + + +Y NG +
Sbjct: 30 AIAAARARGVNVVLTTGRPYAGVHNYLKELHMEQPGDYCI------TY--NGALV 76
>3pgv_A Haloacid dehalogenase-like hydrolase; structural genomics, joint
center for structural genomics, J protein structure
initiative; HET: EPE; 2.39A {Klebsiella pneumoniae
subsp}
Length = 285
Score = 28.7 bits (65), Expect = 0.58
Identities = 11/55 (20%), Positives = 19/55 (34%), Gaps = 15/55 (27%)
Query: 7 AVQKLIQAGTKIV-AVGRNYAA---HAKELGNAVPKEPVLFLKPTSSYLGNGGTI 57
++ L G V A GR+Y LG + ++ + NG +
Sbjct: 46 TLKLLTARGINFVFATGRHYIDVGQIRDNLGI---RSYMI------TS--NGARV 89
>1w6g_A Phenylethylamine oxidase; copper containing, metal-binding,
oxidoreductase, TPQ, quinone, holoenzyme; HET: TPQ GOL;
1.55A {Arthrobacter globiformis} SCOP: b.30.2.1
d.17.2.1 d.17.2.1 PDB: 1w6c_A* 1rjo_A* 2bt3_A* 2cfd_A*
2cfg_A* 2cfk_A* 2cfl_A* 2cfw_A* 2cg0_A* 2cg1_A* 1w4n_A*
1sih_A* 1sii_A* 1w5z_A* 3kii_A* 3kn4_A* 1iqy_A* 1avl_A*
1av4_A* 1iqx_A* ...
Length = 646
Score = 28.3 bits (62), Expect = 0.82
Identities = 8/39 (20%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
Query: 56 TIEVPHPLDSL-HHEVELAVVIGQKARDVPETTAMDYVG 93
TI+ P E+ I + A + + Y+G
Sbjct: 3 TIQTASPFRLASAGEISEVQGILRTAGLLGPEKRIAYLG 41
>2b30_A Pvivax hypothetical protein; SGPP, structural genomics, PSI,
protein structure initiative; 2.70A {Plasmodium vivax}
SCOP: c.108.1.10
Length = 301
Score = 27.6 bits (62), Expect = 1.2
Identities = 10/55 (18%), Positives = 19/55 (34%), Gaps = 9/55 (16%)
Query: 7 AVQKLIQAGTKIV-AVGRNYAA---HAKELGNAVPKEPVLFLKPTSSYLGNGGTI 57
A+++ I+ G + GR+ E K+ + P NG +
Sbjct: 53 AIKEAIEKGYMVSICTGRSKVGILSAFGEENL---KKMNFYGMPGVYI--NGTIV 102
>3dnp_A Stress response protein YHAX; structural PSI-2, protein structure
initiative, midwest center for STR genomics, MCSG,
unknown function; HET: MSE; 1.85A {Bacillus subtilis}
Length = 290
Score = 27.5 bits (62), Expect = 1.4
Identities = 8/55 (14%), Positives = 21/55 (38%), Gaps = 15/55 (27%)
Query: 7 AVQKLIQAGTKIV-AVGRNYAA---HAKELGNAVPKEPVLFLKPTSSYLGNGGTI 57
A++ + + G + R++ + AK L ++ ++ +G I
Sbjct: 31 AIEYVKKKGIYVTLVTNRHFRSAQKIAKSLKL---DAKLI------TH--SGAYI 74
>1ksi_A Copper amine oxidase; PEA seedling, oxidoreductase; HET: TPQ NAG;
2.20A {Pisum sativum} SCOP: b.30.2.1 d.17.2.1 d.17.2.1
PDB: 1w2z_A*
Length = 642
Score = 27.2 bits (59), Expect = 2.1
Identities = 9/30 (30%), Positives = 10/30 (33%), Gaps = 1/30 (3%)
Query: 59 VPHPLDSL-HHEVELAVVIGQKARDVPETT 87
V HPLD L E I Q +
Sbjct: 1 VQHPLDPLTKEEFLAVQTIVQNKYPISNNR 30
>1nrw_A Hypothetical protein, haloacid dehalogenase-like hydrolase;
structural genomics, PSI, protein structure initiative;
1.70A {Bacillus subtilis} SCOP: c.108.1.10
Length = 288
Score = 26.5 bits (59), Expect = 2.6
Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 15/55 (27%)
Query: 7 AVQKLIQAGTKIV-AVGRNYAA---HAKELGNAVPKEPVLFLKPTSSYLGNGGTI 57
A+++ + G ++V + GR + + LG K V+ S NG I
Sbjct: 29 ALRQAQRDGIEVVVSTGRAHFDVMSIFEPLGI---KTWVI------SA--NGAVI 72
