Query 032697
Match_columns 135
No_of_seqs 162 out of 1363
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 04:47:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032697.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032697hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0537 Cytochrome b5 [Energy 100.0 3.2E-33 7E-38 197.9 4.4 86 5-90 3-88 (124)
2 PF00173 Cyt-b5: Cytochrome b5 99.9 3.8E-25 8.2E-30 143.0 4.8 75 8-82 1-76 (76)
3 KOG0536 Flavohemoprotein b5+b5 99.9 2.1E-23 4.5E-28 147.6 6.0 77 7-83 68-144 (145)
4 PLN03199 delta6-acyl-lipid des 99.8 1.6E-20 3.5E-25 158.6 11.2 78 6-86 23-100 (485)
5 PLN03198 delta6-acyl-lipid des 99.8 4.6E-21 9.9E-26 163.2 7.6 77 6-84 103-179 (526)
6 COG5274 CYB5 Cytochrome b invo 99.8 1.1E-20 2.4E-25 138.5 5.5 79 6-84 49-127 (164)
7 PLN02252 nitrate reductase [NA 99.8 3.5E-20 7.7E-25 165.5 7.3 80 6-86 517-596 (888)
8 KOG4576 Sulfite oxidase, heme- 99.6 9.2E-17 2E-21 114.4 2.3 83 6-88 79-163 (167)
9 KOG4232 Delta 6-fatty acid des 99.6 7.7E-16 1.7E-20 126.7 7.0 78 6-85 7-86 (430)
10 COG4892 Predicted heme/steroid 99.0 1.4E-09 3E-14 69.5 5.2 75 6-83 1-77 (81)
11 KOG1110 Putative steroid membr 97.7 5.8E-05 1.3E-09 56.5 4.2 53 7-61 56-112 (183)
12 KOG1108 Predicted heme/steroid 97.4 0.00013 2.8E-09 56.7 3.2 57 5-62 58-117 (281)
13 PF14901 Jiv90: Cleavage induc 89.4 0.21 4.6E-06 33.8 1.4 14 26-39 60-73 (94)
14 PRK14758 hypothetical protein; 67.0 15 0.00034 18.9 3.4 20 114-133 8-27 (27)
15 KOG0720 Molecular chaperone (D 64.4 3.6 7.8E-05 35.3 1.3 17 23-39 379-395 (490)
16 PF11698 V-ATPase_H_C: V-ATPas 59.3 0.89 1.9E-05 32.0 -2.7 30 31-60 65-94 (119)
17 cd00256 VATPase_H VATPase_H, r 45.0 4.6 0.0001 34.3 -1.1 40 20-61 366-405 (429)
18 PHA02131 hypothetical protein 44.8 16 0.00036 22.5 1.6 30 7-36 2-45 (70)
19 PF15086 UPF0542: Uncharacteri 38.2 83 0.0018 20.3 4.1 25 105-129 19-43 (74)
20 PRK06549 acetyl-CoA carboxylas 37.6 23 0.0005 25.1 1.7 13 23-35 5-17 (130)
21 PF12955 DUF3844: Domain of un 36.3 71 0.0015 21.9 3.8 27 103-131 63-89 (103)
22 PRK00159 putative septation in 35.8 1.1E+02 0.0023 20.4 4.5 19 115-133 36-54 (87)
23 PF06781 UPF0233: Uncharacteri 33.7 1.1E+02 0.0023 20.4 4.2 20 115-134 36-55 (87)
24 COG3424 BcsA Predicted naringe 31.8 18 0.0004 29.8 0.4 36 40-82 276-312 (356)
25 TIGR02148 Fibro_Slime fibro-sl 27.8 49 0.0011 22.2 1.9 23 15-37 22-45 (90)
26 PF10618 Tail_tube: Phage tail 27.5 58 0.0013 22.6 2.3 25 21-45 7-31 (119)
27 KOG2759 Vacuolar H+-ATPase V1 27.4 14 0.00031 31.4 -0.9 34 21-56 380-413 (442)
28 PRK02251 putative septation in 27.0 1.8E+02 0.0039 19.3 4.4 19 115-133 37-55 (87)
29 PF05521 Phage_H_T_join: Phage 26.9 72 0.0016 19.8 2.6 18 21-38 65-82 (95)
30 COG3197 FixS Uncharacterized p 24.2 69 0.0015 19.7 1.9 15 114-128 5-19 (58)
31 KOG4298 CAP-binding protein co 24.1 67 0.0015 24.7 2.2 18 115-132 188-205 (245)
32 TIGR00847 ccoS cytochrome oxid 23.0 1.5E+02 0.0033 17.6 3.2 11 114-124 5-15 (51)
33 PF14654 Epiglycanin_C: Mucin, 22.2 1.9E+02 0.0041 19.8 3.9 15 119-133 29-43 (106)
34 PHA02844 putative transmembran 21.8 2.4E+02 0.0051 18.3 4.5 10 124-133 61-70 (75)
35 PF05283 MGC-24: Multi-glycosy 21.5 1.3E+02 0.0027 22.9 3.3 20 114-133 166-185 (186)
36 PF02797 Chal_sti_synt_C: Chal 21.4 39 0.00084 24.5 0.5 18 37-54 62-79 (151)
37 PHA03054 IMV membrane protein; 20.8 1.8E+02 0.0039 18.6 3.4 13 121-133 58-70 (72)
38 PF04375 HemX: HemX; InterPro 20.8 3.1E+02 0.0067 22.6 5.8 10 122-131 41-50 (372)
39 PF07533 BRK: BRK domain; Int 20.4 19 0.00041 21.0 -1.1 14 31-44 27-40 (46)
No 1
>KOG0537 consensus Cytochrome b5 [Energy production and conversion]
Probab=99.97 E-value=3.2e-33 Score=197.91 Aligned_cols=86 Identities=58% Similarity=1.062 Sum_probs=81.3
Q ss_pred CCCccCHHHHhcccCCCCeEEEEcCEEeeccccccccCcchhHhhhhcCCCcchhhhhcCCChHHHHhhhhCeEEEecCC
Q 032697 5 DGKVFTLAEVSDHNNMKDCWLIINGKVYDVTKFLEDHPGGDEVLLSATGKDATDDFEDVGHSPSAREMMDQYYVGEIDVS 84 (135)
Q Consensus 5 ~~~~~t~~ev~~h~~~~~~wvvi~g~VYDvT~f~~~HPGG~~~l~~~aG~D~T~~f~~~~Hs~~a~~~l~~~~IG~l~~~ 84 (135)
+.+.||++||++||+.++|||+|+|+|||||+|+++||||.++|+.+||+|+|+.|++.+||..|++||++|+||.+..+
T Consensus 3 ~~k~~~~~EV~kHn~~~d~Wvii~gkVYDvT~Fl~eHPGG~~vLl~~AGkDaT~~F~~~gHS~~A~~ml~~y~ig~~~~~ 82 (124)
T KOG0537|consen 3 DLKYYTLSEVAKHNKKDDCWVIIHGKVYDVTSFLDEHPGGEDVLLEYAGKDATEAFEDVGHSKDAREMLEEYYIGEVPTT 82 (124)
T ss_pred ccccccHHHHHhhcCCCCeEEEECCEEEeccchhhhCCChHHHHHHHhchhhHHhccccCCcHHHHHHhhhcccccccCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCC
Q 032697 85 TIPKKK 90 (135)
Q Consensus 85 ~~~~~~ 90 (135)
..+...
