Query 032696
Match_columns 135
No_of_seqs 27 out of 29
Neff 2.4
Searched_HMMs 13730
Date Mon Mar 25 07:16:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032696.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032696hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1j8ca_ d.15.1.1 (A:) Ubiquiti 25.6 40 0.0029 20.8 3.9 10 1-10 1-10 (103)
2 d1eucb1 c.23.4.1 (B:246-393) S 15.3 36 0.0026 23.7 2.0 23 75-97 79-101 (148)
3 d3d37a1 b.106.1.1 (A:6-178) Ba 13.5 34 0.0025 22.3 1.3 14 95-108 143-156 (173)
4 d1wrua2 b.106.1.1 (A:3-176) Ba 13.5 34 0.0025 21.9 1.3 15 95-109 144-158 (174)
5 d2nu7b1 c.23.4.1 (B:239-388) S 11.8 52 0.0038 22.8 2.0 23 75-97 79-101 (150)
6 d1s12a_ d.64.2.1 (A:) Hypothet 8.5 69 0.0051 20.4 1.5 30 51-82 24-53 (94)
7 d2itba1 a.25.1.7 (A:3-201) Put 8.4 3.1E+02 0.023 19.5 5.4 45 59-117 39-83 (199)
8 d2gy9p1 d.27.1.1 (P:1-78) Ribo 8.0 51 0.0037 20.6 0.6 8 109-116 57-64 (78)
9 d3cdda2 b.106.1.1 (A:2-180) Ba 7.5 74 0.0054 20.3 1.3 14 95-108 149-162 (179)
10 d2ox7a1 b.172.1.1 (A:3-145) Hy 6.7 38 0.0028 21.6 -0.5 12 71-82 74-86 (143)
No 1
>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.63 E-value=40 Score=20.85 Aligned_cols=10 Identities=60% Similarity=0.866 Sum_probs=6.7
Q ss_pred CCCCccccCC
Q 032696 1 MARNGERVGE 10 (135)
Q Consensus 1 Mar~~~~~~~ 10 (135)
|+.+++....
T Consensus 1 m~~~~~ss~p 10 (103)
T d1j8ca_ 1 MAENGESSGP 10 (103)
T ss_dssp CCCSCCCCCC
T ss_pred CCccCccCCC
Confidence 7777777543
No 2
>d1eucb1 c.23.4.1 (B:246-393) Succinyl-CoA synthetase, beta-chain, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Probab=15.28 E-value=36 Score=23.67 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=18.8
Q ss_pred cccchhhhHHHHHHHHHHHHHhh
Q 032696 75 DIFDGIFRCYAVVIAFFVALAET 97 (135)
Q Consensus 75 dif~GI~RcYaV~iA~fVvlaET 97 (135)
.||.||.||--|+-++.=++-|.
T Consensus 79 NIfGGI~rcD~vA~GIv~A~~e~ 101 (148)
T d1eucb1 79 NIFGGIVNCAIIANGITKACREL 101 (148)
T ss_dssp EEECSSSCHHHHHHHHHHHHHHH
T ss_pred EeeEeehhHHHHHHHHHHHHHhc
Confidence 69999999999988777666654
No 3
>d3d37a1 b.106.1.1 (A:6-178) Baseplate protein gpP {Neisseria meningitidis [TaxId: 487]}
Probab=13.50 E-value=34 Score=22.33 Aligned_cols=14 Identities=29% Similarity=0.520 Sum_probs=11.8
Q ss_pred HhhhHHHHHHHHHH
Q 032696 95 AETEWQFVLKFTKV 108 (135)
Q Consensus 95 aETEW~~i~kF~kv 108 (135)
-||.|+|+.+.++-
T Consensus 143 ~ETd~~fl~Rla~~ 156 (173)
T d3d37a1 143 GETVWQALTHIANS 156 (173)
T ss_dssp TCBHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 39999999998764
No 4
>d1wrua2 b.106.1.1 (A:3-176) Baseplate protein gpP {Bacteriophage mu [TaxId: 10677]}
Probab=13.49 E-value=34 Score=21.87 Aligned_cols=15 Identities=13% Similarity=0.332 Sum_probs=12.5
Q ss_pred HhhhHHHHHHHHHHH
Q 032696 95 AETEWQFVLKFTKVL 109 (135)
Q Consensus 95 aETEW~~i~kF~kvL 109 (135)
-||.|+||.|+++-.
T Consensus 144 ~ESd~~fl~RLa~~~ 158 (174)
T d1wrua2 144 SETVYEALVRASRAR 158 (174)
T ss_dssp TCBHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHHC
Confidence 499999999988754
No 5
>d2nu7b1 c.23.4.1 (B:239-388) Succinyl-CoA synthetase, beta-chain, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=11.78 E-value=52 Score=22.76 Aligned_cols=23 Identities=39% Similarity=0.653 Sum_probs=18.1
Q ss_pred cccchhhhHHHHHHHHHHHHHhh
Q 032696 75 DIFDGIFRCYAVVIAFFVALAET 97 (135)
Q Consensus 75 dif~GI~RcYaV~iA~fVvlaET 97 (135)
.||.||.||--|+=++.=++=|.
