BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032698
(135 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1TQ1|A Chain A, Solution Structure Of At5g66040, A Putative Protein From
Arabidosis Thaliana
Length = 129
Score = 89.0 bits (219), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 45/89 (50%), Positives = 57/89 (64%), Gaps = 2/89 (2%)
Query: 30 TVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVR 89
+V V A +LL +G+ YLDVRT EEF +GH A N+PYM G KN DFL++V
Sbjct: 19 SVSVTVAHDLLLAGHRYLDVRTPEEFSQGH--ACGAINVPYMNRGASGMSKNTDFLEQVS 76
Query: 90 SLCKEEDRLVVGCQSGARSLHATADLLGA 118
S + D ++VGCQSG RS+ AT DLL A
Sbjct: 77 SHFGQSDNIIVGCQSGGRSIKATTDLLHA 105
>pdb|1YT8|A Chain A, Crystal Structure Of Thiosulfate Sulfurtransferase From
Pseudomonas Aeruginosa
Length = 539
Score = 28.5 bits (62), Expect = 1.0, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 14/63 (22%)
Query: 47 LDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGR-VKNPDFLKKVRSLCKEEDRLVVGCQSG 105
LDVRT EE++ GH+ ++ +TP G+ V+ D + VR RLV+ G
Sbjct: 286 LDVRTPEEYEAGHLPGSR--------STPGGQLVQETDHVASVRGA-----RLVLVDDDG 332
Query: 106 ARS 108
R+
Sbjct: 333 VRA 335
>pdb|2W1V|A Chain A, Crystal Structure Of Mouse Nitrilase-2 At 1.4a
Resolution
pdb|2W1V|B Chain B, Crystal Structure Of Mouse Nitrilase-2 At 1.4a
Resolution
Length = 276
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 50 RTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKV 88
R +E A I ++P FN+P G PD+ +K+
Sbjct: 23 RACSLVREAAKQGANIVSLPECFNSPYGTTYFPDYAEKI 61
>pdb|3R2U|A Chain A, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
pdb|3R2U|B Chain B, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
pdb|3R2U|C Chain C, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
pdb|3R2U|D Chain D, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
Length = 466
Score = 28.1 bits (61), Expect = 1.7, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 14/62 (22%)
Query: 47 LDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSGA 106
LDVR E+ GH+ A + P G++ D + D + V CQSG
Sbjct: 391 LDVRNDNEWNNGHLSQA--------VHVPHGKLLETDL------PFNKNDVIYVHCQSGI 436
Query: 107 RS 108
RS
Sbjct: 437 RS 438
>pdb|2PB0|A Chain A, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
pdb|2PB0|B Chain B, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
pdb|2PB2|A Chain A, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
pdb|2PB2|B Chain B, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
Length = 420
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Query: 76 EGRVK--NPDFLKKVRSLCKEEDRLVV 100
EG V+ P+FLK +R LC E L+V
Sbjct: 213 EGGVQAATPEFLKGLRDLCDEHQALLV 239
>pdb|2PBG|A Chain A, 6-Phospho-Beta-D-Galactosidase Form-B
Length = 468
Score = 27.3 bits (59), Expect = 2.6, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 35 AAKNLLESGYGYLDVRTAE----EFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKK 87
A + +GYG ++ + E F E H + F + F+TPE N DFL +
Sbjct: 76 AWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLHHFDTPEALHSNGDFLNR 132
>pdb|1PBG|A Chain A, The Three-Dimensional Structure Of 6-Phospho-Beta
Galactosidase From Lactococcus Lactis
pdb|1PBG|B Chain B, The Three-Dimensional Structure Of 6-Phospho-Beta
Galactosidase From Lactococcus Lactis
pdb|3PBG|A Chain A, 6-Phospho-Beta-Galactosidase Form-C
pdb|3PBG|B Chain B, 6-Phospho-Beta-Galactosidase Form-C
Length = 468
Score = 27.3 bits (59), Expect = 2.6, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 35 AAKNLLESGYGYLDVRTAE----EFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKK 87
A + +GYG ++ + E F E H + F + F+TPE N DFL +
Sbjct: 76 AWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLHHFDTPEALHSNGDFLNR 132
>pdb|4PBG|A Chain A, 6-Phospho-Beta-Galactosidase Form-Cst
pdb|4PBG|B Chain B, 6-Phospho-Beta-Galactosidase Form-Cst
Length = 468
Score = 27.3 bits (59), Expect = 2.6, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 35 AAKNLLESGYGYLDVRTAE----EFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKK 87
A + +GYG ++ + E F E H + F + F+TPE N DFL +
Sbjct: 76 AWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLHHFDTPEALHSNGDFLNR 132
>pdb|2UV8|A Chain A, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|B Chain B, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|C Chain C, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
Length = 1887
Score = 26.9 bits (58), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 12/20 (60%)
Query: 50 RTAEEFKEGHVDAAKIFNIP 69
TAE+FK H D IF IP
Sbjct: 1139 ETAEQFKHQHGDKVDIFEIP 1158
>pdb|2VKZ|A Chain A, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|B Chain B, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|C Chain C, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|3HMJ|A Chain A, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|B Chain B, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|C Chain C, Saccharomyces Cerevisiae Fas Type I
Length = 1887
