Query 032698
Match_columns 135
No_of_seqs 113 out of 1670
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 04:48:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032698.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032698hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1530 Rhodanese-related sulf 99.9 2.6E-21 5.6E-26 129.3 9.1 110 21-133 15-126 (136)
2 PLN02160 thiosulfate sulfurtra 99.8 1.4E-20 3E-25 129.0 10.3 109 24-133 10-118 (136)
3 cd01533 4RHOD_Repeat_2 Member 99.8 1.4E-20 3E-25 124.0 9.4 93 26-132 7-103 (109)
4 cd01534 4RHOD_Repeat_3 Member 99.8 1.2E-20 2.6E-25 121.4 8.9 88 31-133 1-92 (95)
5 cd01518 RHOD_YceA Member of th 99.8 6.2E-21 1.4E-25 124.0 7.6 93 30-133 3-98 (101)
6 cd01519 RHOD_HSP67B2 Member of 99.8 1E-20 2.3E-25 123.5 7.4 99 32-133 2-103 (106)
7 cd01523 RHOD_Lact_B Member of 99.8 5.7E-20 1.2E-24 119.1 8.6 91 31-133 1-97 (100)
8 cd01527 RHOD_YgaP Member of th 99.8 4E-20 8.6E-25 119.6 7.5 90 29-133 2-91 (99)
9 cd01524 RHOD_Pyr_redox Member 99.8 1.5E-19 3.2E-24 115.2 8.9 87 31-133 1-87 (90)
10 cd01528 RHOD_2 Member of the R 99.8 1.8E-19 3.9E-24 117.1 8.9 90 30-133 1-95 (101)
11 PRK00162 glpE thiosulfate sulf 99.8 2.6E-19 5.7E-24 117.7 9.4 92 27-133 3-95 (108)
12 cd01530 Cdc25 Cdc25 phosphatas 99.8 4.2E-19 9E-24 119.4 9.6 93 29-133 2-118 (121)
13 cd01520 RHOD_YbbB Member of th 99.8 2.9E-19 6.3E-24 121.0 8.3 99 31-133 1-123 (128)
14 cd01444 GlpE_ST GlpE sulfurtra 99.8 5.9E-19 1.3E-23 113.1 9.3 89 30-133 1-93 (96)
15 cd01522 RHOD_1 Member of the R 99.8 1.8E-18 4E-23 115.5 10.3 98 31-133 1-101 (117)
16 cd01526 RHOD_ThiF Member of th 99.8 8.6E-19 1.9E-23 117.7 8.2 100 27-133 6-110 (122)
17 cd01525 RHOD_Kc Member of the 99.8 7.7E-19 1.7E-23 114.5 6.8 97 31-133 1-102 (105)
18 cd01448 TST_Repeat_1 Thiosulfa 99.8 3.7E-18 8.1E-23 114.2 8.8 100 31-133 2-117 (122)
19 cd01449 TST_Repeat_2 Thiosulfa 99.8 3E-18 6.4E-23 113.9 8.2 100 31-133 1-115 (118)
20 cd01521 RHOD_PspE2 Member of t 99.8 4.1E-18 8.9E-23 112.4 8.7 91 28-133 7-102 (110)
21 cd01447 Polysulfide_ST Polysul 99.8 3.2E-18 6.9E-23 111.0 7.3 95 31-133 1-98 (103)
22 TIGR03865 PQQ_CXXCW PQQ-depend 99.8 1E-17 2.2E-22 117.9 10.0 107 24-133 31-154 (162)
23 PRK01415 hypothetical protein; 99.7 7.4E-18 1.6E-22 125.4 8.3 93 28-131 111-206 (247)
24 cd01529 4RHOD_Repeats Member o 99.7 6.7E-18 1.5E-22 108.7 7.0 82 43-133 12-93 (96)
25 cd01443 Cdc25_Acr2p Cdc25 enzy 99.7 2.1E-17 4.6E-22 109.5 8.4 95 29-133 2-110 (113)
26 cd01445 TST_Repeats Thiosulfat 99.7 2.6E-17 5.7E-22 113.0 8.7 101 31-133 1-135 (138)
27 PRK10287 thiosulfate:cyanide s 99.7 3.5E-17 7.6E-22 107.3 7.3 76 43-133 20-96 (104)
28 PRK00142 putative rhodanese-re 99.7 3.9E-17 8.4E-22 125.7 8.4 95 28-133 111-208 (314)
29 TIGR02981 phageshock_pspE phag 99.7 3.9E-17 8.5E-22 106.6 7.1 76 43-133 18-94 (101)
30 PF00581 Rhodanese: Rhodanese- 99.7 5.2E-17 1.1E-21 106.2 7.8 99 32-133 1-109 (113)
31 PRK08762 molybdopterin biosynt 99.7 6.2E-17 1.3E-21 127.3 9.6 92 28-133 2-94 (376)
32 cd01531 Acr2p Eukaryotic arsen 99.7 4.4E-17 9.6E-22 107.9 7.3 90 29-132 2-107 (113)
33 PRK11493 sseA 3-mercaptopyruva 99.7 8.6E-17 1.9E-21 122.0 9.2 104 28-133 4-125 (281)
34 PRK05320 rhodanese superfamily 99.7 1.2E-16 2.7E-21 119.8 9.4 95 27-132 108-211 (257)
35 cd01532 4RHOD_Repeat_1 Member 99.7 9.9E-17 2.1E-21 102.7 7.6 80 40-133 6-89 (92)
36 cd00158 RHOD Rhodanese Homolog 99.7 1.4E-16 3E-21 100.0 7.9 83 37-133 3-87 (89)
37 smart00450 RHOD Rhodanese Homo 99.7 1.8E-16 4E-21 100.9 8.0 88 43-133 4-93 (100)
38 cd01535 4RHOD_Repeat_4 Member 99.7 3.1E-16 6.6E-21 108.5 7.8 83 36-133 2-86 (145)
39 PLN02723 3-mercaptopyruvate su 99.7 5E-16 1.1E-20 119.9 9.3 104 28-133 21-141 (320)
40 PRK09629 bifunctional thiosulf 99.7 4.4E-16 9.5E-21 128.8 9.4 103 29-133 9-119 (610)
41 PRK07878 molybdopterin biosynt 99.6 5.7E-16 1.2E-20 122.5 8.6 93 26-133 284-380 (392)
42 PLN02723 3-mercaptopyruvate su 99.6 6.8E-16 1.5E-20 119.1 8.2 99 31-132 192-305 (320)
43 COG2897 SseA Rhodanese-related 99.6 1.5E-15 3.3E-20 115.0 9.5 101 29-132 156-270 (285)
44 PRK07411 hypothetical protein; 99.6 1.4E-15 3.1E-20 120.1 8.3 97 26-133 279-378 (390)
45 COG0607 PspE Rhodanese-related 99.6 3E-15 6.6E-20 97.8 7.4 77 43-133 20-98 (110)
46 PRK11493 sseA 3-mercaptopyruva 99.6 3.3E-15 7.1E-20 113.4 8.2 99 31-132 155-267 (281)
47 PRK11784 tRNA 2-selenouridine 99.6 3.5E-15 7.6E-20 116.1 8.5 99 31-133 3-125 (345)
48 PRK09629 bifunctional thiosulf 99.6 3.3E-15 7.1E-20 123.6 8.3 101 30-133 148-260 (610)
49 PRK05597 molybdopterin biosynt 99.6 3.5E-15 7.5E-20 116.7 7.4 93 26-133 258-351 (355)
50 PRK05600 thiamine biosynthesis 99.6 4.9E-15 1.1E-19 116.4 8.1 90 29-133 271-370 (370)
51 cd01446 DSP_MapKP N-terminal r 99.5 2.8E-14 6.1E-19 96.8 7.6 100 30-133 1-123 (132)
52 TIGR03167 tRNA_sel_U_synt tRNA 99.5 3.3E-14 7.1E-19 109.3 6.9 86 44-133 3-111 (311)
53 PRK01269 tRNA s(4)U8 sulfurtra 99.5 5.2E-14 1.1E-18 113.9 8.1 82 33-129 397-482 (482)
54 COG1054 Predicted sulfurtransf 99.4 1.2E-13 2.5E-18 104.2 5.1 92 28-130 112-206 (308)
55 COG2897 SseA Rhodanese-related 99.4 1E-12 2.2E-17 99.7 10.0 104 27-132 9-127 (285)
56 KOG3772 M-phase inducer phosph 99.0 8.4E-10 1.8E-14 84.5 6.7 96 24-131 151-270 (325)
57 KOG2017 Molybdopterin synthase 98.9 9.7E-10 2.1E-14 84.8 4.3 96 28-132 316-414 (427)
58 KOG1529 Mercaptopyruvate sulfu 98.7 7.1E-08 1.5E-12 72.7 8.8 101 29-131 5-124 (286)
59 KOG1529 Mercaptopyruvate sulfu 98.5 4.4E-07 9.6E-12 68.5 6.3 85 43-131 172-270 (286)
60 TIGR01244 conserved hypothetic 98.4 2.6E-06 5.7E-11 58.1 9.0 86 28-118 12-109 (135)
61 COG5105 MIH1 Mitotic inducer, 98.3 1.3E-06 2.8E-11 67.1 6.1 97 24-132 237-353 (427)
62 PF04273 DUF442: Putative phos 98.1 1.4E-05 3E-10 52.8 7.1 82 28-114 12-105 (110)
63 COG2603 Predicted ATPase [Gene 97.8 2.1E-05 4.4E-10 59.9 3.4 88 33-122 5-115 (334)
64 PF13350 Y_phosphatase3: Tyros 97.1 0.0036 7.8E-08 43.7 7.2 97 26-122 25-152 (164)
65 PLN02727 NAD kinase 96.9 0.0034 7.4E-08 54.6 7.3 88 28-120 266-368 (986)
66 cd00127 DSPc Dual specificity 96.7 0.006 1.3E-07 40.9 5.7 81 41-122 25-110 (139)
67 PRK00142 putative rhodanese-re 96.2 0.0014 2.9E-08 50.9 0.1 61 29-102 14-76 (314)
68 COG3453 Uncharacterized protei 96.0 0.047 1E-06 36.6 6.8 87 28-121 13-113 (130)
69 TIGR03167 tRNA_sel_U_synt tRNA 95.4 0.057 1.2E-06 41.9 6.1 69 28-107 135-208 (311)
70 smart00195 DSPc Dual specifici 95.2 0.092 2E-06 35.2 6.2 84 36-122 19-107 (138)
71 KOG1093 Predicted protein kina 93.9 0.023 4.9E-07 47.3 0.9 42 26-71 619-660 (725)
72 PTZ00242 protein tyrosine phos 92.2 1.3 2.8E-05 31.1 7.7 84 36-122 33-127 (166)
73 PRK12361 hypothetical protein; 91.6 0.59 1.3E-05 38.8 6.1 84 32-118 109-200 (547)
74 PF00782 DSPc: Dual specificit 90.8 0.41 8.8E-06 31.7 3.7 80 43-122 18-102 (133)
75 PTZ00393 protein tyrosine phos 82.3 14 0.0003 27.8 8.0 30 92-122 167-198 (241)
76 COG2085 Predicted dinucleotide 79.6 7.7 0.00017 28.5 5.8 28 95-122 147-174 (211)
77 KOG3636 Uncharacterized conser 79.0 0.95 2.1E-05 37.1 1.0 25 44-70 327-351 (669)
78 COG2453 CDC14 Predicted protei 78.6 3.7 7.9E-05 29.1 3.9 39 84-122 94-134 (180)
79 PRK11784 tRNA 2-selenouridine 78.0 11 0.00024 29.7 6.7 63 31-104 152-218 (345)
80 PF05706 CDKN3: Cyclin-depende 77.6 7.9 0.00017 27.5 5.2 27 92-118 130-158 (168)
81 PF13344 Hydrolase_6: Haloacid 77.4 7.3 0.00016 24.9 4.7 37 83-123 21-58 (101)
82 cd03423 SirA SirA (also known 73.0 12 0.00026 22.1 4.5 41 83-125 15-55 (69)
83 COG0647 NagD Predicted sugar p 72.2 5.7 0.00012 30.3 3.6 30 93-122 38-68 (269)
84 PRK11018 hypothetical protein; 70.7 21 0.00046 21.7 5.8 41 83-125 24-64 (78)
85 cd03422 YedF YedF is a bacteri 70.0 20 0.00043 21.1 5.1 41 83-125 15-55 (69)
86 TIGR00853 pts-lac PTS system, 69.4 7.4 0.00016 24.7 3.2 29 95-123 3-34 (95)
87 COG4992 ArgD Ornithine/acetylo 66.2 11 0.00024 30.4 4.2 38 83-121 88-125 (404)
88 COG1891 Uncharacterized protei 66.1 48 0.001 24.0 7.9 33 31-70 8-40 (235)
89 cd05565 PTS_IIB_lactose PTS_II 66.0 8.8 0.00019 24.7 3.1 26 97-122 2-30 (99)
90 COG0425 SirA Predicted redox p 65.5 29 0.00062 21.2 5.7 41 83-124 21-61 (78)
91 PF03853 YjeF_N: YjeF-related 65.5 10 0.00022 26.5 3.6 40 85-125 13-57 (169)
92 PRK09590 celB cellobiose phosp 65.0 8.8 0.00019 24.9 2.9 29 96-124 2-33 (104)
93 PF07172 GRP: Glycine rich pro 62.7 8.5 0.00018 24.6 2.5 22 1-23 1-22 (95)
94 PRK10499 PTS system N,N'-diace 62.4 13 0.00028 24.1 3.4 21 96-116 4-24 (106)
95 cd05564 PTS_IIB_chitobiose_lic 62.1 11 0.00024 23.8 3.0 21 97-117 1-21 (96)
96 PF01206 TusA: Sulfurtransfera 61.5 25 0.00054 20.4 4.3 39 83-123 16-54 (70)
97 PF03162 Y_phosphatase2: Tyros 60.8 14 0.0003 25.9 3.5 82 39-122 27-119 (164)
98 KOG1712 Adenine phosphoribosyl 60.4 12 0.00026 26.6 3.0 30 92-121 119-151 (183)
99 PRK07688 thiamine/molybdopteri 60.2 6.6 0.00014 30.8 2.0 37 26-63 274-317 (339)
100 PF02302 PTS_IIB: PTS system, 58.9 13 0.00028 22.6 2.9 16 97-112 1-16 (90)
101 cd03420 SirA_RHOD_Pry_redox Si 58.6 35 0.00076 20.0 4.6 41 83-125 15-55 (69)
102 PF06897 DUF1269: Protein of u 57.8 27 0.00059 22.6 4.3 50 83-132 43-92 (102)
103 COG0062 Uncharacterized conser 57.6 42 0.00091 24.5 5.7 35 95-130 49-86 (203)
104 cd05567 PTS_IIB_mannitol PTS_I 55.6 19 0.00041 22.1 3.2 16 96-111 1-16 (87)
105 PLN02645 phosphoglycolate phos 55.5 62 0.0013 24.8 6.6 73 28-122 13-87 (311)
106 PLN03049 pyridoxine (pyridoxam 55.4 31 0.00067 28.4 5.1 34 95-129 59-95 (462)
107 COG1440 CelA Phosphotransferas 54.8 18 0.0004 23.5 3.0 24 96-119 2-25 (102)
108 KOG2882 p-Nitrophenyl phosphat 54.1 70 0.0015 24.9 6.6 67 34-122 13-81 (306)
109 PRK10565 putative carbohydrate 52.1 40 0.00086 28.0 5.4 34 93-127 58-94 (508)
110 TIGR00197 yjeF_nterm yjeF N-te 51.2 70 0.0015 23.1 6.0 31 92-123 42-75 (205)
111 KOG1717 Dual specificity phosp 50.9 7.6 0.00016 29.9 0.9 37 30-70 5-42 (343)
112 PF14566 PTPlike_phytase: Inos 50.4 9.3 0.0002 26.2 1.2 42 60-106 90-135 (149)
113 cd00133 PTS_IIB PTS_IIB: subun 50.1 22 0.00048 20.7 2.8 22 97-118 1-23 (84)
114 TIGR02482 PFKA_ATP 6-phosphofr 49.1 84 0.0018 24.3 6.4 77 44-129 162-249 (301)
115 cd00291 SirA_YedF_YeeD SirA, Y 48.4 51 0.0011 18.8 5.0 41 83-125 15-55 (69)
116 PLN02918 pyridoxine (pyridoxam 46.0 57 0.0012 27.6 5.3 32 96-128 136-170 (544)
117 TIGR03042 PS_II_psbQ_bact phot 44.0 53 0.0012 22.7 4.2 37 5-41 2-40 (142)
118 PLN03050 pyridoxine (pyridoxam 42.8 38 0.00082 25.4 3.6 31 96-127 61-94 (246)
119 cd05566 PTS_IIB_galactitol PTS 42.7 39 0.00085 20.5 3.2 20 97-116 2-22 (89)
120 PF04343 DUF488: Protein of un 42.0 25 0.00054 23.0 2.3 20 32-51 1-22 (122)
121 cd03421 SirA_like_N SirA_like_ 42.0 68 0.0015 18.4 4.4 39 83-124 15-53 (67)
122 cd00763 Bacterial_PFK Phosphof 39.5 1.3E+02 0.0028 23.4 6.2 80 44-129 162-247 (317)
123 TIGR01459 HAD-SF-IIA-hyp4 HAD- 39.1 1E+02 0.0022 22.5 5.4 28 94-122 39-66 (242)
124 PRK15416 lipopolysaccharide co 39.1 1.5E+02 0.0033 21.6 8.3 84 24-117 35-121 (201)
125 PF09992 DUF2233: Predicted pe 36.3 65 0.0014 22.1 3.8 42 92-134 97-143 (170)
126 cd05563 PTS_IIB_ascorbate PTS_ 35.7 57 0.0012 19.6 3.1 16 97-112 1-16 (86)
127 PRK05370 argininosuccinate syn 35.6 71 0.0015 26.3 4.3 30 93-123 9-38 (447)
128 TIGR03372 putres_am_tran putre 35.3 1.3E+02 0.0027 24.6 5.7 36 83-118 121-156 (442)
129 KOG4053 Ataxin-1, involved in 34.9 24 0.00053 25.7 1.4 67 25-103 49-117 (224)
130 PF07879 PHB_acc_N: PHB/PHA ac 34.5 54 0.0012 19.4 2.6 26 28-53 17-44 (64)
131 cd05568 PTS_IIB_bgl_like PTS_I 34.2 58 0.0013 19.3 2.9 26 97-122 2-28 (85)
132 COG1204 Superfamily II helicas 32.8 1.8E+02 0.0039 25.7 6.6 85 31-117 191-275 (766)
133 TIGR00824 EIIA-man PTS system, 32.7 1.4E+02 0.0031 19.4 6.0 31 83-113 43-77 (116)
134 PRK10310 PTS system galactitol 32.6 64 0.0014 20.2 3.0 15 97-111 4-18 (94)
135 KOG3040 Predicted sugar phosph 32.2 1E+02 0.0022 23.1 4.2 26 98-124 42-68 (262)
136 TIGR00201 comF comF family pro 31.2 71 0.0015 22.6 3.4 33 94-127 151-186 (190)
137 COG0074 SucD Succinyl-CoA synt 31.1 98 0.0021 24.0 4.2 40 92-132 5-44 (293)
138 COG4803 Predicted membrane pro 30.9 96 0.0021 21.8 3.7 52 82-133 103-154 (170)
139 PF00733 Asn_synthase: Asparag 30.9 1.7E+02 0.0037 20.8 5.4 39 84-122 6-44 (255)
140 PF03610 EIIA-man: PTS system 30.5 95 0.0021 19.9 3.6 24 92-115 54-79 (116)
141 PF00156 Pribosyltran: Phospho 29.3 85 0.0018 19.9 3.3 32 93-125 86-120 (125)
142 PRK05298 excinuclease ABC subu 28.9 95 0.0021 26.7 4.2 42 83-125 434-475 (652)
143 cd01991 Asn_Synthase_B_C The C 28.8 1.9E+02 0.004 21.2 5.4 36 85-120 5-40 (269)
144 KOG1404 Alanine-glyoxylate ami 28.6 1.2E+02 0.0026 24.8 4.4 36 83-118 96-131 (442)
145 PRK13802 bifunctional indole-3 28.6 4.1E+02 0.0088 23.3 8.0 88 31-123 144-236 (695)
146 PRK09219 xanthine phosphoribos 28.5 79 0.0017 22.6 3.2 29 92-120 114-145 (189)
147 PF03720 UDPG_MGDP_dh_C: UDP-g 28.4 41 0.0009 21.4 1.6 28 24-51 75-102 (106)
148 PRK00919 GMP synthase subunit 28.3 1.7E+02 0.0036 22.8 5.1 28 95-122 21-48 (307)
149 smart00012 PTPc_DSPc Protein t 26.5 1E+02 0.0022 18.5 3.2 18 95-112 39-57 (105)
150 smart00404 PTPc_motif Protein 26.5 1E+02 0.0022 18.5 3.2 18 95-112 39-57 (105)
151 COG0608 RecJ Single-stranded D 26.5 1.9E+02 0.0041 23.8 5.5 41 92-132 33-76 (491)
152 TIGR00631 uvrb excinuclease AB 26.3 1.2E+02 0.0027 26.1 4.4 42 83-125 430-471 (655)
153 TIGR02189 GlrX-like_plant Glut 26.2 1.3E+02 0.0028 18.9 3.6 28 94-121 6-33 (99)
154 PF02629 CoA_binding: CoA bind 26.0 1.5E+02 0.0033 18.3 3.9 38 93-131 1-40 (96)
155 COG4566 TtrR Response regulato 25.5 2.7E+02 0.006 20.4 6.0 53 28-106 32-87 (202)
156 TIGR01744 XPRTase xanthine pho 25.5 95 0.0021 22.3 3.2 29 92-120 114-145 (191)
157 TIGR00689 rpiB_lacA_lacB sugar 25.3 2.3E+02 0.005 19.5 6.1 57 35-113 15-74 (144)
158 PRK12615 galactose-6-phosphate 25.2 2.6E+02 0.0056 19.9 6.4 57 35-113 17-76 (171)
159 PLN02583 cinnamoyl-CoA reducta 25.2 1.1E+02 0.0025 22.9 3.8 31 94-125 5-35 (297)
160 TIGR01118 lacA galactose-6-pho 25.1 2.3E+02 0.0051 19.4 5.9 55 35-113 17-74 (141)
161 TIGR02190 GlrX-dom Glutaredoxi 25.1 1.6E+02 0.0034 17.4 4.2 30 93-122 5-34 (79)
162 PRK12613 galactose-6-phosphate 25.0 2.3E+02 0.0051 19.4 5.7 54 35-113 17-73 (141)
163 TIGR01120 rpiB ribose 5-phosph 24.9 2.4E+02 0.0051 19.4 6.3 57 35-113 16-75 (143)
164 PRK01565 thiamine biosynthesis 24.9 1E+02 0.0022 24.7 3.5 30 93-123 174-203 (394)
165 PRK12828 short chain dehydroge 24.8 1.3E+02 0.0028 21.1 3.8 27 95-122 7-33 (239)
166 PRK07904 short chain dehydroge 24.7 1.2E+02 0.0027 22.0 3.8 23 96-118 34-57 (253)
167 PF02502 LacAB_rpiB: Ribose/Ga 24.7 2.3E+02 0.0051 19.3 4.9 57 35-113 16-75 (140)
168 cd00079 HELICc Helicase superf 24.6 1.8E+02 0.004 18.0 5.4 35 87-122 20-54 (131)
169 PF02863 Arg_repressor_C: Argi 24.4 1.1E+02 0.0023 18.1 2.8 25 93-117 45-69 (70)
170 COG2519 GCD14 tRNA(1-methylade 24.3 1.4E+02 0.003 22.8 3.9 39 83-122 176-214 (256)
171 cd01986 Alpha_ANH_like Adenine 23.8 1.6E+02 0.0034 18.3 3.7 10 97-106 25-34 (103)
172 PRK03202 6-phosphofructokinase 23.6 3.6E+02 0.0078 21.1 6.6 77 44-129 163-248 (320)
173 cd03029 GRX_hybridPRX5 Glutare 23.6 1.6E+02 0.0034 16.8 3.5 26 97-122 2-27 (72)
174 KOG1969 DNA replication checkp 23.5 1.1E+02 0.0025 27.1 3.7 32 93-124 323-355 (877)
175 TIGR00884 guaA_Cterm GMP synth 23.4 2.2E+02 0.0048 22.1 5.0 27 96-122 17-43 (311)
176 PRK13810 orotate phosphoribosy 23.4 1.1E+02 0.0024 21.8 3.2 30 92-122 119-151 (187)
177 PF00218 IGPS: Indole-3-glycer 23.3 1.4E+02 0.003 22.6 3.8 88 31-123 142-234 (254)
178 PRK07349 amidophosphoribosyltr 23.1 1.4E+02 0.003 25.0 4.1 33 94-126 376-411 (500)
179 PRK13809 orotate phosphoribosy 23.1 1.1E+02 0.0024 22.2 3.2 28 93-120 116-146 (206)
180 PF07755 DUF1611: Protein of u 22.9 2.8E+02 0.0061 21.6 5.5 22 31-52 74-96 (301)
181 TIGR01848 PHA_reg_PhaR polyhyd 22.7 1.2E+02 0.0025 20.0 2.8 29 27-55 16-46 (107)
182 PRK12898 secA preprotein trans 22.7 3.2E+02 0.007 23.8 6.2 80 33-124 422-501 (656)
183 TIGR00268 conserved hypothetic 22.7 1.6E+02 0.0034 21.9 4.0 29 93-122 10-38 (252)
184 COG0541 Ffh Signal recognition 22.5 2.7E+02 0.006 23.0 5.5 40 83-122 199-242 (451)
185 PLN02293 adenine phosphoribosy 22.4 1.2E+02 0.0025 21.7 3.1 28 93-120 123-153 (187)
186 PRK05571 ribose-5-phosphate is 22.3 2.7E+02 0.0059 19.2 6.2 58 35-113 17-77 (148)
187 PRK08622 galactose-6-phosphate 22.3 3E+02 0.0065 19.6 6.3 58 34-113 16-76 (171)
188 PRK12829 short chain dehydroge 21.8 1.6E+02 0.0034 21.2 3.8 29 94-123 10-38 (264)
189 TIGR01019 sucCoAalpha succinyl 21.8 2.1E+02 0.0045 22.0 4.5 39 92-131 3-41 (286)
190 PRK14665 mnmA tRNA-specific 2- 21.7 1.1E+02 0.0024 24.3 3.2 27 93-119 3-29 (360)
191 PF01624 MutS_I: MutS domain I 21.6 99 0.0021 19.8 2.5 43 83-130 65-107 (113)
192 PRK08384 thiamine biosynthesis 21.5 1.2E+02 0.0026 24.3 3.3 25 98-123 183-207 (381)
193 PF01488 Shikimate_DH: Shikima 21.5 1.6E+02 0.0035 19.4 3.6 35 94-130 11-45 (135)
194 cd06269 PBP1_glutamate_recepto 21.3 2.6E+02 0.0056 20.0 4.9 49 83-131 183-232 (298)
195 PRK13812 orotate phosphoribosy 21.2 1.3E+02 0.0028 21.3 3.1 27 93-119 105-134 (176)
196 TIGR00342 thiazole biosynthesi 21.2 1.4E+02 0.0029 23.8 3.6 29 94-123 171-199 (371)
197 TIGR01090 apt adenine phosphor 21.2 1.2E+02 0.0025 21.1 2.9 31 93-124 107-140 (169)
198 PRK06781 amidophosphoribosyltr 21.0 1.7E+02 0.0037 24.2 4.1 31 94-125 347-380 (471)
199 PRK13811 orotate phosphoribosy 20.9 1.3E+02 0.0027 21.1 3.0 26 94-119 103-131 (170)
200 PRK14071 6-phosphofructokinase 20.8 4.3E+02 0.0093 21.0 6.3 21 109-129 263-283 (360)
201 PTZ00110 helicase; Provisional 20.8 2.6E+02 0.0057 23.4 5.3 32 93-125 375-406 (545)
202 KOG1416 tRNA(1-methyladenosine 20.7 1.2E+02 0.0026 25.1 3.1 38 93-131 378-415 (475)
203 PRK10696 tRNA 2-thiocytidine b 20.6 2.2E+02 0.0049 21.1 4.5 26 92-117 26-51 (258)
204 COG2945 Predicted hydrolase of 20.6 2E+02 0.0043 21.2 3.9 36 94-129 26-70 (210)
205 PLN02486 aminoacyl-tRNA ligase 20.6 2.3E+02 0.0049 22.8 4.7 46 83-129 60-115 (383)
206 PRK04914 ATP-dependent helicas 20.5 2E+02 0.0043 26.2 4.7 36 94-130 492-527 (956)
207 PF14532 Sigma54_activ_2: Sigm 20.5 1.7E+02 0.0037 19.2 3.5 39 83-121 9-47 (138)
208 COG0796 MurI Glutamate racemas 20.4 2.9E+02 0.0062 21.2 5.0 37 95-133 68-104 (269)
209 PF13399 LytR_C: LytR cell env 20.4 2.1E+02 0.0045 17.3 3.7 15 108-123 18-32 (90)
210 COG2204 AtoC Response regulato 20.4 5.1E+02 0.011 21.6 7.0 37 83-122 65-101 (464)
211 PRK09273 hypothetical protein; 20.2 3.7E+02 0.008 19.9 5.7 63 31-113 17-82 (211)
212 PRK07322 adenine phosphoribosy 20.2 1.7E+02 0.0036 20.6 3.5 28 94-121 119-149 (178)
213 COG1560 HtrB Lauroyl/myristoyl 20.1 2.4E+02 0.0052 22.0 4.6 38 88-125 115-153 (308)
214 TIGR03527 selenium_YedF seleni 20.1 2.8E+02 0.006 20.0 4.7 41 83-125 14-54 (194)
215 PF10678 DUF2492: Protein of u 20.1 2.3E+02 0.005 17.5 4.6 42 81-122 22-63 (78)
No 1
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.86 E-value=2.6e-21 Score=129.29 Aligned_cols=110 Identities=39% Similarity=0.593 Sum_probs=97.6
Q ss_pred hhhcCCCcceeCHHHHHHHhhCC-CeEEecCChHHHhcCCCCCCceeCeeccccCCCCCCCChHHHHHHHhh-ccCCCcE
Q 032698 21 CRSSGAEVITVDVRAAKNLLESG-YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL-CKEEDRL 98 (135)
Q Consensus 21 ~~~~~~~~~~is~~el~~~l~~~-~~iIDvR~~~e~~~ghIpgA~~~nip~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v 98 (135)
+..+......++.++++.+++.+ .++||||+|+||.+||+|.+ +|||+........+.+++|.+.++.. .+.++.|
T Consensus 15 ~~~~~~~~~sv~~~qvk~L~~~~~~~llDVRepeEfk~gh~~~s--iNiPy~~~~~~~~l~~~eF~kqvg~~kp~~d~ei 92 (136)
T KOG1530|consen 15 FSKKASNPQSVSVEQVKNLLQHPDVVLLDVREPEEFKQGHIPAS--INIPYMSRPGAGALKNPEFLKQVGSSKPPHDKEI 92 (136)
T ss_pred hhhccCCcEEEEHHHHHHHhcCCCEEEEeecCHHHhhccCCcce--EeccccccccccccCCHHHHHHhcccCCCCCCcE
Confidence 34455667889999999999986 89999999999999999999 99999877777888899999999887 5667799
Q ss_pred EEEcCCCcchHHHHHHHHHhCCCceEeecCCCccc
Q 032698 99 VVGCQSGARSLHATADLLGAVSFRLRFQFSPTKEA 133 (135)
Q Consensus 99 vlyC~~G~~a~~~~~~l~~~gG~~~~~~~~~~~~~ 133 (135)
|++|.+|.|+-.+...+... ||+++-+|+|+|-|
T Consensus 93 If~C~SG~Rs~~A~~~l~s~-Gyknv~ny~Gs~~~ 126 (136)
T KOG1530|consen 93 IFGCASGVRSLKATKILVSA-GYKNVGNYPGSYLA 126 (136)
T ss_pred EEEeccCcchhHHHHHHHHc-CcccccccCccHHH
Confidence 99999999999999988775 99999999999854
No 2
>PLN02160 thiosulfate sulfurtransferase
Probab=99.84 E-value=1.4e-20 Score=128.98 Aligned_cols=109 Identities=54% Similarity=0.834 Sum_probs=85.5
Q ss_pred cCCCcceeCHHHHHHHhhCCCeEEecCChHHHhcCCCCCCceeCeeccccCCCCCCCChHHHHHHHhhccCCCcEEEEcC
Q 032698 24 SGAEVITVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQ 103 (135)
Q Consensus 24 ~~~~~~~is~~el~~~l~~~~~iIDvR~~~e~~~ghIpgA~~~nip~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvlyC~ 103 (135)
.....+.++++++.++++++..+||||++.||..||||||.-+|+|+....+...+.++++...+...++++++||+||+
T Consensus 10 ~~~~~~~i~~~e~~~~~~~~~~lIDVR~~~E~~~ghIpgA~~iniP~~~~~~~~~l~~~~~~~~~~~~~~~~~~IivyC~ 89 (136)
T PLN02160 10 KAEEVVSVDVSQAKTLLQSGHQYLDVRTQDEFRRGHCEAAKIVNIPYMLNTPQGRVKNQEFLEQVSSLLNPADDILVGCQ 89 (136)
T ss_pred CceeeeEeCHHHHHHHHhCCCEEEECCCHHHHhcCCCCCcceecccchhcCcccccCCHHHHHHHHhccCCCCcEEEECC
Confidence 34458889999999999877789999999999999999984457786433333444445554444443478899999999
Q ss_pred CCcchHHHHHHHHHhCCCceEeecCCCccc
Q 032698 104 SGARSLHATADLLGAVSFRLRFQFSPTKEA 133 (135)
Q Consensus 104 ~G~~a~~~~~~l~~~gG~~~~~~~~~~~~~ 133 (135)
+|.||..++..|.+. ||+.++.|.||+.+
T Consensus 90 sG~RS~~Aa~~L~~~-G~~~v~~l~GG~~~ 118 (136)
T PLN02160 90 SGARSLKATTELVAA-GYKKVRNKGGGYLA 118 (136)
T ss_pred CcHHHHHHHHHHHHc-CCCCeeecCCcHHH
Confidence 999999999988665 89999999999754
No 3
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=99.84 E-value=1.4e-20 Score=124.01 Aligned_cols=93 Identities=17% Similarity=0.267 Sum_probs=78.0
Q ss_pred CCcceeCHHHHHHHhhCC--CeEEecCChHHHhcCCCCCCceeCeeccccCCCCCCCChHHHHHHHhh-ccCCCcEEEEc
Q 032698 26 AEVITVDVRAAKNLLESG--YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL-CKEEDRLVVGC 102 (135)
Q Consensus 26 ~~~~~is~~el~~~l~~~--~~iIDvR~~~e~~~ghIpgA~~~nip~~~~~~~~~~~~~~~~~~~~~~-~~~~~~vvlyC 102 (135)
...+.++++++.+.++++ .++||||++.||..|||||| +|+|+. ++...+..+ .+++++||+||
T Consensus 7 ~~~~~i~~~~l~~~~~~~~~~~liDvR~~~e~~~ghIpga--inip~~-----------~l~~~~~~l~~~~~~~ivv~C 73 (109)
T cd01533 7 RHTPSVSADELAALQARGAPLVVLDGRRFDEYRKMTIPGS--VSCPGA-----------ELVLRVGELAPDPRTPIVVNC 73 (109)
T ss_pred ccCCcCCHHHHHHHHhcCCCcEEEeCCCHHHHhcCcCCCc--eeCCHH-----------HHHHHHHhcCCCCCCeEEEEC
Confidence 446789999999999764 58999999999999999999 999985 666666666 45688999999
Q ss_pred CCCcchHHHHHHHHHhCCCce-EeecCCCcc
Q 032698 103 QSGARSLHATADLLGAVSFRL-RFQFSPTKE 132 (135)
Q Consensus 103 ~~G~~a~~~~~~l~~~gG~~~-~~~~~~~~~ 132 (135)
++|.++..++..|.+ .||++ ++.+.||..
