Query 032697
Match_columns 135
No_of_seqs 162 out of 1363
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 07:17:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032697.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032697hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ibj_A Cytochrome B5, CYTB5; F 100.0 5.9E-31 2E-35 175.3 6.6 85 1-85 1-85 (88)
2 3ner_A Cytochrome B5 type B; h 100.0 2.5E-30 8.4E-35 173.8 7.6 82 5-86 8-89 (92)
3 1cyo_A Cytochrome B5; electron 100.0 3.7E-30 1.3E-34 173.2 7.4 82 5-86 3-84 (93)
4 1cxy_A Cytochrome B5; helix, b 100.0 1.8E-29 6.1E-34 168.9 7.7 83 1-83 2-88 (90)
5 1hko_A Cytochrome B5; electron 100.0 4.4E-29 1.5E-33 171.1 9.2 84 5-88 7-90 (104)
6 3lf5_A Cytochrome B5 reductase 100.0 1.2E-29 4E-34 169.2 4.8 80 5-84 4-83 (88)
7 1x3x_A Cytochrome B5; hemoprot 99.9 2.3E-28 7.9E-33 160.8 5.4 76 6-82 3-82 (82)
8 1mj4_A Sulfite oxidase; cytoch 99.9 4.4E-28 1.5E-32 159.5 5.7 76 5-81 3-82 (82)
9 2keo_A Probable E3 ubiquitin-p 99.9 5.6E-29 1.9E-33 172.5 -1.0 81 5-85 22-102 (112)
10 1sox_A Sulfite oxidase; oxidor 99.9 4.5E-22 1.5E-26 166.2 10.5 81 5-86 3-87 (466)
11 1kbi_A Cytochrome B2, L-LCR; f 99.9 4.7E-22 1.6E-26 167.7 7.4 82 5-87 7-90 (511)
12 1j03_A Putative steroid bindin 99.7 9.1E-19 3.1E-23 119.3 5.1 60 6-67 2-65 (102)
13 4hkr_A Calcium release-activat 37.3 19 0.00066 26.7 2.4 18 115-132 153-170 (214)
14 1ho8_A Vacuolar ATP synthase s 26.8 4.8 0.00016 33.5 -2.7 34 31-66 426-459 (480)
No 1
>2ibj_A Cytochrome B5, CYTB5; FLY cytochrome B5, X-RAY diffraction, heme, electron transport; HET: HEM; 1.55A {Musca domestica}
Probab=99.97 E-value=5.9e-31 Score=175.34 Aligned_cols=85 Identities=56% Similarity=0.920 Sum_probs=79.3
Q ss_pred CCCCCCCccCHHHHhcccCCCCeEEEEcCEEeeccccccccCcchhHhhhhcCCCcchhhhhcCCChHHHHhhhhCeEEE
Q 032697 1 MGGGDGKVFTLAEVSDHNNMKDCWLIINGKVYDVTKFLEDHPGGDEVLLSATGKDATDDFEDVGHSPSAREMMDQYYVGE 80 (135)
Q Consensus 1 m~~~~~~~~t~~ev~~h~~~~~~wvvi~g~VYDvT~f~~~HPGG~~~l~~~aG~D~T~~f~~~~Hs~~a~~~l~~~~IG~ 80 (135)
|++.+.+.||++||++|++.++|||+|+|+|||||+|+..||||..+|+.++|+|+|+.|..++||..|+++|++|+||+
T Consensus 1 m~~~~~~~~t~~ev~~h~~~~~~wv~i~g~VYDvT~f~~~HPGG~~~i~~~aG~DaT~~f~~~~Hs~~a~~~L~~~~IG~ 80 (88)