Score = 26.9 bits (58), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 12/20 (60%)
Query: 50 RTAEEFKEGHVDAAKIFNIP 69
TAE+FK H D IF IP
Sbjct: 1139 ETAEQFKHQHGDKVDIFEIP 1158
>pdb|2PFF|A Chain A, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|D Chain D, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|G Chain G, Structural Insights Of Yeast Fatty Acid Synthase
Length = 1688
Score = 26.9 bits (58), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 12/20 (60%)
Query: 50 RTAEEFKEGHVDAAKIFNIP 69
TAE+FK H D IF IP
Sbjct: 940 ETAEQFKHQHGDKVDIFEIP 959
>pdb|3NX3|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase
(Argd) From Campylobacter Jejuni
pdb|3NX3|B Chain B, Crystal Structure Of Acetylornithine Aminotransferase
(Argd) From Campylobacter Jejuni
Length = 395
Score = 26.6 bits (57), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 81 NPDFLKKVRSLCKEEDRLVV 100
N DF K +R LC E+D L++
Sbjct: 198 NKDFYKALRKLCDEKDILLI 217
>pdb|2EH6|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From
Aquifex Aeolicus Vf5
pdb|2EH6|B Chain B, Crystal Structure Of Acetylornithine Aminotransferase From
Aquifex Aeolicus Vf5
Length = 375
Score = 26.6 bits (57), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 9/18 (50%), Positives = 15/18 (83%)
Query: 83 DFLKKVRSLCKEEDRLVV 100
DFL K++ +CKE+D L++
Sbjct: 193 DFLSKLQEICKEKDVLLI 210
>pdb|2UV9|A Chain A, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|B Chain B, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|C Chain C, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|D Chain D, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|E Chain E, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|F Chain F, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVB|A Chain A, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|B Chain B, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|C Chain C, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|D Chain D, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|E Chain E, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|F Chain F, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
Length = 1878
Score = 26.6 bits (57), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 11/18 (61%), Positives = 12/18 (66%)
Query: 52 AEEFKEGHVDAAKIFNIP 69
AEEFK H D +IF IP
Sbjct: 1116 AEEFKREHGDKVEIFEIP 1133
>pdb|1SZN|A Chain A, The Structure Of Alpha-Galactosidase
pdb|1T0O|A Chain A, The Structure Of Alpha-Galactosidase From Trichoderma
Reesei Complexed With Beta-D-Galactose
Length = 417
Score = 26.2 bits (56), Expect = 5.3, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
Query: 24 SGAEVITVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDA 62
S AE+I + LL++GY Y+++ K+G VD
Sbjct: 33 SAAELIV-----SSGLLDAGYNYVNIDDCWSMKDGRVDG 66
>pdb|2JUJ|A Chain A, Solution Structure Of The Uba Domain From C-Cbl
Length = 56
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 37 KNLLESGYGYLDVRTAEEFKEGHVDAAK 64
+NL+ GY Y D++ A + +++ AK
Sbjct: 12 ENLMSQGYSYQDIQKALVIAQNNIEMAK 39
>pdb|1PZ2|A Chain A, Crystal Structure Of A Transient Covalent Reaction
Intermediate Of A Family 51 Alpha-L-Arabinofuranosidase
pdb|1PZ2|B Chain B, Crystal Structure Of A Transient Covalent Reaction
Intermediate Of A Family 51 Alpha-L-Arabinofuranosidase
pdb|1QW8|A Chain A, Crystal Structure Of A Family 51 Alpha-L-
Arabinofuranosidase In Complex With Ara-Alpha(1,3)-Xyl
pdb|1QW8|B Chain B, Crystal Structure Of A Family 51 Alpha-L-
Arabinofuranosidase In Complex With Ara-Alpha(1,3)-Xyl
pdb|1QW9|A Chain A, Crystal Structure Of A Family 51 Alpha-L-
Arabinofuranosidase In Complex With 4-Nitrophenyl-Ara
pdb|1QW9|B Chain B, Crystal Structure Of A Family 51 Alpha-L-
Arabinofuranosidase In Complex With 4-Nitrophenyl-Ara
Length = 502
Score = 25.8 bits (55), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 5/32 (15%)
Query: 33 VRAAKNLLE-----SGYGYLDVRTAEEFKEGH 59
+ AA+NL+E SG Y D+R A +KE H
Sbjct: 134 IDAARNLVEYCNHPSGSYYSDLRIAHGYKEPH 165
>pdb|1PZ3|A Chain A, Crystal Structure Of A Family 51 (gh51)
Alpha-l-arabinofuranosidase From Geobacillus
Stearothermophilus T6
pdb|1PZ3|B Chain B, Crystal Structure Of A Family 51 (gh51)
Alpha-l-arabinofuranosidase From Geobacillus
Stearothermophilus T6
Length = 502
Score = 25.8 bits (55), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 5/32 (15%)
Query: 33 VRAAKNLLE-----SGYGYLDVRTAEEFKEGH 59
+ AA+NL+E SG Y D+R A +KE H
Sbjct: 134 IDAARNLVEYCNHPSGSYYSDLRIAHGYKEPH 165
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,589,803
Number of Sequences: 62578
Number of extensions: 126763
Number of successful extensions: 397
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 385
Number of HSP's gapped (non-prelim): 24
length of query: 135
length of database: 14,973,337
effective HSP length: 88
effective length of query: 47
effective length of database: 9,466,473
effective search space: 444924231
effective search space used: 444924231
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)