RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 032695
(135 letters)
>d1sawa_ d.177.1.1 (A:) FAHD1 (Flj36880, YISKL) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 217
Score = 118 bits (296), Expect = 5e-35
Identities = 65/126 (51%), Positives = 86/126 (68%)
Query: 8 VQKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLH 67
+ + + G IV VGRNYA H +E+ +AV EPVLFLKP+++Y G I +P +LH
Sbjct: 3 LSRFWEWGKNIVCVGRNYADHVREMRSAVLSEPVLFLKPSTAYAPEGSPILMPAYTRNLH 62
Query: 68 HEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAKSAGLPWTVAKGQDTFT 127
HE+EL VV+G++ R VPE AMDYVGGYA+ LDMTAR++Q K GLPWT+AK
Sbjct: 63 HELELGVVMGKRCRAVPEAAAMDYVGGYALCLDMTARDVQDECKKKGLPWTLAKSFTASC 122
Query: 128 PISSVV 133
P+S+ V
Sbjct: 123 PVSAFV 128
>d1nkqa_ d.177.1.1 (A:) Hypothetical protein Ynl168c {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 257
Score = 104 bits (260), Expect = 3e-29
Identities = 58/152 (38%), Positives = 82/152 (53%), Gaps = 27/152 (17%)
Query: 9 QKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPL----- 63
++A KI+ +GRNYAAH KEL N+ PK+P FLKPTSS + + V
Sbjct: 2 YNYLKAARKIICIGRNYAAHIKELNNSTPKQPFFFLKPTSSIVTPLSSSLVKTTRPANST 61
Query: 64 -------------------DSLHHEVELAVVIGQKARDVPETT---AMDYVGGYAVALDM 101
+HHE+ELA+++ + +V + D + G A+ALD+
Sbjct: 62 FNGLNEDGTNPGPIFIPRGVKVHHEIELALIVSKHLSNVTKMKPEEVYDSISGVALALDL 121
Query: 102 TAREIQSSAKSAGLPWTVAKGQDTFTPISSVV 133
TAR +Q AK GLPWT++KG DTF PIS++V
Sbjct: 122 TARNVQDEAKKKGLPWTISKGFDTFMPISAIV 153
>d1nr9a_ d.177.1.1 (A:) Putative isomerase YcgM {Escherichia coli
[TaxId: 562]}
Length = 221
Score = 97.2 bits (241), Expect = 1e-26
Identities = 53/112 (47%), Positives = 68/112 (60%)
Query: 17 KIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVI 76
K+V VG NYA H KE+G+AVP+EPVLF+KP ++ + +P S+HHEVELAV+I
Sbjct: 19 KVVCVGSNYAKHIKEMGSAVPEEPVLFIKPETALCDLRQPLAIPSDFGSVHHEVELAVLI 78
Query: 77 GQKARDVPETTAMDYVGGYAVALDMTAREIQSSAKSAGLPWTVAKGQDTFTP 128
G R E + GY VALD+T R++Q K AG PW AK D P
Sbjct: 79 GATLRQATEEHVRKAIAGYGVALDLTLRDVQGKMKKAGQPWEKAKAFDNSCP 130
>d1gtta2 d.177.1.1 (A:214-429) 4-hydroxyphenylacetate degradation
bifunctional isomerase/decarboxylase HpcE {Escherichia
coli [TaxId: 562]}
Length = 216
Score = 87.2 bits (215), Expect = 6e-23
Identities = 41/101 (40%), Positives = 59/101 (58%)
Query: 17 KIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVI 76
+ A+G NYA HA EL P+EP++FLK ++ G+ T P+ ++ +H+E EL VVI
Sbjct: 11 TLFALGLNYADHASELEFKPPEEPLVFLKAPNTLTGDNQTSVRPNNIEYMHYEAELVVVI 70
Query: 77 GQKARDVPETTAMDYVGGYAVALDMTAREIQSSAKSAGLPW 117
G++AR+V E AMDYV GY V D R+ + L
Sbjct: 71 GKQARNVSEADAMDYVAGYTVCNDYAIRDYLENYYRPNLRV 111
>d1hyoa2 d.177.1.1 (A:119-416) Fumarylacetoacetate hydrolase, FAH,
C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 298
Score = 78.2 bits (192), Expect = 6e-19
Identities = 29/130 (22%), Positives = 46/130 (35%), Gaps = 20/130 (15%)
Query: 21 VGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPH--------------PLDSL 66
VG + L PV + SS + +G I P L
Sbjct: 19 VGIMFRGKENALLPNWLHLPVGYHGRASSIVVSGTPIRRPMGQMRPDNSKPPVYGACRLL 78
Query: 67 HHEVELAVVIGQ---KARDVPETTAMDYVGGYAVALDMTAREIQSSAKSAGLPWTVAKGQ 123
E+E+A +G +P + A +++ G + D +AR+IQ P+ G+