T Consensus 74 ~~G~rs~~a~~~L~~-~G~~~~v~~l~gG~~ 103 (109)
T cd01533 74 AGRTRSIIGAQSLIN-AGLPNPVAALRNGTQ 103 (109)
T ss_pred CCCchHHHHHHHHHH-CCCCcceeEecCCHH
Confidence 999999888887765 58876 899999864
No 4
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=99.84 E-value=1.2e-20 Score=121.41 Aligned_cols=88 Identities=18% Similarity=0.260 Sum_probs=72.4
Q ss_pred eCHHHHHHHhhCC---CeEEecCChHHHhcCCCCCCceeCeeccccCCCCCCCChHHHHHHHhh-ccCCCcEEEEcCCCc
Q 032698 31 VDVRAAKNLLESG---YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL-CKEEDRLVVGCQSGA 106 (135)
Q Consensus 31 is~~el~~~l~~~---~~iIDvR~~~e~~~ghIpgA~~~nip~~~~~~~~~~~~~~~~~~~~~~-~~~~~~vvlyC~~G~ 106 (135)
|+++|+.++++++ .++||||+++||..|||||| +|+|.. ++....... ..++++||+||.+|.
T Consensus 1 is~~~l~~~~~~~~~~~~liDvR~~~e~~~ghipga--~~ip~~-----------~l~~~~~~~~~~~~~~iv~~c~~G~ 67 (95)
T cd01534 1 IGAAELARWAAEGDRTVYRFDVRTPEEYEAGHLPGF--RHTPGG-----------QLVQETDHFAPVRGARIVLADDDGV 67 (95)
T ss_pred CCHHHHHHHHHcCCCCeEEEECCCHHHHHhCCCCCc--EeCCHH-----------HHHHHHHHhcccCCCeEEEECCCCC
Confidence 6889999999764 57999999999999999999 999984 444443333 235789999999999
Q ss_pred chHHHHHHHHHhCCCceEeecCCCccc
Q 032698 107 RSLHATADLLGAVSFRLRFQFSPTKEA 133 (135)
Q Consensus 107 ~a~~~~~~l~~~gG~~~~~~~~~~~~~ 133 (135)
++..++.+|.. .||+ ++.++||.++
T Consensus 68 rs~~aa~~L~~-~G~~-v~~l~GG~~~ 92 (95)
T cd01534 68 RADMTASWLAQ-MGWE-VYVLEGGLAA 92 (95)
T ss_pred hHHHHHHHHHH-cCCE-EEEecCcHHH
Confidence 99999998854 5999 8999999765
No 5
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=99.84 E-value=6.2e-21 Score=123.97 Aligned_cols=93 Identities=23% Similarity=0.248 Sum_probs=74.3
Q ss_pred eeCHHHHHHHhhC-CCeEEecCChHHHhcCCCCCCceeCeeccccCCCCCCCChHHHHHHHhh--ccCCCcEEEEcCCCc
Q 032698 30 TVDVRAAKNLLES-GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL--CKEEDRLVVGCQSGA 106 (135)
Q Consensus 30 ~is~~el~~~l~~-~~~iIDvR~~~e~~~ghIpgA~~~nip~~~~~~~~~~~~~~~~~~~~~~--~~~~~~vvlyC~~G~ 106 (135)
.|+++++.+++++ +.+|||||++.||..|||||| +|+|+.. +. .+...+... .+++++||+||++|.
T Consensus 3 ~is~~~l~~~~~~~~~~iiDvR~~~e~~~ghi~gA--~~ip~~~------~~--~~~~~~~~~~~~~~~~~ivvyC~~G~ 72 (101)
T cd01518 3 YLSPAEWNELLEDPEVVLLDVRNDYEYDIGHFKGA--VNPDVDT------FR--EFPFWLDENLDLLKGKKVLMYCTGGI 72 (101)
T ss_pred cCCHHHHHHHHcCCCEEEEEcCChhhhhcCEeccc--cCCCccc------Hh--HhHHHHHhhhhhcCCCEEEEECCCch
Confidence 5899999999876 468999999999999999999 9999841 11 111122221 378999999999999
Q ss_pred chHHHHHHHHHhCCCceEeecCCCccc
Q 032698 107 RSLHATADLLGAVSFRLRFQFSPTKEA 133 (135)
Q Consensus 107 ~a~~~~~~l~~~gG~~~~~~~~~~~~~ 133 (135)
++..++.+|.+. ||+++|.+.||..+
T Consensus 73 rs~~a~~~L~~~-G~~~v~~l~GG~~~ 98 (101)
T cd01518 73 RCEKASAYLKER-GFKNVYQLKGGILK 98 (101)
T ss_pred hHHHHHHHHHHh-CCcceeeechhHHH
Confidence 999999988654 99999999998654
No 6
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=99.83 E-value=1e-20 Score=123.49 Aligned_cols=99 Identities=23% Similarity=0.274 Sum_probs=78.3
Q ss_pred CHHHHHHHhh-C-CCeEEecCChHHHhcCCCCCCceeCeeccccCCCCCCCChHHHHHHHhh-ccCCCcEEEEcCCCcch
Q 032698 32 DVRAAKNLLE-S-GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL-CKEEDRLVVGCQSGARS 108 (135)
Q Consensus 32 s~~el~~~l~-~-~~~iIDvR~~~e~~~ghIpgA~~~nip~~~~~~~~~~~~~~~~~~~~~~-~~~~~~vvlyC~~G~~a 108 (135)
|++++.+.++ + +.+|||+|++.||..|||||| +|+|+........+...+|.+.+... ++++++||+||.+|.++
T Consensus 2 ~~~~~~~~l~~~~~~~iiDvR~~~e~~~ghIpgA--~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~c~~g~~s 79 (106)
T cd01519 2 SFEEVKNLPNPHPNKVLIDVREPEELKTGKIPGA--INIPLSSLPDALALSEEEFEKKYGFPKPSKDKELIFYCKAGVRS 79 (106)
T ss_pred cHHHHHHhcCCCCCEEEEECCCHHHHhcCcCCCc--EEechHHhhhhhCCCHHHHHHHhcccCCCCCCeEEEECCCcHHH
Confidence 6788999887 5 478999999999999999999 99998643222223334666666655 57789999999999999
Q ss_pred HHHHHHHHHhCCCceEeecCCCccc
Q 032698 109 LHATADLLGAVSFRLRFQFSPTKEA 133 (135)
Q Consensus 109 ~~~~~~l~~~gG~~~~~~~~~~~~~ 133 (135)
..++..|.. .||++++.|.||.++
T Consensus 80 ~~~~~~l~~-~G~~~v~~~~Gg~~~ 103 (106)
T cd01519 80 KAAAELARS-LGYENVGNYPGSWLD 103 (106)
T ss_pred HHHHHHHHH-cCCccceecCCcHHH
Confidence 888876654 599999999998764
No 7
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=99.82 E-value=5.7e-20 Score=119.14 Aligned_cols=91 Identities=20% Similarity=0.232 Sum_probs=72.8
Q ss_pred eCHHHHHHHhhCC--CeEEecCChHHHhcCCCCCCceeCeeccccCCCCCCCChHH----HHHHHhhccCCCcEEEEcCC
Q 032698 31 VDVRAAKNLLESG--YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDF----LKKVRSLCKEEDRLVVGCQS 104 (135)
Q Consensus 31 is~~el~~~l~~~--~~iIDvR~~~e~~~ghIpgA~~~nip~~~~~~~~~~~~~~~----~~~~~~~~~~~~~vvlyC~~ 104 (135)
|+++|+.++++++ .+|||||+++||..|||||| +|+|... +.. .+ ...... ++++++||+||.+
T Consensus 1 is~~el~~~l~~~~~~~liDvR~~~e~~~ghi~ga--~~ip~~~------~~~-~~~~~~~~~~~~-~~~~~~ivv~C~~ 70 (100)
T cd01523 1 LDPEDLYARLLAGQPLFILDVRNESDYERWKIDGE--NNTPYFD------PYF-DFLEIEEDILDQ-LPDDQEVTVICAK 70 (100)
T ss_pred CCHHHHHHHHHcCCCcEEEEeCCHHHHhhcccCCC--ccccccc------chH-HHHHhhHHHHhh-CCCCCeEEEEcCC
Confidence 5889999999773 68999999999999999999 9999841 110 11 112222 4889999999999
Q ss_pred CcchHHHHHHHHHhCCCceEeecCCCccc
Q 032698 105 GARSLHATADLLGAVSFRLRFQFSPTKEA 133 (135)
Q Consensus 105 G~~a~~~~~~l~~~gG~~~~~~~~~~~~~ 133 (135)
|.++..++..|.+. ||+ .+.+.||.++
T Consensus 71 G~rs~~aa~~L~~~-G~~-~~~l~GG~~~ 97 (100)
T cd01523 71 EGSSQFVAELLAER-GYD-VDYLAGGMKA 97 (100)
T ss_pred CCcHHHHHHHHHHc-Cce-eEEeCCcHHh
Confidence 99999999988765 898 9999999875
No 8
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=99.82 E-value=4e-20 Score=119.62 Aligned_cols=90 Identities=19% Similarity=0.281 Sum_probs=75.0
Q ss_pred ceeCHHHHHHHhhCCCeEEecCChHHHhcCCCCCCceeCeeccccCCCCCCCChHHHHHHHhhccCCCcEEEEcCCCcch
Q 032698 29 ITVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSGARS 108 (135)
Q Consensus 29 ~~is~~el~~~l~~~~~iIDvR~~~e~~~ghIpgA~~~nip~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvlyC~~G~~a 108 (135)
..++++|+.++++++.+|||+|+++||..|||||| +|+|.. ++...... ++++++||+||++|.++
T Consensus 2 ~~i~~~el~~~~~~~~~liDvR~~~e~~~~hi~ga--~~ip~~-----------~~~~~~~~-~~~~~~iv~~c~~g~~s 67 (99)
T cd01527 2 TTISPNDACELLAQGAVLVDIREPDEYLRERIPGA--RLVPLS-----------QLESEGLP-LVGANAIIFHCRSGMRT 67 (99)
T ss_pred CccCHHHHHHHHHCCCEEEECCCHHHHHhCcCCCC--EECChh-----------HhcccccC-CCCCCcEEEEeCCCchH
Confidence 56899999999988888999999999999999999 999984 33221112 47889999999999999
Q ss_pred HHHHHHHHHhCCCceEeecCCCccc
Q 032698 109 LHATADLLGAVSFRLRFQFSPTKEA 133 (135)
Q Consensus 109 ~~~~~~l~~~gG~~~~~~~~~~~~~ 133 (135)
..++..|.+. ||++.+.+.||+++
T Consensus 68 ~~~~~~L~~~-g~~~v~~l~gG~~~ 91 (99)
T cd01527 68 QQNAERLAAI-SAGEAYVLEGGLDA 91 (99)
T ss_pred HHHHHHHHHc-CCccEEEeeCCHHH
Confidence 9999888776 67678999999764
No 9
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=99.81 E-value=1.5e-19 Score=115.24 Aligned_cols=87 Identities=26% Similarity=0.431 Sum_probs=74.0
Q ss_pred eCHHHHHHHhhCCCeEEecCChHHHhcCCCCCCceeCeeccccCCCCCCCChHHHHHHHhhccCCCcEEEEcCCCcchHH
Q 032698 31 VDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSGARSLH 110 (135)
Q Consensus 31 is~~el~~~l~~~~~iIDvR~~~e~~~ghIpgA~~~nip~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvlyC~~G~~a~~ 110 (135)
++++|+.++++++.++||+|++++|..|||||| +|+|.. ++...+..+ +++++||+||++|.++..
T Consensus 1 ~~~~e~~~~~~~~~~iiD~R~~~~~~~~hipgA--~~ip~~-----------~~~~~~~~~-~~~~~vvl~c~~g~~a~~ 66 (90)
T cd01524 1 VQWHELDNYRADGVTLIDVRTPQEFEKGHIKGA--INIPLD-----------ELRDRLNEL-PKDKEIIVYCAVGLRGYI 66 (90)
T ss_pred CCHHHHHHHhcCCCEEEECCCHHHHhcCCCCCC--EeCCHH-----------HHHHHHHhc-CCCCcEEEEcCCChhHHH
Confidence 478999999976789999999999999999999 999984 565555554 788999999999999999
Q ss_pred HHHHHHHhCCCceEeecCCCccc
Q 032698 111 ATADLLGAVSFRLRFQFSPTKEA 133 (135)
Q Consensus 111 ~~~~l~~~gG~~~~~~~~~~~~~ 133 (135)
++..|.+ .|| .++.+.||.++
T Consensus 67 ~a~~L~~-~G~-~v~~l~GG~~~ 87 (90)
T cd01524 67 AARILTQ-NGF-KVKNLDGGYKT 87 (90)
T ss_pred HHHHHHH-CCC-CEEEecCCHHH
Confidence 8887765 477 79999999875
No 10
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=99.81 E-value=1.8e-19 Score=117.07 Aligned_cols=90 Identities=21% Similarity=0.358 Sum_probs=75.3
Q ss_pred eeCHHHHHHHhhCC---CeEEecCChHHHhcCCCCCCceeCeeccccCCCCCCCChHHHHHHHhh--ccCCCcEEEEcCC
Q 032698 30 TVDVRAAKNLLESG---YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL--CKEEDRLVVGCQS 104 (135)
Q Consensus 30 ~is~~el~~~l~~~---~~iIDvR~~~e~~~ghIpgA~~~nip~~~~~~~~~~~~~~~~~~~~~~--~~~~~~vvlyC~~ 104 (135)
.|+++++.++++.+ .+|||+|+++||..+||||| +|+|+. ++...+..+ .++++++|+||++
T Consensus 1 ~i~~~~l~~~~~~~~~~~~iiDvR~~~e~~~~hI~ga--~~ip~~-----------~~~~~~~~~~~~~~~~~vv~~c~~ 67 (101)
T cd01528 1 QISVAELAEWLADEREEPVLIDVREPEELEIAFLPGF--LHLPMS-----------EIPERSKELDSDNPDKDIVVLCHH 67 (101)
T ss_pred CCCHHHHHHHHhcCCCCCEEEECCCHHHHhcCcCCCC--EecCHH-----------HHHHHHHHhcccCCCCeEEEEeCC
Confidence 37899999999864 68999999999999999999 999984 444444444 1468999999999
Q ss_pred CcchHHHHHHHHHhCCCceEeecCCCccc
Q 032698 105 GARSLHATADLLGAVSFRLRFQFSPTKEA 133 (135)
Q Consensus 105 G~~a~~~~~~l~~~gG~~~~~~~~~~~~~ 133 (135)
|.++..++.+|.+ -||+.++.|.||+++
T Consensus 68 g~rs~~~~~~l~~-~G~~~v~~l~GG~~~ 95 (101)
T cd01528 68 GGRSMQVAQWLLR-QGFENVYNLQGGIDA 95 (101)
T ss_pred CchHHHHHHHHHH-cCCccEEEecCCHHH
Confidence 9999999998877 589989999999764
No 11
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=99.81 E-value=2.6e-19 Score=117.67 Aligned_cols=92 Identities=24% Similarity=0.348 Sum_probs=78.8
Q ss_pred CcceeCHHHHHHHhhC-CCeEEecCChHHHhcCCCCCCceeCeeccccCCCCCCCChHHHHHHHhhccCCCcEEEEcCCC
Q 032698 27 EVITVDVRAAKNLLES-GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSG 105 (135)
Q Consensus 27 ~~~~is~~el~~~l~~-~~~iIDvR~~~e~~~ghIpgA~~~nip~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvlyC~~G 105 (135)
.++.++++|+.+.+++ +.++||+|+++||..|||||| +|+|.. ++...+..+ ++++++++||.+|
T Consensus 3 ~~~~is~~el~~~l~~~~~~ivDvR~~~e~~~ghi~gA--~~ip~~-----------~l~~~~~~~-~~~~~ivv~c~~g 68 (108)
T PRK00162 3 QFECINVEQAHQKLQEGGAVLVDIRDPQSFAMGHAPGA--FHLTND-----------SLGAFMRQA-DFDTPVMVMCYHG 68 (108)
T ss_pred CccccCHHHHHHHHHcCCCEEEEcCCHHHHhcCCCCCC--eECCHH-----------HHHHHHHhc-CCCCCEEEEeCCC
Confidence 4678999999999976 578999999999999999999 999974 666666554 8899999999999
Q ss_pred cchHHHHHHHHHhCCCceEeecCCCccc
Q 032698 106 ARSLHATADLLGAVSFRLRFQFSPTKEA 133 (135)
Q Consensus 106 ~~a~~~~~~l~~~gG~~~~~~~~~~~~~ 133 (135)
.++..++..|.+. ||++++.+.||+++
T Consensus 69 ~~s~~a~~~L~~~-G~~~v~~l~GG~~~ 95 (108)
T PRK00162 69 NSSQGAAQYLLQQ-GFDVVYSIDGGFEA 95 (108)
T ss_pred CCHHHHHHHHHHC-CchheEEecCCHHH
Confidence 9998888877655 88889999999865
No 12
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=99.80 E-value=4.2e-19 Score=119.38 Aligned_cols=93 Identities=17% Similarity=0.259 Sum_probs=76.4
Q ss_pred ceeCHHHHHHHhhC-------CCeEEecCChHHHhcCCCCCCceeCeeccccCCCCCCCChHHHHHHHh----h-ccCCC
Q 032698 29 ITVDVRAAKNLLES-------GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRS----L-CKEED 96 (135)
Q Consensus 29 ~~is~~el~~~l~~-------~~~iIDvR~~~e~~~ghIpgA~~~nip~~~~~~~~~~~~~~~~~~~~~----~-~~~~~ 96 (135)
..|+++|+.+++++ +.+|||||+++||..|||||| +|+|.. .++...+.. + +++++
T Consensus 2 ~~Is~~el~~~l~~~~~~~~~~~~liDvR~~~e~~~ghI~gA--~~ip~~----------~~l~~~~~~~~~~~~~~~~~ 69 (121)
T cd01530 2 KRISPETLARLLQGKYDNFFDKYIIIDCRFPYEYNGGHIKGA--VNLSTK----------DELEEFFLDKPGVASKKKRR 69 (121)
T ss_pred CccCHHHHHHHHhcccccCCCCEEEEECCCHHHHhCCcCCCC--EeCCcH----------HHHHHHHHHhhcccccCCCC
Confidence 46999999999975 358999999999999999999 999973 123333322 1 47899
Q ss_pred cEEEEcC-CCcchHHHHHHHHHh-----------CCCceEeecCCCccc
Q 032698 97 RLVVGCQ-SGARSLHATADLLGA-----------VSFRLRFQFSPTKEA 133 (135)
Q Consensus 97 ~vvlyC~-~G~~a~~~~~~l~~~-----------gG~~~~~~~~~~~~~ 133 (135)
+||+||. +|.++..++++|.+. .||+++|.|.||..+
T Consensus 70 ~vv~yC~~sg~rs~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~~~ 118 (121)
T cd01530 70 VLIFHCEFSSKRGPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGYKN 118 (121)
T ss_pred EEEEECCCccccHHHHHHHHHHHhhhhccccCCCCCCCeEEEEcChhHh
Confidence 9999997 999999999999875 499999999999765
No 13
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=99.80 E-value=2.9e-19 Score=121.05 Aligned_cols=99 Identities=19% Similarity=0.275 Sum_probs=72.2
Q ss_pred eCHHHHHHHhhCCCeEEecCChHHHhcCCCCCCceeCeeccccCCCC----C---------------CCChHHHHH---H
Q 032698 31 VDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEG----R---------------VKNPDFLKK---V 88 (135)
Q Consensus 31 is~~el~~~l~~~~~iIDvR~~~e~~~ghIpgA~~~nip~~~~~~~~----~---------------~~~~~~~~~---~ 88 (135)
||++|+.++++++.+|||||+++||..|||||| +|+|+....... . +..+++.+. +
T Consensus 1 ~s~~el~~~l~~~~~iiDvR~~~e~~~ghIpgA--inip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (128)
T cd01520 1 ITAEDLLALRKADGPLIDVRSPKEFFEGHLPGA--INLPLLDDEERALVGTLYKQQGREAAIELGLELVSGKLKRILNEA 78 (128)
T ss_pred CCHHHHHHHHhcCCEEEECCCHHHhccCcCCCc--EEccCCChhHHHHhhhheeccCHHHHHHHHHHHHhhhHHHHHHHH
Confidence 689999999987789999999999999999999 999985221000 0 000122222 2
Q ss_pred Hhh-ccCCCcEEEEcC-CCcchHHHHHHHHHhCCCceEeecCCCccc
Q 032698 89 RSL-CKEEDRLVVGCQ-SGARSLHATADLLGAVSFRLRFQFSPTKEA 133 (135)
Q Consensus 89 ~~~-~~~~~~vvlyC~-~G~~a~~~~~~l~~~gG~~~~~~~~~~~~~ 133 (135)
... ++++++||+||. +|.++..+++.| +..||+ ++.+.||..|
T Consensus 79 ~~~~i~~~~~vvvyC~~~G~rs~~a~~~L-~~~G~~-v~~L~GG~~a 123 (128)
T cd01520 79 WEARLERDPKLLIYCARGGMRSQSLAWLL-ESLGID-VPLLEGGYKA 123 (128)
T ss_pred HHhccCCCCeEEEEeCCCCccHHHHHHHH-HHcCCc-eeEeCCcHHH
Confidence 212 588999999997 688888877544 666896 8999999754
No 14
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=99.80 E-value=5.9e-19 Score=113.14 Aligned_cols=89 Identities=22% Similarity=0.265 Sum_probs=75.8
Q ss_pred eeCHHHHHHHhhC--CCeEEecCChHHHhc--CCCCCCceeCeeccccCCCCCCCChHHHHHHHhhccCCCcEEEEcCCC
Q 032698 30 TVDVRAAKNLLES--GYGYLDVRTAEEFKE--GHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSG 105 (135)
Q Consensus 30 ~is~~el~~~l~~--~~~iIDvR~~~e~~~--ghIpgA~~~nip~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvlyC~~G 105 (135)
.++++++.+++++ +.++||+|++.+|.. |||||| +|+|.. ++...+..+ +++++||+||++|
T Consensus 1 ~i~~~~~~~~~~~~~~~~ivDvR~~~e~~~~~~hi~ga--~~ip~~-----------~~~~~~~~~-~~~~~ivv~c~~g 66 (96)
T cd01444 1 RISVDELAELLAAGEAPVLLDVRDPASYAALPDHIPGA--IHLDED-----------SLDDWLGDL-DRDRPVVVYCYHG 66 (96)
T ss_pred CcCHHHHHHHHhcCCCcEEEECCCHHHHhcccCCCCCC--eeCCHH-----------HHHHHHhhc-CCCCCEEEEeCCC
Confidence 3789999998876 378999999999999 999999 999985 565555554 8899999999999
Q ss_pred cchHHHHHHHHHhCCCceEeecCCCccc
Q 032698 106 ARSLHATADLLGAVSFRLRFQFSPTKEA 133 (135)
Q Consensus 106 ~~a~~~~~~l~~~gG~~~~~~~~~~~~~ 133 (135)
.++..++..|.+. ||++++.+.||.++
T Consensus 67 ~~s~~a~~~l~~~-G~~~v~~l~gG~~~ 93 (96)
T cd01444 67 NSSAQLAQALREA-GFTDVRSLAGGFEA 93 (96)
T ss_pred ChHHHHHHHHHHc-CCceEEEcCCCHHH
Confidence 9999998877665 88889999998764
No 15
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=99.78 E-value=1.8e-18 Score=115.48 Aligned_cols=98 Identities=24% Similarity=0.346 Sum_probs=77.7
Q ss_pred eCHHHHHHHhhC--CCeEEecCChHHHh-cCCCCCCceeCeeccccCCCCCCCChHHHHHHHhhccCCCcEEEEcCCCcc
Q 032698 31 VDVRAAKNLLES--GYGYLDVRTAEEFK-EGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSGAR 107 (135)
Q Consensus 31 is~~el~~~l~~--~~~iIDvR~~~e~~-~ghIpgA~~~nip~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvlyC~~G~~ 107 (135)
||++|+.+++++ +.++||||+++||. .|||||| +|+|...... ....+.+...+....+++++||+||.+|.+
T Consensus 1 is~~el~~~l~~~~~~~vIDvR~~~e~~~~ghIpgA--~~ip~~~~~~--~~~~~~~~~~l~~~~~~~~~ivv~C~~G~r 76 (117)
T cd01522 1 LTPAEAWALLQADPQAVLVDVRTEAEWKFVGGVPDA--VHVAWQVYPD--MEINPNFLAELEEKVGKDRPVLLLCRSGNR 76 (117)
T ss_pred CCHHHHHHHHHhCCCeEEEECCCHHHHhcccCCCCc--eecchhhccc--cccCHHHHHHHHhhCCCCCeEEEEcCCCcc
Confidence 589999999987 36899999999999 9999999 9999853221 111234555554444788999999999999
Q ss_pred hHHHHHHHHHhCCCceEeecCCCccc
Q 032698 108 SLHATADLLGAVSFRLRFQFSPTKEA 133 (135)
Q Consensus 108 a~~~~~~l~~~gG~~~~~~~~~~~~~ 133 (135)
+..++..|.+ .||++++.+.||-|+
T Consensus 77 s~~aa~~L~~-~G~~~v~~l~gG~~~ 101 (117)
T cd01522 77 SIAAAEAAAQ-AGFTNVYNVLEGFEG 101 (117)
T ss_pred HHHHHHHHHH-CCCCeEEECcCceec
Confidence 9999988865 589999999998775
No 16
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=99.78 E-value=8.6e-19 Score=117.72 Aligned_cols=100 Identities=23% Similarity=0.257 Sum_probs=75.5
Q ss_pred CcceeCHHHHHHHhhC--CCeEEecCChHHHhcCCCCCCceeCeeccccCCCCCCCChHHHH-HHHhh-ccCCCcEEEEc
Q 032698 27 EVITVDVRAAKNLLES--GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLK-KVRSL-CKEEDRLVVGC 102 (135)
Q Consensus 27 ~~~~is~~el~~~l~~--~~~iIDvR~~~e~~~ghIpgA~~~nip~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~vvlyC 102 (135)
....++++++.+++++ +.+|||+|+++||..|||||| +|+|+....... .++.. ..... ++++++||+||
T Consensus 6 ~~~~is~~el~~~~~~~~~~~ivDvR~~~e~~~~hIpga--i~ip~~~~~~~~----~~~~~~~~~~~~~~~~~~ivv~C 79 (122)
T cd01526 6 PEERVSVKDYKNILQAGKKHVLLDVRPKVHFEICRLPEA--INIPLSELLSKA----AELKSLQELPLDNDKDSPIYVVC 79 (122)
T ss_pred cccccCHHHHHHHHhCCCCeEEEEcCCHHHhhcccCCCC--eEccHHHHhhhh----hhhhhhhhcccccCCCCcEEEEC
Confidence 4567999999999876 368999999999999999999 999985211100 01111 11122 47899999999
Q ss_pred CCCcchHHHHHHHHHhCCC-ceEeecCCCccc
Q 032698 103 QSGARSLHATADLLGAVSF-RLRFQFSPTKEA 133 (135)
Q Consensus 103 ~~G~~a~~~~~~l~~~gG~-~~~~~~~~~~~~ 133 (135)
++|.++..++..|.+. || ++++.+.||.++
T Consensus 80 ~~G~rs~~aa~~L~~~-G~~~~v~~l~GG~~~ 110 (122)
T cd01526 80 RRGNDSQTAVRKLKEL-GLERFVRDIIGGLKA 110 (122)
T ss_pred CCCCcHHHHHHHHHHc-CCccceeeecchHHH
Confidence 9999999999877665 88 788999998754
No 17
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=99.77 E-value=7.7e-19 Score=114.51 Aligned_cols=97 Identities=19% Similarity=0.317 Sum_probs=72.0
Q ss_pred eCHHHHHHHhhC---CCeEEecCChHHHhcCCCCCCceeCeeccccCCC-CCCC-ChHHHHHHHhhccCCCcEEEEcCCC
Q 032698 31 VDVRAAKNLLES---GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPE-GRVK-NPDFLKKVRSLCKEEDRLVVGCQSG 105 (135)
Q Consensus 31 is~~el~~~l~~---~~~iIDvR~~~e~~~ghIpgA~~~nip~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~vvlyC~~G 105 (135)
||++|+.+++++ +.+|||+|++.||..|||||| +|+|+...... ..+. -+. ...+.. .++++||+||.+|
T Consensus 1 is~~~l~~~l~~~~~~~~liDvR~~~e~~~ghIpgA--~~ip~~~~~~~~~~~~~~~~-~~~~~~--~~~~~vv~~c~~g 75 (105)
T cd01525 1 ISVYDVIRLLDNSPAKLAAVDIRSSPDFRRGHIEGS--INIPFSSVFLKEGELEQLPT-VPRLEN--YKGKIIVIVSHSH 75 (105)
T ss_pred CCHHHHHHHHhCCCCCeEEEECCCHHHHhCCccCCC--EeCCHHHhcccccccccccc-hHHHHh--hcCCeEEEEeCCC
Confidence 689999999976 358999999999999999999 99998532110 1110 000 112222 3588999999999
Q ss_pred cchHHHHHHHHHhCCCceEeecCCCccc
Q 032698 106 ARSLHATADLLGAVSFRLRFQFSPTKEA 133 (135)
Q Consensus 106 ~~a~~~~~~l~~~gG~~~~~~~~~~~~~ 133 (135)
.++..+++.|.. .||++++.+.||.+|
T Consensus 76 ~~s~~~a~~L~~-~G~~~v~~l~GG~~a 102 (105)
T cd01525 76 KHAALFAAFLVK-CGVPRVCILDGGINA 102 (105)
T ss_pred ccHHHHHHHHHH-cCCCCEEEEeCcHHH
Confidence 999988887655 599989999999876
No 18
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=99.76 E-value=3.7e-18 Score=114.21 Aligned_cols=100 Identities=20% Similarity=0.138 Sum_probs=78.1
Q ss_pred eCHHHHHHHhhC-CCeEEecCCh-------HHHhcCCCCCCceeCeeccccCC-----CCCCCC-hHHHHHHHhh-ccCC
Q 032698 31 VDVRAAKNLLES-GYGYLDVRTA-------EEFKEGHVDAAKIFNIPYMFNTP-----EGRVKN-PDFLKKVRSL-CKEE 95 (135)
Q Consensus 31 is~~el~~~l~~-~~~iIDvR~~-------~e~~~ghIpgA~~~nip~~~~~~-----~~~~~~-~~~~~~~~~~-~~~~ 95 (135)
++++++.+++++ +.+|||+|++ ++|..|||||| +|+|...... ...+.+ .++.+.+... ++++
T Consensus 2 i~~~~l~~~l~~~~~~ivDvR~~~~~~~~~~~~~~ghI~ga--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (122)
T cd01448 2 VSPDWLAEHLDDPDVRILDARWYLPDRDGRKEYLEGHIPGA--VFFDLDEDLDDKSPGPHMLPSPEEFAELLGSLGISND 79 (122)
T ss_pred cCHHHHHHHhCCCCeEEEEeecCCCCCchhhHHhhCCCCCC--EEcChhhccccCCCCCCCCCCHHHHHHHHHHcCCCCC
Confidence 789999999987 5789999999 99999999999 9999754322 122333 3566666655 6889
Q ss_pred CcEEEEcCCC-cchHHHHHHHHHhCCCceEeecCCCccc
Q 032698 96 DRLVVGCQSG-ARSLHATADLLGAVSFRLRFQFSPTKEA 133 (135)
Q Consensus 96 ~~vvlyC~~G-~~a~~~~~~l~~~gG~~~~~~~~~~~~~ 133 (135)
++||+||++| .++..+++.| +..||++++.|+||+++
T Consensus 80 ~~vv~~c~~g~~~a~~~~~~l-~~~G~~~v~~l~GG~~~ 117 (122)
T cd01448 80 DTVVVYDDGGGFFAARAWWTL-RYFGHENVRVLDGGLQA 117 (122)
T ss_pred CEEEEECCCCCccHHHHHHHH-HHcCCCCEEEecCCHHH
Confidence 9999999984 7777776655 45599999999999864
No 19
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=99.76 E-value=3e-18 Score=113.91 Aligned_cols=100 Identities=21% Similarity=0.329 Sum_probs=77.7
Q ss_pred eCHHHHHHHhhC-CCeEEecCChHHHhc-----------CCCCCCceeCeeccccCC-CCCCCC-hHHHHHHHhh-ccCC
Q 032698 31 VDVRAAKNLLES-GYGYLDVRTAEEFKE-----------GHVDAAKIFNIPYMFNTP-EGRVKN-PDFLKKVRSL-CKEE 95 (135)
Q Consensus 31 is~~el~~~l~~-~~~iIDvR~~~e~~~-----------ghIpgA~~~nip~~~~~~-~~~~~~-~~~~~~~~~~-~~~~ 95 (135)
++++++.+++++ +.+|||+|++.||.. |||||| +|+|+..... ...++. .++...+..+ ++++
T Consensus 1 ~s~~~l~~~l~~~~~~iiDvR~~~e~~~~~~~~~~~~~~ghIpgA--~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (118)
T cd01449 1 VTAEEVLANLDSGDVQLVDARSPERFRGEVPEPRPGLRSGHIPGA--VNIPWTSLLDEDGTFKSPEELRALFAALGITPD 78 (118)
T ss_pred CCHHHHHHhcCCCCcEEEeCCCHHHcCCcCCCCCCCCcCCcCCCC--cccChHHhcCCCCCcCCHHHHHHHHHHcCCCCC
Confidence 578999999876 479999999999976 999999 9999853321 122332 2455566665 6789
Q ss_pred CcEEEEcCCCcchHHHHHHHHHhCCCceEeecCCCccc
Q 032698 96 DRLVVGCQSGARSLHATADLLGAVSFRLRFQFSPTKEA 133 (135)
Q Consensus 96 ~~vvlyC~~G~~a~~~~~~l~~~gG~~~~~~~~~~~~~ 133 (135)
++||+||++|.++..++..|. ..||++++.|.||+++
T Consensus 79 ~~iv~yc~~g~~s~~~~~~l~-~~G~~~v~~l~GG~~~ 115 (118)
T cd01449 79 KPVIVYCGSGVTACVLLLALE-LLGYKNVRLYDGSWSE 115 (118)
T ss_pred CCEEEECCcHHHHHHHHHHHH-HcCCCCeeeeCChHHH
Confidence 999999999999988887664 4599989999998765
No 20
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=99.76 E-value=4.1e-18 Score=112.44 Aligned_cols=91 Identities=23% Similarity=0.338 Sum_probs=71.7
Q ss_pred cceeCHHHHHHHhhCC---CeEEecCChHHHhcCCCCCCceeCeeccccCCCCCCCChHHHHHHHhhccCCCcEEEEcCC
Q 032698 28 VITVDVRAAKNLLESG---YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQS 104 (135)
Q Consensus 28 ~~~is~~el~~~l~~~---~~iIDvR~~~e~~~ghIpgA~~~nip~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvlyC~~ 104 (135)
...++++|+.++++++ .+|||+|++.+|..|||||| +|+|.. .+.......++++++||+||++
T Consensus 7 ~~~~s~~el~~~l~~~~~~~~iiDvR~~~e~~~ghIpgA--~~ip~~-----------~l~~~~~~~i~~~~~vvvyc~~ 73 (110)
T cd01521 7 AFETDCWDVAIALKNGKPDFVLVDVRSAEAYARGHVPGA--INLPHR-----------EICENATAKLDKEKLFVVYCDG 73 (110)
T ss_pred eeecCHHHHHHHHHcCCCCEEEEECCCHHHHhcCCCCCC--EeCCHH-----------HhhhHhhhcCCCCCeEEEEECC
Confidence 4569999999999763 68999999999999999999 999984 3321211225889999999998
Q ss_pred Cc--chHHHHHHHHHhCCCceEeecCCCccc
Q 032698 105 GA--RSLHATADLLGAVSFRLRFQFSPTKEA 133 (135)
Q Consensus 105 G~--~a~~~~~~l~~~gG~~~~~~~~~~~~~ 133 (135)
|. ++..+++.|.+. ||+ ++.|.||.++
T Consensus 74 g~~~~s~~~a~~l~~~-G~~-v~~l~GG~~~ 102 (110)
T cd01521 74 PGCNGATKAALKLAEL-GFP-VKEMIGGLDW 102 (110)
T ss_pred CCCchHHHHHHHHHHc-CCe-EEEecCCHHH
Confidence 74 778888777655 887 7899998764
No 21
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=99.75 E-value=3.2e-18 Score=110.96 Aligned_cols=95 Identities=23% Similarity=0.285 Sum_probs=70.1
Q ss_pred eCHHHHHHHhhC-CCeEEecCChHHH-hcCCCCCCceeCeeccccCCCCCCCChHHHHHHHh-hccCCCcEEEEcCCCcc
Q 032698 31 VDVRAAKNLLES-GYGYLDVRTAEEF-KEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRS-LCKEEDRLVVGCQSGAR 107 (135)
Q Consensus 31 is~~el~~~l~~-~~~iIDvR~~~e~-~~ghIpgA~~~nip~~~~~~~~~~~~~~~~~~~~~-~~~~~~~vvlyC~~G~~ 107 (135)
++++|+.+++++ +.+|||+|++.+| ..|||||| +|+|+.......... ..+.. .++++++||+||++|.+
T Consensus 1 is~~el~~~~~~~~~~iiDvR~~~~~~~~ghIpga--~~ip~~~~~~~~~~~-----~~~~~~~~~~~~~ivv~c~~g~~ 73 (103)
T cd01447 1 LSPEDARALLGSPGVLLVDVRDPRELERTGMIPGA--FHAPRGMLEFWADPD-----SPYHKPAFAEDKPFVFYCASGWR 73 (103)
T ss_pred CCHHHHHHHHhCCCeEEEECCCHHHHHhcCCCCCc--EEcccchhhhhcCcc-----ccccccCCCCCCeEEEEcCCCCc
Confidence 578999999886 5789999999998 57999999 999974211000000 00011 14789999999999999
Q ss_pred hHHHHHHHHHhCCCceEeecCCCccc
Q 032698 108 SLHATADLLGAVSFRLRFQFSPTKEA 133 (135)
Q Consensus 108 a~~~~~~l~~~gG~~~~~~~~~~~~~ 133 (135)
+..+++.|. ..||++++.|.||+++
T Consensus 74 s~~~~~~l~-~~G~~~v~~l~Gg~~~ 98 (103)
T cd01447 74 SALAGKTLQ-DMGLKPVYNIEGGFKD 98 (103)
T ss_pred HHHHHHHHH-HcChHHhEeecCcHHH
Confidence 888777665 5699988899998765
No 22
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=99.75 E-value=1e-17 Score=117.95 Aligned_cols=107 Identities=15% Similarity=0.150 Sum_probs=75.8
Q ss_pred cCCCcceeCHHHHHHHhhC-CCeEEecCChH----HHhc---------CCCCCCceeCeeccccCCCCCCCChHHHHHHH
Q 032698 24 SGAEVITVDVRAAKNLLES-GYGYLDVRTAE----EFKE---------GHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVR 89 (135)
Q Consensus 24 ~~~~~~~is~~el~~~l~~-~~~iIDvR~~~----e~~~---------ghIpgA~~~nip~~~~~~~~~~~~~~~~~~~~ 89 (135)
+......|+++|+.+++++ +.+|||||+++ ||.+ +||||| +|+|+...........+.+...+.