T Consensus 83 ~~~~~~ 88 (124)
T KOG0537|consen 83 ARPVVW 88 (124)
T ss_pred Ccccee
Confidence 765543
No 2
>PF00173 Cyt-b5: Cytochrome b5-like Heme/Steroid binding domain This prints entry is a subset of the Pfam entry; InterPro: IPR001199 Cytochromes b5 are ubiquitous electron transport proteins found in animals, plants and yeasts []. The microsomal and mitochondrial variants are membrane-bound, while those from erythrocytes and other animal tissues are water-soluble [, ]. The 3D structure of bovine cyt b5 is known, the fold belonging to the alpha+beta class, with 5 strands and 5 short helices forming a framework for supporting a central haem group []. The cytochrome b5 domain is similar to that of a number of oxidoreductases, such as plant and fungal nitrate reductases, sulphite oxidase, yeast flavocytochrome b2 (L-lactate dehydrogenase) and plant cyt b5/acyl lipid desaturase fusion protein.; GO: 0020037 heme binding; PDB: 2I96_A 3KS0_A 1KBI_B 1KBJ_B 1LTD_A 1SZG_B 1SZF_A 1LDC_B 2OZ0_B 1LCO_A ....
Probab=99.91 E-value=3.8e-25 Score=143.02 Aligned_cols=75 Identities=51% Similarity=0.924 Sum_probs=69.8
Q ss_pred ccCHHHHhcccCCCCeEEEEcCEEeeccccccccCcchhHhhhhcCCCcchhhhhcCCChHHHHhhhh-CeEEEec
Q 032697 8 VFTLAEVSDHNNMKDCWLIINGKVYDVTKFLEDHPGGDEVLLSATGKDATDDFEDVGHSPSAREMMDQ-YYVGEID 82 (135)
Q Consensus 8 ~~t~~ev~~h~~~~~~wvvi~g~VYDvT~f~~~HPGG~~~l~~~aG~D~T~~f~~~~Hs~~a~~~l~~-~~IG~l~ 82 (135)
+||++||++|+..+++||+|+|+|||||+|+..||||..++..++|+|+|+.|....|+..+.++|++ |+||.|+
T Consensus 1 ~~t~~el~~h~~~~~~~v~i~g~VYDvt~~~~~hpgg~~~~~~~aG~D~T~~f~~~~h~~~~~~~l~~~~~vG~ld 76 (76)
T PF00173_consen 1 VYTWEELAKHNKKGDCWVIIDGKVYDVTDFLDRHPGGADILKKYAGRDATDAFEEAFHSWWAEKCLEKYYKVGYLD 76 (76)
T ss_dssp EEEHHHHTTTEETTEEEEEETTEEEECTTTTTTSTTTSHHHHTTTTSBTHHHHHHHTHHHHHHHHHHGCGEEEEE-
T ss_pred CCCHHHHhhhCCCCCEEEEECCEEcccccccccccchhHHHHHhccccccHHHhhccCcHHHHHHccCCCEEEEeC
Confidence 48999999999999999999999999999999999999999999999999999444699999999998 9999985
No 3
>KOG0536 consensus Flavohemoprotein b5+b5R [Energy production and conversion]
Probab=99.89 E-value=2.1e-23 Score=147.63 Aligned_cols=77 Identities=36% Similarity=0.661 Sum_probs=73.0
Q ss_pred CccCHHHHhcccCCCCeEEEEcCEEeeccccccccCcchhHhhhhcCCCcchhhhhcCCChHHHHhhhhCeEEEecC
Q 032697 7 KVFTLAEVSDHNNMKDCWLIINGKVYDVTKFLEDHPGGDEVLLSATGKDATDDFEDVGHSPSAREMMDQYYVGEIDV 83 (135)
Q Consensus 7 ~~~t~~ev~~h~~~~~~wvvi~g~VYDvT~f~~~HPGG~~~l~~~aG~D~T~~f~~~~Hs~~a~~~l~~~~IG~l~~ 83 (135)
..+|.+||++|++.+|||++|+|+|||||.|++.||||.+.|+.++|+|+|..|+.+|-..+-.++|+.++||.+.+
T Consensus 68 i~vt~~El~KH~~~dDcW~~i~G~VYnVt~Yl~fHPgG~d~lmk~aGrD~T~~Fnk~H~WVN~e~LL~~c~VGvl~d 144 (145)
T KOG0536|consen 68 IPVTAEELKKHNKKDDCWIAIRGKVYNVTAYLDFHPGGVDELMKHAGRDATKLFNKYHAWVNYEELLKKCFVGVLVD 144 (145)
T ss_pred CccCHHHHHhhCCccceEEEEcCEEEecccccccCCCCHHHHHHhcCcchHHHHHHHHHHhcHHHHHhhceeeeecc
Confidence 47899999999999999999999999999999999999999999999999999999977788899999999998864
No 4
>PLN03199 delta6-acyl-lipid desaturase-like protein; Provisional
Probab=99.84 E-value=1.6e-20 Score=158.64 Aligned_cols=78 Identities=35% Similarity=0.753 Sum_probs=72.4
Q ss_pred CCccCHHHHhcccCCCCeEEEEcCEEeeccccccccCcchhHhhhhcCCCcchhhhhcCCChHHHHhhhhCeEEEecCCC
Q 032697 6 GKVFTLAEVSDHNNMKDCWLIINGKVYDVTKFLEDHPGGDEVLLSATGKDATDDFEDVGHSPSAREMMDQYYVGEIDVST 85 (135)
Q Consensus 6 ~~~~t~~ev~~h~~~~~~wvvi~g~VYDvT~f~~~HPGG~~~l~~~aG~D~T~~f~~~~Hs~~a~~~l~~~~IG~l~~~~ 85 (135)
.+.+|++||++|+++++||++|+|+|||||+|. .||||. +|..++|+|+|+.|+.. |+..++++|++|+||++++++
T Consensus 23 ~~~~s~~ev~~h~~~~~~wi~i~g~vYDvt~f~-~HPGG~-~i~~~aG~DaT~~F~~~-H~~~~~~~l~~~~iG~l~~~~ 99 (485)
T PLN03199 23 PQKISWQEVKKHASPDDAWIIHQNKVYDVSNWH-DHPGGA-VIFTHAGDDMTDIFAAF-HAPGSQALMKKFYIGDLIPES 99 (485)
T ss_pred CCccCHHHHHhhCCCCCeEEEECCEEEcCCCcC-cCCCch-HHHhhCCCChhHHHHHh-cCHHHHHHHHhcccccccccc
Confidence 678999999999999999999999999999997 899998 78899999999999986 999999999999999997654
Q ss_pred C
Q 032697 86 I 86 (135)
Q Consensus 86 ~ 86 (135)
.