T 2ibj_A 1 MSSEDVKYFTRAEVAKNNTKDKNWFIIHNNVYDVTAFLNEHPGGEEVLIEQAGKDATEHFEDVGHSSDAREMMKQYKVGE 80 (88)
T ss_dssp --CCCCCEECHHHHHTSEETTEEEEEETTEEEECGGGTTTCTTCSHHHHTTTTEECHHHHHHHTCCHHHHHHHGGGEEEE
T ss_pred CCCccCCccCHHHHHHhCCCCCEEEEECCEEEECCcchhhCcCHHHHHHHhCCCcchHHHHHcCCCHHHHHHHHcCceEE
Confidence 77878899999999999999999999999999999999999999999999999999999998889999999999999999
Q ss_pred ecCCC
Q 032697 81 IDVST 85 (135)
Q Consensus 81 l~~~~ 85 (135)
+.+++
T Consensus 81 l~~~~ 85 (88)
T 2ibj_A 81 LVAEE 85 (88)
T ss_dssp ECGGG
T ss_pred eCccc
Confidence 97543
No 2
>3ner_A Cytochrome B5 type B; heme, electron transport; HET: HEM; 1.45A {Homo sapiens} SCOP: d.120.1.1 PDB: 1awp_A* 3mus_A* 1b5m_A* 1eue_A* 1icc_A* 1lj0_A* 2i89_A*
Probab=99.96 E-value=2.5e-30 Score=173.78 Aligned_cols=82 Identities=54% Similarity=1.031 Sum_probs=78.1
Q ss_pred CCCccCHHHHhcccCCCCeEEEEcCEEeeccccccccCcchhHhhhhcCCCcchhhhhcCCChHHHHhhhhCeEEEecCC
Q 032697 5 DGKVFTLAEVSDHNNMKDCWLIINGKVYDVTKFLEDHPGGDEVLLSATGKDATDDFEDVGHSPSAREMMDQYYVGEIDVS 84 (135)
Q Consensus 5 ~~~~~t~~ev~~h~~~~~~wvvi~g~VYDvT~f~~~HPGG~~~l~~~aG~D~T~~f~~~~Hs~~a~~~l~~~~IG~l~~~ 84 (135)
+.+.||++||++|++.++|||+|+|+|||||+|+..||||..+|+.++|+|+|+.|+.++||..|+++|++|+||+|.++
T Consensus 8 ~~~~~t~~Ev~~h~~~~~~wv~i~g~VYDvT~f~~~HPGG~~~l~~~aG~DaT~~F~~~~Hs~~a~~~L~~~~IG~l~~~ 87 (92)
T 3ner_A 8 SVTYYRLEEVAKRNSLKELWLVIHGRVYDVTRFLNEHPGGEEVLLEQAGVDASESFEDVGHSSDAREMLKQYYIGDIHPS 87 (92)
T ss_dssp CSCEECHHHHTTCEETTEEEEEETTEEEECGGGTTTCTTCSHHHHTTTTSBCHHHHHHTTCCHHHHHHHGGGEEEEECGG
T ss_pred CCCeeCHHHHHhhCCCCCEEEEECCEEEEcccccccCCCHHHHHHHhcCCcchHHHHHcCCCHHHHHHHHhCeeEEEChH
Confidence 47899999999999999999999999999999999999999999999999999999988899999999999999999876
Q ss_pred CC
Q 032697 85 TI 86 (135)
Q Consensus 85 ~~ 86 (135)
+.
T Consensus 88 ~~ 89 (92)
T 3ner_A 88 DL 89 (92)
T ss_dssp GS
T ss_pred hc
Confidence 54
No 3
>1cyo_A Cytochrome B5; electron transport; HET: HEM; 1.50A {Bos taurus} SCOP: d.120.1.1 PDB: 1bfx_A* 1i87_A 1i8c_A 1iet_A 1ieu_A 1do9_A* 1aqa_A* 1aw3_A* 1axx_A* 1b5a_A* 1b5b_A* 1blv_A* 1mny_A* 2axx_A* 1ib7_A* 1jex_A* 1ehb_A* 1nx7_A* 1u9u_A* 1m20_A* ...