T Consensus 31 ~~~~~~~vs~~el~~~l~~~~~~lIDVR~~~~~~~e~~~G~~~~~~~~~HIPGA--v~ip~~~~~~l~~~~~~~~~~~l~ 108 (162)
T TIGR03865 31 TLKGARVLDTEAAQALLARGPVALIDVYPRPPKPKNLLEGTVWRDEPRLNIPGS--LWLPNTGYGNLAPAWQAYFRRGLE 108 (162)
T ss_pred ccCCccccCHHHHHHHHhCCCcEEEECCCCccccccccccceeccccCCCCCCc--EEecccCCCCCCCchhHHHHHHHH
Confidence 3445688999999999987 47899999865 4544 499999 999863211111111123555565
Q ss_pred hh--ccCCCcEEEEcCCCc-chHHHHHHHHHhCCCceEeecCCCccc
Q 032698 90 SL--CKEEDRLVVGCQSGA-RSLHATADLLGAVSFRLRFQFSPTKEA 133 (135)
Q Consensus 90 ~~--~~~~~~vvlyC~~G~-~a~~~~~~l~~~gG~~~~~~~~~~~~~ 133 (135)
++ .+++++||+||++|. ++..+++.| +..||++++.|.||+.+
T Consensus 109 ~~~~~~~d~~IVvYC~~G~~~S~~aa~~L-~~~G~~~V~~l~GG~~a 154 (162)
T TIGR03865 109 RATGGDKDRPLVFYCLADCWMSWNAAKRA-LAYGYSNVYWYPDGTDG 154 (162)
T ss_pred HhcCCCCCCEEEEEECCCCHHHHHHHHHH-HhcCCcceEEecCCHHH
Confidence 54 268999999999987 566666555 55699999999999764
No 23
>PRK01415 hypothetical protein; Validated
Probab=99.74 E-value=7.4e-18 Score=125.40 Aligned_cols=93 Identities=15% Similarity=0.182 Sum_probs=76.1
Q ss_pred cceeCHHHHHHHhhC-CCeEEecCChHHHhcCCCCCCceeCeeccccCCCCCCCChHHHHHHHhh--ccCCCcEEEEcCC
Q 032698 28 VITVDVRAAKNLLES-GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL--CKEEDRLVVGCQS 104 (135)
Q Consensus 28 ~~~is~~el~~~l~~-~~~iIDvR~~~e~~~ghIpgA~~~nip~~~~~~~~~~~~~~~~~~~~~~--~~~~~~vvlyC~~ 104 (135)
-..|+|+++.+++++ +.++||||++.||..|||||| +|+|.. .+. ++..+.... ++++++|++||.+
T Consensus 111 g~~i~p~e~~~ll~~~~~vvIDVRn~~E~~~Ghi~gA--inip~~------~f~--e~~~~~~~~~~~~k~k~Iv~yCtg 180 (247)
T PRK01415 111 GEYIEPKDWDEFITKQDVIVIDTRNDYEVEVGTFKSA--INPNTK------TFK--QFPAWVQQNQELLKGKKIAMVCTG 180 (247)
T ss_pred ccccCHHHHHHHHhCCCcEEEECCCHHHHhcCCcCCC--CCCChH------HHh--hhHHHHhhhhhhcCCCeEEEECCC
Confidence 467999999999987 578999999999999999999 999973 111 222223221 4789999999999
Q ss_pred CcchHHHHHHHHHhCCCceEeecCCCc
Q 032698 105 GARSLHATADLLGAVSFRLRFQFSPTK 131 (135)
Q Consensus 105 G~~a~~~~~~l~~~gG~~~~~~~~~~~ 131 (135)
|.|+..++.+|.+. ||+++|+|.||.
T Consensus 181 GiRs~kAa~~L~~~-Gf~~Vy~L~GGi 206 (247)
T PRK01415 181 GIRCEKSTSLLKSI-GYDEVYHLKGGI 206 (247)
T ss_pred ChHHHHHHHHHHHc-CCCcEEEechHH
Confidence 99999999988776 899999999974
No 24
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=99.74 E-value=6.7e-18 Score=108.68 Aligned_cols=82 Identities=23% Similarity=0.309 Sum_probs=62.9
Q ss_pred CCeEEecCChHHHhcCCCCCCceeCeeccccCCCCCCCChHHHHHHHhhccCCCcEEEEcCCCcchHHHHHHHHHhCCCc
Q 032698 43 GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAVSFR 122 (135)
Q Consensus 43 ~~~iIDvR~~~e~~~ghIpgA~~~nip~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvlyC~~G~~a~~~~~~l~~~gG~~ 122 (135)
+.+|||+|++++|..|||||| +|+|+... ....+..+.+.. .+++++||+||++|.++..++.+|.+ .||+
T Consensus 12 ~~~iiDvR~~~~~~~~hIpgA--~~ip~~~~-----~~~~~~~~~~~~-~~~~~~ivv~c~~g~~s~~~~~~l~~-~G~~ 82 (96)
T cd01529 12 GTALLDVRAEDEYAAGHLPGK--RSIPGAAL-----VLRSQELQALEA-PGRATRYVLTCDGSLLARFAAQELLA-LGGK 82 (96)
T ss_pred CeEEEeCCCHHHHcCCCCCCc--EeCCHHHh-----cCCHHHHHHhhc-CCCCCCEEEEeCChHHHHHHHHHHHH-cCCC
Confidence 478999999999999999999 99997411 111121112222 37889999999999999999988855 5999
Q ss_pred eEeecCCCccc
Q 032698 123 LRFQFSPTKEA 133 (135)
Q Consensus 123 ~~~~~~~~~~~ 133 (135)
+++.|.||.++
T Consensus 83 ~v~~l~GG~~~ 93 (96)
T cd01529 83 PVALLDGGTSA 93 (96)
T ss_pred CEEEeCCCHHH
Confidence 89999998764
No 25
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=99.73 E-value=2.1e-17 Score=109.50 Aligned_cols=95 Identities=16% Similarity=0.206 Sum_probs=70.1
Q ss_pred ceeCHHHHHHHhhCC-------CeEEecCChHHHhcCCCCCCceeCeeccccCCCCCCCChHHHHHHHhh-ccCCCcEEE
Q 032698 29 ITVDVRAAKNLLESG-------YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL-CKEEDRLVV 100 (135)
Q Consensus 29 ~~is~~el~~~l~~~-------~~iIDvR~~~e~~~ghIpgA~~~nip~~~~~~~~~~~~~~~~~~~~~~-~~~~~~vvl 100 (135)
+.++++|++++++++ .+|||||++ ||..|||||| +|+|... +. ..+.+.+... ..+.++||+
T Consensus 2 ~~is~~el~~~l~~~~~~~~~~~~iiDvR~~-ef~~ghipgA--i~ip~~~------~~-~~~~~~~~~~~~~~~~~iv~ 71 (113)
T cd01443 2 KYISPEELVALLENSDSNAGKDFVVVDLRRD-DYEGGHIKGS--INLPAQS------CY-QTLPQVYALFSLAGVKLAIF 71 (113)
T ss_pred cccCHHHHHHHHhCCccccCCcEEEEECCch-hcCCCcccCc--eecchhH------HH-HHHHHHHHHhhhcCCCEEEE
Confidence 568999999999764 579999999 9999999999 9999851 11 0111122211 135678999
Q ss_pred EcCC-CcchHHHHHHHHHh----C-CCceEeecCCCccc
Q 032698 101 GCQS-GARSLHATADLLGA----V-SFRLRFQFSPTKEA 133 (135)
Q Consensus 101 yC~~-G~~a~~~~~~l~~~----g-G~~~~~~~~~~~~~ 133 (135)
||.+ |.++..++.++.+. | |+...|.+.||.++
T Consensus 72 ~C~~~g~rs~~a~~~l~~~l~~~G~~~~~v~~l~GG~~~ 110 (113)
T cd01443 72 YCGSSQGRGPRAARWFADYLRKVGESLPKSYILTGGIKA 110 (113)
T ss_pred ECCCCCcccHHHHHHHHHHHhccCCCCCeEEEECChhhh
Confidence 9996 67888888776654 4 46789999999876
No 26
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=99.72 E-value=2.6e-17 Score=113.00 Aligned_cols=101 Identities=16% Similarity=0.117 Sum_probs=77.2
Q ss_pred eCHHHHHHHhh----C-CCeEEecCCh--------HHHhc------------CCCCCCceeCeeccccC-CCC----CCC
Q 032698 31 VDVRAAKNLLE----S-GYGYLDVRTA--------EEFKE------------GHVDAAKIFNIPYMFNT-PEG----RVK 80 (135)
Q Consensus 31 is~~el~~~l~----~-~~~iIDvR~~--------~e~~~------------ghIpgA~~~nip~~~~~-~~~----~~~ 80 (135)
+|++|+.+.++ + +.+|||+|+. ++|.+ |||||| +++|+.... ... .++
T Consensus 1 vs~e~l~~~l~~~~~~~~~~iiD~r~~~~~~~~~~~~y~~~~~~~~~~~~~~GHIPgA--v~~~~~~~~~~~~~~~~~~p 78 (138)
T cd01445 1 KSTEQLAENLEAGKVGKGFQLLDARAQSPGTREARGEYLETQPEPDAVGLDSGHIPGA--SFFDFEECLDEAGFEESMEP 78 (138)
T ss_pred CCHHHHHHHhhccccCCCeEEEEccCCCccCcchhhhhcccCCCCCcCCCcCCcCCCC--EeeCHHHhhCcCCCCCCCCC
Confidence 58899999998 3 4789999987 88988 999999 888864321 111 122
Q ss_pred C-hHHHHHHHhh-ccCCCcEEEEcCC--CcchHHHHHHHHHhCCCceEeecCCCccc
Q 032698 81 N-PDFLKKVRSL-CKEEDRLVVGCQS--GARSLHATADLLGAVSFRLRFQFSPTKEA 133 (135)
Q Consensus 81 ~-~~~~~~~~~~-~~~~~~vvlyC~~--G~~a~~~~~~l~~~gG~~~~~~~~~~~~~ 133 (135)
+ .+|.+.+..+ ++++++||+||++ +...+..++|+++..|+++++.|+|++++
T Consensus 79 ~~~~~~~~~~~~GI~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v~ildGG~~~ 135 (138)
T cd01445 79 SEAEFAAMFEAKGIDLDKHLIATDGDDLGGFTACHIALAARLCGHPDVAILDGGFFE 135 (138)
T ss_pred CHHHHHHHHHHcCCCCCCeEEEECCCCCcchHHHHHHHHHHHcCCCCeEEeCCCHHH
Confidence 2 3788888887 8899999999985 34444455667788899999999999875
No 27
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=99.71 E-value=3.5e-17 Score=107.34 Aligned_cols=76 Identities=21% Similarity=0.373 Sum_probs=63.8
Q ss_pred CCeEEecCChHHHhcCCCCCCceeCeeccccCCCCCCCChHHHHHHHhh-ccCCCcEEEEcCCCcchHHHHHHHHHhCCC
Q 032698 43 GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL-CKEEDRLVVGCQSGARSLHATADLLGAVSF 121 (135)
Q Consensus 43 ~~~iIDvR~~~e~~~ghIpgA~~~nip~~~~~~~~~~~~~~~~~~~~~~-~~~~~~vvlyC~~G~~a~~~~~~l~~~gG~ 121 (135)
..++||+|+++||..+||||| +|+|+. ++...+..+ .+++++||+||++|.++..++..|.+ .||
T Consensus 20 ~~~lIDvR~~~ef~~ghIpGA--iniP~~-----------~l~~~l~~l~~~~~~~IVlyC~~G~rS~~aa~~L~~-~G~ 85 (104)
T PRK10287 20 AEHWIDVRVPEQYQQEHVQGA--INIPLK-----------EVKERIATAVPDKNDTVKLYCNAGRQSGQAKEILSE-MGY 85 (104)
T ss_pred CCEEEECCCHHHHhcCCCCcc--EECCHH-----------HHHHHHHhcCCCCCCeEEEEeCCChHHHHHHHHHHH-cCC
Confidence 358999999999999999999 999985 666666666 46678899999999999999988865 589
Q ss_pred ceEeecCCCccc
Q 032698 122 RLRFQFSPTKEA 133 (135)
Q Consensus 122 ~~~~~~~~~~~~ 133 (135)
++++. .||.++
T Consensus 86 ~~v~~-~GG~~~ 96 (104)
T PRK10287 86 THAEN-AGGLKD 96 (104)
T ss_pred CeEEe-cCCHHH
Confidence 88877 577764
No 28
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=99.71 E-value=3.9e-17 Score=125.68 Aligned_cols=95 Identities=20% Similarity=0.313 Sum_probs=77.3
Q ss_pred cceeCHHHHHHHhhC-CCeEEecCChHHHhcCCCCCCceeCeeccccCCCCCCCChHHHHHHHh-h-ccCCCcEEEEcCC
Q 032698 28 VITVDVRAAKNLLES-GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRS-L-CKEEDRLVVGCQS 104 (135)
Q Consensus 28 ~~~is~~el~~~l~~-~~~iIDvR~~~e~~~ghIpgA~~~nip~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~vvlyC~~ 104 (135)
...++++|+.+++++ +.+|||||++.||..|||||| +|+|... +. ++..++.+ + ..++++||+||.+
T Consensus 111 ~~~is~~el~~~l~~~~~vlIDVR~~~E~~~GhI~GA--i~ip~~~------~~--~~~~~l~~~~~~~kdk~IvvyC~~ 180 (314)
T PRK00142 111 GTYLKPKEVNELLDDPDVVFIDMRNDYEYEIGHFENA--IEPDIET------FR--EFPPWVEENLDPLKDKKVVMYCTG 180 (314)
T ss_pred CcccCHHHHHHHhcCCCeEEEECCCHHHHhcCcCCCC--EeCCHHH------hh--hhHHHHHHhcCCCCcCeEEEECCC
Confidence 467999999999987 479999999999999999999 9999841 11 22233322 2 3688999999999
Q ss_pred CcchHHHHHHHHHhCCCceEeecCCCccc
Q 032698 105 GARSLHATADLLGAVSFRLRFQFSPTKEA 133 (135)
Q Consensus 105 G~~a~~~~~~l~~~gG~~~~~~~~~~~~~ 133 (135)
|.|+..++.+|++. ||+++|+|.||..+
T Consensus 181 G~Rs~~aa~~L~~~-Gf~~V~~L~GGi~~ 208 (314)
T PRK00142 181 GIRCEKASAWMKHE-GFKEVYQLEGGIIT 208 (314)
T ss_pred CcHHHHHHHHHHHc-CCCcEEEecchHHH
Confidence 99999999988775 99999999999754
No 29
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=99.71 E-value=3.9e-17 Score=106.61 Aligned_cols=76 Identities=21% Similarity=0.367 Sum_probs=63.2
Q ss_pred CCeEEecCChHHHhcCCCCCCceeCeeccccCCCCCCCChHHHHHHHhh-ccCCCcEEEEcCCCcchHHHHHHHHHhCCC
Q 032698 43 GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL-CKEEDRLVVGCQSGARSLHATADLLGAVSF 121 (135)
Q Consensus 43 ~~~iIDvR~~~e~~~ghIpgA~~~nip~~~~~~~~~~~~~~~~~~~~~~-~~~~~~vvlyC~~G~~a~~~~~~l~~~gG~ 121 (135)
...+||+|+++||.+|||||| +|+|.. ++...+.+. .+++++||+||++|.++..++..|.+ .||
T Consensus 18 ~~~lIDvR~~~ef~~ghIpgA--inip~~-----------~l~~~l~~~~~~~~~~vvlyC~~G~rS~~aa~~L~~-~G~ 83 (101)
T TIGR02981 18 AEHWIDVRIPEQYQQEHIQGA--INIPLK-----------EIKEHIATAVPDKNDTVKLYCNAGRQSGMAKDILLD-MGY 83 (101)
T ss_pred CCEEEECCCHHHHhcCCCCCC--EECCHH-----------HHHHHHHHhCCCCCCeEEEEeCCCHHHHHHHHHHHH-cCC
Confidence 357999999999999999999 999985 666666655 46778999999999999999887766 599
Q ss_pred ceEeecCCCccc
Q 032698 122 RLRFQFSPTKEA 133 (135)
Q Consensus 122 ~~~~~~~~~~~~ 133 (135)
++.+.+ ||.++
T Consensus 84 ~~v~~~-GG~~~ 94 (101)
T TIGR02981 84 THAENA-GGIKD 94 (101)
T ss_pred CeEEec-CCHHH
Confidence 988876 77654
No 30
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=99.71 E-value=5.2e-17 Score=106.24 Aligned_cols=99 Identities=28% Similarity=0.419 Sum_probs=72.6
Q ss_pred CHHHHHHHhhC-CCeEEecCChHHHhcCCCCCCceeCeeccccCCCCCCCC-hHHHHHHHhh---ccCCCcEEEEcCCCc
Q 032698 32 DVRAAKNLLES-GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKN-PDFLKKVRSL---CKEEDRLVVGCQSGA 106 (135)
Q Consensus 32 s~~el~~~l~~-~~~iIDvR~~~e~~~ghIpgA~~~nip~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~vvlyC~~G~ 106 (135)
||+|+.+.+++ +.+|||+|++.+|..|||||| +|+|............ ..+....... ++++++||+||.+|.
T Consensus 1 s~~el~~~l~~~~~~liD~R~~~~~~~~hI~ga--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~yc~~~~ 78 (113)
T PF00581_consen 1 SPEELKEMLENESVLLIDVRSPEEYERGHIPGA--VNIPFPSLDPDEPSLSEDKLDEFLKELGKKIDKDKDIVFYCSSGW 78 (113)
T ss_dssp -HHHHHHHHTTTTEEEEEESSHHHHHHSBETTE--EEEEGGGGSSSSSBCHHHHHHHHHHHHTHGSTTTSEEEEEESSSC
T ss_pred CHHHHHhhhhCCCeEEEEeCCHHHHHcCCCCCC--ccccccccccccccccccccccccccccccccccccceeeeeccc
Confidence 68999999944 579999999999999999999 9999854311111111 1222222222 478889999998888
Q ss_pred chHHHHHH-----HHHhCCCceEeecCCCccc
Q 032698 107 RSLHATAD-----LLGAVSFRLRFQFSPTKEA 133 (135)
Q Consensus 107 ~a~~~~~~-----l~~~gG~~~~~~~~~~~~~ 133 (135)
++..++.. +.+ .||+.++.|.||+++
T Consensus 79 ~~~~~~~~~~~~~l~~-~g~~~v~~l~GG~~~ 109 (113)
T PF00581_consen 79 RSGSAAAARVAWILKK-LGFKNVYILDGGFEA 109 (113)
T ss_dssp HHHHHHHHHHHHHHHH-TTTSSEEEETTHHHH
T ss_pred ccchhHHHHHHHHHHH-cCCCCEEEecChHHH
Confidence 87777766 444 699999999999875
No 31
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.71 E-value=6.2e-17 Score=127.31 Aligned_cols=92 Identities=24% Similarity=0.309 Sum_probs=78.2
Q ss_pred cceeCHHHHHHHhhCCCeEEecCChHHHhcCCCCCCceeCeeccccCCCCCCCChHHHHHHHhh-ccCCCcEEEEcCCCc
Q 032698 28 VITVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL-CKEEDRLVVGCQSGA 106 (135)
Q Consensus 28 ~~~is~~el~~~l~~~~~iIDvR~~~e~~~ghIpgA~~~nip~~~~~~~~~~~~~~~~~~~~~~-~~~~~~vvlyC~~G~ 106 (135)
.+.++++|+.++++++.+|||+|+++||..|||||| +|+|.. ++...+... .+++++||+||++|.
T Consensus 2 v~~is~~el~~~l~~~~~ivDvR~~~e~~~ghIpgA--i~ip~~-----------~l~~~~~~~~~~~~~~IvvyC~~G~ 68 (376)
T PRK08762 2 IREISPAEARARAAQGAVLIDVREAHERASGQAEGA--LRIPRG-----------FLELRIETHLPDRDREIVLICASGT 68 (376)
T ss_pred CceeCHHHHHHHHhCCCEEEECCCHHHHhCCcCCCC--EECCHH-----------HHHHHHhhhcCCCCCeEEEEcCCCc
Confidence 467999999999988889999999999999999999 999984 555555554 478999999999999
Q ss_pred chHHHHHHHHHhCCCceEeecCCCccc
Q 032698 107 RSLHATADLLGAVSFRLRFQFSPTKEA 133 (135)
Q Consensus 107 ~a~~~~~~l~~~gG~~~~~~~~~~~~~ 133 (135)
++..+++.|.+ .||++++.|.||+.+
T Consensus 69 rs~~aa~~L~~-~G~~~v~~l~GG~~~ 94 (376)
T PRK08762 69 RSAHAAATLRE-LGYTRVASVAGGFSA 94 (376)
T ss_pred HHHHHHHHHHH-cCCCceEeecCcHHH
Confidence 99988876655 599989999998754
No 32
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=99.70 E-value=4.4e-17 Score=107.90 Aligned_cols=90 Identities=20% Similarity=0.349 Sum_probs=70.0
Q ss_pred ceeCHHHHHHHhhCC---CeEEecCChHHHhcCCCCCCceeCeeccccCCCCCCCChHHHHHHHh----h-ccCCCcEEE
Q 032698 29 ITVDVRAAKNLLESG---YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRS----L-CKEEDRLVV 100 (135)
Q Consensus 29 ~~is~~el~~~l~~~---~~iIDvR~~~e~~~ghIpgA~~~nip~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~vvl 100 (135)
+.|+++|+.+++..+ .+|||||++ ||..|||||| +|+|.. ++...+.+ . .+++++||+
T Consensus 2 ~~is~~~l~~~~~~~~~~~~iiDvR~~-e~~~~hi~gA--~~ip~~-----------~l~~~~~~~~~~~~~~~~~~iv~ 67 (113)
T cd01531 2 SYISPAQLKGWIRNGRPPFQVVDVRDE-DYAGGHIKGS--WHYPST-----------RFKAQLNQLVQLLSGSKKDTVVF 67 (113)
T ss_pred CcCCHHHHHHHHHcCCCCEEEEEcCCc-ccCCCcCCCC--EecCHH-----------HHhhCHHHHHHHHhcCCCCeEEE
Confidence 568999999998763 579999999 9999999999 999985 22222222 1 256789999
Q ss_pred EcC-CCcchHHHHHHHHHh-------CCCceEeecCCCcc
Q 032698 101 GCQ-SGARSLHATADLLGA-------VSFRLRFQFSPTKE 132 (135)
Q Consensus 101 yC~-~G~~a~~~~~~l~~~-------gG~~~~~~~~~~~~ 132 (135)
||+ +|.++..++..+.+. .||++++.+.||-.
T Consensus 68 yC~~~~~r~~~aa~~l~~~~~~~~~~~G~~~v~~l~gG~~ 107 (113)
T cd01531 68 HCALSQVRGPSAARKFLRYLDEEDLETSKFEVYVLHGGFN 107 (113)
T ss_pred EeecCCcchHHHHHHHHHHHHHhccccCCCeEEEEcChHH
Confidence 998 778888888877542 38888999999854
No 33
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.70 E-value=8.6e-17 Score=122.01 Aligned_cols=104 Identities=15% Similarity=0.118 Sum_probs=80.7
Q ss_pred cceeCHHHHHHHhhC-CCeEEecCC----------hHHHhcCCCCCCceeCeeccccCC-C----CCCC-ChHHHHHHHh
Q 032698 28 VITVDVRAAKNLLES-GYGYLDVRT----------AEEFKEGHVDAAKIFNIPYMFNTP-E----GRVK-NPDFLKKVRS 90 (135)
Q Consensus 28 ~~~is~~el~~~l~~-~~~iIDvR~----------~~e~~~ghIpgA~~~nip~~~~~~-~----~~~~-~~~~~~~~~~ 90 (135)
...++++++.+.+++ +.+|||+|+ +++|.+|||||| +|+|+..... . ..+. ..++.+.+.+
T Consensus 4 ~~lvs~~~l~~~l~~~~~~iiD~R~~~~~~~~~~~~~~y~~GHIpGA--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (281)
T PRK11493 4 TWFVAADWLAEHIDDPEIQIIDARMAPPGQEDRDVAAEYRAGHIPGA--VFFDIEALSDHTSPLPHMMPRPETFAVAMRE 81 (281)
T ss_pred CcccCHHHHHHhcCCCCeEEEEeeCCCCCccccchHHHHHhCcCCCC--EEcCHHHhcCCCCCCCCCCCCHHHHHHHHHH
Confidence 356999999999987 478999996 788999999999 9988643221 1 1122 2467778888
Q ss_pred h-ccCCCcEEEEcCCCcchHHHHHHHHHhCCCceEeecCCCccc
Q 032698 91 L-CKEEDRLVVGCQSGARSLHATADLLGAVSFRLRFQFSPTKEA 133 (135)
Q Consensus 91 ~-~~~~~~vvlyC~~G~~a~~~~~~l~~~gG~~~~~~~~~~~~~ 133 (135)
+ ++++++||+||.++.+++..+.++++..||++++-|+||+.+
T Consensus 82 ~Gi~~d~~VVvyc~~~~~~a~~~~~~l~~~G~~~v~~l~GG~~~ 125 (281)
T PRK11493 82 LGVNQDKHLVVYDEGNLFSAPRAWWMLRTFGVEKVSILAGGLAG 125 (281)
T ss_pred cCCCCCCEEEEECCCCCchHHHHHHHHHHhcCCcEEEcCCCHHH
Confidence 7 899999999999877666555556677799999999999864
No 34
>PRK05320 rhodanese superfamily protein; Provisional
Probab=99.69 E-value=1.2e-16 Score=119.85 Aligned_cols=95 Identities=21% Similarity=0.234 Sum_probs=75.2
Q ss_pred CcceeCHHHHHHHhhCC-------CeEEecCChHHHhcCCCCCCceeCeeccccCCCCCCCChHHHHHHHhh--ccCCCc
Q 032698 27 EVITVDVRAAKNLLESG-------YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL--CKEEDR 97 (135)
Q Consensus 27 ~~~~is~~el~~~l~~~-------~~iIDvR~~~e~~~ghIpgA~~~nip~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 97 (135)
..+.++++++.++++++ .++||||++.||..|||||| +|+|... +. ++..++... ..++++
T Consensus 108 ~~~~is~~el~~~l~~~~~~~~~~~vlIDVR~~~E~~~Ghi~GA--iniPl~~------f~--~~~~~l~~~~~~~kdk~ 177 (257)
T PRK05320 108 RAPSVDAATLKRWLDQGHDDAGRPVVMLDTRNAFEVDVGTFDGA--LDYRIDK------FT--EFPEALAAHRADLAGKT 177 (257)
T ss_pred cCceeCHHHHHHHHhccccccCCCeEEEECCCHHHHccCccCCC--EeCChhH------hh--hhHHHHHhhhhhcCCCe
Confidence 35789999999988652 58999999999999999999 9999841 10 222223322 127899
Q ss_pred EEEEcCCCcchHHHHHHHHHhCCCceEeecCCCcc
Q 032698 98 LVVGCQSGARSLHATADLLGAVSFRLRFQFSPTKE 132 (135)
Q Consensus 98 vvlyC~~G~~a~~~~~~l~~~gG~~~~~~~~~~~~ 132 (135)
|++||.+|.|+..++.+|++. ||+++|+|.||-.
T Consensus 178 IvvyC~~G~Rs~~Aa~~L~~~-Gf~~V~~L~GGi~ 211 (257)
T PRK05320 178 VVSFCTGGIRCEKAAIHMQEV-GIDNVYQLEGGIL 211 (257)
T ss_pred EEEECCCCHHHHHHHHHHHHc-CCcceEEeccCHH
Confidence 999999999999999988765 9999999999854
No 35
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=99.69 E-value=9.9e-17 Score=102.69 Aligned_cols=80 Identities=18% Similarity=0.214 Sum_probs=60.0
Q ss_pred hhC-CCeEEecCChHHHhcCCCCCCceeCeeccccCCCCCCCChHHHH-HHHhhccCCCcEEEEcCCCcc--hHHHHHHH
Q 032698 40 LES-GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLK-KVRSLCKEEDRLVVGCQSGAR--SLHATADL 115 (135)
Q Consensus 40 l~~-~~~iIDvR~~~e~~~ghIpgA~~~nip~~~~~~~~~~~~~~~~~-~~~~~~~~~~~vvlyC~~G~~--a~~~~~~l 115 (135)
+++ +.++||+|+++||..+||||| +|+|.. ++.. ......+++++||+||.+|.+ +..+++.|
T Consensus 6 ~~~~~~~liDvR~~~e~~~~hi~ga--~~ip~~-----------~~~~~~~~~~~~~~~~ivl~c~~G~~~~s~~aa~~L 72 (92)
T cd01532 6 LAREEIALIDVREEDPFAQSHPLWA--ANLPLS-----------RLELDAWVRIPRRDTPIVVYGEGGGEDLAPRAARRL 72 (92)
T ss_pred hcCCCeEEEECCCHHHHhhCCcccC--eeCCHH-----------HHHhhhHhhCCCCCCeEEEEeCCCCchHHHHHHHHH
Confidence 443 478999999999999999999 999974 3322 222222458899999999876 46666655
Q ss_pred HHhCCCceEeecCCCccc
Q 032698 116 LGAVSFRLRFQFSPTKEA 133 (135)
Q Consensus 116 ~~~gG~~~~~~~~~~~~~ 133 (135)
+..||++++.+.||.++
T Consensus 73 -~~~G~~~v~~l~GG~~~ 89 (92)
T cd01532 73 -SELGYTDVALLEGGLQG 89 (92)
T ss_pred -HHcCccCEEEccCCHHH
Confidence 44699999999998653
No 36
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=99.69 E-value=1.4e-16 Score=100.01 Aligned_cols=83 Identities=33% Similarity=0.443 Sum_probs=66.2
Q ss_pred HHHhhC-CCeEEecCChHHHhcCCCCCCceeCeeccccCCCCCCCChHHHHHHHhh-ccCCCcEEEEcCCCcchHHHHHH
Q 032698 37 KNLLES-GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL-CKEEDRLVVGCQSGARSLHATAD 114 (135)
Q Consensus 37 ~~~l~~-~~~iIDvR~~~e~~~ghIpgA~~~nip~~~~~~~~~~~~~~~~~~~~~~-~~~~~~vvlyC~~G~~a~~~~~~ 114 (135)
.+.+++ +..|||+|++.+|..+||||| +++|.. .+....... .+++++||+||++|.++..++..