T Consensus 100 ~ 100 (485)
T PLN03199 100 T 100 (485)
T ss_pred c
Confidence 3
No 5
>PLN03198 delta6-acyl-lipid desaturase; Provisional
Probab=99.84 E-value=4.6e-21 Score=163.22 Aligned_cols=77 Identities=40% Similarity=0.874 Sum_probs=72.7
Q ss_pred CCccCHHHHhcccCCCCeEEEEcCEEeeccccccccCcchhHhhhhcCCCcchhhhhcCCChHHHHhhhhCeEEEecCC
Q 032697 6 GKVFTLAEVSDHNNMKDCWLIINGKVYDVTKFLEDHPGGDEVLLSATGKDATDDFEDVGHSPSAREMMDQYYVGEIDVS 84 (135)
Q Consensus 6 ~~~~t~~ev~~h~~~~~~wvvi~g~VYDvT~f~~~HPGG~~~l~~~aG~D~T~~f~~~~Hs~~a~~~l~~~~IG~l~~~ 84 (135)
.+.||++|+++|+++++|||+|+|+|||||+|++.||||. +|..++|+|+|+.|+.+ |+..+.++|++|+||+++..
T Consensus 103 ~~~~t~~ev~~H~~~~d~Wivi~gkVYDvT~fl~~HPGG~-~i~~~aG~DaT~~F~~~-H~~~~~~~l~~~~IG~l~~~ 179 (526)
T PLN03198 103 SKSHLLSEVAAHNKPNDCWIVIKNKVYDVSDFAAEHPGGS-VISTYFGRDGTDAFSSF-HAASTWKILQDFYIGDVDNV 179 (526)
T ss_pred cCcCCHHHHHhhCCCCCeEEEECCEEEecHHHHHhCCCch-HHHHhcCCcHhHHHHHh-cCHHHHHHHhhCcceecCCc
Confidence 4599999999999999999999999999999999999998 88899999999999997 99999999999999999754
No 6
>COG5274 CYB5 Cytochrome b involved in lipid metabolism [Energy production and conversion / Lipid metabolism]
Probab=99.82 E-value=1.1e-20 Score=138.49 Aligned_cols=79 Identities=42% Similarity=0.852 Sum_probs=75.3
Q ss_pred CCccCHHHHhcccCCCCeEEEEcCEEeeccccccccCcchhHhhhhcCCCcchhhhhcCCChHHHHhhhhCeEEEecCC
Q 032697 6 GKVFTLAEVSDHNNMKDCWLIINGKVYDVTKFLEDHPGGDEVLLSATGKDATDDFEDVGHSPSAREMMDQYYVGEIDVS 84 (135)
Q Consensus 6 ~~~~t~~ev~~h~~~~~~wvvi~g~VYDvT~f~~~HPGG~~~l~~~aG~D~T~~f~~~~Hs~~a~~~l~~~~IG~l~~~ 84 (135)
...++.+||.+|+++++|||+|+|+|||||.|+.+||||+++|+.++|+|+|+.|...+|+..+.++++.++||.+...
T Consensus 49 ~~~~~~eev~~h~~~~d~~ivi~g~VyDvs~fl~~HPGGe~ii~~~~g~Dat~~f~~~~~~~~~~~llk~~yv~~v~r~ 127 (164)
T COG5274 49 PKPITAEEVAKHNKSEDCWIVINGKVYDVSQFLDEHPGGEDIIKDTAGKDATKAFNFLHHSHQIGNLLKDVYVDQVHRP 127 (164)
T ss_pred cccccHHHHHHhcCccceEEEEcCEEEEhhhccccCCCcceeehhccCchhhhhhcccccchhHHhhhhceeeecccCc
Confidence 4679999999999999999999999999999999999999999999999999999999999999999999999998754
No 7
>PLN02252 nitrate reductase [NADPH]
Probab=99.81 E-value=3.5e-20 Score=165.50 Aligned_cols=80 Identities=40% Similarity=0.920 Sum_probs=75.9
Q ss_pred CCccCHHHHhcccCCCCeEEEEcCEEeeccccccccCcchhHhhhhcCCCcchhhhhcCCChHHHHhhhhCeEEEecCCC
Q 032697 6 GKVFTLAEVSDHNNMKDCWLIINGKVYDVTKFLEDHPGGDEVLLSATGKDATDDFEDVGHSPSAREMMDQYYVGEIDVST 85 (135)
Q Consensus 6 ~~~~t~~ev~~h~~~~~~wvvi~g~VYDvT~f~~~HPGG~~~l~~~aG~D~T~~f~~~~Hs~~a~~~l~~~~IG~l~~~~ 85 (135)
.+.||++||++|++.++|||+|+|+|||+|+|++.||||.++|+.++|+|+|+.|+.+ |+..|+++|++|+||.+....