Sbjct: 79 DMELEMAFFVGPGNRFGEPIPISKAHEHIFGMVLMNDWSARDIQQWEYVPLGPF---LGK 135
Query: 124 DTFTPISSVV 133
T IS V
Sbjct: 136 SFGTTISPWV 145
>d1gtta1 d.177.1.1 (A:1-213) 4-hydroxyphenylacetate degradation
bifunctional isomerase/decarboxylase HpcE {Escherichia
coli [TaxId: 562]}
Length = 213
Score = 64.6 bits (156), Expect = 2e-14
Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 9/99 (9%)
Query: 17 KIVAVGRNYAAHAKELGNAV--------PKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHH 68
I AV N+ + A PK V F+KP ++ +G G I P + +
Sbjct: 4 TIFAVALNHRSQLDAWQEAFQQSPYKAPPKTAVWFIKPRNTVIGCGEPIPFPQG-EKVLS 62
Query: 69 EVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQ 107
+A+++G+ A V E A +Y+ GYA+A D++ E
Sbjct: 63 GATVALIVGKTATKVREEDAAEYIAGYALANDVSLPEES 101
>d1d6za2 d.17.2.1 (A:91-185) Copper amine oxidase, domains 1 and 2
{Escherichia coli [TaxId: 562]}
Length = 95
Score = 26.4 bits (58), Expect = 0.58
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 60 PHPLDSL-HHEVELAVVIGQKARDVPETTAMDYVG 93
PHPL++L E++ AV I + + D T +
Sbjct: 3 PHPLNALTADEIKQAVEIVKASADFKPNTRFTEIS 37
>d1c0ma1 b.34.7.1 (A:217-269) DNA-binding domain of retroviral
integrase {Rous sarcoma virus RSV [TaxId: 11886]}
Length = 53
Score = 23.3 bits (50), Expect = 3.3
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 13 QAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKP 46
+ G ++ GR YAA + V P +KP
Sbjct: 18 EKGWNVLVWGRGYAAVKNRDTDKVIWVPSRKVKP 51
>d1dqwa_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP
decarboxylase) {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 267
Score = 24.4 bits (52), Expect = 6.5
Identities = 13/76 (17%), Positives = 25/76 (32%), Gaps = 1/76 (1%)
Query: 18 IVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIG 77
++ EL A+ + + LK L + PL +L + +
Sbjct: 33 CASLDVRTTKELLELVEALGPK-ICLLKTHVDILTDFSMEGTVKPLKALSAKYNFLLFED 91
Query: 78 QKARDVPETTAMDYVG 93
+K D+ T + Y
Sbjct: 92 RKFADIGNTVKLQYSA 107
>d1w2za2 d.17.2.1 (A:6-98) Copper amine oxidase, domains 1 and 2
{Pea seedling (Pisum sativum) [TaxId: 3888]}
Length = 93
Score = 23.3 bits (50), Expect = 7.7
Identities = 9/23 (39%), Positives = 9/23 (39%), Gaps = 1/23 (4%)
Query: 59 VPHPLDSL-HHEVELAVVIGQKA 80
V HPLD L E I Q
Sbjct: 1 VQHPLDPLTKEEFLAVQTIVQNK 23
>d1wd7a_ c.113.1.1 (A:) Probable uroporphyrinogen-III synthase
{Thermus thermophilus [TaxId: 274]}
Length = 254
Score = 23.9 bits (51), Expect = 8.0
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 1 MATASSAVQKLIQAGTKIVAVGRNYAAHAKELG---NAVPKEP 40
A A+++ + K +AVGR A +E G V +
Sbjct: 194 GAKDPKALREALNTRVKALAVGRVTADALREWGVKPFYVDETE 236
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.313 0.128 0.360
Gapped
Lambda K H
0.267 0.0603 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 449,677
Number of extensions: 19201
Number of successful extensions: 71
Number of sequences better than 10.0: 1
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 19
Length of query: 135
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 59
Effective length of database: 1,364,116
Effective search space: 80482844
Effective search space used: 80482844
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 48 (22.5 bits)