T Consensus 3 ~~~~~~~~~~iiD~R~~~~~~~~~i~ga--~~~~~~-----------~~~~~~~~~~~~~~~~vv~~c~~~~~a~~~~~~ 69 (89)
T cd00158 3 KELLDDEDAVLLDVREPEEYAAGHIPGA--INIPLS-----------ELEERAALLELDKDKPIVVYCRSGNRSARAAKL 69 (89)
T ss_pred HHHhcCCCeEEEECCCHHHHhccccCCC--EecchH-----------HHhhHHHhhccCCCCeEEEEeCCCchHHHHHHH
Confidence 344544 579999999999999999999 999984 333322122 48899999999999999999888
Q ss_pred HHHhCCCceEeecCCCccc
Q 032698 115 LLGAVSFRLRFQFSPTKEA 133 (135)
Q Consensus 115 l~~~gG~~~~~~~~~~~~~ 133 (135)
|.+. ||+.++.|.||.++
T Consensus 70 l~~~-G~~~v~~l~gG~~~ 87 (89)
T cd00158 70 LRKA-GGTNVYNLEGGMLA 87 (89)
T ss_pred HHHh-CcccEEEecCChhh
Confidence 8765 78889999999875
No 37
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=99.68 E-value=1.8e-16 Score=100.87 Aligned_cols=88 Identities=27% Similarity=0.383 Sum_probs=66.7
Q ss_pred CCeEEecCChHHHhcCCCCCCceeCeeccccCCCC-CCCChHHHHHHHhh-ccCCCcEEEEcCCCcchHHHHHHHHHhCC
Q 032698 43 GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEG-RVKNPDFLKKVRSL-CKEEDRLVVGCQSGARSLHATADLLGAVS 120 (135)
Q Consensus 43 ~~~iIDvR~~~e~~~ghIpgA~~~nip~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~vvlyC~~G~~a~~~~~~l~~~gG 120 (135)
+.+|||+|++.||..+||||| +|+|........ ......+....... .+++++||+||.+|.++..++..|.+ .|
T Consensus 4 ~~~ivDvR~~~e~~~~hi~ga--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~~a~~~~~~l~~-~G 80 (100)
T smart00450 4 KVVLLDVRSPEEYEGGHIPGA--VNIPLSELLDRRGELDILEFEELLKRLGLDKDKPVVVYCRSGNRSAKAAWLLRE-LG 80 (100)
T ss_pred CEEEEECCCHHHhccCCCCCc--eeCCHHHhccCCCCcCHHHHHHHHHHcCCCCCCeEEEEeCCCcHHHHHHHHHHH-cC
Confidence 468999999999999999999 999985432211 11111333444444 67899999999999999888887765 59
Q ss_pred CceEeecCCCccc
Q 032698 121 FRLRFQFSPTKEA 133 (135)
Q Consensus 121 ~~~~~~~~~~~~~ 133 (135)
|++++.|.||+++
T Consensus 81 ~~~v~~l~GG~~~ 93 (100)
T smart00450 81 FKNVYLLDGGYKE 93 (100)
T ss_pred CCceEEecCCHHH
Confidence 9999999999865
No 38
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=99.66 E-value=3.1e-16 Score=108.55 Aligned_cols=83 Identities=20% Similarity=0.317 Sum_probs=68.4
Q ss_pred HHHHhhCC--CeEEecCChHHHhcCCCCCCceeCeeccccCCCCCCCChHHHHHHHhhccCCCcEEEEcCCCcchHHHHH
Q 032698 36 AKNLLESG--YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSGARSLHATA 113 (135)
Q Consensus 36 l~~~l~~~--~~iIDvR~~~e~~~ghIpgA~~~nip~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvlyC~~G~~a~~~~~ 113 (135)
+.+++.++ .+|||+|++.+|..|||||| +++|.. ++...+..+ +++++||+||.+|.++..+++
T Consensus 2 l~~~l~~~~~~~ivDvR~~~e~~~gHIpgA--i~~~~~-----------~l~~~l~~l-~~~~~vVv~c~~g~~a~~aa~ 67 (145)
T cd01535 2 LAAWLGEGGQTAVVDVTASANYVKRHIPGA--WWVLRA-----------QLAQALEKL-PAAERYVLTCGSSLLARFAAA 67 (145)
T ss_pred hHHHHhCCCCeEEEECCCHHHHHcCCCCCc--eeCCHH-----------HHHHHHHhc-CCCCCEEEEeCCChHHHHHHH
Confidence 45566554 58999999999999999999 888864 666666665 778999999999998988888
Q ss_pred HHHHhCCCceEeecCCCccc
Q 032698 114 DLLGAVSFRLRFQFSPTKEA 133 (135)
Q Consensus 114 ~l~~~gG~~~~~~~~~~~~~ 133 (135)
.|... ||+.++.|.||+++
T Consensus 68 ~L~~~-G~~~v~~L~GG~~a 86 (145)
T cd01535 68 DLAAL-TVKPVFVLEGGTAA 86 (145)
T ss_pred HHHHc-CCcCeEEecCcHHH
Confidence 77665 78889999998754
No 39
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.66 E-value=5e-16 Score=119.87 Aligned_cols=104 Identities=15% Similarity=0.088 Sum_probs=81.1
Q ss_pred cceeCHHHHHHHhhC-CCeEEecC--------C-hHHHhcCCCCCCceeCeeccccCCC-----CCCC-ChHHHHHHHhh
Q 032698 28 VITVDVRAAKNLLES-GYGYLDVR--------T-AEEFKEGHVDAAKIFNIPYMFNTPE-----GRVK-NPDFLKKVRSL 91 (135)
Q Consensus 28 ~~~is~~el~~~l~~-~~~iIDvR--------~-~~e~~~ghIpgA~~~nip~~~~~~~-----~~~~-~~~~~~~~~~~ 91 (135)
...|+++++.+.+++ +.+|||+| + .++|.+|||||| +++|+...... ..++ ..+|.+.+.++
T Consensus 21 ~~lvs~~~L~~~l~~~~~~IiDvr~~~~~~~r~~~~~y~~gHIPgA--i~i~~~~~~~~~~~~~~~lp~~~~~~~~l~~~ 98 (320)
T PLN02723 21 EPVVSVDWLHANLREPDVKVLDASWYMPDEQRNPIQEYQVAHIPGA--LFFDLDGISDRTTDLPHMLPSEEAFAAAVSAL 98 (320)
T ss_pred CceecHHHHHHHhcCCCeEEEEeeccccCCCCchHHHHHhccCCCC--eecCHHHhcCCCCCcCCCCCCHHHHHHHHHHc
Confidence 357999999999986 57899996 3 378999999999 88876432111 1122 24677888888
Q ss_pred -ccCCCcEEEEcCCCcchHHHHHHHHHhCCCceEeecCCCccc
Q 032698 92 -CKEEDRLVVGCQSGARSLHATADLLGAVSFRLRFQFSPTKEA 133 (135)
Q Consensus 92 -~~~~~~vvlyC~~G~~a~~~~~~l~~~gG~~~~~~~~~~~~~ 133 (135)
++++++||+||++|..++..+.|+++..||++++.|+||+++
T Consensus 99 Gi~~~~~VVvY~~~g~~~a~r~~~~L~~~G~~~V~~LdGG~~~ 141 (320)
T PLN02723 99 GIENKDGVVVYDGKGIFSAARVWWMFRVFGHEKVWVLDGGLPK 141 (320)
T ss_pred CCCCCCEEEEEcCCCcchHHHHHHHHHHcCCCceEEcCCCHHH
Confidence 789999999999888777677777788899999999999754
No 40
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.66 E-value=4.4e-16 Score=128.81 Aligned_cols=103 Identities=14% Similarity=0.116 Sum_probs=81.8
Q ss_pred ceeCHHHHHHHhhC-CCeEEecCChHHHhcCCCCCCceeCeecccc--C---CCCCCCC-hHHHHHHHhh-ccCCCcEEE
Q 032698 29 ITVDVRAAKNLLES-GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFN--T---PEGRVKN-PDFLKKVRSL-CKEEDRLVV 100 (135)
Q Consensus 29 ~~is~~el~~~l~~-~~~iIDvR~~~e~~~ghIpgA~~~nip~~~~--~---~~~~~~~-~~~~~~~~~~-~~~~~~vvl 100 (135)
..|+++|+.+++++ +.+|||+|++++|.+|||||| +|+|+... . ....+++ .++...+.++ ++++++||+
T Consensus 9 ~lIs~~eL~~~l~~~~vvIIDvR~~~eY~~GHIPGA--v~i~~~~~~~~~~~~~~~lp~~~~l~~~l~~lGI~~d~~VVv 86 (610)
T PRK09629 9 LVIEPNDLLERLDAPELILVDLTSSARYEAGHIRGA--RFVDPKRTQLGKPPAPGLLPDTADLEQLFGELGHNPDAVYVV 86 (610)
T ss_pred ceecHHHHHHHhcCCCEEEEECCChHHHHhCCCCCc--EEcChhHhhccCCCCCCCCCCHHHHHHHHHHcCCCCCCEEEE
Confidence 56999999999987 578999999999999999999 88886421 1 1122332 4788888888 889999999
Q ss_pred EcCCCcchHHHHHHHHHhCCCceEeecCCCccc
Q 032698 101 GCQSGARSLHATADLLGAVSFRLRFQFSPTKEA 133 (135)
Q Consensus 101 yC~~G~~a~~~~~~l~~~gG~~~~~~~~~~~~~ 133 (135)
||++|...+..++|+++..||+.++.|+||++|
T Consensus 87 Yd~~g~~~A~R~~w~L~~~G~~~V~iLdGG~~a 119 (610)
T PRK09629 87 YDDEGGGWAGRFIWLLDVIGHSGYHYLDGGVLA 119 (610)
T ss_pred ECCCCCchHHHHHHHHHHcCCCCEEEcCCCHHH
Confidence 999876555555666677899999999999764
No 41
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=99.65 E-value=5.7e-16 Score=122.47 Aligned_cols=93 Identities=29% Similarity=0.371 Sum_probs=76.8
Q ss_pred CCcceeCHHHHHHHhhCC--CeEEecCChHHHhcCCCCCCceeCeeccccCCCCCCCChHHHH--HHHhhccCCCcEEEE
Q 032698 26 AEVITVDVRAAKNLLESG--YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLK--KVRSLCKEEDRLVVG 101 (135)
Q Consensus 26 ~~~~~is~~el~~~l~~~--~~iIDvR~~~e~~~ghIpgA~~~nip~~~~~~~~~~~~~~~~~--~~~~~~~~~~~vvly 101 (135)
...+.++++|+.++++++ .++||+|+++||..+||||| +|+|+. ++.. .+.. ++++++||+|
T Consensus 284 ~~~~~Is~~el~~~l~~~~~~~lIDvR~~~ef~~ghIpGA--inip~~-----------~l~~~~~~~~-l~~d~~iVvy 349 (392)
T PRK07878 284 AAGSTITPRELKEWLDSGKKIALIDVREPVEWDIVHIPGA--QLIPKS-----------EILSGEALAK-LPQDRTIVLY 349 (392)
T ss_pred CCCCccCHHHHHHHHhCCCCeEEEECCCHHHHhcCCCCCC--EEcChH-----------HhcchhHHhh-CCCCCcEEEE
Confidence 345779999999999764 58999999999999999999 999984 2221 2333 4889999999
Q ss_pred cCCCcchHHHHHHHHHhCCCceEeecCCCccc
Q 032698 102 CQSGARSLHATADLLGAVSFRLRFQFSPTKEA 133 (135)
Q Consensus 102 C~~G~~a~~~~~~l~~~gG~~~~~~~~~~~~~ 133 (135)
|++|.++..++..|.+. ||++++.+.||+++
T Consensus 350 C~~G~rS~~aa~~L~~~-G~~~V~~L~GG~~~ 380 (392)
T PRK07878 350 CKTGVRSAEALAALKKA-GFSDAVHLQGGVVA 380 (392)
T ss_pred cCCChHHHHHHHHHHHc-CCCcEEEecCcHHH
Confidence 99999999998887665 89888999999764
No 42
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.64 E-value=6.8e-16 Score=119.12 Aligned_cols=99 Identities=14% Similarity=0.236 Sum_probs=78.6
Q ss_pred eCHHHHHHHhhC-CCeEEecCChHHH-----------hcCCCCCCceeCeecccc-CCCCCCCC-hHHHHHHHhh-ccCC
Q 032698 31 VDVRAAKNLLES-GYGYLDVRTAEEF-----------KEGHVDAAKIFNIPYMFN-TPEGRVKN-PDFLKKVRSL-CKEE 95 (135)
Q Consensus 31 is~~el~~~l~~-~~~iIDvR~~~e~-----------~~ghIpgA~~~nip~~~~-~~~~~~~~-~~~~~~~~~~-~~~~ 95 (135)
++.+++.+.+++ +.+|||+|+++|| ..|||||| +|+|+... .....+.+ +++.+.+.+. ++++
T Consensus 192 ~~~~~v~~~~~~~~~~iiD~R~~~ef~G~~~~~~~~~~~GHIPgA--vnip~~~~~~~~~~~~~~~el~~~~~~~gi~~~ 269 (320)
T PLN02723 192 WTLEQVKKNIEDKTYQHIDARSKARFDGAAPEPRKGIRSGHIPGS--KCVPFPQMLDSSQTLLPAEELKKRFEQEGISLD 269 (320)
T ss_pred ecHHHHHHhhcCCCeEEEECCCcccccCCCCCCCCCCcCCcCCCC--cccCHHHhcCCCCCCCCHHHHHHHHHhcCCCCC
Confidence 688999988876 4789999999998 46999999 99998532 22233433 4677777766 7899
Q ss_pred CcEEEEcCCCcchHHHHHHHHHhCCCceEeecCCCcc
Q 032698 96 DRLVVGCQSGARSLHATADLLGAVSFRLRFQFSPTKE 132 (135)
Q Consensus 96 ~~vvlyC~~G~~a~~~~~~l~~~gG~~~~~~~~~~~~ 132 (135)
++||+||++|.+++..+..| +..||++++-|+|+|.
T Consensus 270 ~~iv~yC~sG~~A~~~~~~L-~~~G~~~v~~YdGs~~ 305 (320)
T PLN02723 270 SPIVASCGTGVTACILALGL-HRLGKTDVPVYDGSWT 305 (320)
T ss_pred CCEEEECCcHHHHHHHHHHH-HHcCCCCeeEeCCCHH
Confidence 99999999999988877766 4679999999999985
No 43
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.64 E-value=1.5e-15 Score=115.01 Aligned_cols=101 Identities=23% Similarity=0.318 Sum_probs=81.6
Q ss_pred ceeCHHHHHHHhhC-CCeEEecCChHHHhc----------CCCCCCceeCeeccccCC-CCCCCChHHHHHHH-hh-ccC
Q 032698 29 ITVDVRAAKNLLES-GYGYLDVRTAEEFKE----------GHVDAAKIFNIPYMFNTP-EGRVKNPDFLKKVR-SL-CKE 94 (135)
Q Consensus 29 ~~is~~el~~~l~~-~~~iIDvR~~~e~~~----------ghIpgA~~~nip~~~~~~-~~~~~~~~~~~~~~-~~-~~~ 94 (135)
..++.++++...+. +.+|||+|++++|.. |||||| +|+|+..... ...++.++..+.+- .. +++
T Consensus 156 ~~~~~~~~~~~~~~~~~~liDaR~~~rf~G~~~ep~~~~~GHIPGA--iNipw~~~~~~~~~~~~~~~~~~l~~~~gi~~ 233 (285)
T COG2897 156 AVVDATLVADALEVPAVLLIDARSPERFRGKEPEPRDGKAGHIPGA--INIPWTDLVDDGGLFKSPEEIARLYADAGIDP 233 (285)
T ss_pred ccCCHHHHHHHhcCCCeEEEecCCHHHhCCCCCCCCCCCCCCCCCC--cCcCHHHHhcCCCccCcHHHHHHHHHhcCCCC
Confidence 45677888888777 468999999999987 999999 9999976543 34556666666555 33 799
Q ss_pred CCcEEEEcCCCcchHHHHHHHHHhCCCceEeecCCCcc
Q 032698 95 EDRLVVGCQSGARSLHATADLLGAVSFRLRFQFSPTKE 132 (135)
Q Consensus 95 ~~~vvlyC~~G~~a~~~~~~l~~~gG~~~~~~~~~~~~ 132 (135)
+++||+||.+|.+++.....|...||+.+ .-|+|.|-
T Consensus 234 ~~~vI~yCgsG~~As~~~~al~~lg~~~~-~lYdGSWs 270 (285)
T COG2897 234 DKEVIVYCGSGVRASVTWLALAELGGPNN-RLYDGSWS 270 (285)
T ss_pred CCCEEEEcCCchHHHHHHHHHHHhCCCCc-ccccChHH
Confidence 99999999999999999988888877777 88999873
No 44
>PRK07411 hypothetical protein; Validated
Probab=99.62 E-value=1.4e-15 Score=120.12 Aligned_cols=97 Identities=27% Similarity=0.343 Sum_probs=75.2
Q ss_pred CCcceeCHHHHHHHhhCC---CeEEecCChHHHhcCCCCCCceeCeeccccCCCCCCCChHHHHHHHhhccCCCcEEEEc
Q 032698 26 AEVITVDVRAAKNLLESG---YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGC 102 (135)
Q Consensus 26 ~~~~~is~~el~~~l~~~---~~iIDvR~~~e~~~ghIpgA~~~nip~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvlyC 102 (135)
.....++++|+.++++++ .++||+|+++||..|||||| +|+|+...... ...+.+.++ +++++||+||
T Consensus 279 ~~~~~Is~~el~~~l~~~~~~~vlIDVR~~~E~~~ghIpGA--iniP~~~l~~~------~~~~~l~~l-~~d~~IVvyC 349 (390)
T PRK07411 279 AEIPEMTVTELKALLDSGADDFVLIDVRNPNEYEIARIPGS--VLVPLPDIENG------PGVEKVKEL-LNGHRLIAHC 349 (390)
T ss_pred cccCccCHHHHHHHHhCCCCCeEEEECCCHHHhccCcCCCC--EEccHHHhhcc------cchHHHhhc-CCCCeEEEEC
Confidence 345779999999998753 58999999999999999999 99998521110 011233333 6889999999
Q ss_pred CCCcchHHHHHHHHHhCCCceEeecCCCccc
Q 032698 103 QSGARSLHATADLLGAVSFRLRFQFSPTKEA 133 (135)
Q Consensus 103 ~~G~~a~~~~~~l~~~gG~~~~~~~~~~~~~ 133 (135)
.+|.||..+++.|.+. ||++ +.+.||+.+
T Consensus 350 ~~G~RS~~aa~~L~~~-G~~~-~~l~GG~~~ 378 (390)
T PRK07411 350 KMGGRSAKALGILKEA-GIEG-TNVKGGITA 378 (390)
T ss_pred CCCHHHHHHHHHHHHc-CCCe-EEecchHHH
Confidence 9999999999888765 8885 679998754
No 45
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.60 E-value=3e-15 Score=97.77 Aligned_cols=77 Identities=35% Similarity=0.495 Sum_probs=62.2
Q ss_pred CCeEEecCChHHHhcCCCCC-CceeCeeccccCCCCCCCChHHHHHHHhh-ccCCCcEEEEcCCCcchHHHHHHHHHhCC
Q 032698 43 GYGYLDVRTAEEFKEGHVDA-AKIFNIPYMFNTPEGRVKNPDFLKKVRSL-CKEEDRLVVGCQSGARSLHATADLLGAVS 120 (135)
Q Consensus 43 ~~~iIDvR~~~e~~~ghIpg-A~~~nip~~~~~~~~~~~~~~~~~~~~~~-~~~~~~vvlyC~~G~~a~~~~~~l~~~gG 120 (135)
+.++||||++.||..+|||| + .|+|.. ++....... .++++++|+||++|.++..++..|.+. |
T Consensus 20 ~~~liDvR~~~e~~~~~i~~~~--~~ip~~-----------~~~~~~~~~~~~~~~~ivv~C~~G~rS~~aa~~L~~~-G 85 (110)
T COG0607 20 DAVLLDVREPEEYERGHIPGAA--INIPLS-----------ELKAAENLLELPDDDPIVVYCASGVRSAAAAAALKLA-G 85 (110)
T ss_pred CCEEEeccChhHhhhcCCCcce--eeeecc-----------cchhhhcccccCCCCeEEEEeCCCCChHHHHHHHHHc-C
Confidence 57999999999999999999 8 999985 222222221 378999999999999999999988887 6
Q ss_pred CceEeecCCCccc
Q 032698 121 FRLRFQFSPTKEA 133 (135)
Q Consensus 121 ~~~~~~~~~~~~~ 133 (135)
|++++.+.||-.+
T Consensus 86 ~~~~~~l~gG~~~ 98 (110)
T COG0607 86 FTNVYNLDGGIDA 98 (110)
T ss_pred CccccccCCcHHH
Confidence 8777888887543
No 46
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.60 E-value=3.3e-15 Score=113.38 Aligned_cols=99 Identities=17% Similarity=0.234 Sum_probs=76.1
Q ss_pred eCHHHHHHHhhC-CCeEEecCChHHHh-----------cCCCCCCceeCeeccccCCCCCCCC-hHHHHHHHhh-ccCCC
Q 032698 31 VDVRAAKNLLES-GYGYLDVRTAEEFK-----------EGHVDAAKIFNIPYMFNTPEGRVKN-PDFLKKVRSL-CKEED 96 (135)
Q Consensus 31 is~~el~~~l~~-~~~iIDvR~~~e~~-----------~ghIpgA~~~nip~~~~~~~~~~~~-~~~~~~~~~~-~~~~~ 96 (135)
.+.+++...+++ +.+|||+|+++||. .|||||| +|+|+........+.+ +++...+.+. +++++
T Consensus 155 ~~~~~v~~~~~~~~~~llD~R~~~e~~G~~~~~~~~~~~GhIpgA--~~i~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 232 (281)
T PRK11493 155 VRLTDVLLASHEKTAQIVDARPAARFNAEVDEPRPGLRRGHIPGA--LNVPWTELVREGELKTTDELDAIFFGRGVSFDR 232 (281)
T ss_pred ecHHHHHHhhcCCCcEEEeCCCccceeeeccCCCCCcccccCCCc--CCCCHHHhcCCCCcCCHHHHHHHHHhcCCCCCC
Confidence 455666656655 46899999999995 6999999 9999865433333433 4566666665 78899
Q ss_pred cEEEEcCCCcchHHHHHHHHHhCCCceEeecCCCcc
Q 032698 97 RLVVGCQSGARSLHATADLLGAVSFRLRFQFSPTKE 132 (135)
Q Consensus 97 ~vvlyC~~G~~a~~~~~~l~~~gG~~~~~~~~~~~~ 132 (135)
+||+||++|.+++.++..|. ..||++++.|+|+|.
T Consensus 233 ~ii~yC~~G~~A~~~~~~l~-~~G~~~v~~y~Gs~~ 267 (281)
T PRK11493 233 PIIASCGSGVTAAVVVLALA-TLDVPNVKLYDGAWS 267 (281)
T ss_pred CEEEECCcHHHHHHHHHHHH-HcCCCCceeeCCCHH
Confidence 99999999999998877664 669999999999985
No 47
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=99.60 E-value=3.5e-15 Score=116.10 Aligned_cols=99 Identities=21% Similarity=0.274 Sum_probs=73.2
Q ss_pred eCHHHHHHHhhCCCeEEecCChHHHhcCCCCCCceeCeeccccCCCC-------------------CCCChHHHHHHHhh
Q 032698 31 VDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEG-------------------RVKNPDFLKKVRSL 91 (135)
Q Consensus 31 is~~el~~~l~~~~~iIDvR~~~e~~~ghIpgA~~~nip~~~~~~~~-------------------~~~~~~~~~~~~~~ 91 (135)
.+..++.+.+.++.+|||||++.||.+|||||| +|+|+..+.+.. .+..+++...+.+.
T Consensus 3 ~~~~~~~~~~~~~~~lIDVRsp~Ef~~ghIpgA--iniPl~~~~er~~vgt~Ykq~g~~~a~~lg~~lv~~~l~~~~~~~ 80 (345)
T PRK11784 3 PDAQDFRALFLNDTPLIDVRSPIEFAEGHIPGA--INLPLLNDEERAEVGTCYKQQGQFAAIALGHALVAGNIAAHREEA 80 (345)
T ss_pred CcHHHHHHHHhCCCEEEECCCHHHHhcCCCCCe--eeCCCCChhHHHhhchhhcccCHHHHHHhhhhhcchhHHHHHHHH
Confidence 457788888777889999999999999999999 999995432100 12223444443332
Q ss_pred ---c-cCCCcEEEEcC-CCcchHHHHHHHHHhCCCceEeecCCCccc
Q 032698 92 ---C-KEEDRLVVGCQ-SGARSLHATADLLGAVSFRLRFQFSPTKEA 133 (135)
Q Consensus 92 ---~-~~~~~vvlyC~-~G~~a~~~~~~l~~~gG~~~~~~~~~~~~~ 133 (135)
. +++++||+||. +|.+|..++++|... ||+ ++.+.||+.+
T Consensus 81 ~~~~~~~~~~ivvyC~rgG~RS~~aa~~L~~~-G~~-v~~L~GG~~a 125 (345)
T PRK11784 81 WADFPRANPRGLLYCWRGGLRSGSVQQWLKEA-GID-VPRLEGGYKA 125 (345)
T ss_pred HHhcccCCCeEEEEECCCChHHHHHHHHHHHc-CCC-cEEEcCCHHH
Confidence 2 37889999995 788999988878765 886 6899999765
No 48
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.59 E-value=3.3e-15 Score=123.64 Aligned_cols=101 Identities=17% Similarity=0.248 Sum_probs=79.6
Q ss_pred eeCHHHHHHHhhC-CCeEEecCChHHHh--------cCCCCCCceeCeecccc-CCCCCCCC-hHHHHHHHhh-ccCCCc
Q 032698 30 TVDVRAAKNLLES-GYGYLDVRTAEEFK--------EGHVDAAKIFNIPYMFN-TPEGRVKN-PDFLKKVRSL-CKEEDR 97 (135)
Q Consensus 30 ~is~~el~~~l~~-~~~iIDvR~~~e~~--------~ghIpgA~~~nip~~~~-~~~~~~~~-~~~~~~~~~~-~~~~~~ 97 (135)
.++.+++.+.+++ +.+|||+|+++||. .|||||| +|+|+... .....+.+ +++.+.+.++ ++++++
T Consensus 148 ~v~~e~v~~~l~~~~~~iIDaR~~~ef~G~~~~~~r~GHIPGA--vnip~~~~~~~~~~lk~~~el~~~~~~~Gi~~~~~ 225 (610)
T PRK09629 148 TATREYLQSRLGAADLAIWDARAPTEYSGEKVVAAKGGHIPGA--VNFEWTAGMDKARNLRIRQDMPEILRDLGITPDKE 225 (610)
T ss_pred cccHHHHHHhhCCCCcEEEECCCccccCCcccccccCCCCCCC--eecCHHHhcCCCCCCCCHHHHHHHHHHcCCCCCCC
Confidence 5788999998876 47899999999994 6999999 99997532 22233433 3566777776 789999
Q ss_pred EEEEcCCCcchHHHHHHHHHhCCCceEeecCCCccc
Q 032698 98 LVVGCQSGARSLHATADLLGAVSFRLRFQFSPTKEA 133 (135)
Q Consensus 98 vvlyC~~G~~a~~~~~~l~~~gG~~~~~~~~~~~~~ 133 (135)
||+||++|.+++.++..| +..||++++.|+|+|.+
T Consensus 226 VVvYC~sG~rAa~~~~~L-~~lG~~~V~~YdGsw~e 260 (610)
T PRK09629 226 VITHCQTHHRSGFTYLVA-KALGYPRVKAYAGSWGE 260 (610)
T ss_pred EEEECCCChHHHHHHHHH-HHcCCCCcEEeCCCHHH
Confidence 999999999888776544 67799999999999864
No 49
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.59 E-value=3.5e-15 Score=116.67 Aligned_cols=93 Identities=26% Similarity=0.294 Sum_probs=73.5
Q ss_pred CCcceeCHHHHHHHhhCCCeEEecCChHHHhcCCCCCCceeCeeccccCCCCCCCChHHHHHHHhh-ccCCCcEEEEcCC
Q 032698 26 AEVITVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL-CKEEDRLVVGCQS 104 (135)
Q Consensus 26 ~~~~~is~~el~~~l~~~~~iIDvR~~~e~~~ghIpgA~~~nip~~~~~~~~~~~~~~~~~~~~~~-~~~~~~vvlyC~~ 104 (135)
+....++++++.+. .++.+|||+|+++||..+||||| +|+|+. ++....... ++++++||+||++
T Consensus 258 ~~~~~i~~~~~~~~-~~~~~IIDVR~~~ef~~ghIpgA--inip~~-----------~l~~~~~~~~~~~~~~IvvyC~~ 323 (355)
T PRK05597 258 GFGEVLDVPRVSAL-PDGVTLIDVREPSEFAAYSIPGA--HNVPLS-----------AIREGANPPSVSAGDEVVVYCAA 323 (355)
T ss_pred CcccccCHHHHHhc-cCCCEEEECCCHHHHccCcCCCC--EEeCHH-----------HhhhccccccCCCCCeEEEEcCC
Confidence 33456888888854 34578999999999999999999 999985 333322222 4788999999999
Q ss_pred CcchHHHHHHHHHhCCCceEeecCCCccc
Q 032698 105 GARSLHATADLLGAVSFRLRFQFSPTKEA 133 (135)
Q Consensus 105 G~~a~~~~~~l~~~gG~~~~~~~~~~~~~ 133 (135)
|.++..+++.|.+. ||++++.+.||.++
T Consensus 324 G~rS~~Aa~~L~~~-G~~nV~~L~GGi~~ 351 (355)
T PRK05597 324 GVRSAQAVAILERA-GYTGMSSLDGGIEG 351 (355)
T ss_pred CHHHHHHHHHHHHc-CCCCEEEecCcHHH
Confidence 99999998877665 99988999998765
No 50
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=99.58 E-value=4.9e-15 Score=116.36 Aligned_cols=90 Identities=21% Similarity=0.265 Sum_probs=71.6
Q ss_pred ceeCHHHHHHHhhCC-CeEEecCChHHHhcCCCC---CCceeCeeccccCCCCCCCChHHHHH---HHhh--ccCCCcEE
Q 032698 29 ITVDVRAAKNLLESG-YGYLDVRTAEEFKEGHVD---AAKIFNIPYMFNTPEGRVKNPDFLKK---VRSL--CKEEDRLV 99 (135)
Q Consensus 29 ~~is~~el~~~l~~~-~~iIDvR~~~e~~~ghIp---gA~~~nip~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~vv 99 (135)
..++++|+.++++++ .++||||+++||..|||| || +|+|.. ++.+. ...+ ++++ +||
T Consensus 271 ~~~~~~el~~~l~~~~~~lIDVR~~~E~~~ghI~~~~gA--inIPl~-----------~l~~~~~~~~~l~~~~~~-~Iv 336 (370)
T PRK05600 271 ARTDTTSLIDATLNGSATLLDVREPHEVLLKDLPEGGAS--LKLPLS-----------AITDDADILHALSPIDGD-NVV 336 (370)
T ss_pred cccCHHHHHHHHhcCCeEEEECCCHHHhhhccCCCCCcc--EeCcHH-----------HhhcchhhhhhccccCCC-cEE
Confidence 357999999999874 689999999999999998 58 999985 33211 1222 2444 899
Q ss_pred EEcCCCcchHHHHHHHHHhCCCce-EeecCCCccc
Q 032698 100 VGCQSGARSLHATADLLGAVSFRL-RFQFSPTKEA 133 (135)
Q Consensus 100 lyC~~G~~a~~~~~~l~~~gG~~~-~~~~~~~~~~ 133 (135)
+||.+|.||..++..|.+. ||++ +|.+.||..+
T Consensus 337 v~C~sG~RS~~Aa~~L~~~-G~~~~v~~l~GG~~~ 370 (370)
T PRK05600 337 VYCASGIRSADFIEKYSHL-GHELTLHNLPGGVNA 370 (370)
T ss_pred EECCCChhHHHHHHHHHHc-CCCCceEEeccccCC
Confidence 9999999999999988775 8885 8999998653
No 51
>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase. This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.
Probab=99.54 E-value=2.8e-14 Score=96.84 Aligned_cols=100 Identities=20% Similarity=0.126 Sum_probs=69.6
Q ss_pred eeCHHHHHHHhhC---CCeEEecCChHHHhcCCCCCCceeCeeccccC--CC--------CCCCChHHHHHHHhhccCCC
Q 032698 30 TVDVRAAKNLLES---GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNT--PE--------GRVKNPDFLKKVRSLCKEED 96 (135)
Q Consensus 30 ~is~~el~~~l~~---~~~iIDvR~~~e~~~ghIpgA~~~nip~~~~~--~~--------~~~~~~~~~~~~~~~~~~~~ 96 (135)
.|+++|+.+.+++ +.+|||+|++.+|..+||||| +|+|..... .. ..+..++....+.. .+++
T Consensus 1 ~is~~~l~~~l~~~~~~~~iiDvR~~~~~~~~hI~~a--i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~ 76 (132)
T cd01446 1 TIDCAWLAALLREGGERLLLLDCRPFLEYSSSHIRGA--VNVCCPTILRRRLQGGKILLQQLLSCPEDRDRLRR--GESL 76 (132)
T ss_pred CcCHHHHHHHHhcCCCCEEEEECCCHHHHhhCcccCc--EecChHHHHHHhhcccchhhhhhcCCHHHHHHHhc--CCCC
Confidence 3799999999975 368999999999999999999 888875211 00 01222222223323 2678
Q ss_pred cEEEEcCCCcc---------hHHHHHHHHHh-CCCceEeecCCCccc
Q 032698 97 RLVVGCQSGAR---------SLHATADLLGA-VSFRLRFQFSPTKEA 133 (135)
Q Consensus 97 ~vvlyC~~G~~---------a~~~~~~l~~~-gG~~~~~~~~~~~~~ 133 (135)
+||+||+++.+ +..++..|.+. +|+..++-|.||.++
T Consensus 77 ~VVvYd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~L~GG~~~ 123 (132)
T cd01446 77 AVVVYDESSSDRERLREDSTAESVLGKLLRKLQEGCSVYLLKGGFEQ 123 (132)
T ss_pred eEEEEeCCCcchhhccccchHHHHHHHHHHhcCCCceEEEEcchHHH
Confidence 99999997765 55666666664 355678999998754
No 52
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=99.51 E-value=3.3e-14 Score=109.32 Aligned_cols=86 Identities=24% Similarity=0.362 Sum_probs=61.3
Q ss_pred CeEEecCChHHHhcCCCCCCceeCeeccccCCCCC-------------------CCChHHHHHHHhh---ccCCCcEEEE
Q 032698 44 YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGR-------------------VKNPDFLKKVRSL---CKEEDRLVVG 101 (135)
Q Consensus 44 ~~iIDvR~~~e~~~ghIpgA~~~nip~~~~~~~~~-------------------~~~~~~~~~~~~~---~~~~~~vvly 101 (135)
..|||||++.||.+|||||| +|+|+..+++... +..+++...+.++ .+++++||+|
T Consensus 3 ~~liDVRsp~Ef~~ghipgA--iniPl~~~~er~~vgt~ykq~g~~~A~~lg~~~v~~~l~~~i~~~~~~~~~~~~vvvy 80 (311)
T TIGR03167 3 DPLIDVRSPAEFAEGHLPGA--INLPLLNDEERAEVGTLYKQVGPFAAIKLGLALVSPNLAAHVEQWRAFADGPPQPLLY 80 (311)
T ss_pred CEEEECCCHHHHhcCCCcCC--EecccccchhhhhhhhhhhcccHHHHHHHhHhhhhHHHHHHHHHHHhhcCCCCcEEEE
Confidence 57999999999999999999 9999954322110 1112333434333 2455569999
Q ss_pred cC-CCcchHHHHHHHHHhCCCceEeecCCCccc
Q 032698 102 CQ-SGARSLHATADLLGAVSFRLRFQFSPTKEA 133 (135)
Q Consensus 102 C~-~G~~a~~~~~~l~~~gG~~~~~~~~~~~~~ 133 (135)
|. +|.+|..++++|... ||+ ++.+.||+.+
T Consensus 81 C~~gG~RS~~aa~~L~~~-G~~-v~~L~GG~~a 111 (311)
T TIGR03167 81 CWRGGMRSGSLAWLLAQI-GFR-VPRLEGGYKA 111 (311)
T ss_pred ECCCChHHHHHHHHHHHc-CCC-EEEecChHHH
Confidence 96 788999999888665 786 7899998753
No 53
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=99.51 E-value=5.2e-14 Score=113.93 Aligned_cols=82 Identities=15% Similarity=0.229 Sum_probs=67.9
Q ss_pred HHHHHHHhhCCCeEEecCChHHHhcCCCCC----CceeCeeccccCCCCCCCChHHHHHHHhhccCCCcEEEEcCCCcch
Q 032698 33 VRAAKNLLESGYGYLDVRTAEEFKEGHVDA----AKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSGARS 108 (135)
Q Consensus 33 ~~el~~~l~~~~~iIDvR~~~e~~~ghIpg----A~~~nip~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvlyC~~G~~a 108 (135)
+.+..+.+..+.++||+|+++||..+|||| | +|+|+. ++...+... ++++++++||.+|.+|
T Consensus 397 ~~~~~~~~~~~~~lIDVR~~~E~~~~hI~g~~~~a--~niP~~-----------~l~~~~~~l-~~~~~iivyC~~G~rS 462 (482)
T PRK01269 397 EVETVSELPPDDVIIDIRSPDEQEDKPLKLEGVEV--KSLPFY-----------KLSTQFGDL-DQSKTYLLYCDRGVMS 462 (482)
T ss_pred hhHHHHhcCCCCEEEECCCHHHHhcCCCCCCCceE--EECCHH-----------HHHHHHhhc-CCCCeEEEECCCCHHH
Confidence 344555555678999999999999999999 9 999985 555555554 8889999999999999
Q ss_pred HHHHHHHHHhCCCceEeecCC
Q 032698 109 LHATADLLGAVSFRLRFQFSP 129 (135)
Q Consensus 109 ~~~~~~l~~~gG~~~~~~~~~ 129 (135)
..++..|.+ .||++++.|.|
T Consensus 463 ~~aa~~L~~-~G~~nv~~y~~ 482 (482)
T PRK01269 463 RLQALYLRE-QGFSNVKVYRP 482 (482)
T ss_pred HHHHHHHHH-cCCccEEecCC
Confidence 999998876 59999998876
No 54
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=99.44 E-value=1.2e-13 Score=104.15 Aligned_cols=92 Identities=18% Similarity=0.247 Sum_probs=78.4
Q ss_pred cceeCHHHHHHHhhC-CCeEEecCChHHHhcCCCCCCceeCeeccccCCCCCCCChHHHHHHHhh--ccCCCcEEEEcCC
Q 032698 28 VITVDVRAAKNLLES-GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL--CKEEDRLVVGCQS 104 (135)
Q Consensus 28 ~~~is~~el~~~l~~-~~~iIDvR~~~e~~~ghIpgA~~~nip~~~~~~~~~~~~~~~~~~~~~~--~~~~~~vvlyC~~ 104 (135)
-..++|+++.+++.+ +.++||+|+.-||.-||..|| ++.+.. ++. +|.+++.+. .-++++|+.||.+
T Consensus 112 G~yl~p~~wn~~l~D~~~vviDtRN~YE~~iG~F~gA--v~p~~~------tFr--efP~~v~~~~~~~~~KkVvmyCTG 181 (308)
T COG1054 112 GTYLSPKDWNELLSDPDVVVIDTRNDYEVAIGHFEGA--VEPDIE------TFR--EFPAWVEENLDLLKDKKVVMYCTG 181 (308)
T ss_pred cCccCHHHHHHHhcCCCeEEEEcCcceeEeeeeecCc--cCCChh------hhh--hhHHHHHHHHHhccCCcEEEEcCC
Confidence 356999999999988 579999999999999999999 888763 222 666666654 3578899999999
Q ss_pred CcchHHHHHHHHHhCCCceEeecCCC
Q 032698 105 GARSLHATADLLGAVSFRLRFQFSPT 130 (135)
Q Consensus 105 G~~a~~~~~~l~~~gG~~~~~~~~~~ 130 (135)
|.|...+..||+.. ||+.+|+|.||
T Consensus 182 GIRCEKas~~m~~~-GF~eVyhL~GG 206 (308)
T COG1054 182 GIRCEKASAWMKEN-GFKEVYHLEGG 206 (308)
T ss_pred ceeehhhHHHHHHh-cchhhhcccch
Confidence 99999999999887 99999999997
No 55
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.44 E-value=1e-12 Score=99.74 Aligned_cols=104 Identities=17% Similarity=0.118 Sum_probs=82.2
Q ss_pred CcceeCHHHHHHHhhC------CCeEEecCCh--HHHhcCCCCCCceeCeeccc--cCCC---CCCCC-hHHHHHHHhh-
Q 032698 27 EVITVDVRAAKNLLES------GYGYLDVRTA--EEFKEGHVDAAKIFNIPYMF--NTPE---GRVKN-PDFLKKVRSL- 91 (135)
Q Consensus 27 ~~~~is~~el~~~l~~------~~~iIDvR~~--~e~~~ghIpgA~~~nip~~~--~~~~---~~~~~-~~~~~~~~~~- 91 (135)
....|+++++.+.+++ +..+++++.. ++|..+||||| +.++... ..+. ..+.+ ++|.+.+.++
T Consensus 9 ~~~lVs~~wl~~~l~~~~~~~~d~~~~~~~~~~~~~Y~~~HIPGA--v~~d~~~~~~~~~~~~~~lp~~e~fa~~~~~~G 86 (285)
T COG2897 9 SEFLVSPDWLAENLDDPAVVIVDARIILPDPDDAEEYLEGHIPGA--VFFDWEADLSDPVPLPHMLPSPEQFAKLLGELG 86 (285)
T ss_pred cceEEcHHHHHhhccccccccCceEEEeCCcchHHHHHhccCCCC--EecCHHHhhcCCCCCCCCCCCHHHHHHHHHHcC
Confidence 4567999999999975 2355555554 88999999999 5555433 2322 33444 4788888888
Q ss_pred ccCCCcEEEEcCCCcchHHHHHHHHHhCCCceEeecCCCcc
Q 032698 92 CKEEDRLVVGCQSGARSLHATADLLGAVSFRLRFQFSPTKE 132 (135)
Q Consensus 92 ~~~~~~vvlyC~~G~~a~~~~~~l~~~gG~~~~~~~~~~~~ 132 (135)
++++++||+|+..+...+..++|+++..|+++++.|+||+.