T Consensus 517 ~~~~t~~ev~~h~~~~~~Wivi~g~VYDvT~fl~~HPGG~~~I~~~aG~DaT~~F~~~-Hs~~a~~~L~~~~IG~l~~~~ 595 (888)
T PLN02252 517 SKQYTMSEVRKHNSEDSCWIVVHGHVYDCTRFLKDHPGGADSILINAGTDCTEEFDAI-HSDKAKKMLEDYRIGELVTTG 595 (888)
T ss_pred cceeCHHHHHhhCcCCCeEEEECCEEEeCHHHHHHCCChHHHHHhhcCCCcHHHHhhh-hhHHHHHHHHhCcCCcccccc
Confidence 5789999999999999999999999999999999999999999999999999999986 999999999999999998654
Q ss_pred C
Q 032697 86 I 86 (135)
Q Consensus 86 ~ 86 (135)
.
T Consensus 596 ~ 596 (888)
T PLN02252 596 A 596 (888)
T ss_pred c
Confidence 3
No 8
>KOG4576 consensus Sulfite oxidase, heme-binding component [Energy production and conversion]
Probab=99.63 E-value=9.2e-17 Score=114.42 Aligned_cols=83 Identities=31% Similarity=0.583 Sum_probs=70.0
Q ss_pred CCccCHHHHhcccCCC-CeEEEEcCEEeeccccccccCcchhHhhhhcCC-CcchhhhhcCCChHHHHhhhhCeEEEecC
Q 032697 6 GKVFTLAEVSDHNNMK-DCWLIINGKVYDVTKFLEDHPGGDEVLLSATGK-DATDDFEDVGHSPSAREMMDQYYVGEIDV 83 (135)
Q Consensus 6 ~~~~t~~ev~~h~~~~-~~wvvi~g~VYDvT~f~~~HPGG~~~l~~~aG~-D~T~~f~~~~Hs~~a~~~l~~~~IG~l~~ 83 (135)
+..|+.+||++|+++. ..||.+...|||||+|++.||||.++++...|- |.-++....|....++++|+.|+||++.+
T Consensus 79 l~iY~~EEV~~H~s~e~rIWVTyg~gVyDVTdFv~~HPGGdKillAAG~a~dPFWalY~qHnt~eVlElLegyrIG~L~~ 158 (167)
T KOG4576|consen 79 LHIYTKEEVSSHTSPETRIWVTYGSGVYDVTDFVDLHPGGDKILLAAGGALDPFWALYAQHNTSEVLELLEGYRIGELNP 158 (167)
T ss_pred ccchhHHHHHhcCCCccceEEEecCcceeHHHHHHhCCCcceeeeecCCCcCcHHHHHHHhhHHHHHHHHhhcccccCCh
Confidence 5799999999999865 699999999999999999999998887755443 66666666677889999999999999998
Q ss_pred CCCCC
Q 032697 84 STIPK 88 (135)
Q Consensus 84 ~~~~~ 88 (135)
.+.+.
T Consensus 159 ~dv~~ 163 (167)
T KOG4576|consen 159 EDVVA 163 (167)
T ss_pred hhccc
Confidence 76544
No 9
>KOG4232 consensus Delta 6-fatty acid desaturase/delta-8 sphingolipid desaturase [Lipid transport and metabolism]
Probab=99.62 E-value=7.7e-16 Score=126.73 Aligned_cols=78 Identities=32% Similarity=0.687 Sum_probs=71.3
Q ss_pred CCccCHHHHhcccCCCCeEEEEcCEEeeccccccccCcchhHhhhhcCCCcchhhhhcCCChH--HHHhhhhCeEEEecC
Q 032697 6 GKVFTLAEVSDHNNMKDCWLIINGKVYDVTKFLEDHPGGDEVLLSATGKDATDDFEDVGHSPS--AREMMDQYYVGEIDV 83 (135)
Q Consensus 6 ~~~~t~~ev~~h~~~~~~wvvi~g~VYDvT~f~~~HPGG~~~l~~~aG~D~T~~f~~~~Hs~~--a~~~l~~~~IG~l~~ 83 (135)
++.+|++++.+|++.++.|++|+| |||+|+|+.+||||+.+|..++|+|+|++|.+. |... |.+.|+.+.+|...+
T Consensus 7 ~~~~~we~~~~~~~~~~~W~~id~-vYd~s~~~~~HPGG~~~I~~~~g~DaTdaF~Af-H~~~~~~~~~l~~l~~~~~~p 84 (430)
T KOG4232|consen 7 PTTFSWEGKRKHDKAEGLWLVIDG-VYDISDWIKRHPGGSRVIEHYAGQDATDAFEAF-HPGTAFAYKHLKPLLIGELSP 84 (430)
T ss_pred ceeeeccchhhccCCCceEEEeec-cccHHHHHHhCCCchhHHHHhcCCccchHHHHh-CCChHHHHHHHHHHHcCCcCc
Confidence 458999999999999999999999 999999999999999999999999999999985 7654 788999999998876
Q ss_pred CC
Q 032697 84 ST 85 (135)
Q Consensus 84 ~~ 85 (135)
+.
T Consensus 85 e~ 86 (430)
T KOG4232|consen 85 EI 86 (430)
T ss_pred cc
Confidence 53
No 10
>COG4892 Predicted heme/steroid binding protein [General function prediction only]
Probab=98.96 E-value=1.4e-09 Score=69.54 Aligned_cols=75 Identities=28% Similarity=0.409 Sum_probs=56.3
Q ss_pred CCccCHHHHhcccCCC-CeEEEEcCEEeeccccccccCcchhHhhhhcCCCcchhhhhc-CCChHHHHhhhhCeEEEecC
Q 032697 6 GKVFTLAEVSDHNNMK-DCWLIINGKVYDVTKFLEDHPGGDEVLLSATGKDATDDFEDV-GHSPSAREMMDQYYVGEIDV 83 (135)
Q Consensus 6 ~~~~t~~ev~~h~~~~-~~wvvi~g~VYDvT~f~~~HPGG~~~l~~~aG~D~T~~f~~~-~Hs~~a~~~l~~~~IG~l~~ 83 (135)
+++||++|+.+.|..+ ..+|+++|+||||+.- ...-+|..--..-+|+|+|++|++. .|..+..+.+.. ||.+..