Probab=99.96 E-value=3.7e-30 Score=173.20 Aligned_cols=82 Identities=52% Similarity=0.901 Sum_probs=77.8
Q ss_pred CCCccCHHHHhcccCCCCeEEEEcCEEeeccccccccCcchhHhhhhcCCCcchhhhhcCCChHHHHhhhhCeEEEecCC
Q 032697 5 DGKVFTLAEVSDHNNMKDCWLIINGKVYDVTKFLEDHPGGDEVLLSATGKDATDDFEDVGHSPSAREMMDQYYVGEIDVS 84 (135)
Q Consensus 5 ~~~~~t~~ev~~h~~~~~~wvvi~g~VYDvT~f~~~HPGG~~~l~~~aG~D~T~~f~~~~Hs~~a~~~l~~~~IG~l~~~ 84 (135)
+.+.||++||++|++.++|||+|+|+|||||+|+..||||..+|+.++|+|+|+.|..++||..|+++|++|+||++...
T Consensus 3 ~~~~~t~~Ev~~h~~~~~~wv~i~g~VYDvT~f~~~HPGG~~~i~~~aG~DaT~~f~~~~Hs~~a~~~L~~~~IG~l~~~ 82 (93)
T 1cyo_A 3 AVKYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELSKTFIIGELHPD 82 (93)
T ss_dssp SCCEECHHHHTTCEETTEEEEEETTEEEECTTTTTTCTTCSHHHHHHTTSBCHHHHHHTTCCHHHHHHHTTTEEEEECGG
T ss_pred CCCccCHHHHHhhCCCCCEEEEECCEEEECCCcchhCcChHHHHHHhcCccchHHHHHcCCCHHHHHHHHhCeeEEecCc
Confidence 47899999999999999999999999999999999999999999999999999999998899999999999999999865
Q ss_pred CC
Q 032697 85 TI 86 (135)
Q Consensus 85 ~~ 86 (135)
+.
T Consensus 83 ~~ 84 (93)
T 1cyo_A 83 DR 84 (93)
T ss_dssp GG
T ss_pred cc
Confidence 44
No 4
>1cxy_A Cytochrome B5; helix, beta-strand, electron transport; HET: HEM; 1.65A {Ectothiorhodospira shaposhnikovii} SCOP: d.120.1.1
Probab=99.96 E-value=1.8e-29 Score=168.87 Aligned_cols=83 Identities=34% Similarity=0.716 Sum_probs=74.3
Q ss_pred CCCCCCCccCHHHHhcccCCCCeEEEEcCEEeeccccccccCcchhHhhhhcCCCcchhhh----hcCCChHHHHhhhhC
Q 032697 1 MGGGDGKVFTLAEVSDHNNMKDCWLIINGKVYDVTKFLEDHPGGDEVLLSATGKDATDDFE----DVGHSPSAREMMDQY 76 (135)
Q Consensus 1 m~~~~~~~~t~~ev~~h~~~~~~wvvi~g~VYDvT~f~~~HPGG~~~l~~~aG~D~T~~f~----~~~Hs~~a~~~l~~~ 76 (135)
|.+.+.+.||++||++|++.++|||+|+|+|||||+|+..||||..+|+.++|+|+|+.|. ...||..|+++|++|
T Consensus 2 ~~~~~~~~~t~~Ev~~h~~~~~~wv~i~g~VYDvT~f~~~HPGG~~~i~~~aG~DaT~~f~~~~~~~~Hs~~a~~~L~~~ 81 (90)
T 1cxy_A 2 ETEATLPVFTLEQVAEHHSPDDCWMAIHGKVYDLTPYVPNHPGPAGMMLVWCGQESTEAWETKSYGEPHSSLAARLLQRY 81 (90)
T ss_dssp ----CCCBCCHHHHTTCEETTEEEEEETTEEEECTTTGGGCCSSTTTTGGGTTSBCHHHHHHTTTTCCCCHHHHHHHHHT