T Consensus 87 I~~d~tVVvYdd~~~~~A~ra~W~l~~~Gh~~V~iLdGG~~ 127 (285)
T COG2897 87 IRNDDTVVVYDDGGGFFAARAWWLLRYLGHENVRILDGGLP 127 (285)
T ss_pred CCCCCEEEEECCCCCeehHHHHHHHHHcCCCceEEecCCHH
Confidence 99999999999988888888999999999999999999974
No 56
>KOG3772 consensus M-phase inducer phosphatase [Cell cycle control, cell division, chromosome partitioning]
Probab=99.01 E-value=8.4e-10 Score=84.49 Aligned_cols=96 Identities=17% Similarity=0.209 Sum_probs=69.5
Q ss_pred cCCCcceeCHHHHHHHhhCC-------CeEEecCChHHHhcCCCCCCceeCeeccccCCCCCCCChHHHHHHHhh--cc-
Q 032698 24 SGAEVITVDVRAAKNLLESG-------YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL--CK- 93 (135)
Q Consensus 24 ~~~~~~~is~~el~~~l~~~-------~~iIDvR~~~e~~~ghIpgA~~~nip~~~~~~~~~~~~~~~~~~~~~~--~~- 93 (135)
....+..||++.++.++++. .+|||+|-|-||.+|||+|| +||+... ++...+... ..
T Consensus 151 k~~~~k~Is~etl~~ll~~~~~~~~~~~~iiDcR~pyEY~GGHIkga--vnl~~~~----------~~~~~f~~~~~~~~ 218 (325)
T KOG3772|consen 151 KSQDLKYISPETLKGLLQGKFSDFFDKFIIIDCRYPYEYEGGHIKGA--VNLYSKE----------LLQDFFLLKDGVPS 218 (325)
T ss_pred ccccccccCHHHHHHHHHhccccceeeEEEEEeCCcccccCcccccc--eecccHh----------hhhhhhcccccccc
Confidence 55668999999999999862 36999999999999999999 9998741 222222221 11
Q ss_pred --CCCcEEEEcC-CCcchHHHHHHHHH-----------hCCCceEeecCCCc
Q 032698 94 --EEDRLVVGCQ-SGARSLHATADLLG-----------AVSFRLRFQFSPTK 131 (135)
Q Consensus 94 --~~~~vvlyC~-~G~~a~~~~~~l~~-----------~gG~~~~~~~~~~~ 131 (135)
+...+|+||. +..|+..+|..|.+ ...|...|.|.||-
T Consensus 219 ~~~~~i~IFhCefSq~RGP~mA~~lr~iDR~r~~~~yp~l~ypE~yiL~gGY 270 (325)
T KOG3772|consen 219 GSKRVILIFHCEFSQERGPKMARHLRNIDRDRNSNDYPKLSYPELYILDGGY 270 (325)
T ss_pred ccCceeEEEEeeeccccCHHHHHHHHHhhhhhhcccCcccccchheeecccH
Confidence 2234799999 88999999999985 23455566666664
No 57
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=98.93 E-value=9.7e-10 Score=84.79 Aligned_cols=96 Identities=25% Similarity=0.202 Sum_probs=72.4
Q ss_pred cceeCHHHHHHHhhCC--CeEEecCChHHHhcCCCCCCceeCeeccccCCCCCCCChHHHHHHHhh-ccCCCcEEEEcCC
Q 032698 28 VITVDVRAAKNLLESG--YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL-CKEEDRLVVGCQS 104 (135)
Q Consensus 28 ~~~is~~el~~~l~~~--~~iIDvR~~~e~~~ghIpgA~~~nip~~~~~~~~~~~~~~~~~~~~~~-~~~~~~vvlyC~~ 104 (135)
..+|+..|++..++++ .+++|||++.||+--|+|+| +|||..+..... - +..... -...++|+++|..
T Consensus 316 ~~Rvsv~d~k~il~~~~~h~llDvRp~~~~eI~~lP~a--vNIPL~~l~~~~------~-~~~~~~~~~~~~~I~ViCrr 386 (427)
T KOG2017|consen 316 DERVSVTDYKRILDSGAKHLLLDVRPSHEYEICRLPEA--VNIPLKELRSRS------G-KKLQGDLNTESKDIFVICRR 386 (427)
T ss_pred hhcccHHHHHHHHhcCCCeEEEeccCcceEEEEecccc--cccchhhhhhhh------h-hhhcccccccCCCEEEEeCC
Confidence 5679999999999884 69999999999999999999 999995221111 0 122222 2456789999999
Q ss_pred CcchHHHHHHHHHhCCCceEeecCCCcc
Q 032698 105 GARSLHATADLLGAVSFRLRFQFSPTKE 132 (135)
Q Consensus 105 G~~a~~~~~~l~~~gG~~~~~~~~~~~~ 132 (135)
|..|+.+++.|++..++..+.++=||-+
T Consensus 387 GNdSQ~Av~~Lre~~~~~~vrDvigGl~ 414 (427)
T KOG2017|consen 387 GNDSQRAVRILREKFPDSSVRDVIGGLK 414 (427)
T ss_pred CCchHHHHHHHHhhCCchhhhhhhhHHH
Confidence 9999999999987766655556555543
No 58
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=98.74 E-value=7.1e-08 Score=72.71 Aligned_cols=101 Identities=17% Similarity=0.093 Sum_probs=79.2
Q ss_pred ceeCHHHHHHHhhC-CCeEEecC---------ChHHHhcCCCCCCceeCeeccccCCC-----CCCCC-hHHHHHHHhh-
Q 032698 29 ITVDVRAAKNLLES-GYGYLDVR---------TAEEFKEGHVDAAKIFNIPYMFNTPE-----GRVKN-PDFLKKVRSL- 91 (135)
Q Consensus 29 ~~is~~el~~~l~~-~~~iIDvR---------~~~e~~~ghIpgA~~~nip~~~~~~~-----~~~~~-~~~~~~~~~~- 91 (135)
..+++.++.+.+.+ +.+|||.. ...||...||||| .+++.....-. ..++. +.|++..+.+
T Consensus 5 ~iv~~~~v~~~~~~~~~~iLDaSw~~~~~~~~~~~e~~~~hipga--~~fdld~~~~~s~~~~~~lp~~e~Fa~y~~~lG 82 (286)
T KOG1529|consen 5 SIVSVKWVMENLGNHGLRILDASWYFPPLRRIAEFEFLERHIPGA--SHFDLDIISYPSSPYRHMLPTAEHFAEYASRLG 82 (286)
T ss_pred cccChHHHHHhCcCCCeEEEeeeeecCchhhhhhhhhhhccCCCc--eeeeccccccCCCcccccCccHHHHHHHHHhcC
Confidence 45899999999987 67899985 3567888999999 55554333211 12222 4677888887
Q ss_pred ccCCCcEEEEcC--CCcchHHHHHHHHHhCCCceEeecCCCc
Q 032698 92 CKEEDRLVVGCQ--SGARSLHATADLLGAVSFRLRFQFSPTK 131 (135)
Q Consensus 92 ~~~~~~vvlyC~--~G~~a~~~~~~l~~~gG~~~~~~~~~~~ 131 (135)
++.+.++|+|++ .|..++..++|..+..|++.++=|+||-
T Consensus 83 i~n~d~vViYd~~~~Gm~~Asrv~W~fr~fGh~~VslL~GG~ 124 (286)
T KOG1529|consen 83 VDNGDHVVIYDRGDGGMFSASRVWWTFRVFGHTKVSLLNGGF 124 (286)
T ss_pred CCCCCeEEEEcCCCcceeehhhHHHHHHHhCccEEEEecCcH
Confidence 889999999999 8999999999999999999999999974
No 59
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=98.47 E-value=4.4e-07 Score=68.48 Aligned_cols=85 Identities=22% Similarity=0.361 Sum_probs=63.5
Q ss_pred CCeEEecCChHHHh-----------cCCCCCCceeCeecccc-CCCCCCC-ChHHHHHHHhh-ccCCCcEEEEcCCCcch
Q 032698 43 GYGYLDVRTAEEFK-----------EGHVDAAKIFNIPYMFN-TPEGRVK-NPDFLKKVRSL-CKEEDRLVVGCQSGARS 108 (135)
Q Consensus 43 ~~~iIDvR~~~e~~-----------~ghIpgA~~~nip~~~~-~~~~~~~-~~~~~~~~~~~-~~~~~~vvlyC~~G~~a 108 (135)
+..++|.|+..+|. .|||||| +|+|+... .+.+... ..++...+.+. +..++|+++-|..|..+
T Consensus 172 ~~~~~DaRs~grF~Gt~p~~~~~~~ggHIpGa--~n~P~~~~~~~~g~~k~~edl~~~f~~~~l~~~~p~~~sC~~Gisa 249 (286)
T KOG1529|consen 172 NFQYLDARSKGRFDGTEPEPRSGATGGHIPGA--INFPFDEVLDPDGFIKPAEDLKHLFAQKGLKLSKPVIVSCGTGISA 249 (286)
T ss_pred cceeeeccccccccccCCCCcccCcCccCCCc--ccCChHHhcccccccCCHHHHHHHHHhcCcccCCCEEEeeccchhH
Confidence 36899999988883 5999999 99998654 2333333 34666777766 67799999999999998
Q ss_pred HHHHHHHHHhCCCceEeecCCCc
Q 032698 109 LHATADLLGAVSFRLRFQFSPTK 131 (135)
Q Consensus 109 ~~~~~~l~~~gG~~~~~~~~~~~ 131 (135)
+..+-.+.+ .| ...--|.|.|
T Consensus 250 ~~i~~al~r-~g-~~~~lYdGS~ 270 (286)
T KOG1529|consen 250 SIIALALER-SG-PDAKLYDGSW 270 (286)
T ss_pred HHHHHHHHh-cC-CCcceecccH
Confidence 888876655 46 5566677765
No 60
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=98.43 E-value=2.6e-06 Score=58.13 Aligned_cols=86 Identities=19% Similarity=0.221 Sum_probs=56.3
Q ss_pred cceeCHHHHHHHhhCCC-eEEecCChHHHhcCC----------CCCCceeCeeccccCCCCCCCChHHHHHHHhhc-cCC
Q 032698 28 VITVDVRAAKNLLESGY-GYLDVRTAEEFKEGH----------VDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLC-KEE 95 (135)
Q Consensus 28 ~~~is~~el~~~l~~~~-~iIDvR~~~e~~~gh----------IpgA~~~nip~~~~~~~~~~~~~~~~~~~~~~~-~~~ 95 (135)
.+.++++++..+.+.|+ .|||.|+..|-.... -+|..++++|... ..+ +++-...+.+.+ ..+
T Consensus 12 s~qlt~~d~~~L~~~GiktVIdlR~~~E~~~~p~~~~~~~~a~~~gl~y~~iPv~~----~~~-~~~~v~~f~~~~~~~~ 86 (135)
T TIGR01244 12 SPQLTKADAAQAAQLGFKTVINNRPDREEESQPDFAQIKAAAEAAGVTYHHQPVTA----GDI-TPDDVETFRAAIGAAE 86 (135)
T ss_pred cCCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHCCCeEEEeecCC----CCC-CHHHHHHHHHHHHhCC
Confidence 46689999988766674 899999876643211 2577788998752 122 222233333332 346
Q ss_pred CcEEEEcCCCcchHHHHHHHHHh
Q 032698 96 DRLVVGCQSGARSLHATADLLGA 118 (135)
Q Consensus 96 ~~vvlyC~~G~~a~~~~~~l~~~ 118 (135)
+||++||.+|.|+..++.+++..
T Consensus 87 ~pvL~HC~sG~Rt~~l~al~~~~ 109 (135)
T TIGR01244 87 GPVLAYCRSGTRSSLLWGFRQAA 109 (135)
T ss_pred CCEEEEcCCChHHHHHHHHHHHH
Confidence 89999999999887776654443
No 61
>COG5105 MIH1 Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning]
Probab=98.34 E-value=1.3e-06 Score=67.12 Aligned_cols=97 Identities=19% Similarity=0.276 Sum_probs=72.3
Q ss_pred cCCCcceeCHHHHHHHhhCC----C---eEEecCChHHHhcCCCCCCceeCeeccccCCCCCCCChHHHHHHHhh-ccCC
Q 032698 24 SGAEVITVDVRAAKNLLESG----Y---GYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL-CKEE 95 (135)
Q Consensus 24 ~~~~~~~is~~el~~~l~~~----~---~iIDvR~~~e~~~ghIpgA~~~nip~~~~~~~~~~~~~~~~~~~~~~-~~~~ 95 (135)
...-.++|+++.+++.+++. . .|||+|=+-||.+|||-+| +||... +++...+.-. +...
T Consensus 237 k~Ds~~RIs~etlk~vl~g~~~~~f~kCiIIDCRFeYEY~GGHIina--VNi~s~----------~~l~~~F~hkplThp 304 (427)
T COG5105 237 KSDSIQRISVETLKQVLEGMYNIDFLKCIIIDCRFEYEYRGGHIINA--VNISST----------KKLGLLFRHKPLTHP 304 (427)
T ss_pred cccchhhcCHHHHHHHHhchhhhhhhceeEEeecceeeecCceeeee--eecchH----------HHHHHHHHhccccCc
Confidence 34457899999999999863 2 6999999999999999999 999763 2343333322 2223
Q ss_pred CcEEEEcC-CCcchHHHHHHHHHh-----------CCCceEeecCCCcc
Q 032698 96 DRLVVGCQ-SGARSLHATADLLGA-----------VSFRLRFQFSPTKE 132 (135)
Q Consensus 96 ~~vvlyC~-~G~~a~~~~~~l~~~-----------gG~~~~~~~~~~~~ 132 (135)
.-+|+.|. +.+|+...|.+|++. ..|..+|.+.||..
T Consensus 305 ~aLifHCEfSshRaP~LA~HlRN~DR~~N~dhYP~L~yPevyIl~GGYk 353 (427)
T COG5105 305 RALIFHCEFSSHRAPRLAQHLRNMDRMKNPDHYPLLTYPEVYILEGGYK 353 (427)
T ss_pred eeEEEEeecccccchhHHHHHhhhhhhcCcccCcccccceEEEecCcHH
Confidence 44789999 789999999999764 35567788888754
No 62
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=98.14 E-value=1.4e-05 Score=52.84 Aligned_cols=82 Identities=15% Similarity=0.148 Sum_probs=44.1
Q ss_pred cceeCHHHHHHHhhCCC-eEEecCChHHHhc----------CCCCCCceeCeeccccCCCCCCCChHHHHHHHhh-ccCC
Q 032698 28 VITVDVRAAKNLLESGY-GYLDVRTAEEFKE----------GHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL-CKEE 95 (135)
Q Consensus 28 ~~~is~~el~~~l~~~~-~iIDvR~~~e~~~----------ghIpgA~~~nip~~~~~~~~~~~~~~~~~~~~~~-~~~~ 95 (135)
.+.++++++.++-+.|+ .||+.|+..|-.. -.--|-.|+++|... ..+ .++-...+.+. -..+
T Consensus 12 s~Q~~~~d~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~----~~~-~~~~v~~f~~~l~~~~ 86 (110)
T PF04273_consen 12 SGQPSPEDLAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPVDG----GAI-TEEDVEAFADALESLP 86 (110)
T ss_dssp ECS--HHHHHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE----T----TT---HHHHHHHHHHHHTTT
T ss_pred CCCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeecCC----CCC-CHHHHHHHHHHHHhCC
Confidence 35689999999998885 8999998654211 111244578888752 122 22333334333 2236
Q ss_pred CcEEEEcCCCcchHHHHHH
Q 032698 96 DRLVVGCQSGARSLHATAD 114 (135)
Q Consensus 96 ~~vvlyC~~G~~a~~~~~~ 114 (135)
+||++||.+|.|+...+..
T Consensus 87 ~Pvl~hC~sG~Ra~~l~~l 105 (110)
T PF04273_consen 87 KPVLAHCRSGTRASALWAL 105 (110)
T ss_dssp TSEEEE-SCSHHHHHHHHH
T ss_pred CCEEEECCCChhHHHHHHH
Confidence 7999999999999876653
No 63
>COG2603 Predicted ATPase [General function prediction only]
Probab=97.79 E-value=2.1e-05 Score=59.87 Aligned_cols=88 Identities=23% Similarity=0.293 Sum_probs=56.5
Q ss_pred HHHHHHHhhCCCeEEecCChHHHhcCCCCCCceeCeeccccCCCCC--------C-------CC----hHHH-HHHHhh-
Q 032698 33 VRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGR--------V-------KN----PDFL-KKVRSL- 91 (135)
Q Consensus 33 ~~el~~~l~~~~~iIDvR~~~e~~~ghIpgA~~~nip~~~~~~~~~--------~-------~~----~~~~-~~~~~~- 91 (135)
.+++..++-++..+||||.|.||..|+.|++ +|+|...+.+... . .. .++. ..+..+
T Consensus 5 ~q~~~~~~~~~~~lid~rap~ef~~g~~~ia--~nl~~~ndder~~Igt~yKk~~~~~a~alg~~~vcG~i~~~~l~ask 82 (334)
T COG2603 5 EQDYRALLLADTPLIDVRAPIEFENGAMPIA--INLPLMNDDERQEIGTCYKKQGQDAAKALGHALVCGEIRQQRLEASK 82 (334)
T ss_pred HHHHHHHHhcCCceeeccchHHHhcccchhh--hccccccchHHHHHHHHHhhcCcHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4455566666788999999999999999999 9999865432111 0 00 0111 111111
Q ss_pred -ccCCCcEEEEcC-CCcchHHHHHHHHHhCCCc
Q 032698 92 -CKEEDRLVVGCQ-SGARSLHATADLLGAVSFR 122 (135)
Q Consensus 92 -~~~~~~vvlyC~-~G~~a~~~~~~l~~~gG~~ 122 (135)
...+.|+-++|. +|.++...+.|+....|++
T Consensus 83 ~f~e~~~~Gi~c~rgg~rsk~v~~~l~~~~g~~ 115 (334)
T COG2603 83 AFQEENPVGILCARGGLRSKIVQKWLGYAAGID 115 (334)
T ss_pred HHHHhCCcceeeccccchhHHHHHHHHHHHHhh
Confidence 234667777798 5778999999994444443
No 64
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=97.06 E-value=0.0036 Score=43.74 Aligned_cols=97 Identities=18% Similarity=0.287 Sum_probs=48.8
Q ss_pred CCcceeCHHHHHHHhhCCC-eEEecCChHHHhc---CCCCCCceeCeeccccCCCC--C---------------------
Q 032698 26 AEVITVDVRAAKNLLESGY-GYLDVRTAEEFKE---GHVDAAKIFNIPYMFNTPEG--R--------------------- 78 (135)
Q Consensus 26 ~~~~~is~~el~~~l~~~~-~iIDvR~~~e~~~---ghIpgA~~~nip~~~~~~~~--~--------------------- 78 (135)
+.+..+|+++...+.+-+. .|||.|++.|... -.++|+.++++|........ .
T Consensus 25 ~~l~~lt~~d~~~L~~lgI~tIiDLRs~~E~~~~p~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~ 104 (164)
T PF13350_consen 25 GNLSNLTEADLERLRELGIRTIIDLRSPTERERAPDPLIDGVQYVHIPIFGDDASSPDKLAELLQSSADAPRGMLEFYRE 104 (164)
T ss_dssp S--TT--HHHHHHHHHTT--EEEE-S-HHHHHHHS----TT-EEEE--SS-S-TTH----------HHHHHHHHHHHHHH
T ss_pred CCcCcCCHHHHHHHHhCCCCEEEECCCccccccCCCCCcCCceeeeecccccccccccccccccccccchhhHHHHHHHH
Confidence 3456689999988775574 8999999999764 34678878888875432221 0
Q ss_pred -CC--ChHHHHHHHhhccCCCcEEEEcCCCc-chHHHHHHHHHhCCCc
Q 032698 79 -VK--NPDFLKKVRSLCKEEDRLVVGCQSGA-RSLHATADLLGAVSFR 122 (135)
Q Consensus 79 -~~--~~~~~~~~~~~~~~~~~vvlyC~~G~-~a~~~~~~l~~~gG~~ 122 (135)
+. .+.+.+.+..+.+...|++++|..|. |.-.++..++...|..
T Consensus 105 ~~~~~~~~~~~~~~~l~~~~~p~l~HC~aGKDRTG~~~alll~~lGV~ 152 (164)
T PF13350_consen 105 MLESYAEAYRKIFELLADAPGPVLFHCTAGKDRTGVVAALLLSLLGVP 152 (164)
T ss_dssp GGGSTHHHHHHHHHHHH-TT--EEEE-SSSSSHHHHHHHHHHHHTT--
T ss_pred HHHhhhHHHHHHHHHhccCCCcEEEECCCCCccHHHHHHHHHHHcCCC
Confidence 11 12344444333334479999999764 5666666677776754
No 65
>PLN02727 NAD kinase
Probab=96.94 E-value=0.0034 Score=54.59 Aligned_cols=88 Identities=17% Similarity=0.166 Sum_probs=55.4
Q ss_pred cceeCHHHHHHHhhCCC-eEEecCChHHHhcCCC----------CCCceeCeeccccCCCCCCCChHHHHHHHhhc--cC
Q 032698 28 VITVDVRAAKNLLESGY-GYLDVRTAEEFKEGHV----------DAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLC--KE 94 (135)
Q Consensus 28 ~~~is~~el~~~l~~~~-~iIDvR~~~e~~~ghI----------pgA~~~nip~~~~~~~~~~~~~~~~~~~~~~~--~~ 94 (135)
...++++++.++.+.|+ .||+.|+..|- .+.- .|-.++++|... .....++..+.+.+.+ .-
T Consensus 266 sgQpspe~la~LA~~GfKTIINLRpd~E~-~q~~~~ee~eAae~~GL~yVhIPVs~----~~apt~EqVe~fa~~l~~sl 340 (986)
T PLN02727 266 GGQVTEEGLKWLLEKGFKTIVDLRAEIVK-DNFYQAAVDDAISSGKIEVVKIPVEV----RTAPSAEQVEKFASLVSDSS 340 (986)
T ss_pred eCCCCHHHHHHHHHCCCeEEEECCCCCcC-CCchhHHHHHHHHHcCCeEEEeecCC----CCCCCHHHHHHHHHHHHhhc
Confidence 46789999988888885 89999987662 2221 245678888731 1122223333343433 24
Q ss_pred CCcEEEEcCCCcc--hHHHHHHHHHhCC
Q 032698 95 EDRLVVGCQSGAR--SLHATADLLGAVS 120 (135)
Q Consensus 95 ~~~vvlyC~~G~~--a~~~~~~l~~~gG 120 (135)
.+||++||.+|.+ +..++.|+....+
T Consensus 341 pkPVLvHCKSGarRAGamvA~yl~~~~~ 368 (986)
T PLN02727 341 KKPIYLHSKEGVWRTSAMVSRWKQYMTR 368 (986)
T ss_pred CCCEEEECCCCCchHHHHHHHHHHHHcc
Confidence 7899999999984 4455556654444
No 66
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=96.68 E-value=0.006 Score=40.86 Aligned_cols=81 Identities=14% Similarity=0.212 Sum_probs=45.6
Q ss_pred hCC-CeEEecCChHHHhcCCCCCCceeCeeccccCCCCCCCC--hHHHHHHHhhccCCCcEEEEcCCCc-chHHH-HHHH
Q 032698 41 ESG-YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKN--PDFLKKVRSLCKEEDRLVVGCQSGA-RSLHA-TADL 115 (135)
Q Consensus 41 ~~~-~~iIDvR~~~e~~~ghIpgA~~~nip~~~~~~~~~~~~--~~~~~~~~~~~~~~~~vvlyC~~G~-~a~~~-~~~l 115 (135)
+.+ ..|||+++..+...-+.+|-.+.++|..... ...... +.+.+.+......+++|+++|..|. |+..+ +.++
T Consensus 25 ~~gi~~VI~l~~~~~~~~~~~~~~~~~~~~~~D~~-~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~~~l 103 (139)
T cd00127 25 KLGITHVLNVAKEVPNENLFLSDFNYLYVPILDLP-SQDISKYFDEAVDFIDDAREKGGKVLVHCLAGVSRSATLVIAYL 103 (139)
T ss_pred HcCCCEEEEcccCCCCcccCCCCceEEEEEceeCC-CCChHHHHHHHHHHHHHHHhcCCcEEEECCCCCchhHHHHHHHH
Confidence 346 4899999877753333455566888875221 111100 1222333333346789999999875 65544 4556
Q ss_pred HHhCCCc
Q 032698 116 LGAVSFR 122 (135)
Q Consensus 116 ~~~gG~~ 122 (135)
...++.+
T Consensus 104 ~~~~~~~ 110 (139)
T cd00127 104 MKTLGLS 110 (139)
T ss_pred HHHcCCC
Confidence 5555543
No 67
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=96.18 E-value=0.0014 Score=50.89 Aligned_cols=61 Identities=8% Similarity=-0.117 Sum_probs=46.4
Q ss_pred ceeCHHHHHHHhhCCCeEEecCChHHHhcCCCCCCceeCeeccccCCCCCCCChHHHHHHHhhc--cCCCcEEEEc
Q 032698 29 ITVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLC--KEEDRLVVGC 102 (135)
Q Consensus 29 ~~is~~el~~~l~~~~~iIDvR~~~e~~~ghIpgA~~~nip~~~~~~~~~~~~~~~~~~~~~~~--~~~~~vvlyC 102 (135)
+.-+++++.+.+.++..++|+|+...|..+||||+ +++|.. .+..++..+. +..+++++.-
T Consensus 14 ~i~~~~~~~~~l~~~~~~~d~rg~i~~a~egIngt--is~~~~-----------~~~~~~~~l~~~~~~~~i~l~~ 76 (314)
T PRK00142 14 PIEDPEAFRDEHLALCKSLGLKGRILVAEEGINGT--VSGTIE-----------QTEAYMAWLKADPRFADIRFKI 76 (314)
T ss_pred cCCCHHHHHHHHHHHHHHcCCeeEEEEcCCCceEE--EEecHH-----------HHHHHHHHHhhCcCCCCceEEe
Confidence 34578888888887778999999999999999999 999974 6666666652 2356665543
No 68
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.03 E-value=0.047 Score=36.60 Aligned_cols=87 Identities=16% Similarity=0.177 Sum_probs=53.8
Q ss_pred cceeCHHHHHHHhhCCC-eEEecCChHHHhc----------CCCCCCceeCeeccccCCCCCCCCh---HHHHHHHhhcc
Q 032698 28 VITVDVRAAKNLLESGY-GYLDVRTAEEFKE----------GHVDAAKIFNIPYMFNTPEGRVKNP---DFLKKVRSLCK 93 (135)
Q Consensus 28 ~~~is~~el~~~l~~~~-~iIDvR~~~e~~~----------ghIpgA~~~nip~~~~~~~~~~~~~---~~~~~~~~~~~ 93 (135)
.+.++++++.+.-..|+ .||..||..|-.. ..-.|-.|.++|... ...+.. .|...+. .
T Consensus 13 sgQi~~~D~~~iaa~GFksiI~nRPDgEe~~QP~~~~i~~aa~~aGl~y~~iPV~~----~~iT~~dV~~f~~Al~---e 85 (130)
T COG3453 13 SGQISPADIASIAALGFKSIICNRPDGEEPGQPGFAAIAAAAEAAGLTYTHIPVTG----GGITEADVEAFQRALD---E 85 (130)
T ss_pred cCCCCHHHHHHHHHhccceecccCCCCCCCCCCChHHHHHHHHhcCCceEEeecCC----CCCCHHHHHHHHHHHH---H
Confidence 57799999999988885 7999997544311 001122346666631 122222 2333333 3
Q ss_pred CCCcEEEEcCCCcchHHHHHHHHHhCCC
Q 032698 94 EEDRLVVGCQSGARSLHATADLLGAVSF 121 (135)
Q Consensus 94 ~~~~vvlyC~~G~~a~~~~~~l~~~gG~ 121 (135)
-+.||+-||.+|.|+......-...+|-
T Consensus 86 aegPVlayCrsGtRs~~ly~~~~~~~gm 113 (130)
T COG3453 86 AEGPVLAYCRSGTRSLNLYGLGELDGGM 113 (130)
T ss_pred hCCCEEeeecCCchHHHHHHHHHHhcCC
Confidence 4789999999999988876655444443
No 69
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=95.35 E-value=0.057 Score=41.88 Aligned_cols=69 Identities=14% Similarity=0.164 Sum_probs=45.5
Q ss_pred cceeCHHHHHHHhhC-CCeEEecCChHHHhc---CCCC-CCceeCeeccccCCCCCCCChHHHHHHHhhccCCCcEEEEc
Q 032698 28 VITVDVRAAKNLLES-GYGYLDVRTAEEFKE---GHVD-AAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGC 102 (135)
Q Consensus 28 ~~~is~~el~~~l~~-~~~iIDvR~~~e~~~---ghIp-gA~~~nip~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvlyC 102 (135)
...++..++.+.+++ +..|||+|+..+|.+ |||| +. -|.+ ..+ ...+...+.. ++++++|++-|
T Consensus 135 ~tg~gKt~Ll~~L~~~~~~VvDlr~~a~hrGs~fG~~~~~~----qpsq-----~~f-e~~L~~~l~~-~~~~~~i~~e~ 203 (311)
T TIGR03167 135 MTGSGKTELLHALANAGAQVLDLEGLANHRGSSFGALGLGP----QPSQ-----KRF-ENALAEALRR-LDPGRPIFVED 203 (311)
T ss_pred CCCcCHHHHHHHHhcCCCeEEECCchHHhcCcccCCCCCCC----CCch-----HHH-HHHHHHHHHh-CCCCceEEEEe
Confidence 456788899999877 578999999999987 7887 43 2332 001 0122223322 37778899988
Q ss_pred CCCcc
Q 032698 103 QSGAR 107 (135)
Q Consensus 103 ~~G~~ 107 (135)
.+..-
T Consensus 204 es~~i 208 (311)
T TIGR03167 204 ESRRI 208 (311)
T ss_pred Cchhh
Confidence 86543
No 70
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=95.23 E-value=0.092 Score=35.21 Aligned_cols=84 Identities=19% Similarity=0.279 Sum_probs=45.8
Q ss_pred HHHHhhCCC-eEEecCChHHHhcCCCCCCceeCeeccccCCCCCCCC--hHHHHHHHhhccCCCcEEEEcCCCc-chHH-
Q 032698 36 AKNLLESGY-GYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKN--PDFLKKVRSLCKEEDRLVVGCQSGA-RSLH- 110 (135)
Q Consensus 36 l~~~l~~~~-~iIDvR~~~e~~~ghIpgA~~~nip~~~~~~~~~~~~--~~~~~~~~~~~~~~~~vvlyC~~G~-~a~~- 110 (135)
+..+.+.|+ .||++++..+.. .-+|-.++++|.... ....... +...+.+......+++|+++|..|. |+..
T Consensus 19 ~~~l~~~gi~~Vi~l~~~~~~~--~~~~~~~~~ipi~D~-~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v 95 (138)
T smart00195 19 LALLKKLGITHVINVTNEVPNL--NKKGFTYLGVPILDN-TETKISPYFPEAVEFIEDAEKKGGKVLVHCQAGVSRSATL 95 (138)
T ss_pred HHHHHHcCCCEEEEccCCCCCC--CCCCCEEEEEECCCC-CCCChHHHHHHHHHHHHHHhcCCCeEEEECCCCCchHHHH
Confidence 333334464 799998755421 234456788887531 1111110 1122223222467889999999874 6555
Q ss_pred HHHHHHHhCCCc
Q 032698 111 ATADLLGAVSFR 122 (135)
Q Consensus 111 ~~~~l~~~gG~~ 122 (135)
++.++....|++
T Consensus 96 ~~~yl~~~~~~~ 107 (138)
T smart00195 96 IIAYLMKYRNLS 107 (138)
T ss_pred HHHHHHHHhCCC
Confidence 455666665654
No 71
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]
Probab=93.92 E-value=0.023 Score=47.30 Aligned_cols=42 Identities=24% Similarity=0.335 Sum_probs=34.9
Q ss_pred CCcceeCHHHHHHHhhCCCeEEecCChHHHhcCCCCCCceeCeecc
Q 032698 26 AEVITVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYM 71 (135)
Q Consensus 26 ~~~~~is~~el~~~l~~~~~iIDvR~~~e~~~ghIpgA~~~nip~~ 71 (135)
...++++++++... ....++|.|...||.++|++++ +|+|+.