T Consensus 1 mrefTLEELs~ynG~nGpaYiA~~G~VYDvS~s-~~W~dGtHqglhsaG~DLs~~~~~~aphg~eil~~~Pv--VG~L~k 77 (81)
T COG4892 1 MREFTLEELSKYNGENGPAYIAVNGTVYDVSLS-PSWGDGTHQGLHSAGKDLSSEFNSCAPHGMEILTSLPV--VGALIK 77 (81)
T ss_pred CceecHHHHHhhcCCCCCeEEEECCEEEeeccC-cccCCCccccccccchhHHHHHhhcCCchhHHHhcCch--hheeec
Confidence 4679999999999765 6999999999999872 2345566555667999999999953 566555554443 787754
No 11
>KOG1110 consensus Putative steroid membrane receptor Hpr6.6/25-Dx [General function prediction only]
Probab=97.67 E-value=5.8e-05 Score=56.47 Aligned_cols=53 Identities=38% Similarity=0.477 Sum_probs=42.1
Q ss_pred CccCHHHHhcccCCC---CeEEEEcCEEeeccccc-cccCcchhHhhhhcCCCcchhhh
Q 032697 7 KVFTLAEVSDHNNMK---DCWLIINGKVYDVTKFL-EDHPGGDEVLLSATGKDATDDFE 61 (135)
Q Consensus 7 ~~~t~~ev~~h~~~~---~~wvvi~g~VYDvT~f~-~~HPGG~~~l~~~aG~D~T~~f~ 61 (135)
+.||.+||++.++.+ ..+++|+|+|||||.=. -.-|||.- -.+||+|+|....
T Consensus 56 ~dfT~eEL~~ydGs~~d~~Il~AI~G~VYDVT~Gr~FYGp~GpY--~~fAG~DASR~La 112 (183)
T KOG1110|consen 56 RDFTVEELRQYDGSDPDKPILLAINGKVYDVTRGREFYGPGGPY--SLFAGKDASRGLA 112 (183)
T ss_pred cccCHHHHHhcCCCCCCCceEEEecceEEEecCCccccCCCCCc--hhhcccchHHHHH
Confidence 479999999998765 48899999999998622 25788864 3469999998764
No 12
>KOG1108 consensus Predicted heme/steroid binding protein [General function prediction only]
Probab=97.42 E-value=0.00013 Score=56.71 Aligned_cols=57 Identities=30% Similarity=0.450 Sum_probs=44.5
Q ss_pred CCCccCHHHHhcccCCC---CeEEEEcCEEeeccccccccCcchhHhhhhcCCCcchhhhh
Q 032697 5 DGKVFTLAEVSDHNNMK---DCWLIINGKVYDVTKFLEDHPGGDEVLLSATGKDATDDFED 62 (135)
Q Consensus 5 ~~~~~t~~ev~~h~~~~---~~wvvi~g~VYDvT~f~~~HPGG~~~l~~~aG~D~T~~f~~ 62 (135)
+.+.||++||++.|+.+ ..++.|=|.||||+.= ..|=|.-.--..+||+|+|.+|-.
T Consensus 58 ~k~lFtpeeLa~fnGt~e~~piyLaiLGsVfdVs~g-k~hYgsG~sYnhFaGRDASrAFvs 117 (281)
T KOG1108|consen 58 DKILFTPEELAKFNGTEEGRPIYLAILGSVFDVSRG-KKHYGSGCSYNHFAGRDASRAFVS 117 (281)
T ss_pred CceeeCHHHHhhccCCCCCCceeeeeeceeeeccCC-eeeeCCCCCcccccccccchheec
Confidence 45699999999998754 4889999999999973 345443334678999999999854
No 13
>PF14901 Jiv90: Cleavage inducing molecular chaperone
Probab=89.39 E-value=0.21 Score=33.78 Aligned_cols=14 Identities=43% Similarity=0.914 Sum_probs=12.1
Q ss_pred EEcCEEeecccccc
Q 032697 26 IINGKVYDVTKFLE 39 (135)
Q Consensus 26 vi~g~VYDvT~f~~ 39 (135)
..+|+|||+|+|+.
T Consensus 60 c~~g~VyDiTeWA~ 73 (94)
T PF14901_consen 60 CMDGKVYDITEWAT 73 (94)
T ss_pred EcCceEEehhhhhh
Confidence 56999999999973
No 14
>PRK14758 hypothetical protein; Provisional
Probab=67.02 E-value=15 Score=18.94 Aligned_cols=20 Identities=25% Similarity=0.517 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 032697 114 QFLVPLAILGLAVGIRIYTK 133 (135)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~ 133 (135)
.+++.+.|+...++.++|++
T Consensus 8 EliLivlIlCalia~~fy~s 27 (27)
T PRK14758 8 EFILIILILCALIAARFYLS 27 (27)
T ss_pred HHHHHHHHHHHHHHHHhccC
Confidence 34555566666778888764
No 15
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=64.36 E-value=3.6 Score=35.31 Aligned_cols=17 Identities=35% Similarity=0.749 Sum_probs=13.7
Q ss_pred eEEEEcCEEeecccccc
Q 032697 23 CWLIINGKVYDVTKFLE 39 (135)
Q Consensus 23 ~wvvi~g~VYDvT~f~~ 39 (135)
.++.-||+|||+|+|+.
