BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032696
         (135 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|A1A139|Y641_BIFAA UPF0182 protein BAD_0641 OS=Bifidobacterium adolescentis (strain
           ATCC 15703 / DSM 20083 / NCTC 11814 / E194a) GN=BAD_0641
           PE=3 SV=1
          Length = 1083

 Score = 33.9 bits (76), Expect = 0.33,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 6/66 (9%)

Query: 68  RSFKNGSDIFDGIFRCYAVVIAFFVALAE----TEWQFVLKFTKVLEYWVARGMLQILYV 123
           R   NGS IF G+    A+VI  F ALA+      W   L F  V+  W   G    L++
Sbjct: 70  RKPSNGSKIFIGVVLALAIVIGLFFALAQFVTDVMWYSQLGFQSVI--WTQLGTRVGLWL 127

Query: 124 LYYRLI 129
            Y  LI
Sbjct: 128 AYAVLI 133


>sp|Q5ZLL1|KC1E_CHICK Casein kinase I isoform epsilon OS=Gallus gallus GN=CSNK1E PE=2
           SV=2
          Length = 416

 Score = 31.2 bits (69), Expect = 1.8,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)

Query: 8   VGEISQPPPQPQPPPPPARASSGGRLRNRADPL 40
           +G++     +  PP PPA A+ G RLRN A+P+
Sbjct: 317 MGQLRGSATRALPPGPPAGAT-GNRLRNVAEPM 348


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.329    0.143    0.449 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,937,465
Number of Sequences: 539616
Number of extensions: 1937208
Number of successful extensions: 38180
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 92
Number of HSP's that attempted gapping in prelim test: 31276
Number of HSP's gapped (non-prelim): 5344
length of query: 135
length of database: 191,569,459
effective HSP length: 100
effective length of query: 35
effective length of database: 137,607,859
effective search space: 4816275065
effective search space used: 4816275065
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.8 bits)