T Consensus 619 e~~prmsAedl~~~--~~l~v~d~r~~~ef~r~~~s~s--~nip~~ 660 (725)
T KOG1093|consen 619 EHCPRISAEDLIWL--KMLYVLDTRQESEFQREHFSDS--INIPFN 660 (725)
T ss_pred hcCccccHHHHHHH--HHHHHHhHHHHHHHHHhhcccc--ccCCcc
Confidence 44577888887666 2367999999999999999999 999985
No 72
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=92.21 E-value=1.3 Score=31.13 Aligned_cols=84 Identities=15% Similarity=0.251 Sum_probs=42.0
Q ss_pred HHHHhhCCC-eEEecCC----hHHHhcCCCCCCceeCeeccccCCCCCCCChHHHHHHHhhc----cCCCcEEEEcCCC-
Q 032698 36 AKNLLESGY-GYLDVRT----AEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLC----KEEDRLVVGCQSG- 105 (135)
Q Consensus 36 l~~~l~~~~-~iIDvR~----~~e~~~ghIpgA~~~nip~~~~~~~~~~~~~~~~~~~~~~~----~~~~~vvlyC~~G- 105 (135)
+..+.+.++ .||.+.. ++.+...+| .+.++|.........-.-.++.+.+.+.. .++.+|+|.|..|
T Consensus 33 l~~L~~~gI~~Iv~l~~~~~~~~~~~~~gi---~~~~~p~~D~~~P~~~~i~~~~~~i~~~~~~~~~~g~~V~VHC~aGi 109 (166)
T PTZ00242 33 IKELQRYNVTHLVRVCGPTYDAELLEKNGI---EVHDWPFDDGAPPPKAVIDNWLRLLDQEFAKQSTPPETIAVHCVAGL 109 (166)
T ss_pred HHHHHhCCCeEEEecCCCCCCHHHHHHCCC---EEEecCCCCCCCCCHHHHHHHHHHHHHHHHhhccCCCeEEEECCCCC
Confidence 334444464 5887743 334544445 34666653111111000013333333322 4588999999966
Q ss_pred cchHH-HHHHHHHhCCCc
Q 032698 106 ARSLH-ATADLLGAVSFR 122 (135)
Q Consensus 106 ~~a~~-~~~~l~~~gG~~ 122 (135)
+|+.. ++.+|.+.+|++
T Consensus 110 gRSgt~~a~yL~~~~~~s 127 (166)
T PTZ00242 110 GRAPILVALALVEYGGME 127 (166)
T ss_pred CHHHHHHHHHHHHhCCCC
Confidence 44444 456666666554
No 73
>PRK12361 hypothetical protein; Provisional
Probab=91.55 E-value=0.59 Score=38.83 Aligned_cols=84 Identities=19% Similarity=0.175 Sum_probs=44.5
Q ss_pred CHHHHHHHhhCCC-eEEecCChHHHh--cCCCCCCceeCeeccccCCCCCCCChHHHHHHHh---hccCCCcEEEEcCCC
Q 032698 32 DVRAAKNLLESGY-GYLDVRTAEEFK--EGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRS---LCKEEDRLVVGCQSG 105 (135)
Q Consensus 32 s~~el~~~l~~~~-~iIDvR~~~e~~--~ghIpgA~~~nip~~~~~~~~~~~~~~~~~~~~~---~~~~~~~vvlyC~~G 105 (135)
++.++..+.+.+. .|||++.+.+.. ...-.+-.+.++|....... ...++.+.... ....+++|+++|..|
T Consensus 109 ~a~d~~~L~~~gI~~Vldlt~E~~~~~~~~~~~~i~yl~iPi~D~~~p---~~~~l~~a~~~i~~~~~~~~~VlVHC~~G 185 (547)
T PRK12361 109 FPADLEKLKSNKITAILDVTAEFDGLDWSLTEEDIDYLNIPILDHSVP---TLAQLNQAINWIHRQVRANKSVVVHCALG 185 (547)
T ss_pred CcccHHHHHHcCCCEEEEcccccccccccccccCceEEEeecCCCCCC---cHHHHHHHHHHHHHHHHCCCeEEEECCCC
Confidence 4555555555564 799999532211 11123346788887532111 11233332322 234678899999966
Q ss_pred c-chHH-HHHHHHHh
Q 032698 106 A-RSLH-ATADLLGA 118 (135)
Q Consensus 106 ~-~a~~-~~~~l~~~ 118 (135)
. ||.. ++.+|...
T Consensus 186 ~sRSa~vv~ayLm~~ 200 (547)
T PRK12361 186 RGRSVLVLAAYLLCK 200 (547)
T ss_pred CCcHHHHHHHHHHHh
Confidence 4 4444 45666544
No 74
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=90.81 E-value=0.41 Score=31.70 Aligned_cols=80 Identities=16% Similarity=0.209 Sum_probs=42.3
Q ss_pred CC-eEEecCChHHH-hcCCCCCCceeCeeccccCCCCCCCC-hHHHHHHHhhccCCCcEEEEcCCCc-ch-HHHHHHHHH
Q 032698 43 GY-GYLDVRTAEEF-KEGHVDAAKIFNIPYMFNTPEGRVKN-PDFLKKVRSLCKEEDRLVVGCQSGA-RS-LHATADLLG 117 (135)
Q Consensus 43 ~~-~iIDvR~~~e~-~~ghIpgA~~~nip~~~~~~~~~~~~-~~~~~~~~~~~~~~~~vvlyC~~G~-~a-~~~~~~l~~ 117 (135)
++ .||+++.+.+. ....-++-.+.++|............ +...+.+.+...++.+|+|+|..|. |+ ..++.+|..
T Consensus 18 ~I~~Vin~~~~~~~~~~~~~~~~~~~~i~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayLm~ 97 (133)
T PF00782_consen 18 GITHVINLQEECPNPYFYKPEGIEYLRIPIDDDPEEPILEHLDQAVEFIENAISEGGKVLVHCKAGLSRSGAVAAAYLMK 97 (133)
T ss_dssp TEEEEEECSSSSSTSHHHTTTTSEEEEEEEESSTTSHGGGGHHHHHHHHHHHHHTTSEEEEEESSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEccCCCcCchhcccCCCEEEEEEecCCCCcchHHHHHHHHHhhhhhhcccceeEEEeCCCcccchHHHHHHHHH
Confidence 64 69999875432 11112233567888542111111110 1233333333467889999999775 44 445555666
Q ss_pred hCCCc
Q 032698 118 AVSFR 122 (135)
Q Consensus 118 ~gG~~ 122 (135)
..|.+
T Consensus 98 ~~~~~ 102 (133)
T PF00782_consen 98 KNGMS 102 (133)
T ss_dssp HHTSS
T ss_pred HcCCC
Confidence 66654
No 75
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=82.34 E-value=14 Score=27.81 Aligned_cols=30 Identities=23% Similarity=0.386 Sum_probs=19.1
Q ss_pred ccCCCcEEEEcCCC-cchHH-HHHHHHHhCCCc
Q 032698 92 CKEEDRLVVGCQSG-ARSLH-ATADLLGAVSFR 122 (135)
Q Consensus 92 ~~~~~~vvlyC~~G-~~a~~-~~~~l~~~gG~~ 122 (135)
+.++.+|+|.|..| +|+.. ++.+|.+ .|++
T Consensus 167 l~~g~~VaVHC~AGlGRTGtl~AayLI~-~Gms 198 (241)
T PTZ00393 167 IKNNRAVAVHCVAGLGRAPVLASIVLIE-FGMD 198 (241)
T ss_pred HhcCCeEEEECCCCCCHHHHHHHHHHHH-cCCC
Confidence 45788999999965 44444 4445545 4653
No 76
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=79.59 E-value=7.7 Score=28.55 Aligned_cols=28 Identities=25% Similarity=0.296 Sum_probs=24.3
Q ss_pred CCcEEEEcCCCcchHHHHHHHHHhCCCc
Q 032698 95 EDRLVVGCQSGARSLHATADLLGAVSFR 122 (135)
Q Consensus 95 ~~~vvlyC~~G~~a~~~~~~l~~~gG~~ 122 (135)
.+..++||.....+...+..|.+..||.
T Consensus 147 ~~~~v~vagDD~~Ak~~v~~L~~~iG~~ 174 (211)
T COG2085 147 GRRDVLVAGDDAEAKAVVAELAEDIGFR 174 (211)
T ss_pred CceeEEEecCcHHHHHHHHHHHHhcCcc
Confidence 5778999999888888888888888987
No 77
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=78.96 E-value=0.95 Score=37.08 Aligned_cols=25 Identities=32% Similarity=0.691 Sum_probs=22.5
Q ss_pred CeEEecCChHHHhcCCCCCCceeCeec
Q 032698 44 YGYLDVRTAEEFKEGHVDAAKIFNIPY 70 (135)
Q Consensus 44 ~~iIDvR~~~e~~~ghIpgA~~~nip~ 70 (135)
+.|||+|+.++|+.||+-.| +|++-
T Consensus 327 FFiVDcRpaeqynaGHlsta--FhlDc 351 (669)
T KOG3636|consen 327 FFIVDCRPAEQYNAGHLSTA--FHLDC 351 (669)
T ss_pred EEEEeccchhhcccccchhh--hcccH
Confidence 46999999999999999988 88865
No 78
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=78.56 E-value=3.7 Score=29.10 Aligned_cols=39 Identities=23% Similarity=0.280 Sum_probs=23.6
Q ss_pred HHHHHHhhccCCCcEEEEcCCC-cchH-HHHHHHHHhCCCc
Q 032698 84 FLKKVRSLCKEEDRLVVGCQSG-ARSL-HATADLLGAVSFR 122 (135)
Q Consensus 84 ~~~~~~~~~~~~~~vvlyC~~G-~~a~-~~~~~l~~~gG~~ 122 (135)
+...+.....++++||+.|..| +|+. -+++||+..+|..
T Consensus 94 ~v~~i~~~~~~g~kVvVHC~~GigRSgtviaA~lm~~~~~~ 134 (180)
T COG2453 94 IVDFIEEALSKGKKVVVHCQGGIGRSGTVIAAYLMLYGGLS 134 (180)
T ss_pred HHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHHHcCCC
Confidence 3334444456778999999965 3444 4454676664443
No 79
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=77.97 E-value=11 Score=29.70 Aligned_cols=63 Identities=17% Similarity=0.095 Sum_probs=38.1
Q ss_pred eCHHHHHHHhhC-CCeEEecCChHHHhcCCCCCCceeCeeccccCCCCCCCChHHHHHHHhh---ccCCCcEEEEcCC
Q 032698 31 VDVRAAKNLLES-GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL---CKEEDRLVVGCQS 104 (135)
Q Consensus 31 is~~el~~~l~~-~~~iIDvR~~~e~~~ghIpgA~~~nip~~~~~~~~~~~~~~~~~~~~~~---~~~~~~vvlyC~~ 104 (135)
..-.++...+.+ +..+||+|+..+|. |...|....+-|.+ ..|...+... +++.++|++=|.|
T Consensus 152 sGKT~iL~~L~~~~~~vlDlE~~aehr-GS~fG~~~~~qpsQ----------~~Fe~~l~~~l~~~~~~~~i~vE~Es 218 (345)
T PRK11784 152 SGKTELLQALANAGAQVLDLEGLANHR-GSSFGRLGGPQPSQ----------KDFENLLAEALLKLDPARPIVVEDES 218 (345)
T ss_pred ccHHHHHHHHHhcCCeEEECCchhhhc-cccccCCCCCCcch----------HHHHHHHHHHHHcCCCCCeEEEEecc
Confidence 445566666665 67899999999995 55555522223332 2455544433 3555677777775
No 80
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=77.63 E-value=7.9 Score=27.49 Aligned_cols=27 Identities=22% Similarity=0.389 Sum_probs=15.4
Q ss_pred ccCCCcEEEEcCCC-cchHHH-HHHHHHh
Q 032698 92 CKEEDRLVVGCQSG-ARSLHA-TADLLGA 118 (135)
Q Consensus 92 ~~~~~~vvlyC~~G-~~a~~~-~~~l~~~ 118 (135)
+..+++|+++|.+| +|+..+ +.+|.+.
T Consensus 130 L~~g~~V~vHC~GGlGRtGlvAAcLLl~L 158 (168)
T PF05706_consen 130 LENGRKVLVHCRGGLGRTGLVAACLLLEL 158 (168)
T ss_dssp HHTT--EEEE-SSSSSHHHHHHHHHHHHH
T ss_pred HHcCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 57889999999976 455554 4444444
No 81
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=77.40 E-value=7.3 Score=24.85 Aligned_cols=37 Identities=16% Similarity=0.198 Sum_probs=23.6
Q ss_pred HHHHHHHhhccCCCcEEEEcCCCcch-HHHHHHHHHhCCCce
Q 032698 83 DFLKKVRSLCKEEDRLVVGCQSGARS-LHATADLLGAVSFRL 123 (135)
Q Consensus 83 ~~~~~~~~~~~~~~~vvlyC~~G~~a-~~~~~~l~~~gG~~~ 123 (135)
++.+.+.+ .++++++..+++.++ ...+..|.+ .||.+
T Consensus 21 e~l~~L~~---~g~~~~~lTNns~~s~~~~~~~L~~-~Gi~~ 58 (101)
T PF13344_consen 21 EALDALRE---RGKPVVFLTNNSSRSREEYAKKLKK-LGIPV 58 (101)
T ss_dssp HHHHHHHH---TTSEEEEEES-SSS-HHHHHHHHHH-TTTT-
T ss_pred HHHHHHHH---cCCCEEEEeCCCCCCHHHHHHHHHh-cCcCC
Confidence 44444444 488999999977666 677777744 58874
No 82
>cd03423 SirA SirA (also known as UvrY, and YhhP) belongs to a family of two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is thought to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=72.95 E-value=12 Score=22.07 Aligned_cols=41 Identities=22% Similarity=0.117 Sum_probs=26.3
Q ss_pred HHHHHHHhhccCCCcEEEEcCCCcchHHHHHHHHHhCCCceEe
Q 032698 83 DFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAVSFRLRF 125 (135)
Q Consensus 83 ~~~~~~~~~~~~~~~vvlyC~~G~~a~~~~~~l~~~gG~~~~~ 125 (135)
+....+.++ ..+..+.+.............|..+ .||++..
T Consensus 15 ~~k~~l~~l-~~G~~l~V~~dd~~s~~di~~~~~~-~g~~~~~ 55 (69)
T cd03423 15 MLHKKVRKM-KPGDTLLVLATDPSTTRDIPKFCTF-LGHELLA 55 (69)
T ss_pred HHHHHHHcC-CCCCEEEEEeCCCchHHHHHHHHHH-cCCEEEE
Confidence 444555555 6777776666656666666776655 4888763
No 83
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=72.15 E-value=5.7 Score=30.30 Aligned_cols=30 Identities=13% Similarity=0.080 Sum_probs=23.8
Q ss_pred cCCCcEEEEcCCCcchHH-HHHHHHHhCCCc
Q 032698 93 KEEDRLVVGCQSGARSLH-ATADLLGAVSFR 122 (135)
Q Consensus 93 ~~~~~vvlyC~~G~~a~~-~~~~l~~~gG~~ 122 (135)
.++.|+++..+++.++.. .++.|.+.+|-.
T Consensus 38 ~~g~~~iflTNn~~~s~~~~~~~L~~~~~~~ 68 (269)
T COG0647 38 AAGKPVIFLTNNSTRSREVVAARLSSLGGVD 68 (269)
T ss_pred HcCCeEEEEeCCCCCCHHHHHHHHHhhcCCC
Confidence 458899999998888877 777777767764
No 84
>PRK11018 hypothetical protein; Provisional
Probab=70.71 E-value=21 Score=21.67 Aligned_cols=41 Identities=15% Similarity=0.061 Sum_probs=27.4
Q ss_pred HHHHHHHhhccCCCcEEEEcCCCcchHHHHHHHHHhCCCceEe
Q 032698 83 DFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAVSFRLRF 125 (135)
Q Consensus 83 ~~~~~~~~~~~~~~~vvlyC~~G~~a~~~~~~l~~~gG~~~~~ 125 (135)
.....+.++ ..+..+.+.++..........++.+ .||++..
T Consensus 24 ~~kk~l~~l-~~G~~L~V~~d~~~a~~di~~~~~~-~G~~v~~ 64 (78)
T PRK11018 24 ATLEALPQL-KKGEILEVVSDCPQSINNIPLDARN-HGYTVLD 64 (78)
T ss_pred HHHHHHHhC-CCCCEEEEEeCCccHHHHHHHHHHH-cCCEEEE
Confidence 555666665 7788777777766666666666655 5888753
No 85
>cd03422 YedF YedF is a bacterial SirA-like protein of unknown function. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=70.01 E-value=20 Score=21.13 Aligned_cols=41 Identities=17% Similarity=0.092 Sum_probs=27.7
Q ss_pred HHHHHHHhhccCCCcEEEEcCCCcchHHHHHHHHHhCCCceEe
Q 032698 83 DFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAVSFRLRF 125 (135)
Q Consensus 83 ~~~~~~~~~~~~~~~vvlyC~~G~~a~~~~~~l~~~gG~~~~~ 125 (135)
+....+.++ ..+..+.+.++........-.++. ..||++..
T Consensus 15 ~~kkal~~l-~~G~~l~V~~d~~~s~~ni~~~~~-~~g~~v~~ 55 (69)
T cd03422 15 ATLEALPSL-KPGEILEVISDCPQSINNIPIDAR-NHGYKVLA 55 (69)
T ss_pred HHHHHHHcC-CCCCEEEEEecCchHHHHHHHHHH-HcCCEEEE
Confidence 555566665 778877777776666666666665 45998764
No 86
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=69.37 E-value=7.4 Score=24.70 Aligned_cols=29 Identities=10% Similarity=0.226 Sum_probs=20.7
Q ss_pred CCcEEEEcCCCcchHHHHHHHHH---hCCCce
Q 032698 95 EDRLVVGCQSGARSLHATADLLG---AVSFRL 123 (135)
Q Consensus 95 ~~~vvlyC~~G~~a~~~~~~l~~---~gG~~~ 123 (135)
.++|++.|++|..++..+..+.+ ..|++.
T Consensus 3 ~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~ 34 (95)
T TIGR00853 3 ETNILLLCAAGMSTSLLVNKMNKAAEEYGVPV 34 (95)
T ss_pred ccEEEEECCCchhHHHHHHHHHHHHHHCCCcE
Confidence 46799999999887777766553 346653
No 87
>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=66.19 E-value=11 Score=30.42 Aligned_cols=38 Identities=24% Similarity=0.214 Sum_probs=28.6
Q ss_pred HHHHHHHhhccCCCcEEEEcCCCcchHHHHHHHHHhCCC
Q 032698 83 DFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAVSF 121 (135)
Q Consensus 83 ~~~~~~~~~~~~~~~vvlyC~~G~~a~~~~~~l~~~gG~ 121 (135)
++.+.+.+..+ +..-|++|++|..+.++|-.+.+..++
T Consensus 88 ~la~~L~~~s~-~~d~vff~NSGaEA~EaAiKlARk~~~ 125 (404)
T COG4992 88 ELAEKLVELSP-FADRVFFCNSGAEANEAALKLARKYTG 125 (404)
T ss_pred HHHHHHHhhCc-cccEEEEcCCcHHHHHHHHHHHHHHcC
Confidence 45555555523 456799999999999999999877665
No 88
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=66.06 E-value=48 Score=24.04 Aligned_cols=33 Identities=30% Similarity=0.606 Sum_probs=25.5
Q ss_pred eCHHHHHHHhhCCCeEEecCChHHHhcCCCCCCceeCeec
Q 032698 31 VDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPY 70 (135)
Q Consensus 31 is~~el~~~l~~~~~iIDvR~~~e~~~ghIpgA~~~nip~ 70 (135)
|+.+|..+.+..+.-||||.+|.| |.+ || |+|+
T Consensus 8 in~eEA~eAieGGAdIiDVKNP~E---GSL-GA---NFPW 40 (235)
T COG1891 8 INREEAIEAIEGGADIIDVKNPAE---GSL-GA---NFPW 40 (235)
T ss_pred CCHHHHHHHhhCCCceEeccCccc---Ccc-cC---CChH
Confidence 678888888888889999999884 333 34 7777
No 89
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=66.05 E-value=8.8 Score=24.72 Aligned_cols=26 Identities=19% Similarity=0.178 Sum_probs=19.0
Q ss_pred cEEEEcCCCcchHHHHHHHHH---hCCCc
Q 032698 97 RLVVGCQSGARSLHATADLLG---AVSFR 122 (135)
Q Consensus 97 ~vvlyC~~G~~a~~~~~~l~~---~gG~~ 122 (135)
+|++.|++|..+..++..+.+ .-|..
T Consensus 2 ~Ill~C~~GaSSs~la~km~~~a~~~gi~ 30 (99)
T cd05565 2 NVLVLCAGGGTSGLLANALNKGAKERGVP 30 (99)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCc
Confidence 488999999888877776653 34655
No 90
>COG0425 SirA Predicted redox protein, regulator of disulfide bond formation [Posttranslational modification, protein turnover, chaperones]
Probab=65.54 E-value=29 Score=21.23 Aligned_cols=41 Identities=20% Similarity=0.009 Sum_probs=29.4
Q ss_pred HHHHHHHhhccCCCcEEEEcCCCcchHHHHHHHHHhCCCceE
Q 032698 83 DFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAVSFRLR 124 (135)
Q Consensus 83 ~~~~~~~~~~~~~~~vvlyC~~G~~a~~~~~~l~~~gG~~~~ 124 (135)
+....+.++ .++..+-+.+.....-...-.|..+.+|++..
T Consensus 21 ~~kk~l~~m-~~Ge~LeV~~ddp~~~~dIp~~~~~~~~~~ll 61 (78)
T COG0425 21 ETKKALAKL-KPGEILEVIADDPAAKEDIPAWAKKEGGHELL 61 (78)
T ss_pred HHHHHHHcC-CCCCEEEEEecCcchHHHHHHHHHHcCCcEEE
Confidence 555666666 88888888887666666777777778887743
No 91
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=65.47 E-value=10 Score=26.49 Aligned_cols=40 Identities=20% Similarity=0.402 Sum_probs=25.6
Q ss_pred HHHHHhhc--cCCCcEEEEcCCC---cchHHHHHHHHHhCCCceEe
Q 032698 85 LKKVRSLC--KEEDRLVVGCQSG---ARSLHATADLLGAVSFRLRF 125 (135)
Q Consensus 85 ~~~~~~~~--~~~~~vvlyC~~G---~~a~~~~~~l~~~gG~~~~~ 125 (135)
.+.+...+ .+..+|++.|.+| ..+-.++++|.+. |+++..
T Consensus 13 a~~i~~~~~~~~~~~v~il~G~GnNGgDgl~~AR~L~~~-G~~V~v 57 (169)
T PF03853_consen 13 AELIRKLFGSPKGPRVLILCGPGNNGGDGLVAARHLANR-GYNVTV 57 (169)
T ss_dssp HHHHHHHSTCCTT-EEEEEE-SSHHHHHHHHHHHHHHHT-TCEEEE
T ss_pred HHHHHHHhcccCCCeEEEEECCCCChHHHHHHHHHHHHC-CCeEEE
Confidence 34444444 6788899999965 4566777877665 787655
No 92
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=65.01 E-value=8.8 Score=24.90 Aligned_cols=29 Identities=10% Similarity=0.167 Sum_probs=20.6
Q ss_pred CcEEEEcCCCcchHHHHHHHHH---hCCCceE
Q 032698 96 DRLVVGCQSGARSLHATADLLG---AVSFRLR 124 (135)
Q Consensus 96 ~~vvlyC~~G~~a~~~~~~l~~---~gG~~~~ 124 (135)
++|++.|++|..++.++..+.+ .-|++..
T Consensus 2 kkILlvCg~G~STSlla~k~k~~~~e~gi~~~ 33 (104)
T PRK09590 2 KKALIICAAGMSSSMMAKKTTEYLKEQGKDIE 33 (104)
T ss_pred cEEEEECCCchHHHHHHHHHHHHHHHCCCceE
Confidence 3689999999988777766653 3466543
No 93
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=62.68 E-value=8.5 Score=24.64 Aligned_cols=22 Identities=32% Similarity=0.321 Sum_probs=13.1
Q ss_pred CCchhhHHHHHHHHHHHHHHhhh
Q 032698 1 MGVSRNWVTFLRGLFLLLLICRS 23 (135)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~ 23 (135)
|+ |+.++....++++++++++.
T Consensus 1 Ma-SK~~llL~l~LA~lLlisSe 22 (95)
T PF07172_consen 1 MA-SKAFLLLGLLLAALLLISSE 22 (95)
T ss_pred Cc-hhHHHHHHHHHHHHHHHHhh
Confidence 55 67766666666665555543
No 94
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=62.37 E-value=13 Score=24.10 Aligned_cols=21 Identities=10% Similarity=0.262 Sum_probs=17.3
Q ss_pred CcEEEEcCCCcchHHHHHHHH
Q 032698 96 DRLVVGCQSGARSLHATADLL 116 (135)
Q Consensus 96 ~~vvlyC~~G~~a~~~~~~l~ 116 (135)
++|++.|++|..++-.+..+.
T Consensus 4 kkIllvC~~G~sTSll~~km~ 24 (106)
T PRK10499 4 KHIYLFCSAGMSTSLLVSKMR 24 (106)
T ss_pred CEEEEECCCCccHHHHHHHHH
Confidence 579999999999888885454
No 95
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=62.12 E-value=11 Score=23.82 Aligned_cols=21 Identities=10% Similarity=0.319 Sum_probs=16.5
Q ss_pred cEEEEcCCCcchHHHHHHHHH
Q 032698 97 RLVVGCQSGARSLHATADLLG 117 (135)
Q Consensus 97 ~vvlyC~~G~~a~~~~~~l~~ 117 (135)
+|++.|++|..++.++..+.+
T Consensus 1 kIl~~Cg~G~sTS~~~~ki~~ 21 (96)
T cd05564 1 KILLVCSAGMSTSILVKKMKK 21 (96)
T ss_pred CEEEEcCCCchHHHHHHHHHH
Confidence 488999999988877766653
No 96
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=61.47 E-value=25 Score=20.44 Aligned_cols=39 Identities=13% Similarity=0.015 Sum_probs=26.2
Q ss_pred HHHHHHHhhccCCCcEEEEcCCCcchHHHHHHHHHhCCCce
Q 032698 83 DFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAVSFRL 123 (135)
Q Consensus 83 ~~~~~~~~~~~~~~~vvlyC~~G~~a~~~~~~l~~~gG~~~ 123 (135)
.....+.++ ++++.+.+..+..........++.+. |+++
T Consensus 16 ~~~~~l~~l-~~G~~l~v~~d~~~~~~di~~~~~~~-g~~~ 54 (70)
T PF01206_consen 16 KAKKALKEL-PPGEVLEVLVDDPAAVEDIPRWCEEN-GYEV 54 (70)
T ss_dssp HHHHHHHTS-GTT-EEEEEESSTTHHHHHHHHHHHH-TEEE
T ss_pred HHHHHHHhc-CCCCEEEEEECCccHHHHHHHHHHHC-CCEE
Confidence 455566665 78888877777666667777777665 7763
No 97
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=60.79 E-value=14 Score=25.92 Aligned_cols=82 Identities=16% Similarity=0.263 Sum_probs=33.9
Q ss_pred HhhC-C-CeEEecCCh---HH---HhcCCCCCCceeCeeccccCC-CCCCCChHHHHHHHhhc-cCCCcEEEEcCCCc-c
Q 032698 39 LLES-G-YGYLDVRTA---EE---FKEGHVDAAKIFNIPYMFNTP-EGRVKNPDFLKKVRSLC-KEEDRLVVGCQSGA-R 107 (135)
Q Consensus 39 ~l~~-~-~~iIDvR~~---~e---~~~ghIpgA~~~nip~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~vvlyC~~G~-~ 107 (135)
.++. + .+||.+|++ .+ |.+.+-- ..++++...... ........+.+.+.-++ +.+.||++.|.+|. |
T Consensus 27 fL~~L~LKTII~L~~e~~~~~~~~f~~~~~I--~l~~~~~~~~~~~~~~~~~~~v~~aL~~ild~~n~PvLiHC~~G~~r 104 (164)
T PF03162_consen 27 FLERLGLKTIINLRPEPPSQDFLEFAEENGI--KLIHIPMSSSKDPWVPISEEQVAEALEIILDPRNYPVLIHCNHGKDR 104 (164)
T ss_dssp HHHHHT-SEEEE--SS---HHHHHHHHHTT---EEEE-------GGG----HHHHHHHHHHHH-GGG-SEEEE-SSSSSH
T ss_pred HHHHCCCceEEEecCCCCCHHHHHHHhhcCc--eEEEeccccccCccccCCHHHHHHHHHHHhCCCCCCEEEEeCCCCcc
Confidence 3443 5 489999864 22 2222222 335565531111 11122223444443333 35789999999764 5
Q ss_pred hHHHHHHHHHhCCCc
Q 032698 108 SLHATADLLGAVSFR 122 (135)
Q Consensus 108 a~~~~~~l~~~gG~~ 122 (135)
...++.-+++.-|-.
T Consensus 105 TG~vvg~lRk~Q~W~ 119 (164)
T PF03162_consen 105 TGLVVGCLRKLQGWS 119 (164)
T ss_dssp HHHHHHHHHHHTTB-
T ss_pred hhhHHHHHHHHcCCC
Confidence 666666666554443
No 98
>KOG1712 consensus Adenine phosphoribosyl transferases [Nucleotide transport and metabolism]
Probab=60.45 E-value=12 Score=26.61 Aligned_cols=30 Identities=27% Similarity=0.100 Sum_probs=24.3
Q ss_pred ccCCCcEEEEcC---CCcchHHHHHHHHHhCCC
Q 032698 92 CKEEDRLVVGCQ---SGARSLHATADLLGAVSF 121 (135)
Q Consensus 92 ~~~~~~vvlyC~---~G~~a~~~~~~l~~~gG~ 121 (135)
++++++++++++ +|+....+..++.+.|+.
T Consensus 119 i~~g~rvvvVDDllATGGTl~AA~~Ll~r~ga~ 151 (183)
T KOG1712|consen 119 IKPGQRVVVVDDLLATGGTLAAATELLERVGAE 151 (183)
T ss_pred cCCCCeEEEEechhhcCccHHHHHHHHHHhccE
Confidence 488999999987 788888888877777654
No 99
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=60.21 E-value=6.6 Score=30.83 Aligned_cols=37 Identities=14% Similarity=0.011 Sum_probs=28.4
Q ss_pred CCcceeCHHHHHHHhh-------CCCeEEecCChHHHhcCCCCCC
Q 032698 26 AEVITVDVRAAKNLLE-------SGYGYLDVRTAEEFKEGHVDAA 63 (135)
Q Consensus 26 ~~~~~is~~el~~~l~-------~~~~iIDvR~~~e~~~ghIpgA 63 (135)
.....++++++.+.++ .+..+||+|++. |.-.++|+-
T Consensus 274 ~~~~~i~~~~~~~~l~~~~~~~~~~~~ll~vr~~~-~~~~~~~~g 317 (339)
T PRK07688 274 PHKEEYDLEELAELLRDRGLDVNVNPYLLSFSLEE-KRLVLFKDG 317 (339)
T ss_pred CCcCccCHHHHHHHHHhcccccCCCcEEEEEecCC-eEEEEEcCC
Confidence 3456799999999883 246899999987 887777754
No 100
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=58.86 E-value=13 Score=22.64 Aligned_cols=16 Identities=25% Similarity=0.453 Sum_probs=12.8
Q ss_pred cEEEEcCCCcchHHHH
Q 032698 97 RLVVGCQSGARSLHAT 112 (135)
Q Consensus 97 ~vvlyC~~G~~a~~~~ 112 (135)
+|++.|++|..++..+
T Consensus 1 kIlvvC~~Gi~TS~~~ 16 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMV 16 (90)
T ss_dssp EEEEEESSSSHHHHHH
T ss_pred CEEEECCChHHHHHHH
Confidence 4899999998766666
No 101
>cd03420 SirA_RHOD_Pry_redox SirA_RHOD_Pry_redox. SirA-like domain located within a multidomain protein of unknown function. Other domains include RHOD (rhodanese homology domain), and Pry_redox (pyridine nucleotide-disulphide oxidoreductase) as well as a C-terminal domain that corresponds to COG2210. This fold is referred to as a two-layered alpha/beta sandwich, structurally similar to that of translation initiation factor 3.
Probab=58.64 E-value=35 Score=20.02 Aligned_cols=41 Identities=17% Similarity=0.101 Sum_probs=27.0
Q ss_pred HHHHHHHhhccCCCcEEEEcCCCcchHHHHHHHHHhCCCceEe
Q 032698 83 DFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAVSFRLRF 125 (135)
Q Consensus 83 ~~~~~~~~~~~~~~~vvlyC~~G~~a~~~~~~l~~~gG~~~~~ 125 (135)
.....+.++ .++..+.+.++..........|..+ .||+...
T Consensus 15 ~~kkal~~l-~~G~~l~V~~d~~~a~~di~~~~~~-~G~~~~~ 55 (69)
T cd03420 15 KLKKEIDKL-QDGEQLEVKASDPGFARDAQAWCKS-TGNTLIS 55 (69)
T ss_pred HHHHHHHcC-CCCCEEEEEECCccHHHHHHHHHHH-cCCEEEE
Confidence 455556555 6777777777766666666776655 4888753
No 102
>PF06897 DUF1269: Protein of unknown function (DUF1269); InterPro: IPR009200 There are currently no experimental data for members of this group or their homologues. However, these proteins are predicted to contain two or more transmembrane segments.
Probab=57.81 E-value=27 Score=22.57 Aligned_cols=50 Identities=22% Similarity=0.121 Sum_probs=33.7
Q ss_pred HHHHHHHhhccCCCcEEEEcCCCcchHHHHHHHHHhCCCceEeecCCCcc
Q 032698 83 DFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAVSFRLRFQFSPTKE 132 (135)
Q Consensus 83 ~~~~~~~~~~~~~~~vvlyC~~G~~a~~~~~~l~~~gG~~~~~~~~~~~~ 132 (135)
++.+.+.+.+++++..++.--+......+.+.+.+.+|--.+..+|...|
T Consensus 43 ~~~~ev~~~L~~GssAl~~lv~~~~~d~v~~~l~~~gg~v~~t~ls~~~e 92 (102)
T PF06897_consen 43 EFIKEVGEALKPGSSALFLLVDEATEDKVDAALRKFGGKVLRTSLSEEDE 92 (102)
T ss_pred HHHHHHHhhcCCCceEEEEEeccCCHHHHHHHHHhcCCEEEeccCCHHHH
Confidence 66677777667776644433344566777777888877777788877655
No 103
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=57.59 E-value=42 Score=24.54 Aligned_cols=35 Identities=23% Similarity=0.363 Sum_probs=25.4
Q ss_pred CCcEEEEcCC---CcchHHHHHHHHHhCCCceEeecCCC
Q 032698 95 EDRLVVGCQS---GARSLHATADLLGAVSFRLRFQFSPT 130 (135)
Q Consensus 95 ~~~vvlyC~~---G~~a~~~~~~l~~~gG~~~~~~~~~~ 130 (135)
..+|+++|.+ |+.+-.++++|... |+.+..-+.+.
T Consensus 49 ~~~v~vlcG~GnNGGDG~VaAR~L~~~-G~~V~v~~~~~ 86 (203)
T COG0062 49 ARRVLVLCGPGNNGGDGLVAARHLKAA-GYAVTVLLLGD 86 (203)
T ss_pred CCEEEEEECCCCccHHHHHHHHHHHhC-CCceEEEEeCC
Confidence 5679999995 45677888888776 68776666443
No 104
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=55.64 E-value=19 Score=22.13 Aligned_cols=16 Identities=25% Similarity=0.563 Sum_probs=12.4
Q ss_pred CcEEEEcCCCcchHHH
Q 032698 96 DRLVVGCQSGARSLHA 111 (135)
Q Consensus 96 ~~vvlyC~~G~~a~~~ 111 (135)
++|+++|++|.-++..