T ss_pred cccccCCCcCHHHHHHhcCCCCEEEEECCEEEECccchhhCcChHHHHHHHCCcchhHHHhhcccccCCCHHHHHHHHhC
Confidence 4555678999999999999999999999999999999999999999999999999999999 468999999999999
Q ss_pred eEEEecC
Q 032697 77 YVGEIDV 83 (135)
Q Consensus 77 ~IG~l~~ 83 (135)
+||++++
T Consensus 82 ~IG~l~~ 88 (90)
T 1cxy_A 82 LIGTLEE 88 (90)
T ss_dssp EEEEC--
T ss_pred ceeEeCC
Confidence 9999863
No 5
>1hko_A Cytochrome B5; electron transfer protein, heme, electron transport; HET: HEM; NMR {Bos taurus} SCOP: d.120.1.1 PDB: 2i96_A*
Probab=99.96 E-value=4.4e-29 Score=171.08 Aligned_cols=84 Identities=52% Similarity=0.894 Sum_probs=79.0
Q ss_pred CCCccCHHHHhcccCCCCeEEEEcCEEeeccccccccCcchhHhhhhcCCCcchhhhhcCCChHHHHhhhhCeEEEecCC
Q 032697 5 DGKVFTLAEVSDHNNMKDCWLIINGKVYDVTKFLEDHPGGDEVLLSATGKDATDDFEDVGHSPSAREMMDQYYVGEIDVS 84 (135)
Q Consensus 5 ~~~~~t~~ev~~h~~~~~~wvvi~g~VYDvT~f~~~HPGG~~~l~~~aG~D~T~~f~~~~Hs~~a~~~l~~~~IG~l~~~ 84 (135)
+.+.||++||++|++.++|||+|+|+|||||+|+..||||..+|+.++|+|+|+.|..++||..|+++|++|+||.|...
T Consensus 7 ~~~~~t~~Ev~~h~~~~~~wv~i~g~VYDvT~f~~~HPGG~~~i~~~aGkDaT~~F~~~~Hs~~a~~~L~~~~IG~l~~~ 86 (104)
T 1hko_A 7 AVKYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELSKTFIIGELHPD 86 (104)
T ss_dssp CCEEECHHHHHHCBSSSSBEEEETTEEEEHHHHSSSSSSCSHHHHTTCSEECHHHHTTTTCCHHHHHHHTTTEEEEECTT
T ss_pred cCCccCHHHHHHhcCCCCEEEEECCEEEECCcchhhCcChHHHHHHhcCccchHHHHHcCCCHHHHHHHHcCeeEEECCc
Confidence 47899999999999999999999999999999999999999999999999999999998899999999999999999876
Q ss_pred CCCC
Q 032697 85 TIPK 88 (135)
Q Consensus 85 ~~~~ 88 (135)
+.+.
T Consensus 87 ~~~~ 90 (104)
T 1hko_A 87 DRSK 90 (104)
T ss_dssp SSTT
T ss_pred cccc
Confidence 5443
No 6
>3lf5_A Cytochrome B5 reductase 4; NCB5OR, electron transfer, redox, heme, endoplasmic reticulu flavoprotein, iron, metal-binding, NAD, oxidoreductase; HET: HEM; 1.25A {Homo sapiens}
Probab=99.96 E-value=1.2e-29 Score=169.20 Aligned_cols=80 Identities=34% Similarity=0.658 Sum_probs=76.5