T Consensus 379 yy~c~DgkVYDITeWA~ 395 (490)
T KOG0720|consen 379 YYACMDGKVYDITEWAI 395 (490)
T ss_pred eeeecCCceEeehhhhh
Confidence 34567999999999983
No 16
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=59.29 E-value=0.89 Score=32.02 Aligned_cols=30 Identities=17% Similarity=0.409 Sum_probs=23.9
Q ss_pred EeeccccccccCcchhHhhhhcCCCcchhh
Q 032697 31 VYDVTKFLEDHPGGDEVLLSATGKDATDDF 60 (135)
Q Consensus 31 VYDvT~f~~~HPGG~~~l~~~aG~D~T~~f 60 (135)
-+|+..|+..||.|..++....+++.--.+
T Consensus 65 c~Dig~~vr~~p~gr~ii~~lg~K~~vM~L 94 (119)
T PF11698_consen 65 CHDIGEFVRHYPNGRNIIEKLGAKERVMEL 94 (119)
T ss_dssp HHHHHHHHHH-GGGHHHHHHHSHHHHHHHH
T ss_pred hcchHHHHHHChhHHHHHHhcChHHHHHHH
Confidence 389999999999999999988888654443
No 17
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=44.97 E-value=4.6 Score=34.31 Aligned_cols=40 Identities=18% Similarity=0.321 Sum_probs=31.5
Q ss_pred CCCeEEEEcCEEeeccccccccCcchhHhhhhcCCCcchhhh
Q 032697 20 MKDCWLIINGKVYDVTKFLEDHPGGDEVLLSATGKDATDDFE 61 (135)
Q Consensus 20 ~~~~wvvi~g~VYDvT~f~~~HPGG~~~l~~~aG~D~T~~f~ 61 (135)
.+..+++|- -+|+.+|+..||.|..++....||+.--.+-
T Consensus 366 ~d~~~laVA--c~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm 405 (429)
T cd00256 366 VDPIILAVA--CHDIGEYVRHYPRGKDVVEQLGGKQRVMRLL 405 (429)
T ss_pred CCcceeehh--hhhHHHHHHHCccHHHHHHHcCcHHHHHHHh
Confidence 345677666 4899999999999999999998886644443
No 18
>PHA02131 hypothetical protein
Probab=44.84 E-value=16 Score=22.48 Aligned_cols=30 Identities=27% Similarity=0.677 Sum_probs=19.9
Q ss_pred CccCHHHHhcccC------------CC-CeEEEE-cCEEeeccc
Q 032697 7 KVFTLAEVSDHNN------------MK-DCWLII-NGKVYDVTK 36 (135)
Q Consensus 7 ~~~t~~ev~~h~~------------~~-~~wvvi-~g~VYDvT~ 36 (135)
+.|.++-+++-|+ .+ .||+.+ +|+|-|+|=
T Consensus 2 kiyhpqhiakvngitkvdmirgh~~~g~~c~imfk~~~v~dctf 45 (70)
T PHA02131 2 KIYHPQHIAKVNGITKVDMIRGHYRFGISCWIMFKNDQVIDCTF 45 (70)
T ss_pred cccchhHhhhhcCceEEEEeccceecceEEEEEEcCCCEEEeee
Confidence 4456666666543 22 599976 788999873
No 19
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=38.21 E-value=83 Score=20.28 Aligned_cols=25 Identities=28% Similarity=0.514 Sum_probs=17.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHH
Q 032697 105 TSEFIIRLLQFLVPLAILGLAVGIR 129 (135)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (135)
.-+|..+.+..+.|+.|+++.+.++
T Consensus 19 P~~Fl~~vll~LtPlfiisa~lSwk 43 (74)
T PF15086_consen 19 PYEFLTTVLLILTPLFIISAVLSWK 43 (74)
T ss_pred hHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3466667777888988888766554
No 20
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=37.64 E-value=23 Score=25.15 Aligned_cols=13 Identities=38% Similarity=0.491 Sum_probs=11.1
Q ss_pred eEEEEcCEEeecc
Q 032697 23 CWLIINGKVYDVT 35 (135)
Q Consensus 23 ~wvvi~g~VYDvT 35 (135)
.-|.+||++|||+
T Consensus 5 ~~itvng~~y~V~ 17 (130)
T PRK06549 5 FKITIDGKEYLVE 17 (130)
T ss_pred EEEEECCEEEEEE
Confidence 4578999999996
No 21
>PF12955 DUF3844: Domain of unknown function (DUF3844); InterPro: IPR024382 This presumed domain is found in fungal species. It contains 8 largely conserved cysteine residues. This domain is found in proteins thought to be located in the endoplasmic reticulum.
Probab=36.31 E-value=71 Score=21.90 Aligned_cols=27 Identities=15% Similarity=0.154 Sum_probs=13.9
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032697 103 DKTSEFIIRLLQFLVPLAILGLAVGIRIY 131 (135)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (135)
+-+.++|+ +.+...++++++++++..+
T Consensus 63 DvS~~F~L--~~~~ti~lv~~~~~~I~lL 89 (103)
T PF12955_consen 63 DVSVPFWL--FAGFTIALVVLVAGAIGLL 89 (103)
T ss_pred cccchhhH--HHHHHHHHHHHHHHHHHHH
Confidence 45777775 3334444445555555533
No 22
>PRK00159 putative septation inhibitor protein; Reviewed
Probab=35.81 E-value=1.1e+02 Score=20.40 Aligned_cols=19 Identities=26% Similarity=0.427 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 032697 115 FLVPLAILGLAVGIRIYTK 133 (135)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~ 133 (135)
+++.+.+++++-.+.||+.
T Consensus 36 ~m~glm~~GllWlvvyYl~ 54 (87)
T PRK00159 36 LMLGLMLIGLAWLVVNYLA 54 (87)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 3445667777766667765
No 23
>PF06781 UPF0233: Uncharacterised protein family (UPF0233); InterPro: IPR009619 This is a group of proteins of unknown function.
Probab=33.67 E-value=1.1e+02 Score=20.37 Aligned_cols=20 Identities=25% Similarity=0.426 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHhcC
Q 032697 115 FLVPLAILGLAVGIRIYTKS 134 (135)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~ 134 (135)
+++.+.+++++-.+.||+.+
T Consensus 36 ~m~~lmllGL~WiVvyYi~~ 55 (87)
T PF06781_consen 36 LMLGLMLLGLLWIVVYYISG 55 (87)
T ss_pred HHHHHHHHHHHHHhhhhccc
Confidence 34556667776666677654
No 24
>COG3424 BcsA Predicted naringenin-chalcone synthase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=31.76 E-value=18 Score=29.80 Aligned_cols=36 Identities=17% Similarity=0.372 Sum_probs=21.1
Q ss_pred ccCcchhHhhhhcCC-CcchhhhhcCCChHHHHhhhhCeEEEec
Q 032697 40 DHPGGDEVLLSATGK-DATDDFEDVGHSPSAREMMDQYYVGEID 82 (135)
Q Consensus 40 ~HPGG~~~l~~~aG~-D~T~~f~~~~Hs~~a~~~l~~~~IG~l~ 82 (135)
-||||.++|..+.+. .+++.... ..++.|.+ +|++.