T Consensus 1 ~kilvvCg~G~gtS~m 16 (87)
T cd05567 1 KKIVFACDAGMGSSAM 16 (87)
T ss_pred CEEEEECCCCccHHHH
Confidence 3689999998876665
No 105
>PLN02645 phosphoglycolate phosphatase
Probab=55.48 E-value=62 Score=24.83 Aligned_cols=73 Identities=12% Similarity=0.164 Sum_probs=41.1
Q ss_pred cceeCHHHHHHHhhC-CCeEEecCChHHHhcCCCCCCceeCeeccccCCCCCCCChHHHHHHHhhccCCCcEEEEcCCCc
Q 032698 28 VITVDVRAAKNLLES-GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSGA 106 (135)
Q Consensus 28 ~~~is~~el~~~l~~-~~~iIDvR~~~e~~~ghIpgA~~~nip~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvlyC~~G~ 106 (135)
....+.+++.+++++ +..++|+-.----...-+||+ .+..+.+. ..++++++..+++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~D~DGtl~~~~~~~~ga------------------~e~l~~lr---~~g~~~~~~TN~~~ 71 (311)
T PLN02645 13 AQLLTLENADELIDSVETFIFDCDGVIWKGDKLIEGV------------------PETLDMLR---SMGKKLVFVTNNST 71 (311)
T ss_pred cccCCHHHHHHHHHhCCEEEEeCcCCeEeCCccCcCH------------------HHHHHHHH---HCCCEEEEEeCCCC
Confidence 456778888888876 568889854221111123444 13333332 35777888777554
Q ss_pred c-hHHHHHHHHHhCCCc
Q 032698 107 R-SLHATADLLGAVSFR 122 (135)
Q Consensus 107 ~-a~~~~~~l~~~gG~~ 122 (135)
+ .......|.+ .||.
T Consensus 72 ~~~~~~~~~l~~-lGi~ 87 (311)
T PLN02645 72 KSRAQYGKKFES-LGLN 87 (311)
T ss_pred CCHHHHHHHHHH-CCCC
Confidence 4 3455555544 4664
No 106
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=55.39 E-value=31 Score=28.40 Aligned_cols=34 Identities=18% Similarity=0.310 Sum_probs=24.0
Q ss_pred CCcEEEEcCC---CcchHHHHHHHHHhCCCceEeecCC
Q 032698 95 EDRLVVGCQS---GARSLHATADLLGAVSFRLRFQFSP 129 (135)
Q Consensus 95 ~~~vvlyC~~---G~~a~~~~~~l~~~gG~~~~~~~~~ 129 (135)
+++|+++|.. |+.+-.+|++|... |+++..-+.+
T Consensus 59 ~~~VlVlcG~GNNGGDGlv~AR~L~~~-G~~V~v~~~~ 95 (462)
T PLN03049 59 YRRVLALCGPGNNGGDGLVAARHLHHF-GYKPSICYPK 95 (462)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHC-CCceEEEEEC
Confidence 3679999995 45566788877665 7887665543
No 107
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=54.82 E-value=18 Score=23.47 Aligned_cols=24 Identities=13% Similarity=0.333 Sum_probs=19.6
Q ss_pred CcEEEEcCCCcchHHHHHHHHHhC
Q 032698 96 DRLVVGCQSGARSLHATADLLGAV 119 (135)
Q Consensus 96 ~~vvlyC~~G~~a~~~~~~l~~~g 119 (135)
++|.++|+.|...+-.+....+..
T Consensus 2 k~IlLvC~aGmSTSlLV~Km~~aA 25 (102)
T COG1440 2 KKILLVCAAGMSTSLLVTKMKKAA 25 (102)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHH
Confidence 468999999999888888777553
No 108
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=54.09 E-value=70 Score=24.94 Aligned_cols=67 Identities=18% Similarity=0.252 Sum_probs=40.0
Q ss_pred HHHHHHhhC-CCeEEecCChHHHhcCCCCCCceeCeeccccCCCCCCCChHHHHHHHhhccCCCcEEEEcCCCcch-HHH
Q 032698 34 RAAKNLLES-GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSGARS-LHA 111 (135)
Q Consensus 34 ~el~~~l~~-~~~iIDvR~~~e~~~ghIpgA~~~nip~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvlyC~~G~~a-~~~ 111 (135)
+++.++++. +..|.|+-..-=.....|||+ ++..+.+..+ ++.+++..+...++ ...
T Consensus 13 ~~~~e~l~~~DtfifDcDGVlW~g~~~ipGs------------------~e~l~~L~~~---gK~i~fvTNNStksr~~y 71 (306)
T KOG2882|consen 13 EEARELLDSFDTFIFDCDGVLWLGEKPIPGS------------------PEALNLLKSL---GKQIIFVTNNSTKSREQY 71 (306)
T ss_pred HHHHHHHhhcCEEEEcCCcceeecCCCCCCh------------------HHHHHHHHHc---CCcEEEEeCCCcchHHHH
Confidence 677788887 678889876443345667777 1444555544 56677776644443 334
Q ss_pred HHHHHHhCCCc
Q 032698 112 TADLLGAVSFR 122 (135)
Q Consensus 112 ~~~l~~~gG~~ 122 (135)
...+.+. ||.
T Consensus 72 ~kK~~~l-G~~ 81 (306)
T KOG2882|consen 72 MKKFAKL-GFN 81 (306)
T ss_pred HHHHHHh-Ccc
Confidence 4444444 665
No 109
>PRK10565 putative carbohydrate kinase; Provisional
Probab=52.09 E-value=40 Score=28.04 Aligned_cols=34 Identities=12% Similarity=0.149 Sum_probs=23.8
Q ss_pred cCCCcEEEEcCC---CcchHHHHHHHHHhCCCceEeec
Q 032698 93 KEEDRLVVGCQS---GARSLHATADLLGAVSFRLRFQF 127 (135)
Q Consensus 93 ~~~~~vvlyC~~---G~~a~~~~~~l~~~gG~~~~~~~ 127 (135)
++.++|+++|.. |+.+-.++++|.+. |+++..-+
T Consensus 58 ~~~~~v~vl~G~GNNGGDG~v~AR~L~~~-G~~V~v~~ 94 (508)
T PRK10565 58 PDARHWLVLCGHGNNGGDGYVVARLAQAA-GIDVTLLA 94 (508)
T ss_pred CCCCeEEEEEcCCCchHHHHHHHHHHHHC-CCceEEEE
Confidence 455679999985 55677788888765 77764443
No 110
>TIGR00197 yjeF_nterm yjeF N-terminal region. This model is built on yeast protein YNL200C and the N-terminal regions of E. coli yjeF and its orthologs in various species. The C-terminal region of yjeF and its orthologs shows similarity to hydroxyethylthiazole kinase (thiM) and other enzymes involved in thiamine biosynthesis. Yeast YKL151C and B. subtilis yxkO match the yjeF C-terminal domain but lack this region.
Probab=51.16 E-value=70 Score=23.07 Aligned_cols=31 Identities=13% Similarity=0.315 Sum_probs=22.6
Q ss_pred ccCCCcEEEEcCC---CcchHHHHHHHHHhCCCce
Q 032698 92 CKEEDRLVVGCQS---GARSLHATADLLGAVSFRL 123 (135)
Q Consensus 92 ~~~~~~vvlyC~~---G~~a~~~~~~l~~~gG~~~ 123 (135)
+++.++|+++|.. |+.+-.++++|.+ .|.++
T Consensus 42 ~~~~~~v~vl~G~GNNGGDGlv~AR~L~~-~~v~V 75 (205)
T TIGR00197 42 FPLAGHVIIFCGPGNNGGDGFVVARHLKG-FGVEV 75 (205)
T ss_pred cCCCCeEEEEECCCCCccHHHHHHHHHHh-CCCEE
Confidence 3456789999984 5677888888877 46663
No 111
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=50.92 E-value=7.6 Score=29.89 Aligned_cols=37 Identities=24% Similarity=0.311 Sum_probs=27.5
Q ss_pred eeCHHHHHHHhhC-CCeEEecCChHHHhcCCCCCCceeCeec
Q 032698 30 TVDVRAAKNLLES-GYGYLDVRTAEEFKEGHVDAAKIFNIPY 70 (135)
Q Consensus 30 ~is~~el~~~l~~-~~~iIDvR~~~e~~~ghIpgA~~~nip~ 70 (135)
.++++++...+.. +..++|+|+ +..||.+|..+.+|.
T Consensus 5 ~~s~~wlnr~l~~~nllllDCRs----es~~i~~A~~valPa 42 (343)
T KOG1717|consen 5 SKSVAWLNRQLELGNLLLLDCRS----ESSHIESAINVALPA 42 (343)
T ss_pred HHHHHHHHhhcccCceEEEecCC----ccchhhhhhhhcchH
Confidence 3678888888876 578999999 467888884444554
No 112
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=50.35 E-value=9.3 Score=26.22 Aligned_cols=42 Identities=26% Similarity=0.528 Sum_probs=21.8
Q ss_pred CCCCceeCeeccccCCCCCCCCh----HHHHHHHhhccCCCcEEEEcCCCc
Q 032698 60 VDAAKIFNIPYMFNTPEGRVKNP----DFLKKVRSLCKEEDRLVVGCQSGA 106 (135)
Q Consensus 60 IpgA~~~nip~~~~~~~~~~~~~----~~~~~~~~~~~~~~~vvlyC~~G~ 106 (135)
-+|..|+.||.... ..+.+ .|...+..+ +++..+++.|..|.
T Consensus 90 ~~g~~Y~Ripitd~----~~P~~~~iD~fi~~v~~~-p~~~~l~fhC~~G~ 135 (149)
T PF14566_consen 90 GNGLRYYRIPITDH----QAPDPEDIDAFINFVKSL-PKDTWLHFHCQAGR 135 (149)
T ss_dssp HTT-EEEEEEE-TT----S---HHHHHHHHHHHHTS--TT-EEEEE-SSSS
T ss_pred cCCceEEEEeCCCc----CCCCHHHHHHHHHHHHhC-CCCCeEEEECCCCC
Confidence 45667888888522 22233 344444444 78888999999664
No 113
>cd00133 PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In the multienzyme PTS complex, EII is a carbohydrate-specific permease consisting of two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. The PTS is found only in bacteria, where it catalyzes the transport and phosphorylation of numerous monosaccharides, disaccharides, polyols, amino sugars, and other sugar derivatives. The four proteins (domains) forming the PTS phosphorylation cascade (EI, HPr, EIIA, and EIIB), can phosphorylate or interact with numerous non-PTS proteins thereby r
Probab=50.13 E-value=22 Score=20.68 Aligned_cols=22 Identities=32% Similarity=0.428 Sum_probs=14.7
Q ss_pred cEEEEcCCC-cchHHHHHHHHHh
Q 032698 97 RLVVGCQSG-ARSLHATADLLGA 118 (135)
Q Consensus 97 ~vvlyC~~G-~~a~~~~~~l~~~ 118 (135)
+++++|++| ..+..+...+.+.
T Consensus 1 ~il~vc~~G~~~s~~l~~~l~~~ 23 (84)
T cd00133 1 KILVVCGSGIGSSSMLAEKLEKA 23 (84)
T ss_pred CEEEECCCcHhHHHHHHHHHHHH
Confidence 478999988 4555555555543
No 114
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=49.09 E-value=84 Score=24.33 Aligned_cols=77 Identities=10% Similarity=0.195 Sum_probs=44.6
Q ss_pred CeEEecCChHHHhcCCC-------CCCceeCeeccccCCCCCCCChHHHHHHHhhcc--CCCcEEEEcCC--CcchHHHH
Q 032698 44 YGYLDVRTAEEFKEGHV-------DAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCK--EEDRLVVGCQS--GARSLHAT 112 (135)
Q Consensus 44 ~~iIDvR~~~e~~~ghI-------pgA~~~nip~~~~~~~~~~~~~~~~~~~~~~~~--~~~~vvlyC~~--G~~a~~~~ 112 (135)
..+|.+..... ||+ -|++.+-+|-. .++.+++.+.+.+... ++.-+|+++++ .......+
T Consensus 162 v~ivEvMGR~~---G~lAl~~~la~gad~iliPE~------~~~~~~l~~~i~~r~~~g~~~~iIvvaEG~~~~~~~~l~ 232 (301)
T TIGR02482 162 AFVIEVMGRHA---GDLALYSGIATGAEIIIIPEF------DYDIDELIQRLKEQHEAGKKHSIIIVAEGNIVGSAKEVA 232 (301)
T ss_pred EEEEEeCCCCH---HHHHHHHHHHcCCCEEEECCC------CCCHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCcHHHHH
Confidence 56888876442 222 13344656642 2333466666655423 33335665555 34566778
Q ss_pred HHHHHhCCCceEeecCC
Q 032698 113 ADLLGAVSFRLRFQFSP 129 (135)
Q Consensus 113 ~~l~~~gG~~~~~~~~~ 129 (135)
+.+.+..|++.|+...|
T Consensus 233 ~~l~~~~g~~~r~~~lG 249 (301)
T TIGR02482 233 KKIEEATGIETRVTVLG 249 (301)
T ss_pred HHHHHhcCCeeEEeecC
Confidence 88888889999987754
No 115
>cd00291 SirA_YedF_YeeD SirA, YedF, and YeeD. Two-layered alpha/beta sandwich domain. SirA (also known as UvrY, and YhhP) belongs to a family of bacterial two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=48.38 E-value=51 Score=18.83 Aligned_cols=41 Identities=15% Similarity=-0.052 Sum_probs=26.1
Q ss_pred HHHHHHHhhccCCCcEEEEcCCCcchHHHHHHHHHhCCCceEe
Q 032698 83 DFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAVSFRLRF 125 (135)
Q Consensus 83 ~~~~~~~~~~~~~~~vvlyC~~G~~a~~~~~~l~~~gG~~~~~ 125 (135)
.....+.++ ..+..+.+..+.+........++.+ .||+...
T Consensus 15 ~~~~~l~~l-~~g~~l~v~~d~~~~~~~i~~~~~~-~g~~~~~ 55 (69)
T cd00291 15 KTKKALEKL-KSGEVLEVLLDDPGAVEDIPAWAKE-TGHEVLE 55 (69)
T ss_pred HHHHHHhcC-CCCCEEEEEecCCcHHHHHHHHHHH-cCCEEEE
Confidence 444455554 7787777777766666666666655 5888543
No 116
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=45.98 E-value=57 Score=27.56 Aligned_cols=32 Identities=19% Similarity=0.331 Sum_probs=22.9
Q ss_pred CcEEEEcCCC---cchHHHHHHHHHhCCCceEeecC
Q 032698 96 DRLVVGCQSG---ARSLHATADLLGAVSFRLRFQFS 128 (135)
Q Consensus 96 ~~vvlyC~~G---~~a~~~~~~l~~~gG~~~~~~~~ 128 (135)
++|+++|..| +.+-.+|++|... |+++..-+.
T Consensus 136 ~~VlVlcGpGNNGGDGLVaAR~L~~~-G~~V~V~~~ 170 (544)
T PLN02918 136 SRVLAICGPGNNGGDGLVAARHLHHF-GYKPFVCYP 170 (544)
T ss_pred CEEEEEECCCcCHHHHHHHHHHHHHC-CCceEEEEc
Confidence 6799999954 5566777877654 888766553
No 117
>TIGR03042 PS_II_psbQ_bact photosystem II protein PsbQ. This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology.
Probab=44.04 E-value=53 Score=22.66 Aligned_cols=37 Identities=22% Similarity=0.199 Sum_probs=21.6
Q ss_pred hhHHHHHHHHHHHHHHhhhc--CCCcceeCHHHHHHHhh
Q 032698 5 RNWVTFLRGLFLLLLICRSS--GAEVITVDVRAAKNLLE 41 (135)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~--~~~~~~is~~el~~~l~ 41 (135)
|+|......+.+.++.+|.. ....+..+|+++.+...
T Consensus 2 r~~~s~~Lv~~~~~Lvsc~~p~~~~p~tysp~~l~~i~~ 40 (142)
T TIGR03042 2 RSLASLLLVLLLTFLVSCSGPAAAVPPTYSPAQLAQIQR 40 (142)
T ss_pred hhHHHHHHHHHHHHHHHcCCCcccCCCCCCHHHHHHHHH
Confidence 44555544444444556663 33356899999877653
No 118
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=42.80 E-value=38 Score=25.39 Aligned_cols=31 Identities=19% Similarity=0.414 Sum_probs=23.3
Q ss_pred CcEEEEcCC---CcchHHHHHHHHHhCCCceEeec
Q 032698 96 DRLVVGCQS---GARSLHATADLLGAVSFRLRFQF 127 (135)
Q Consensus 96 ~~vvlyC~~---G~~a~~~~~~l~~~gG~~~~~~~ 127 (135)
++|+++|.. |+.+-.++++|... |+++..-+
T Consensus 61 ~~V~VlcG~GNNGGDGlv~AR~L~~~-G~~V~v~~ 94 (246)
T PLN03050 61 PRVLLVCGPGNNGGDGLVAARHLAHF-GYEVTVCY 94 (246)
T ss_pred CeEEEEECCCCCchhHHHHHHHHHHC-CCeEEEEE
Confidence 679999984 56677888888765 78866554
No 119
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=42.75 E-value=39 Score=20.51 Aligned_cols=20 Identities=15% Similarity=0.479 Sum_probs=13.5
Q ss_pred cEEEEcCCCcchH-HHHHHHH
Q 032698 97 RLVVGCQSGARSL-HATADLL 116 (135)
Q Consensus 97 ~vvlyC~~G~~a~-~~~~~l~ 116 (135)
+++++|++|..++ .....+.
T Consensus 2 ~ilivC~~G~~tS~~l~~~i~ 22 (89)
T cd05566 2 KILVACGTGVATSTVVASKVK 22 (89)
T ss_pred EEEEECCCCccHHHHHHHHHH
Confidence 5899999988655 4444443
No 120
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=42.03 E-value=25 Score=23.03 Aligned_cols=20 Identities=30% Similarity=0.441 Sum_probs=14.5
Q ss_pred CHHHHHHHhhC-CC-eEEecCC
Q 032698 32 DVRAAKNLLES-GY-GYLDVRT 51 (135)
Q Consensus 32 s~~el~~~l~~-~~-~iIDvR~ 51 (135)
+.+++.+.+.+ ++ ++||||.
T Consensus 1 ~~e~f~~~l~~~~i~~lVDVR~ 22 (122)
T PF04343_consen 1 SIERFYDLLKKNGIRVLVDVRL 22 (122)
T ss_pred CHHHHHHHHHHCCCeEEEEECC
Confidence 35677777765 54 8999994
No 121
>cd03421 SirA_like_N SirA_like_N, a protein of unknown function with an N-terminal SirA-like domain. The SirA, YedF, YeeD protein family is present in bacteria as well as archaea. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=41.97 E-value=68 Score=18.42 Aligned_cols=39 Identities=8% Similarity=0.030 Sum_probs=24.0
Q ss_pred HHHHHHHhhccCCCcEEEEcCCCcchHHHHHHHHHhCCCceE
Q 032698 83 DFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAVSFRLR 124 (135)
Q Consensus 83 ~~~~~~~~~~~~~~~vvlyC~~G~~a~~~~~~l~~~gG~~~~ 124 (135)
.....+ +. ..+..+.+..+..........++.+ .||+..
T Consensus 15 ~~k~al-~~-~~g~~l~v~~d~~~s~~~i~~~~~~-~G~~~~ 53 (67)
T cd03421 15 KTKKAL-EL-EAGGEIEVLVDNEVAKENVSRFAES-RGYEVS 53 (67)
T ss_pred HHHHHH-hc-CCCCEEEEEEcChhHHHHHHHHHHH-cCCEEE
Confidence 444455 44 5666776666655555666676655 488864
No 122
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=39.52 E-value=1.3e+02 Score=23.44 Aligned_cols=80 Identities=13% Similarity=0.125 Sum_probs=44.8
Q ss_pred CeEEecCChHH-Hhc---CCCCCCceeCeeccccCCCCCCCChHHHHHHHhhcc--CCCcEEEEcCCCcchHHHHHHHHH
Q 032698 44 YGYLDVRTAEE-FKE---GHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCK--EEDRLVVGCQSGARSLHATADLLG 117 (135)
Q Consensus 44 ~~iIDvR~~~e-~~~---ghIpgA~~~nip~~~~~~~~~~~~~~~~~~~~~~~~--~~~~vvlyC~~G~~a~~~~~~l~~ 117 (135)
..||.+..... |.. +---|++.+-+|- ..++.+++.+.+.+... ++.-||+++.+-......+..+.+
T Consensus 162 v~ivEvMGR~~G~LA~~~ala~ga~~iliPE------~~~~~~~~~~~i~~~~~~g~~~~vivvaEG~~~~~~l~~~l~~ 235 (317)
T cd00763 162 ISVVEVMGRHCGDIALAAGIAGGAEFIVIPE------AEFDREEVANRIKAGIERGKKHAIVVVAEGVYDVDELAKEIEE 235 (317)
T ss_pred EEEEEeCCCChHHHHHHHHHHcCCCEEEeCC------CCCCHHHHHHHHHHHHHcCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 46888876442 210 0011344466664 23333466666655433 334456666543346677888888
Q ss_pred hCCCceEeecCC
Q 032698 118 AVSFRLRFQFSP 129 (135)
Q Consensus 118 ~gG~~~~~~~~~ 129 (135)
..|++.++...|
T Consensus 236 ~~g~~~r~~~lG 247 (317)
T cd00763 236 ATGFETRATVLG 247 (317)
T ss_pred HhCCCcceeccc
Confidence 889999987654
No 123
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=39.11 E-value=1e+02 Score=22.52 Aligned_cols=28 Identities=7% Similarity=0.038 Sum_probs=13.6
Q ss_pred CCCcEEEEcCCCcchHHHHHHHHHhCCCc
Q 032698 94 EEDRLVVGCQSGARSLHATADLLGAVSFR 122 (135)
Q Consensus 94 ~~~~vvlyC~~G~~a~~~~~~l~~~gG~~ 122 (135)
.+.++++..++..+.......|.+ .|+.
T Consensus 39 ~G~~~~ivTN~~~~~~~~~~~L~~-~gl~ 66 (242)
T TIGR01459 39 QGKPVYFVSNSPRNIFSLHKTLKS-LGIN 66 (242)
T ss_pred CCCEEEEEeCCCCChHHHHHHHHH-CCCC
Confidence 356666666654433333344433 3554
No 124
>PRK15416 lipopolysaccharide core heptose(II)-phosphate phosphatase; Provisional
Probab=39.09 E-value=1.5e+02 Score=21.59 Aligned_cols=84 Identities=11% Similarity=0.033 Sum_probs=47.6
Q ss_pred cCCCcceeCHHHHHHHhhCCCeEEecCChHHHhcCCCCCC--ceeCeeccccCCCCCCCChHHHHHHHhhccCCCc-EEE
Q 032698 24 SGAEVITVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAA--KIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDR-LVV 100 (135)
Q Consensus 24 ~~~~~~~is~~el~~~l~~~~~iIDvR~~~e~~~ghIpgA--~~~nip~~~~~~~~~~~~~~~~~~~~~~~~~~~~-vvl 100 (135)
+...+|+|+.+++.+.-+++..|+=+|.-+- .+.-.+. ... -|.+ +.+. +-...+.+.+....+ ..+
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~L~LiRHGet--~~~~~~~~~sD~-RpLT---erG~----~qA~~lg~~L~~~~~~d~I 104 (201)
T PRK15416 35 SSNGLPRIDNKTLAELAKQHPVVVLFRHAER--CDRSDNQCLSDK-TGIT---VKGT----QDARELGKAFSADIPDYDL 104 (201)
T ss_pred ccCCCccccHHHHHHHhcCCCEEEEEeCccc--cCccCCCCCCCC-CCCC---HHHH----HHHHHHHHHHhCCCCCCEE
Confidence 5567899999999999888888888996542 0111111 000 2221 0000 111222222222222 377
Q ss_pred EcCCCcchHHHHHHHHH
Q 032698 101 GCQSGARSLHATADLLG 117 (135)
Q Consensus 101 yC~~G~~a~~~~~~l~~ 117 (135)
||+.-.|+.+.++.+..
T Consensus 105 ~sSpa~Ra~qTAe~ia~ 121 (201)
T PRK15416 105 YSSNTVRTIQSATWFSA 121 (201)
T ss_pred EECCCHHHHHHHHHHhc
Confidence 99988999999988754
No 125
>PF09992 DUF2233: Predicted periplasmic protein (DUF2233); InterPro: IPR018711 This entry contains proteins that catalyze the second step in the formation of the mannose 6-phosphate targeting signal on lysosomal enzyme oligosaccharides, this is achieved by removing GlcNAc residues from GlcNAc-alpha-P-mannose moieties, which are formed in the first step.; PDB: 3OHG_A.
Probab=36.32 E-value=65 Score=22.13 Aligned_cols=42 Identities=10% Similarity=0.060 Sum_probs=22.4
Q ss_pred ccCCCcEEEEc-C----CCcchHHHHHHHHHhCCCceEeecCCCcccc
Q 032698 92 CKEEDRLVVGC-Q----SGARSLHATADLLGAVSFRLRFQFSPTKEAT 134 (135)
Q Consensus 92 ~~~~~~vvlyC-~----~G~~a~~~~~~l~~~gG~~~~~~~~~~~~~~ 134 (135)
++++..+++++ . .|....+.+..|++ .|......|+||-.++
T Consensus 97 ~~~~g~l~l~~vdg~~~~g~tl~ela~~l~~-lG~~~AinLDGGgSs~ 143 (170)
T PF09992_consen 97 VTADGKLLLIVVDGRQSAGMTLDELAQLLKS-LGCVDAINLDGGGSST 143 (170)
T ss_dssp E-TTSEEEEEEE----S--B-HHHHHHHHHH-HT-SEEEE---GGG--
T ss_pred EeCCCcEEEEEEcCCcCCCCCHHHHHHHHHH-cCcCeEEEecCCcceE
Confidence 35555655554 4 36888888886666 4999999999986543
No 126
>cd05563 PTS_IIB_ascorbate PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=35.70 E-value=57 Score=19.64 Aligned_cols=16 Identities=25% Similarity=0.364 Sum_probs=11.3
Q ss_pred cEEEEcCCCcchHHHH
Q 032698 97 RLVVGCQSGARSLHAT 112 (135)
Q Consensus 97 ~vvlyC~~G~~a~~~~ 112 (135)
+++++|++|...+...
T Consensus 1 kilvvC~~G~~tS~ll 16 (86)
T cd05563 1 KILAVCGSGLGSSLML 16 (86)
T ss_pred CEEEECCCCccHHHHH
Confidence 3789999887654443
No 127
>PRK05370 argininosuccinate synthase; Validated
Probab=35.55 E-value=71 Score=26.32 Aligned_cols=30 Identities=10% Similarity=-0.046 Sum_probs=21.3
Q ss_pred cCCCcEEEEcCCCcchHHHHHHHHHhCCCce
Q 032698 93 KEEDRLVVGCQSGARSLHATADLLGAVSFRL 123 (135)
Q Consensus 93 ~~~~~vvlyC~~G~~a~~~~~~l~~~gG~~~ 123 (135)
+++++||+.-++|...+.+..||++. |+.+
T Consensus 9 ~~~~KVvLAYSGGLDTSv~l~wL~e~-~~eV 38 (447)
T PRK05370 9 PVGQRVGIAFSGGLDTSAALLWMRQK-GAVP 38 (447)
T ss_pred CCCCEEEEEecCCchHHHHHHHHHhc-CCeE
Confidence 66667766666677777778878776 6663
No 128
>TIGR03372 putres_am_tran putrescine aminotransferase. Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.
Probab=35.31 E-value=1.3e+02 Score=24.60 Aligned_cols=36 Identities=25% Similarity=0.289 Sum_probs=24.2
Q ss_pred HHHHHHHhhccCCCcEEEEcCCCcchHHHHHHHHHh
Q 032698 83 DFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGA 118 (135)
Q Consensus 83 ~~~~~~~~~~~~~~~vvlyC~~G~~a~~~~~~l~~~ 118 (135)
++.+.+.+..+.+...++||++|..+...+-.+.+.
T Consensus 121 ~lAe~L~~~~p~~~~~v~f~~SGsEA~e~AlklAr~ 156 (442)
T TIGR03372 121 LLAKTLAALTPGKLKYSFFCNSGTESVEAALKLAKA 156 (442)
T ss_pred HHHHHHHHhCCCCcCEEEEeCCchHHHHHHHHHHHH
Confidence 445555544333335788899999988888777665
No 129
>KOG4053 consensus Ataxin-1, involved in Ca2+ homeostasis [Function unknown]
Probab=34.92 E-value=24 Score=25.70 Aligned_cols=67 Identities=19% Similarity=0.096 Sum_probs=43.6
Q ss_pred CCCcceeCHHHHHHHhh-CCCeEEecCChHHHhcCCCCCCceeCeeccccCCCCCCCChHHHHHHHhh-ccCCCcEEEEc
Q 032698 25 GAEVITVDVRAAKNLLE-SGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL-CKEEDRLVVGC 102 (135)
Q Consensus 25 ~~~~~~is~~el~~~l~-~~~~iIDvR~~~e~~~ghIpgA~~~nip~~~~~~~~~~~~~~~~~~~~~~-~~~~~~vvlyC 102 (135)
-.....++.+++.+.-. .+.+.||...-......|.||. +-|-+... +- .....+ ...++|+.+|.
T Consensus 49 lkkVEDl~TeDFirsA~~S~~lkidsstVvrI~~S~~pg~--vti~F~~g---------~h-~akv~levq~ehPfFVyG 116 (224)
T KOG4053|consen 49 LKKVEDLSTEDFIRSAEESDDLKIDSSTVVRIKSSGCPGS--VTIIFEVG---------EH-KAKVSLEVQVEHPFFVYG 116 (224)
T ss_pred eeehhhcchHHHHHHHHhcCCeEeecceEEEeeccCCCce--EEEEEEec---------cc-cccceeeccCCCceEEec
Confidence 34456688888876554 3678888887777778999999 66655310 11 111122 47889999995
Q ss_pred C
Q 032698 103 Q 103 (135)
Q Consensus 103 ~ 103 (135)
.
T Consensus 117 q 117 (224)
T KOG4053|consen 117 Q 117 (224)
T ss_pred c
Confidence 4
No 130
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=34.48 E-value=54 Score=19.44 Aligned_cols=26 Identities=19% Similarity=0.406 Sum_probs=21.5
Q ss_pred cceeCHHHHHHHhhCC--CeEEecCChH
Q 032698 28 VITVDVRAAKNLLESG--YGYLDVRTAE 53 (135)
Q Consensus 28 ~~~is~~el~~~l~~~--~~iIDvR~~~ 53 (135)
...|+.+++.++..+| +.|+|..+-+
T Consensus 17 s~YiTL~di~~lV~~g~~~~V~D~ktge 44 (64)
T PF07879_consen 17 SSYITLEDIAQLVREGEDFKVVDAKTGE 44 (64)
T ss_pred ceeEeHHHHHHHHHCCCeEEEEECCCCc
Confidence 4679999999999885 6899998743
No 131
>cd05568 PTS_IIB_bgl_like PTS_IIB_bgl_like: the PTS (phosphotransferase system) IIB domain of a family of sensory systems composed of a membrane-bound sugar-sensor (similar to BglF) and a transcription antiterminator (similar to BglG) which regulate expression of genes involved in sugar utilization. The domain architecture of the IIB-containing protein includes a region N-terminal to the IIB domain which is homologous to the BglG transcription antiterminator with an RNA-binding domain followed by two homologous domains, PRD1 and PRD2 (PTS Regulation Domains). C-terminal to the IIB domain is a domain similar to the PTS IIA domain. In this system, the BglG-like region and the IIB and IIA-like domains are all expressed together as a single multidomain protein. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include this sensory system with similarity to the bacterial
Probab=34.20 E-value=58 Score=19.27 Aligned_cols=26 Identities=19% Similarity=0.175 Sum_probs=17.3
Q ss_pred cEEEEcCCCcchH-HHHHHHHHhCCCc
Q 032698 97 RLVVGCQSGARSL-HATADLLGAVSFR 122 (135)
Q Consensus 97 ~vvlyC~~G~~a~-~~~~~l~~~gG~~ 122 (135)
+++++|++|..++ .....+.+..+..
T Consensus 2 kilivC~~G~~~s~~l~~~l~~~~~~~ 28 (85)
T cd05568 2 KALVVCPSGIGTSRLLKSKLKKLFPEI 28 (85)
T ss_pred eEEEECCCCHHHHHHHHHHHHHHCCCc
Confidence 5899999886654 5566666654433
No 132
>COG1204 Superfamily II helicase [General function prediction only]
Probab=32.78 E-value=1.8e+02 Score=25.70 Aligned_cols=85 Identities=13% Similarity=-0.075 Sum_probs=49.8
Q ss_pred eCHHHHHHHhhCCCeEEecCChHHHhcCCCCCCceeCeeccccCCCCCCCChHHHHHHHhhccCCCcEEEEcCCCcchHH
Q 032698 31 VDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSGARSLH 110 (135)
Q Consensus 31 is~~el~~~l~~~~~iIDvR~~~e~~~ghIpgA~~~nip~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvlyC~~G~~a~~ 110 (135)
-.+.|+.++++.....-|.|+..-+.+-...++ +..............+..........+..+..+.++|.+...+..
T Consensus 191 pN~~evA~wL~a~~~~~~~rp~~l~~~v~~~~~--~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~~ 268 (766)
T COG1204 191 PNAEEVADWLNAKLVESDWRPVPLRRGVPYVGA--FLGADGKKKTWPLLIDNLALELVLESLAEGGQVLVFVHSRKEAEK 268 (766)
T ss_pred CCHHHHHHHhCCcccccCCCCcccccCCccceE--EEEecCccccccccchHHHHHHHHHHHhcCCeEEEEEecCchHHH
Confidence 367899999988645678887666655444433 222111000000111112233333335788899999999888888
Q ss_pred HHHHHHH
Q 032698 111 ATADLLG 117 (135)
Q Consensus 111 ~~~~l~~ 117 (135)
.|..+.+
T Consensus 269 ~A~~l~~ 275 (766)
T COG1204 269 TAKKLRI 275 (766)
T ss_pred HHHHHHH
Confidence 8888874
No 133
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=32.72 E-value=1.4e+02 Score=19.35 Aligned_cols=31 Identities=16% Similarity=0.225 Sum_probs=17.2
Q ss_pred HHHHHHHhh---ccCCCcEEEEcC-CCcchHHHHH
Q 032698 83 DFLKKVRSL---CKEEDRLVVGCQ-SGARSLHATA 113 (135)
Q Consensus 83 ~~~~~~~~~---~~~~~~vvlyC~-~G~~a~~~~~ 113 (135)
++.+.+.+. ++.++.+++.++ -|+.-...+.
T Consensus 43 ~~~~~l~~~i~~~~~~~~vivltDl~GGSp~n~a~ 77 (116)
T TIGR00824 43 TLQEKYNAALADLDTEEEVLFLVDIFGGSPYNAAA 77 (116)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEeCCCCCHHHHHH
Confidence 455554443 356677777777 4555444444
No 134
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=32.61 E-value=64 Score=20.22 Aligned_cols=15 Identities=13% Similarity=0.485 Sum_probs=11.9
Q ss_pred cEEEEcCCCcchHHH
Q 032698 97 RLVVGCQSGARSLHA 111 (135)
Q Consensus 97 ~vvlyC~~G~~a~~~ 111 (135)
+|++.|++|..++..
T Consensus 4 kILvvCgsG~~TS~m 18 (94)
T PRK10310 4 KIIVACGGAVATSTM 18 (94)
T ss_pred eEEEECCCchhHHHH
Confidence 599999999865555
No 135
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=32.24 E-value=1e+02 Score=23.11 Aligned_cols=26 Identities=8% Similarity=0.047 Sum_probs=15.0
Q ss_pred EEEEcC-CCcchHHHHHHHHHhCCCceE
Q 032698 98 LVVGCQ-SGARSLHATADLLGAVSFRLR 124 (135)
Q Consensus 98 vvlyC~-~G~~a~~~~~~l~~~gG~~~~ 124 (135)
|-++.+ ++..-+...+.|.+. ||+++
T Consensus 42 VkFvTNttk~Sk~~l~~rL~rl-gf~v~ 68 (262)
T KOG3040|consen 42 VKFVTNTTKESKRNLHERLQRL-GFDVS 68 (262)
T ss_pred EEEEecCcchhHHHHHHHHHHh-CCCcc
Confidence 434444 455556666767664 88754
No 136
>TIGR00201 comF comF family protein. This protein is found in species that do (Bacillus subtilis, Haemophilus influenzae) or do not (E. coli, Borrelia burgdorferi) have described systems for natural transformation with exogenous DNA. It is involved in competence for transformation in Bacillus subtilis.