Q ss_pred CCCccCHHHHhcccCCCCeEEEEcCEEeeccccccccCcchhHhhhhcCCCcchhhhhcCCChHHHHhhhhCeEEEecCC
Q 032697 5 DGKVFTLAEVSDHNNMKDCWLIINGKVYDVTKFLEDHPGGDEVLLSATGKDATDDFEDVGHSPSAREMMDQYYVGEIDVS 84 (135)
Q Consensus 5 ~~~~~t~~ev~~h~~~~~~wvvi~g~VYDvT~f~~~HPGG~~~l~~~aG~D~T~~f~~~~Hs~~a~~~l~~~~IG~l~~~ 84 (135)
+++.||++||++|++.++|||+|+|+|||||+|++.||||.++|+.++|+|+|+.|+.+||+..++++|++|+||++..+
T Consensus 4 ~l~~~t~~Ev~~h~~~~~~wv~i~g~VYDvT~f~~~HPGG~~~l~~~aG~DaT~~F~~~h~~~~~~~~L~~~~IG~l~~~ 83 (88)
T 3lf5_A 4 RLIEVTEEELKKHNKKDDCWICIRGFVYNVSPYMEYHPGGEDELMRAAGSDGTELFDQVHRWVNYESMLKECLVGRMAIK 83 (88)
T ss_dssp SSEEECHHHHHHCEETTEEEEEETTEEEECGGGTTTCTTCHHHHHTTTTEECHHHHHHHHTTCCHHHHTGGGEEEEECCC
T ss_pred CCCEeCHHHHHhhCCCCCEEEEECCEEEECccchhhCcChhhhhhhcCCCcchHHHHHHCCcHHHHHHHHcCeeEEeCCC
Confidence 58899999999999999999999999999999999999999999999999999999999888889999999999999865
No 7
>1x3x_A Cytochrome B5; hemoprotein, porcine parasitic namatode, electron transport; HET: HEM; 1.80A {Ascaris suum}
Probab=99.95 E-value=2.3e-28 Score=160.84 Aligned_cols=76 Identities=34% Similarity=0.620 Sum_probs=72.9
Q ss_pred CCccCHHHHhcccCCCCeEEEEcCEEeeccccccccCcchhHhhhhcCCCcchh--hhhcC--CChHHHHhhhhCeEEEe
Q 032697 6 GKVFTLAEVSDHNNMKDCWLIINGKVYDVTKFLEDHPGGDEVLLSATGKDATDD--FEDVG--HSPSAREMMDQYYVGEI 81 (135)
Q Consensus 6 ~~~~t~~ev~~h~~~~~~wvvi~g~VYDvT~f~~~HPGG~~~l~~~aG~D~T~~--f~~~~--Hs~~a~~~l~~~~IG~l 81 (135)
.+.||++||++|++.++|||+|+|+|||||+|++.|||| ++|+.++|+|+|+. |++.+ ||..|+++|++|+||++
T Consensus 3 ~~~~t~~ev~~h~~~~~~wv~i~g~VYDvT~f~~~HPGG-~~i~~~aG~D~T~~~~F~~~h~~hs~~a~~~L~~~~IG~l 81 (82)
T 1x3x_A 3 DKKYTKEEVAKHNTQNDLWIIYDGEVHDMTSFYKEHPGG-KVILNKAGQDATSVLKTLAPHVKAADVVMKKLKQTCIGKV 81 (82)
T ss_dssp SCEECHHHHHTCEETTEEEEEETTEEEECGGGGGGCTTG-GGGGGGTTSBCHHHHHHSHHHHHTHHHHHHHHHHHEEEEE
T ss_pred CCccCHHHHHhhCCCCCEEEEECCEEEECCcchhhCcCh-hhhhhhCCCCCchhhhhhcccccchHHHHHHHHhCcceEe
Confidence 578999999999999999999999999999999999999 99999999999999 99998 89999999999999997
Q ss_pred c
Q 032697 82 D 82 (135)
Q Consensus 82 ~ 82 (135)
.