T Consensus 276 ~HPGG~KVida~~~sLgls~e~l~-----~s~~~L~~--~GNMS 312 (356)
T COG3424 276 VHPGGPKVIDAYEESLGLSPEALE-----LSWDVLRE--YGNMS 312 (356)
T ss_pred eCCCCchHHHHHHHhcCCCHHHHH-----HHHHHHHH--hCCcc
Confidence 699999999887654 33333211 12445555 56654
No 25
>TIGR02148 Fibro_Slime fibro-slime domain. This model represents a conserved region of about 90 amino acids, shared in at least 4 distinct large putative proteins from the slime mold Dictyostelium discoideum and 10 proteins from the rumen bacterium Fibrobacter succinogenes, and in no other species so far. We propose here the name fibro-slime domain
Probab=27.82 E-value=49 Score=22.16 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=17.1
Q ss_pred hcccCCCCeEEEEcCE-Eeecccc
Q 032697 15 SDHNNMKDCWLIINGK-VYDVTKF 37 (135)
Q Consensus 15 ~~h~~~~~~wvvi~g~-VYDvT~f 37 (135)
=+-.+.+|.||-|+|+ |-|+-.-
T Consensus 22 F~F~GDDDvWVFIn~kLv~DlGG~ 45 (90)
T TIGR02148 22 FEFRGDDDVWVFINNKLVVDIGGQ 45 (90)
T ss_pred EEEEcCCeEEEEECCEEEEEccCc
Confidence 3345788999999997 6777553
No 26
>PF10618 Tail_tube: Phage tail tube protein; InterPro: IPR019596 This entry is represented by Bacteriophage Mu, GpM tail tube protein. Bacteriophage Mu has an eicosahedral head and contractile tail. The tail is composed of an outer sheath and an inner tube.
Probab=27.54 E-value=58 Score=22.62 Aligned_cols=25 Identities=20% Similarity=0.365 Sum_probs=21.8
Q ss_pred CCeEEEEcCEEeeccccccccCcch
Q 032697 21 KDCWLIINGKVYDVTKFLEDHPGGD 45 (135)
Q Consensus 21 ~~~wvvi~g~VYDvT~f~~~HPGG~ 45 (135)
+.++|.+||+.|++.+=....|||.
T Consensus 7 G~a~i~vdG~~l~~~~g~~~~~gg~ 31 (119)
T PF10618_consen 7 GTAYIRVDGQQLPVKGGATYNPGGV 31 (119)
T ss_pred EEEEEEECCEEEEccCCeEECCCCe
Confidence 5689999999999997788889884
No 27
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=27.39 E-value=14 Score=31.42 Aligned_cols=34 Identities=21% Similarity=0.382 Sum_probs=28.5
Q ss_pred CCeEEEEcCEEeeccccccccCcchhHhhhhcCCCc
Q 032697 21 KDCWLIINGKVYDVTKFLEDHPGGDEVLLSATGKDA 56 (135)
Q Consensus 21 ~~~wvvi~g~VYDvT~f~~~HPGG~~~l~~~aG~D~ 56 (135)
+..|+++- -.|+++|++.+|.|..++..+.|+..
T Consensus 380 Dp~iL~VA--c~DIge~Vr~yP~gk~vv~k~ggKe~ 413 (442)
T KOG2759|consen 380 DPIILCVA--CHDIGEYVRHYPEGKAVVEKYGGKER 413 (442)
T ss_pred CCceeehh--hhhHHHHHHhCchHhHHHHHhchHHH
Confidence 45677665 47999999999999999999999943
No 28
>PRK02251 putative septation inhibitor protein; Reviewed
Probab=26.98 E-value=1.8e+02 Score=19.33 Aligned_cols=19 Identities=32% Similarity=0.485 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 032697 115 FLVPLAILGLAVGIRIYTK 133 (135)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~ 133 (135)
+++.+.+++++-.+.||+.
T Consensus 37 ~m~~lm~~Gl~WlvvyYl~ 55 (87)
T PRK02251 37 LFVALMIIGLIWLVVYYLS 55 (87)
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 3455667777777777764
No 29
>PF05521 Phage_H_T_join: Phage head-tail joining protein ; InterPro: IPR008767 This entry describes the head-tail adaptor protein of bacteriophage SPP1 and related proteins in other bacteriophage and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg7 (RCAP_rcc01689) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2KCA_A 2KZ4_A.
Probab=26.91 E-value=72 Score=19.81 Aligned_cols=18 Identities=28% Similarity=0.506 Sum_probs=12.7
Q ss_pred CCeEEEEcCEEeeccccc
Q 032697 21 KDCWLIINGKVYDVTKFL 38 (135)
Q Consensus 21 ~~~wvvi~g~VYDvT~f~ 38 (135)
.+..|.++|++|++....
T Consensus 65 ~~~ri~~~g~~y~I~~i~ 82 (95)
T PF05521_consen 65 PDMRIKYDGKVYNIKSID 82 (95)
T ss_dssp TTEEEEECTEEEEE-S--
T ss_pred cceEEEECCEEEEEEEEC
Confidence 356688999999998853
No 30
>COG3197 FixS Uncharacterized protein, possibly involved in nitrogen fixation [Inorganic ion transport and metabolism]
Probab=24.15 E-value=69 Score=19.72 Aligned_cols=15 Identities=47% Similarity=0.696 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHH
Q 032697 114 QFLVPLAILGLAVGI 128 (135)
Q Consensus 114 ~~~~~~~~~~~~~~~ 128 (135)
.+++|++|+..++++
T Consensus 5 ~~Lipvsi~l~~v~l 19 (58)
T COG3197 5 YILIPVSILLGAVGL 19 (58)
T ss_pred eeHHHHHHHHHHHHH
Confidence 357887765544443
No 31
>KOG4298 consensus CAP-binding protein complex interacting protein 2 [RNA processing and modification]
Probab=24.14 E-value=67 Score=24.73 Aligned_cols=18 Identities=28% Similarity=0.637 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 032697 115 FLVPLAILGLAVGIRIYT 132 (135)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~ 132 (135)
+++|+.++.++|++++|-
T Consensus 188 ilvPvgliFvvFa~hfyr 205 (245)
T KOG4298|consen 188 ILVPVGLIFVVFAIHFYR 205 (245)
T ss_pred hhhhhhHHHHHHHHHHHH
Confidence 466777777777777764
No 32
>TIGR00847 ccoS cytochrome oxidase maturation protein, cbb3-type. CcoS from Rhodobacter capsulatus has been shown essential for incorporation of redox-active prosthetic groups (heme, Cu) into cytochrome cbb(3) oxidase. FixS of Bradyrhizobium japonicum appears to have the same function. Members of this family are found so far in organisms with a cbb3-type cytochrome oxidase, including Neisseria meningitidis, Helicobacter pylori, Campylobacter jejuni, Caulobacter crescentus, Bradyrhizobium japonicum, and Rhodobacter capsulatus.
Probab=22.98 E-value=1.5e+02 Score=17.63 Aligned_cols=11 Identities=27% Similarity=0.534 Sum_probs=6.4
Q ss_pred HHHHHHHHHHH
Q 032697 114 QFLVPLAILGL 124 (135)
Q Consensus 114 ~~~~~~~~~~~ 124 (135)
.+++|++++..