>3iz5_J 60S ribosomal protein L12 (L11P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_J
Length = 166
Score = 26.6 bits (58), Expect = 2.7
Identities = 15/124 (12%), Positives = 38/124 (30%), Gaps = 13/124 (10%)
Query: 2 ATASSAV-QKLIQAGTKIVAVGRNYAAHAKELGNAVP---------KEPVLFLKPTSSYL 51
A+S++ K+ G +G + A + + ++ + + P+++ L
Sbjct: 22 VGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVSVVPSAAAL 81
Query: 52 GNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAK 111
E + + + ++ A + T +EI +
Sbjct: 82 VIKALKEPERDRKKVKNIKHSGNISLDDVIEIARIMRNRS---MAKEMAGTVKEILGTCV 138
Query: 112 SAGL 115
S G
Sbjct: 139 SVGC 142
>3hhd_A Fatty acid synthase; transferase, multienzyme, megasynthase, fatty
acid synthesis, acetylation, cytoplasm, fatty acid
biosynthesis, hydrolase; 2.15A {Homo sapiens} PDB:
2jfk_A* 2jfd_A
Length = 965
Score = 26.0 bits (58), Expect = 4.7
Identities = 13/70 (18%), Positives = 24/70 (34%), Gaps = 11/70 (15%)
Query: 39 EPVLFLKPTSSYLGNGGTIEV-PHPL------DSLHHEVELAVVIGQKARDVPET--TAM 89
PVLF + + +E+ PH L L + ++ + RD E +
Sbjct: 743 SPVLFQEALWHVPEHAVVLEIAPHALLQAVLKRGLKPSCTIIPLMKKDHRDNLEFFLAGI 802
Query: 90 D--YVGGYAV 97
++ G
Sbjct: 803 GRLHLSGIDA 812
>3gdm_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate
decarboxylase, K93R mutant, lyase, phosphoprotein; 1.60A
{Saccharomyces cerevisiae} PDB: 3gdl_A* 3gdk_A* 3gdt_A*
3gdr_A* 1dqw_A 1dqx_A*
Length = 267
Score = 25.8 bits (56), Expect = 5.4
Identities = 13/79 (16%), Positives = 25/79 (31%), Gaps = 1/79 (1%)
Query: 18 IVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIG 77
++ EL A+ + LK L + PL +L + +
Sbjct: 33 CASLDVRTTKELLELVEAL-GPKICLLKTHVDILTDFSMEGTVKPLKALSAKYNFLLFED 91
Query: 78 QKARDVPETTAMDYVGGYA 96
++ D+ T + Y G
Sbjct: 92 RRFADIGNTVKLQYSAGVY 110
>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET:
NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7
c.58.1.1
Length = 421
Score = 25.2 bits (56), Expect = 8.9
Identities = 5/18 (27%), Positives = 8/18 (44%)
Query: 4 ASSAVQKLIQAGTKIVAV 21
L + G K++AV
Sbjct: 222 GRWTAYWLEKMGAKVIAV 239
>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A
{Thermus thermophilus}
Length = 419
Score = 25.2 bits (56), Expect = 9.2
Identities = 4/18 (22%), Positives = 9/18 (50%)
Query: 4 ASSAVQKLIQAGTKIVAV 21
++ + G ++VAV
Sbjct: 230 GAAVALHAERLGMRVVAV 247
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.128 0.360
Gapped
Lambda K H
0.267 0.0814 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,992,158
Number of extensions: 116458
Number of successful extensions: 281
Number of sequences better than 10.0: 1
Number of HSP's gapped: 262
Number of HSP's successfully gapped: 51
Length of query: 135
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 51
Effective length of database: 4,356,429
Effective search space: 222177879
Effective search space used: 222177879
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (23.7 bits)