T Consensus 82 ~ 82 (82)
T 1x3x_A 82 K 82 (82)
T ss_dssp C
T ss_pred C
Confidence 4
No 8
>1mj4_A Sulfite oxidase; cytochrome B5, heme, oxidoreductase; HET: HEM; 1.20A {Homo sapiens} SCOP: d.120.1.1
Probab=99.94 E-value=4.4e-28 Score=159.55 Aligned_cols=76 Identities=34% Similarity=0.673 Sum_probs=69.4
Q ss_pred CCCccCHHHHhcccCCCC-eEEEEcCEEeeccccccccCcchhHhhhhcCCCcchhhhh---cCCChHHHHhhhhCeEEE
Q 032697 5 DGKVFTLAEVSDHNNMKD-CWLIINGKVYDVTKFLEDHPGGDEVLLSATGKDATDDFED---VGHSPSAREMMDQYYVGE 80 (135)
Q Consensus 5 ~~~~~t~~ev~~h~~~~~-~wvvi~g~VYDvT~f~~~HPGG~~~l~~~aG~D~T~~f~~---~~Hs~~a~~~l~~~~IG~ 80 (135)
+.+.||++||++|++.++ |||+|+|+|||||+|++.||||.+.|+.++|+| |+.|.. .+||..|+++|++|+||+
T Consensus 3 ~~~~~t~~ev~~h~~~~~~~wv~i~g~VYDvt~f~~~HPGG~~~il~~aG~D-t~~f~~~~~~~hs~~a~~~L~~~~IG~ 81 (82)
T 1mj4_A 3 STHIYTKEEVSSHTSPETGIWVTLGSEVFDVTEFVDLHPGGPSKLMLAAGGP-LEPFWALYAVHNQSHVRELLAQYKIGE 81 (82)
T ss_dssp CCCBCCCC-CTTCEETTTEEEEEETTEEEECTTTGGGSTTCHHHHHTTTTSB-SHHHHTTCGGGCSHHHHHHHHTTEEEE
T ss_pred CCCccCHHHHHHhcCCCCCeEEEECCEEEEchHHHHhCCCHhHHHHHHcCCC-hHHHHhhccccCcHHHHHHHHhCccee
Confidence 478999999999999997 999999999999999999999988888899999 678885 479999999999999998
Q ss_pred e
Q 032697 81 I 81 (135)
Q Consensus 81 l 81 (135)
|
T Consensus 82 l 82 (82)
T 1mj4_A 82 L 82 (82)
T ss_dssp C
T ss_pred C
Confidence 5
No 9
>2keo_A Probable E3 ubiquitin-protein ligase HERC2; protein of unknown function, HERC2 cytochrome domain, ligase binding, phosphoprotein; NMR {Homo sapiens}
Probab=99.94 E-value=5.6e-29 Score=172.50 Aligned_cols=81 Identities=26% Similarity=0.459 Sum_probs=76.7
Q ss_pred CCCccCHHHHhcccCCCCeEEEEcCEEeeccccccccCcchhHhhhhcCCCcchhhhhcCCChHHHHhhhhCeEEEecCC
Q 032697 5 DGKVFTLAEVSDHNNMKDCWLIINGKVYDVTKFLEDHPGGDEVLLSATGKDATDDFEDVGHSPSAREMMDQYYVGEIDVS 84 (135)
Q Consensus 5 ~~~~~t~~ev~~h~~~~~~wvvi~g~VYDvT~f~~~HPGG~~~l~~~aG~D~T~~f~~~~Hs~~a~~~l~~~~IG~l~~~ 84 (135)
+.+.||++||++|++.++|||+|+|+|||||+|++.||||..+|+.++|+|+|++|..++||..|+++|++|+||.+..+
T Consensus 22 ~~~~~t~~Ev~~h~~~~d~wvvi~G~VYDVT~fl~~HPGG~~~l~~~aGkDaT~~F~~~~Hs~~a~~~L~~~~IG~l~~~ 101 (112)
T 2keo_A 22 KVTLVRIADLENHNNDGGFWTVIDGKVYDIKDFQTQSLTENSILAQFAGEDPVVALEAALQFEDTRESMHAFCVGQYLEP 101 (112)
T ss_dssp CCCEECHHHHHHHHHHTCCEEEETTEEEEHHHHHHHHTSTTSTTGGGTTSCHHHHHHHHHHSTTGGGTHHHHEEEEECCH
T ss_pred CCCccCHHHHHHhcCCCCEEEEECCEEEECCcchhhCCCchhhhhhhCCccchHHHhHcCCCHHHHHHHHhCceEeeCCc
Confidence 47899999999999999999999999999999999999999999999999999999997799999999999999999854
Q ss_pred C
Q 032697 85 T 85 (135)
Q Consensus 85 ~ 85 (135)
+
T Consensus 102 e 102 (112)
T 2keo_A 102 D 102 (112)
T ss_dssp H
T ss_pred c
Confidence 3
No 10
>1sox_A Sulfite oxidase; oxidoreductase, sulfite oxidation; HET: MTE HEM EPE; 1.90A {Gallus gallus} SCOP: b.1.18.6 d.120.1.1 d.176.1.1 PDB: 3hc2_A* 3hbq_A* 3hbg_A* 3hbp_A* 3r18_A* 3r19_A*
Probab=99.87 E-value=4.5e-22 Score=166.20 Aligned_cols=81 Identities=33% Similarity=0.571 Sum_probs=75.1
Q ss_pred CCCccCHHHHhcccCCCC-eEEEEcCEEeeccccccccCcchhHhhhhcCCCcchhhhh---cCCChHHHHhhhhCeEEE
Q 032697 5 DGKVFTLAEVSDHNNMKD-CWLIINGKVYDVTKFLEDHPGGDEVLLSATGKDATDDFED---VGHSPSAREMMDQYYVGE 80 (135)
Q Consensus 5 ~~~~~t~~ev~~h~~~~~-~wvvi~g~VYDvT~f~~~HPGG~~~l~~~aG~D~T~~f~~---~~Hs~~a~~~l~~~~IG~ 80 (135)
+.+.||++||++|++.++ |||+|+|+|||||+|+++||||.++|+.++|+| |+.|.+ .+||..|+++|++|+||.