T Consensus 79 NifGGI~rcd~vA~GIv~A~k~~ 101 (150)
T d2nu7b1 79 NIFGGIVRCDLIADGIIGAVAEV 101 (150)
T ss_dssp EEESCSSCHHHHHHHHHHHHHHH
T ss_pred EEeeeeehhHHHHHHHHHHHHhc
Confidence 79999999999887776555554
No 6
>d1s12a_ d.64.2.1 (A:) Hypothetical protein TM1457 {Thermotoga maritima [TaxId: 2336]}
Probab=8.52 E-value=69 Score=20.40 Aligned_cols=30 Identities=23% Similarity=0.210 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHhhhccCcccccchhhh
Q 032696 51 TSLTALLCLAVNVLSAIRSFKNGSDIFDGIFR 82 (135)
Q Consensus 51 Tal~AlLCi~vNvlSavrsf~~~~dif~GI~R 82 (135)
.++++|...++|.+....+.+ .++=+|.++
T Consensus 24 AaVS~l~~~~vN~l~~~~~~~--~~~~~G~l~ 53 (94)
T d1s12a_ 24 ASVSLLTQHVANFLKAEKKAK--IKKESGYLK 53 (94)
T ss_dssp HHHHHHHHHHHHHHHHTTSEE--EEEETTEEE
T ss_pred hhhHHHHHHHHHHHHHHhCCc--EEeeCCEEE
Confidence 567778888899887654443 244467543
No 7
>d2itba1 a.25.1.7 (A:3-201) Putative tRNA-(Ms(2)io(6)a)-hydroxylase PP2188 {Pseudomonas putida [TaxId: 303]}
Probab=8.37 E-value=3.1e+02 Score=19.54 Aligned_cols=45 Identities=24% Similarity=0.338 Sum_probs=31.7
Q ss_pred HHHHHHHHhhhccCcccccchhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhH
Q 032696 59 LAVNVLSAIRSFKNGSDIFDGIFRCYAVVIAFFVALAETEWQFVLKFTKVLEYWVARGM 117 (135)
Q Consensus 59 i~vNvlSavrsf~~~~dif~GI~RcYaV~iA~fVvlaETEW~~i~kF~kvLeyW~gRGm 117 (135)
.+-|.||.+.+|-+..+ ++.-..-+|.-||+.|-+-.+++ -.||+
T Consensus 39 AA~~Alsli~rYp~~~~-----------Lv~~m~~La~EEL~HF~qV~~im---~~Rgi 83 (199)
T d2itba1 39 AASTALSLIAKYNTHLD-----------LINMMSRLAREELVHHEQVLRLM---KRRGV 83 (199)
T ss_dssp HHHHHHHHHHHTTTCHH-----------HHHHHHHHHHHHHHHHHHHHHHH---HHTTC
T ss_pred HHHHHHHHHHHCCChHH-----------HHHHHHHHHHHHHHHHHHHHHHH---HHcCC
Confidence 46788999999976654 56667788999998665555554 45654
No 8
>d2gy9p1 d.27.1.1 (P:1-78) Ribosomal protein S16 {Escherichia coli [TaxId: 562]}
Probab=8.03 E-value=51 Score=20.65 Aligned_cols=8 Identities=38% Similarity=1.115 Sum_probs=5.0
Q ss_pred HHHHhhhh
Q 032696 109 LEYWVARG 116 (135)
Q Consensus 109 LeyW~gRG 116 (135)
++||++.|
T Consensus 57 i~~Wl~~G 64 (78)
T d2gy9p1 57 IAHWVGQG 64 (78)
T ss_dssp HHHHTTTT
T ss_pred HHHHHHCc
Confidence 45666665
No 9
>d3cdda2 b.106.1.1 (A:2-180) Baseplate protein gpP {Shewanella oneidensis [TaxId: 70863]}
Probab=7.50 E-value=74 Score=20.28 Aligned_cols=14 Identities=21% Similarity=0.396 Sum_probs=11.5
Q ss_pred HhhhHHHHHHHHHH
Q 032696 95 AETEWQFVLKFTKV 108 (135)
Q Consensus 95 aETEW~~i~kF~kv 108 (135)
-||.|+|+.+..+-
T Consensus 149 ~Esd~~fl~Rla~~ 162 (179)
T d3cdda2 149 GETPHELLARLAKQ 162 (179)
T ss_dssp TCCHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHH
Confidence 49999999988763
No 10
>d2ox7a1 b.172.1.1 (A:3-145) Hypothetical protein EF1440 {Enterococcus faecalis [TaxId: 1351]}
Probab=6.70 E-value=38 Score=21.55 Aligned_cols=12 Identities=58% Similarity=1.099 Sum_probs=8.0
Q ss_pred cCcccccch-hhh
Q 032696 71 KNGSDIFDG-IFR 82 (135)
Q Consensus 71 ~~~~dif~G-I~R 82 (135)
|++..||+| |++
T Consensus 74 KNGkEIYEGDIv~ 86 (143)
T d2ox7a1 74 KNGVEIFEGDILV 86 (143)
T ss_dssp TTSCEEETTEEEE
T ss_pred CCCCEEecCcEEE
Confidence 456678888 654
Done!