T Consensus 5 ~~LIpiSl~l~ 15 (51)
T TIGR00847 5 TILIPISLLLG 15 (51)
T ss_pred HHHHHHHHHHH
Confidence 45778665443
No 33
>PF14654 Epiglycanin_C: Mucin, catalytic, TM and cytoplasmic tail region
Probab=22.23 E-value=1.9e+02 Score=19.80 Aligned_cols=15 Identities=20% Similarity=0.461 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHhc
Q 032697 119 LAILGLAVGIRIYTK 133 (135)
Q Consensus 119 ~~~~~~~~~~~~~~~ 133 (135)
++.+++..++.+|.+
T Consensus 29 vvavGl~aGLfFcvR 43 (106)
T PF14654_consen 29 VVAVGLFAGLFFCVR 43 (106)
T ss_pred HHHHHHHHHHHHHhh
Confidence 334445555667664
No 34
>PHA02844 putative transmembrane protein; Provisional
Probab=21.83 E-value=2.4e+02 Score=18.26 Aligned_cols=10 Identities=20% Similarity=0.129 Sum_probs=4.6
Q ss_pred HHHHHHHHhc
Q 032697 124 LAVGIRIYTK 133 (135)
Q Consensus 124 ~~~~~~~~~~ 133 (135)
+++..++|++
T Consensus 61 ~~~~~flYLK 70 (75)
T PHA02844 61 ATFLTFLYLK 70 (75)
T ss_pred HHHHHHHHHh
Confidence 3444445543
No 35
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=21.47 E-value=1.3e+02 Score=22.86 Aligned_cols=20 Identities=15% Similarity=0.325 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 032697 114 QFLVPLAILGLAVGIRIYTK 133 (135)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~ 133 (135)
.+.+.|++++|+|.+|.|.+
T Consensus 166 GIVL~LGv~aI~ff~~KF~k 185 (186)
T PF05283_consen 166 GIVLTLGVLAIIFFLYKFCK 185 (186)
T ss_pred HHHHHHHHHHHHHHHhhhcc
Confidence 45566777777666664443
No 36
>PF02797 Chal_sti_synt_C: Chalcone and stilbene synthases, C-terminal domain; InterPro: IPR012328 Synonym(s): Chalcone synthase, Flavonone synthase, 6'-deoxychalcone synthase Naringenin-chalcone synthases (2.3.1.74 from EC) and stilbene synthases (STS) (formerly known as resveratrol synthases) are related plant enzymes. CHS is an important enzyme in flavanoid biosynthesis and STS is a key enzyme in stilbene-type phyloalexin biosynthesis. Both enzymes catalyze the addition of three molecules of malonyl-CoA to a starter CoA ester (a typical example is 4-coumaroyl-CoA), producing either a chalcone (with CHS) or stilbene (with STS) []. These enzymes have a conserved cysteine residue, located in the central section of the protein sequence, which is essential for the catalytic activity of both enzymes and probably represents the binding site for the 4-coumaryl-CoA group []. This domain of chalcone synthase is reported to be structurally similar to domains in thiolase and beta-ketoacyl synthase. The differences in activity are accounted for by differences in the N-terminal domain. ; GO: 0016746 transferase activity, transferring acyl groups; PDB: 3OV2_A 3OV3_B 1Z1F_A 1Z1E_A 3ALE_C 3OIT_A 2H84_A 1TEE_D 1TED_A 2P0U_A ....
Probab=21.41 E-value=39 Score=24.46 Aligned_cols=18 Identities=33% Similarity=0.632 Sum_probs=12.2
Q ss_pred cccccCcchhHhhhhcCC
Q 032697 37 FLEDHPGGDEVLLSATGK 54 (135)
Q Consensus 37 f~~~HPGG~~~l~~~aG~ 54 (135)
|.--||||.++|......
T Consensus 62 ~wavHPGG~~ILd~v~~~ 79 (151)
T PF02797_consen 62 FWAVHPGGRKILDAVEEA 79 (151)
T ss_dssp EEEEE-SSHHHHHHHHHH
T ss_pred eeeecCChHHHHHHHHHH
Confidence 344699999999876533
No 37
>PHA03054 IMV membrane protein; Provisional
Probab=20.81 E-value=1.8e+02 Score=18.62 Aligned_cols=13 Identities=38% Similarity=0.450 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHhc
Q 032697 121 ILGLAVGIRIYTK 133 (135)
Q Consensus 121 ~~~~~~~~~~~~~ 133 (135)
++.+++..++|++
T Consensus 58 v~~~~l~~flYLK 70 (72)
T PHA03054 58 VLILLLLIYLYLK 70 (72)
T ss_pred HHHHHHHHHHHHh
Confidence 3344455556654
No 38
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=20.81 E-value=3.1e+02 Score=22.65 Aligned_cols=10 Identities=30% Similarity=0.435 Sum_probs=4.9
Q ss_pred HHHHHHHHHH
Q 032697 122 LGLAVGIRIY 131 (135)
Q Consensus 122 ~~~~~~~~~~ 131 (135)
++++.++++|
T Consensus 41 ~alg~~~~~~ 50 (372)
T PF04375_consen 41 LALGAGGWYW 50 (372)
T ss_pred HHHHHHHHHH
Confidence 4445455544
No 39
>PF07533 BRK: BRK domain; InterPro: IPR006576 BRK is a domain of unknown function found only in the metazoa and in association with CHROMO domain (IPR000953 from INTERPRO) and DEAD/DEAH box helicase domain (IPR011545 from INTERPRO).; GO: 0005515 protein binding, 0016817 hydrolase activity, acting on acid anhydrides; PDB: 2DL6_A 2CKA_A 2V0F_A 2V0E_A 2CKC_A.
Probab=20.40 E-value=19 Score=20.99 Aligned_cols=14 Identities=36% Similarity=0.843 Sum_probs=9.9
Q ss_pred EeeccccccccCcc
Q 032697 31 VYDVTKFLEDHPGG 44 (135)
Q Consensus 31 VYDvT~f~~~HPGG 44 (135)
.=++..|+..|||=
T Consensus 27 ~~~L~~WL~~~P~y 40 (46)
T PF07533_consen 27 LKELEEWLEEHPGY 40 (46)
T ss_dssp CCCHHHHHHH-TTE
T ss_pred HHHHHHHHHHCcCc
Confidence 34788899999983
Done!