T Consensus 3 ~~~~~t~~Ev~~H~~~~d~~Wvii~g~VYDvT~fl~~HPGG~~~il~~aG~D-T~~f~~~~~~~Hs~~a~~~L~~~~IG~ 81 (466)
T 1sox_A 3 SYPEYTREEVGRHRSPEERVWVTHGTDVFDVTDFVELHPGGPDKILLAAGGA-LEPFWALYAVHGEPHVLELLQQYKVGE 81 (466)
T ss_dssp CCCEECHHHHTTCEETTTEEEEEETTEEEECTTTTTTSTTCHHHHGGGTTSB-SHHHHHHSGGGGSHHHHHHHHTTEEEE
T ss_pred CCCeeCHHHHHHhcCCCCceEEEECCEEEechHhHhhCcCCcccchhhcCCc-cccccccccccCCHHHHHHHHhCceEE
Confidence 468999999999999998 999999999999999999999988999999999 999986 579999999999999999
Q ss_pred ecCCCC
Q 032697 81 IDVSTI 86 (135)
Q Consensus 81 l~~~~~ 86 (135)
+..++.
T Consensus 82 l~~~~~ 87 (466)
T 1sox_A 82 LSPDEA 87 (466)
T ss_dssp ECCCCC
T ss_pred eccccc
Confidence 986553
No 11
>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A*
Probab=99.85 E-value=4.7e-22 Score=167.67 Aligned_cols=82 Identities=40% Similarity=0.769 Sum_probs=73.9
Q ss_pred CCCccCHHHHhcccCCCCeEEEEcCEEeeccccccccCcchhHhhhhcCCCcchhhhhcCCChHHH-Hhh-hhCeEEEec
Q 032697 5 DGKVFTLAEVSDHNNMKDCWLIINGKVYDVTKFLEDHPGGDEVLLSATGKDATDDFEDVGHSPSAR-EMM-DQYYVGEID 82 (135)
Q Consensus 5 ~~~~~t~~ev~~h~~~~~~wvvi~g~VYDvT~f~~~HPGG~~~l~~~aG~D~T~~f~~~~Hs~~a~-~~l-~~~~IG~l~ 82 (135)
..+.||++||++|++.++|||+|+|+|||||+|++.||||..+|+.++|+|+|+.|+.+ |+..+. ++| ++|+||.+.
T Consensus 7 ~~~~~t~~ev~~h~~~~~~wv~i~g~VYDvt~f~~~HPGG~~~i~~~aG~DaT~~f~~~-H~~~~~~~~l~~~~~iG~l~ 85 (511)
T 1kbi_A 7 NKQKISPAEVAKHNKPDDCWVVINGYVYDLTRFLPNHPGGQDVIKFNAGKDVTAIFEPL-HAPNVIDKYIAPEKKLGPLQ 85 (511)
T ss_dssp CSCCBCTTHHHHCEETTEEEEEETTEEEECTTTGGGCTTCHHHHHTTTTSBCHHHHGGG-SCTTHHHHHSCGGGEEEEBC
T ss_pred CCCccCHHHHHHhCCCCCEEEEECCEEEECCcchhhCcChHHHHHHHcCcchhhhhhhc-CCHHHHHHhhccccEEEEec
Confidence 36899999999999999999999999999999999999999999999999999999998 666664 555 789999998
Q ss_pred CCCCC
Q 032697 83 VSTIP 87 (135)
Q Consensus 83 ~~~~~ 87 (135)
.++.+
T Consensus 86 ~~~~~ 90 (511)
T 1kbi_A 86 GSMPP 90 (511)
T ss_dssp SCCCT
T ss_pred CCccc
Confidence 76654
No 12
>1j03_A Putative steroid binding protein; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.120.1.2 PDB: 1t0g_A
Probab=99.75 E-value=9.1e-19 Score=119.31 Aligned_cols=60 Identities=28% Similarity=0.406 Sum_probs=54.0
Q ss_pred CCccCHHHHhcccCCC---CeEEEEcCEEeecccccc-ccCcchhHhhhhcCCCcchhhhhcCCCh
Q 032697 6 GKVFTLAEVSDHNNMK---DCWLIINGKVYDVTKFLE-DHPGGDEVLLSATGKDATDDFEDVGHSP 67 (135)
Q Consensus 6 ~~~~t~~ev~~h~~~~---~~wvvi~g~VYDvT~f~~-~HPGG~~~l~~~aG~D~T~~f~~~~Hs~ 67 (135)
++.||++||++|++.+ +|||+|+|+|||||+|.. .||||. +..+||+|+|++|...+|+.
T Consensus 2 ~~~~T~~El~~~ng~~~~~~~~vaI~G~VYDVT~~~~~~hPGG~--~~~~AG~DaT~~f~~~~~~~ 65 (102)
T 1j03_A 2 PMEFTAEQLSQYNGTDESKPIYVAIKGRVFDVTTGKSFYGSGGD--YSMFAGKDASRALGKMSKNE 65 (102)
T ss_dssp CCCCCHHHHTTCBSCSSSCCBEEEETTEEEECGGGHHHHSSSST--TTTTTTSBCHHHHHHTCCCS
T ss_pred CcccCHHHHHHhcCCCCCCCEEEEECCEEEECCCCccccCCCCc--ccccccchHHHHHHHcCCCh
Confidence 3689999999999876 799999999999999976 799998 35899999999999888875
No 13
>4hkr_A Calcium release-activated calcium channel protein; ORAI1, eukaryotic membrane protein, membran protein, ION channel, STIM, membrane; 3.35A {Drosophila melanogaster} PDB: 4hks_A
Probab=37.30 E-value=19 Score=26.70 Aligned_cols=18 Identities=33% Similarity=0.676 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 032697 115 FLVPLAILGLAVGIRIYT 132 (135)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~ 132 (135)
+++|++++.++|++++|-
T Consensus 153 vliPv~i~F~~Fa~hFYr 170 (214)
T 4hkr_A 153 VLIPVMIIFMAFAIHFYR 170 (214)
T ss_dssp HTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 568888888899998884
No 14
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=26.79 E-value=4.8 Score=33.54 Aligned_cols=34 Identities=29% Similarity=0.400 Sum_probs=26.5
Q ss_pred EeeccccccccCcchhHhhhhcCCCcchhhhhcCCC
Q 032697 31 VYDVTKFLEDHPGGDEVLLSATGKDATDDFEDVGHS 66 (135)
Q Consensus 31 VYDvT~f~~~HPGG~~~l~~~aG~D~T~~f~~~~Hs 66 (135)
-+|+.+|+..||.|..++....||+.--.+ ..|.
T Consensus 426 c~Digefvr~~P~gr~i~~~lg~K~~VM~L--m~h~ 459 (480)
T 1ho8_A 426 LNDITHVVELLPESIDVLDKTGGKADIMEL--LNHS 459 (480)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHSHHHHHHHH--TSCS
T ss_pred cccHHHHHHHCcchhHHHHHcCcHHHHHHH--hcCC
Confidence 389999999999999999999887544333 3355
Done!