Probab=31.24 E-value=71 Score=22.58 Aligned_cols=33 Identities=15% Similarity=0.044 Sum_probs=25.6
Q ss_pred CCCcEEEEcC---CCcchHHHHHHHHHhCCCceEeec
Q 032698 94 EEDRLVVGCQ---SGARSLHATADLLGAVSFRLRFQF 127 (135)
Q Consensus 94 ~~~~vvlyC~---~G~~a~~~~~~l~~~gG~~~~~~~ 127 (135)
++++|+++++ +|.....+++.|.+. |-..++.+
T Consensus 151 ~~~~vllvDDV~TTGaTl~~~~~~L~~~-Ga~~V~~~ 186 (190)
T TIGR00201 151 QGRNIVLVDDVVTTGATLHEIARLLLEL-GAASVQVW 186 (190)
T ss_pred CCCEEEEEeeeeccHHHHHHHHHHHHHc-CCCEEEEE
Confidence 4678999988 788888988888775 66666654
No 137
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=31.12 E-value=98 Score=23.99 Aligned_cols=40 Identities=15% Similarity=0.262 Sum_probs=34.5
Q ss_pred ccCCCcEEEEcCCCcchHHHHHHHHHhCCCceEeecCCCcc
Q 032698 92 CKEEDRLVVGCQSGARSLHATADLLGAVSFRLRFQFSPTKE 132 (135)
Q Consensus 92 ~~~~~~vvlyC~~G~~a~~~~~~l~~~gG~~~~~~~~~~~~ 132 (135)
+++|+++++..-+|..+......+++. |++.+-..+|+|-
T Consensus 5 ~~k~tkvivqGitg~~gtfh~~~~l~y-Gt~~V~GvtPgkg 44 (293)
T COG0074 5 LNKDTKVIVQGITGKQGTFHTEQMLAY-GTKIVGGVTPGKG 44 (293)
T ss_pred ecCCCeEEEeccccccchHHHHHHHHh-CCceeecccCCCC
Confidence 478999999988888888888888887 9999999999874
No 138
>COG4803 Predicted membrane protein [Function unknown]
Probab=30.92 E-value=96 Score=21.79 Aligned_cols=52 Identities=23% Similarity=0.182 Sum_probs=37.5
Q ss_pred hHHHHHHHhhccCCCcEEEEcCCCcchHHHHHHHHHhCCCceEeecCCCccc
Q 032698 82 PDFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAVSFRLRFQFSPTKEA 133 (135)
Q Consensus 82 ~~~~~~~~~~~~~~~~vvlyC~~G~~a~~~~~~l~~~gG~~~~~~~~~~~~~ 133 (135)
++|...+..-+.++..-++.--+......+...+...+|--++..+|+..|.
T Consensus 103 DdFik~l~~ti~pG~sALFvLi~k~t~DKVl~~~~g~~g~vlrTSLs~e~E~ 154 (170)
T COG4803 103 DDFIKELGETIQPGSSALFVLISKMTEDKVLADLSGFGGTVLRTSLSKEEEQ 154 (170)
T ss_pred HHHHHHHHhhcCCCCeEEEEEeeccchHHHHHHhhccCCEEEEccCCHHHHH
Confidence 4777777776566665544445567777888878887777788999988773
No 139
>PF00733 Asn_synthase: Asparagine synthase; InterPro: IPR001962 This domain is always found associated with (IPR000583 from INTERPRO). Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B (6.3.5.4 from EC) catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase [].; GO: 0004066 asparagine synthase (glutamine-hydrolyzing) activity, 0006529 asparagine biosynthetic process; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A 1Q15_D 1Q19_C 1CT9_C 3K32_F.
Probab=30.86 E-value=1.7e+02 Score=20.83 Aligned_cols=39 Identities=10% Similarity=-0.059 Sum_probs=25.7
Q ss_pred HHHHHHhhccCCCcEEEEcCCCcchHHHHHHHHHhCCCc
Q 032698 84 FLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAVSFR 122 (135)
Q Consensus 84 ~~~~~~~~~~~~~~vvlyC~~G~~a~~~~~~l~~~gG~~ 122 (135)
+.+.+...+..+.+|.+..++|..|...+..+.+..+..
T Consensus 6 l~~av~~rl~~~~~i~~~LSGGlDSs~i~~~~~~~~~~~ 44 (255)
T PF00733_consen 6 LEEAVARRLRSDKPIGILLSGGLDSSAIAALAARQGGPP 44 (255)
T ss_dssp HHHHHHHHCGCTSEEEEE--SSHHHHHHHHHHHHTCCSE
T ss_pred HHHHHHHHHhcCCCEEEECCCChhHHHHHHHHHHhhCCc
Confidence 344444445678889888888998888888777733433
No 140
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=30.52 E-value=95 Score=19.91 Aligned_cols=24 Identities=21% Similarity=0.176 Sum_probs=14.4
Q ss_pred ccCCCcEEEEcC-CCcc-hHHHHHHH
Q 032698 92 CKEEDRLVVGCQ-SGAR-SLHATADL 115 (135)
Q Consensus 92 ~~~~~~vvlyC~-~G~~-a~~~~~~l 115 (135)
.++++.+++.|+ .|+. ...++..+
T Consensus 54 ~~~~~~vlil~Dl~ggsp~n~a~~~~ 79 (116)
T PF03610_consen 54 LDEGDGVLILTDLGGGSPFNEAARLL 79 (116)
T ss_dssp CCTTSEEEEEESSTTSHHHHHHHHHH
T ss_pred ccCCCcEEEEeeCCCCccchHHHHHh
Confidence 367888888888 3433 44444433
No 141
>PF00156 Pribosyltran: Phosphoribosyl transferase domain; InterPro: IPR000836 The name PRT comes from phosphoribosyltransferase (PRTase) enzymes, which carry out phosphoryl transfer reactions on 5-phosphoribosyl-alpha1-pyrophosphate PRPP, an activated form of ribose-5-phosphate. Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage []. This includes a range of diverse phosphoribosyl transferase enzymes including adenine phosphoribosyltransferase (2.4.2.7 from EC); hypoxanthine-guanine-xanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC); ribose-phosphate pyrophosphokinase (2.7.6.1 from EC); amidophosphoribosyltransferase (2.4.2.14 from EC); orotate phosphoribosyltransferase (2.4.2.10 from EC);uracil phosphoribosyltransferase (2.4.2.9 from EC); and xanthine-guanine phosphoribosyltransferase (2.4.2.22 from EC). Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. Members of PRT are defined by the protein fold and by a short 13-residue sequence motif, The motif consists of four hydrophobic amino acids, two acidic amino acids and seven amino acids of variable character, usually including glycine and threonine. The motif has been predicted to be a PRPP-binding site in advance of structural information [, ]. Apart of this motif, different PRT proteins have a low level of sequence identity, less than 15%. The PRT sequence motif is only found in PRTases from the nucleotide synthesis and salvage pathways. Other PRTases, from the tryptophan, histidine and nicotinamide synthetic and salvage pathways, lack the PRT sequence motif and appear to be unrelated to each other and unrelated to the PRT family.; GO: 0009116 nucleoside metabolic process; PDB: 2JBH_A 1Y0B_D 2FXV_B 1GPH_1 1AO0_D 1ORO_B 1VCH_C 2WNS_A 2PRZ_B 2PS1_A ....
Probab=29.28 E-value=85 Score=19.92 Aligned_cols=32 Identities=16% Similarity=0.064 Sum_probs=24.0
Q ss_pred cCCCcEEEEcC---CCcchHHHHHHHHHhCCCceEe
Q 032698 93 KEEDRLVVGCQ---SGARSLHATADLLGAVSFRLRF 125 (135)
Q Consensus 93 ~~~~~vvlyC~---~G~~a~~~~~~l~~~gG~~~~~ 125 (135)
.++++|+++++ +|.....+...|.+. |.+++.
T Consensus 86 ~~gk~vliVDDvi~tG~Tl~~~~~~L~~~-g~~~v~ 120 (125)
T PF00156_consen 86 IKGKRVLIVDDVIDTGGTLKEAIELLKEA-GAKVVG 120 (125)
T ss_dssp GTTSEEEEEEEEESSSHHHHHHHHHHHHT-TBSEEE
T ss_pred ccceeEEEEeeeEcccHHHHHHHHHHHhC-CCcEEE
Confidence 46788999876 788888888888766 555443
No 142
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=28.87 E-value=95 Score=26.67 Aligned_cols=42 Identities=19% Similarity=0.315 Sum_probs=30.0
Q ss_pred HHHHHHHhhccCCCcEEEEcCCCcchHHHHHHHHHhCCCceEe
Q 032698 83 DFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAVSFRLRF 125 (135)
Q Consensus 83 ~~~~~~~~~~~~~~~vvlyC~~G~~a~~~~~~l~~~gG~~~~~ 125 (135)
.+...+..+..++.+++++|++-.++...+..|.+. |++..+
T Consensus 434 ~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~-gi~~~~ 475 (652)
T PRK05298 434 DLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKEL-GIKVRY 475 (652)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhc-ceeEEE
Confidence 344444444467888999999888888888888665 776544
No 143
>cd01991 Asn_Synthase_B_C The C-terminal domain of Asparagine Synthase B. This domain is always found associated n-terminal amidotransferase domain. Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase .
Probab=28.78 E-value=1.9e+02 Score=21.16 Aligned_cols=36 Identities=17% Similarity=0.002 Sum_probs=26.0
Q ss_pred HHHHHhhccCCCcEEEEcCCCcchHHHHHHHHHhCC
Q 032698 85 LKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAVS 120 (135)
Q Consensus 85 ~~~~~~~~~~~~~vvlyC~~G~~a~~~~~~l~~~gG 120 (135)
.+.+...+..+.+|.+..++|..|..++..+.+.++
T Consensus 5 ~~av~~~~~~~~~v~~~LSGGlDSs~va~~~~~~~~ 40 (269)
T cd01991 5 EDAVRRRLRSDVPVGVLLSGGLDSSLVAALAARLLP 40 (269)
T ss_pred HHHHHHHhccCCceEEeecccHHHHHHHHHHHHhhC
Confidence 344443346788888888888888888887777654
No 144
>KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism]
Probab=28.61 E-value=1.2e+02 Score=24.78 Aligned_cols=36 Identities=14% Similarity=0.117 Sum_probs=29.2
Q ss_pred HHHHHHHhhccCCCcEEEEcCCCcchHHHHHHHHHh
Q 032698 83 DFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGA 118 (135)
Q Consensus 83 ~~~~~~~~~~~~~~~vvlyC~~G~~a~~~~~~l~~~ 118 (135)
++++.+...++.+..++++-++|..+...+-.+.+.
T Consensus 96 ~~Ae~L~s~~P~~l~~vfF~nsGsEANelal~mar~ 131 (442)
T KOG1404|consen 96 DLAEALVSKLPGDLKVVFFVNSGSEANELALKMARL 131 (442)
T ss_pred HHHHHHHHhCCCCceEEEEecCCchHHHHHHHHHHH
Confidence 777777766788888999999999999988776654
No 145
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=28.59 E-value=4.1e+02 Score=23.35 Aligned_cols=88 Identities=19% Similarity=0.206 Sum_probs=50.1
Q ss_pred eCHHHHHHHhh---C-C-CeEEecCChHHHhcCCCCCCceeCeeccccCCCCCCCChHHHHHHHhhccCCCcEEEEcCCC
Q 032698 31 VDVRAAKNLLE---S-G-YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSG 105 (135)
Q Consensus 31 is~~el~~~l~---~-~-~~iIDvR~~~e~~~ghIpgA~~~nip~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvlyC~~G 105 (135)
++.+++.++++ + | ..+|.|++.+|....--.|+..+-|... +..+...+ .+....+...+++ .+++++.+|
T Consensus 144 L~~~~l~~l~~~a~~lGme~LvEvh~~~el~~a~~~ga~iiGINnR-dL~tf~vd-~~~t~~L~~~ip~--~~~~VsESG 219 (695)
T PRK13802 144 LDDAQLKHLLDLAHELGMTVLVETHTREEIERAIAAGAKVIGINAR-NLKDLKVD-VNKYNELAADLPD--DVIKVAESG 219 (695)
T ss_pred cCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhCCCCEEEEeCC-CCccceeC-HHHHHHHHhhCCC--CcEEEEcCC
Confidence 45566666664 3 5 3799999999986433334432333221 11111111 1222333333343 478888999
Q ss_pred cchHHHHHHHHHhCCCce
Q 032698 106 ARSLHATADLLGAVSFRL 123 (135)
Q Consensus 106 ~~a~~~~~~l~~~gG~~~ 123 (135)
..+..-+..+.+. |++.
T Consensus 220 I~~~~d~~~l~~~-G~da 236 (695)
T PRK13802 220 VFGAVEVEDYARA-GADA 236 (695)
T ss_pred CCCHHHHHHHHHC-CCCE
Confidence 9998888888775 6664
No 146
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=28.51 E-value=79 Score=22.64 Aligned_cols=29 Identities=21% Similarity=0.168 Sum_probs=22.4
Q ss_pred ccCCCcEEEEcC---CCcchHHHHHHHHHhCC
Q 032698 92 CKEEDRLVVGCQ---SGARSLHATADLLGAVS 120 (135)
Q Consensus 92 ~~~~~~vvlyC~---~G~~a~~~~~~l~~~gG 120 (135)
+.++++|+++++ +|.....+.+.+.+.|+
T Consensus 114 i~~G~rVlIVDDviaTGgT~~a~~~lv~~aGa 145 (189)
T PRK09219 114 LSEGDRVLIIDDFLANGQAALGLIDIIEQAGA 145 (189)
T ss_pred CCCCCEEEEEeehhhcChHHHHHHHHHHHCCC
Confidence 468999999988 67777777777766643
No 147
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=28.43 E-value=41 Score=21.41 Aligned_cols=28 Identities=18% Similarity=0.144 Sum_probs=20.8
Q ss_pred cCCCcceeCHHHHHHHhhCCCeEEecCC
Q 032698 24 SGAEVITVDVRAAKNLLESGYGYLDVRT 51 (135)
Q Consensus 24 ~~~~~~~is~~el~~~l~~~~~iIDvR~ 51 (135)
....+..++.+++.+.+..+.+|||+|.
T Consensus 75 ~h~~f~~l~~~~~~~~~~~~~~iiD~~~ 102 (106)
T PF03720_consen 75 DHDEFRELDWEEIAKLMRKPPVIIDGRN 102 (106)
T ss_dssp --GGGGCCGHHHHHHHSCSSEEEEESSS
T ss_pred cCHHHhccCHHHHHHhcCCCCEEEECcc
Confidence 3445667888888888866679999986
No 148
>PRK00919 GMP synthase subunit B; Validated
Probab=28.35 E-value=1.7e+02 Score=22.82 Aligned_cols=28 Identities=18% Similarity=0.189 Sum_probs=22.0
Q ss_pred CCcEEEEcCCCcchHHHHHHHHHhCCCc
Q 032698 95 EDRLVVGCQSGARSLHATADLLGAVSFR 122 (135)
Q Consensus 95 ~~~vvlyC~~G~~a~~~~~~l~~~gG~~ 122 (135)
++++++-.++|..|..++.++.+..|++
T Consensus 21 ~~kVlVa~SGGVDSsvla~la~~~lG~~ 48 (307)
T PRK00919 21 DGKAIIALSGGVDSSVAAVLAHRAIGDR 48 (307)
T ss_pred CCCEEEEecCCHHHHHHHHHHHHHhCCe
Confidence 3677777888999999998887766765
No 149
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=26.49 E-value=1e+02 Score=18.52 Aligned_cols=18 Identities=28% Similarity=0.469 Sum_probs=12.5
Q ss_pred CCcEEEEcCCCc-chHHHH
Q 032698 95 EDRLVVGCQSGA-RSLHAT 112 (135)
Q Consensus 95 ~~~vvlyC~~G~-~a~~~~ 112 (135)
+.||++.|..|. |+...+
T Consensus 39 ~~pvlVHC~~G~gRtg~~~ 57 (105)
T smart00012 39 SGPVVVHCSAGVGRTGTFV 57 (105)
T ss_pred CCCEEEEeCCCCChhhHHH
Confidence 679999999654 554433
No 150
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=26.49 E-value=1e+02 Score=18.52 Aligned_cols=18 Identities=28% Similarity=0.469 Sum_probs=12.5
Q ss_pred CCcEEEEcCCCc-chHHHH
Q 032698 95 EDRLVVGCQSGA-RSLHAT 112 (135)
Q Consensus 95 ~~~vvlyC~~G~-~a~~~~ 112 (135)
+.||++.|..|. |+...+
T Consensus 39 ~~pvlVHC~~G~gRtg~~~ 57 (105)
T smart00404 39 SGPVVVHCSAGVGRTGTFV 57 (105)
T ss_pred CCCEEEEeCCCCChhhHHH
Confidence 679999999654 554433
No 151
>COG0608 RecJ Single-stranded DNA-specific exonuclease [DNA replication, recombination, and repair]
Probab=26.46 E-value=1.9e+02 Score=23.79 Aligned_cols=41 Identities=12% Similarity=0.180 Sum_probs=31.3
Q ss_pred ccCCCcEEEEcC---CCcchHHHHHHHHHhCCCceEeecCCCcc
Q 032698 92 CKEEDRLVVGCQ---SGARSLHATADLLGAVSFRLRFQFSPTKE 132 (135)
Q Consensus 92 ~~~~~~vvlyC~---~G~~a~~~~~~l~~~gG~~~~~~~~~~~~ 132 (135)
+.++++|++|.. .|..|.......++..|+++-|.++...+
T Consensus 33 i~~~~~I~I~~d~DaDGitS~ail~~~L~~~g~~~~~~ip~~~~ 76 (491)
T COG0608 33 IEKGEKILIYGDYDADGITSAAILAKALRRLGADVDYYIPNRFE 76 (491)
T ss_pred HHcCCEEEEEEecCcccHHHHHHHHHHHHHcCCceEEEeCCCcc
Confidence 577888888744 68888887777888889998888876543
No 152
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=26.29 E-value=1.2e+02 Score=26.11 Aligned_cols=42 Identities=19% Similarity=0.324 Sum_probs=30.7
Q ss_pred HHHHHHHhhccCCCcEEEEcCCCcchHHHHHHHHHhCCCceEe
Q 032698 83 DFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAVSFRLRF 125 (135)
Q Consensus 83 ~~~~~~~~~~~~~~~vvlyC~~G~~a~~~~~~l~~~gG~~~~~ 125 (135)
.+...+..+..++.+++++|++-.++...+..|.+. |++..+
T Consensus 430 ~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~-gi~~~~ 471 (655)
T TIGR00631 430 DLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKEL-GIKVRY 471 (655)
T ss_pred HHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhh-ccceee
Confidence 444445444467888999999888888888888765 777555
No 153
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=26.23 E-value=1.3e+02 Score=18.90 Aligned_cols=28 Identities=21% Similarity=0.220 Sum_probs=17.0
Q ss_pred CCCcEEEEcCCCcchHHHHHHHHHhCCC
Q 032698 94 EEDRLVVGCQSGARSLHATADLLGAVSF 121 (135)
Q Consensus 94 ~~~~vvlyC~~G~~a~~~~~~l~~~gG~ 121 (135)
...+|++|..++.-....+..+++..|.
T Consensus 6 ~~~~Vvvysk~~Cp~C~~ak~~L~~~~i 33 (99)
T TIGR02189 6 SEKAVVIFSRSSCCMCHVVKRLLLTLGV 33 (99)
T ss_pred ccCCEEEEECCCCHHHHHHHHHHHHcCC
Confidence 3467888888655555555555555454
No 154
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=26.00 E-value=1.5e+02 Score=18.29 Aligned_cols=38 Identities=11% Similarity=0.149 Sum_probs=22.6
Q ss_pred cCCCcEEEEcCCCcchHHHHHHHHHhCCC--ceEeecCCCc
Q 032698 93 KEEDRLVVGCQSGARSLHATADLLGAVSF--RLRFQFSPTK 131 (135)
Q Consensus 93 ~~~~~vvlyC~~G~~a~~~~~~l~~~gG~--~~~~~~~~~~ 131 (135)
+++.+++++..++.-.+.+ ....+..|| ...|+.+|.+
T Consensus 1 nk~~~v~ivGag~~G~a~~-~~~~~~~g~~i~~~~dv~~~~ 40 (96)
T PF02629_consen 1 NKKTNVIIVGAGNLGRALL-YNGFSMRGFGIVAVFDVDPEK 40 (96)
T ss_dssp CTTEEEEEETTTSHHHHHH-HHHHHHHCECEEEEEEECTTT
T ss_pred CCCCeEEEECCCCcHHHHH-HhHHHHcCCCCEEEEEcCCCc
Confidence 3567889998765544444 434444454 4667766654
No 155
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=25.51 E-value=2.7e+02 Score=20.37 Aligned_cols=53 Identities=11% Similarity=0.002 Sum_probs=34.0
Q ss_pred cceeCHHHHHHHhhC---CCeEEecCChHHHhcCCCCCCceeCeeccccCCCCCCCChHHHHHHHhhccCCCcEEEEcCC
Q 032698 28 VITVDVRAAKNLLES---GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQS 104 (135)
Q Consensus 28 ~~~is~~el~~~l~~---~~~iIDvR~~~e~~~ghIpgA~~~nip~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvlyC~~ 104 (135)
...-|++++...... |-+|+|+|= ||- .. .++...+.+. ....|||+..++
T Consensus 32 ~~~~s~~~fL~~~~~~~pGclllDvrM---------Pg~-----sG-----------lelq~~L~~~-~~~~PVIfiTGh 85 (202)
T COG4566 32 KCFASAEEFLAAAPLDRPGCLLLDVRM---------PGM-----SG-----------LELQDRLAER-GIRLPVIFLTGH 85 (202)
T ss_pred eeecCHHHHHhhccCCCCCeEEEecCC---------CCC-----ch-----------HHHHHHHHhc-CCCCCEEEEeCC
Confidence 344677777666422 357888873 444 11 1677777776 677889998876
Q ss_pred Cc
Q 032698 105 GA 106 (135)
Q Consensus 105 G~ 106 (135)
|.
T Consensus 86 gD 87 (202)
T COG4566 86 GD 87 (202)
T ss_pred CC
Confidence 64
No 156
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=25.51 E-value=95 Score=22.26 Aligned_cols=29 Identities=14% Similarity=0.087 Sum_probs=22.0
Q ss_pred ccCCCcEEEEcC---CCcchHHHHHHHHHhCC
Q 032698 92 CKEEDRLVVGCQ---SGARSLHATADLLGAVS 120 (135)
Q Consensus 92 ~~~~~~vvlyC~---~G~~a~~~~~~l~~~gG 120 (135)
+.++++|+++++ +|.....+.+.+.+.|+
T Consensus 114 l~~G~rVLIVDDvvtTGgT~~a~~~ll~~aGa 145 (191)
T TIGR01744 114 LSDQDRVLIIDDFLANGQAAHGLVDIAKQAGA 145 (191)
T ss_pred CCCcCEEEEEEehhccChHHHHHHHHHHHCCC
Confidence 368999999988 67777777777766543
No 157
>TIGR00689 rpiB_lacA_lacB sugar-phosphate isomerases, RpiB/LacA/LacB family. Proteins of known function in this family act as sugar (pentose and/or hexose)-phosphate isomerases, including the LacA and LacB subunits of galactose-6-phosphate isomerases from Gram-positive bacteria and RpiB. RpiB is the second ribose phosphate isomerase of E. coli. It lacks homology to RpiA, its inducer is unknown (but is not ribose), and it can be replaced by the homologous galactose-6-phosphate isomerase of Streptococcus mutans, all of which suggests that the ribose phosphate isomerase activity of RpiB is a secondary function. On the other hand, there appear to be a significant number of species which contain rpiB, lack rpiA and seem to require rpi activity in order to copplete the pentose phosphate pathway.
Probab=25.34 E-value=2.3e+02 Score=19.47 Aligned_cols=57 Identities=23% Similarity=0.247 Sum_probs=34.2
Q ss_pred HHHHHhhC-CCeEEecCChHHHhcCCCCCCceeCeeccccCCCCCCCChHHHHHHHhhc--cCCCcEEEEcCCCcchHHH
Q 032698 35 AAKNLLES-GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLC--KEEDRLVVGCQSGARSLHA 111 (135)
Q Consensus 35 el~~~l~~-~~~iIDvR~~~e~~~ghIpgA~~~nip~~~~~~~~~~~~~~~~~~~~~~~--~~~~~vvlyC~~G~~a~~~ 111 (135)
.+.+.|.+ +..++|.-+.. ..+ +++| ++...+.+.+ .+.+.-|+.|.+|.-.+.+
T Consensus 15 ~l~~~L~~~g~eV~D~G~~~-------~~~--~dYp-------------d~a~~va~~V~~g~~~~GIliCGtGiG~sia 72 (144)
T TIGR00689 15 EIIEHLKQKGHEVIDCGTLY-------DER--VDYP-------------DYAKLVADKVVAGEVSLGILICGTGIGMSIA 72 (144)
T ss_pred HHHHHHHHCCCEEEEcCCCC-------CCC--CChH-------------HHHHHHHHHHHcCCCceEEEEcCCcHHHHHH
Confidence 45566655 68899986521 111 3333 4555454442 3445679999999877766
Q ss_pred HH
Q 032698 112 TA 113 (135)
Q Consensus 112 ~~ 113 (135)
+.
T Consensus 73 AN 74 (144)
T TIGR00689 73 AN 74 (144)
T ss_pred Hh
Confidence 65
No 158
>PRK12615 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=25.21 E-value=2.6e+02 Score=19.92 Aligned_cols=57 Identities=30% Similarity=0.374 Sum_probs=34.0
Q ss_pred HHHHHhhC-CCeEEecCChHHHhcCCCCCCceeCeeccccCCCCCCCChHHHHHHHhhc--cCCCcEEEEcCCCcchHHH
Q 032698 35 AAKNLLES-GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLC--KEEDRLVVGCQSGARSLHA 111 (135)
Q Consensus 35 el~~~l~~-~~~iIDvR~~~e~~~ghIpgA~~~nip~~~~~~~~~~~~~~~~~~~~~~~--~~~~~vvlyC~~G~~a~~~ 111 (135)
.+.+.|.+ +..++|.-+.. ..+ +++| ++...+.+.+ .+...-|++|.+|.-.+.+
T Consensus 17 ~l~~~L~~~G~eV~D~G~~~-------~~~--~dYp-------------d~a~~va~~V~~g~~d~GIliCGTGiG~sia 74 (171)
T PRK12615 17 AVSDFLKSKGYDVIDCGTYD-------HTR--THYP-------------IFGKKVGEAVVNGQADLGVCICGTGVGINNA 74 (171)
T ss_pred HHHHHHHHCCCEEEEcCCCC-------CCC--CChH-------------HHHHHHHHHHHcCCCCEEEEEcCCcHHHHHH
Confidence 45556655 68899986421 112 3444 4444444442 3446689999998876666
Q ss_pred HH
Q 032698 112 TA 113 (135)
Q Consensus 112 ~~ 113 (135)
+.
T Consensus 75 AN 76 (171)
T PRK12615 75 VN 76 (171)
T ss_pred Hh
Confidence 65
No 159
>PLN02583 cinnamoyl-CoA reductase
Probab=25.20 E-value=1.1e+02 Score=22.85 Aligned_cols=31 Identities=16% Similarity=0.179 Sum_probs=20.1
Q ss_pred CCCcEEEEcCCCcchHHHHHHHHHhCCCceEe
Q 032698 94 EEDRLVVGCQSGARSLHATADLLGAVSFRLRF 125 (135)
Q Consensus 94 ~~~~vvlyC~~G~~a~~~~~~l~~~gG~~~~~ 125 (135)
++++|+|...+|.-+...+..|.+. |++++-
T Consensus 5 ~~k~vlVTGatG~IG~~lv~~Ll~~-G~~V~~ 35 (297)
T PLN02583 5 SSKSVCVMDASGYVGFWLVKRLLSR-GYTVHA 35 (297)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhC-CCEEEE
Confidence 3445666666677777777777765 677654
No 160
>TIGR01118 lacA galactose-6-phosphate isomerase, LacA subunit. This family contains members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=25.10 E-value=2.3e+02 Score=19.42 Aligned_cols=55 Identities=25% Similarity=0.268 Sum_probs=32.8
Q ss_pred HHHHHhhC-CCeEEecCChHHHhcCCCCCCceeCeeccccCCCCCCCChHHHHHHHhhc--cCCCcEEEEcCCCcchHHH
Q 032698 35 AAKNLLES-GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLC--KEEDRLVVGCQSGARSLHA 111 (135)
Q Consensus 35 el~~~l~~-~~~iIDvR~~~e~~~ghIpgA~~~nip~~~~~~~~~~~~~~~~~~~~~~~--~~~~~vvlyC~~G~~a~~~ 111 (135)
++.+.|.+ +..++|.-+ ..+ +++| ++...+.+.+ .+...=|++|.+|.-.+.+
T Consensus 17 ~i~~~L~~~G~eV~D~G~---------~~~--~dYp-------------d~a~~va~~V~~~e~~~GIliCGtGiG~sia 72 (141)
T TIGR01118 17 VIKNFLVDNGFEVIDVTE---------GDG--QDFV-------------DVTLAVASEVQKDEQNLGIVIDAYGAGSFMV 72 (141)
T ss_pred HHHHHHHHCCCEEEEcCC---------CCC--CCcH-------------HHHHHHHHHHHcCCCceEEEEcCCCHhHhhh
Confidence 44556655 688999854 112 4444 4444444431 3445569999998876666
Q ss_pred HH
Q 032698 112 TA 113 (135)
Q Consensus 112 ~~ 113 (135)
+.
T Consensus 73 AN 74 (141)
T TIGR01118 73 AT 74 (141)
T ss_pred hh
Confidence 65
No 161
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=25.09 E-value=1.6e+02 Score=17.38 Aligned_cols=30 Identities=13% Similarity=0.184 Sum_probs=19.0
Q ss_pred cCCCcEEEEcCCCcchHHHHHHHHHhCCCc
Q 032698 93 KEEDRLVVGCQSGARSLHATADLLGAVSFR 122 (135)
Q Consensus 93 ~~~~~vvlyC~~G~~a~~~~~~l~~~gG~~ 122 (135)
....+|++|...+.-....+..+++..|+.
T Consensus 5 ~~~~~V~ly~~~~Cp~C~~ak~~L~~~gi~ 34 (79)
T TIGR02190 5 RKPESVVVFTKPGCPFCAKAKATLKEKGYD 34 (79)
T ss_pred CCCCCEEEEECCCCHhHHHHHHHHHHcCCC
Confidence 345668888886666555555555555655
No 162
>PRK12613 galactose-6-phosphate isomerase subunit LacA; Provisional
Probab=25.03 E-value=2.3e+02 Score=19.41 Aligned_cols=54 Identities=20% Similarity=0.204 Sum_probs=32.6
Q ss_pred HHHHHhhC-CCeEEecCChHHHhcCCCCCCceeCeeccccCCCCCCCChHHHHHHHhhc--cCCCcEEEEcCCCcchHHH
Q 032698 35 AAKNLLES-GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLC--KEEDRLVVGCQSGARSLHA 111 (135)
Q Consensus 35 el~~~l~~-~~~iIDvR~~~e~~~ghIpgA~~~nip~~~~~~~~~~~~~~~~~~~~~~~--~~~~~vvlyC~~G~~a~~~ 111 (135)
++.+.|.+ +..++|.-+ .+ +++| ++...+.+.+ .+...=|++|.+|.-.+.+
T Consensus 17 ~l~~~L~~~g~eV~D~G~----------~~--~dyp-------------d~a~~va~~V~~~e~~~GIliCGtGiG~sia 71 (141)
T PRK12613 17 LIKSFLQEEGYDIIDVTD----------IN--SDFI-------------DNTLAVAKAVNEAEGRLGIMVDAYGAGPFMV 71 (141)
T ss_pred HHHHHHHHCCCEEEEcCC----------CC--CChH-------------HHHHHHHHHHHcCCCceEEEEcCCCHhHhhh
Confidence 45556655 688999854 12 3343 4444444442 3445679999998766666
Q ss_pred HH
Q 032698 112 TA 113 (135)
Q Consensus 112 ~~ 113 (135)
+.
T Consensus 72 AN 73 (141)
T PRK12613 72 AT 73 (141)
T ss_pred hh
Confidence 54
No 163
>TIGR01120 rpiB ribose 5-phosphate isomerase B. Involved in the non-oxidative branch of the pentose phospate pathway.
Probab=24.94 E-value=2.4e+02 Score=19.41 Aligned_cols=57 Identities=23% Similarity=0.253 Sum_probs=33.4
Q ss_pred HHHHHhhC-CCeEEecCChHHHhcCCCCCCceeCeeccccCCCCCCCChHHHHHHHhhc--cCCCcEEEEcCCCcchHHH
Q 032698 35 AAKNLLES-GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLC--KEEDRLVVGCQSGARSLHA 111 (135)
Q Consensus 35 el~~~l~~-~~~iIDvR~~~e~~~ghIpgA~~~nip~~~~~~~~~~~~~~~~~~~~~~~--~~~~~vvlyC~~G~~a~~~ 111 (135)
++.+.|.+ +..++|.-+.. ..+ +++| ++...+.+.+ .+...-|++|.+|.-.+.+
T Consensus 16 ~l~~~L~~~g~eV~D~G~~~-------~~~--~dYp-------------d~a~~va~~V~~~~~~~GIliCGtGiG~sia 73 (143)
T TIGR01120 16 EIKAFLVERGVKVIDKGTWS-------SER--TDYP-------------HYAKQVALAVAGGEVDGGILICGTGIGMSIA 73 (143)
T ss_pred HHHHHHHHCCCEEEEeCCCC-------CCC--CCHH-------------HHHHHHHHHHHCCCCceEEEEcCCcHHHHHH
Confidence 34555555 67899986421 112 3444 4444444442 3445679999999877766
Q ss_pred HH
Q 032698 112 TA 113 (135)
Q Consensus 112 ~~ 113 (135)
+.
T Consensus 74 AN 75 (143)
T TIGR01120 74 AN 75 (143)
T ss_pred Hh
Confidence 65
No 164
>PRK01565 thiamine biosynthesis protein ThiI; Provisional
Probab=24.89 E-value=1e+02 Score=24.71 Aligned_cols=30 Identities=10% Similarity=0.014 Sum_probs=20.8
Q ss_pred cCCCcEEEEcCCCcchHHHHHHHHHhCCCce
Q 032698 93 KEEDRLVVGCQSGARSLHATADLLGAVSFRL 123 (135)
Q Consensus 93 ~~~~~vvlyC~~G~~a~~~~~~l~~~gG~~~ 123 (135)
..+.++++-+++|..|.-+++++.+. |+.+
T Consensus 174 g~~gkvvvllSGGiDS~vaa~l~~k~-G~~v 203 (394)
T PRK01565 174 GTSGKALLLLSGGIDSPVAGYLAMKR-GVEI 203 (394)
T ss_pred CCCCCEEEEECCChhHHHHHHHHHHC-CCEE
Confidence 34556777777788888887776665 6653
No 165
>PRK12828 short chain dehydrogenase; Provisional
Probab=24.76 E-value=1.3e+02 Score=21.12 Aligned_cols=27 Identities=15% Similarity=0.027 Sum_probs=16.0
Q ss_pred CCcEEEEcCCCcchHHHHHHHHHhCCCc
Q 032698 95 EDRLVVGCQSGARSLHATADLLGAVSFR 122 (135)
Q Consensus 95 ~~~vvlyC~~G~~a~~~~~~l~~~gG~~ 122 (135)
++.+++.+.+|.-+...+.+|.+. |++
T Consensus 7 ~k~vlItGatg~iG~~la~~l~~~-G~~ 33 (239)
T PRK12828 7 GKVVAITGGFGGLGRATAAWLAAR-GAR 33 (239)
T ss_pred CCEEEEECCCCcHhHHHHHHHHHC-CCe
Confidence 445566666666666666666555 555
No 166
>PRK07904 short chain dehydrogenase; Provisional
Probab=24.72 E-value=1.2e+02 Score=22.03 Aligned_cols=23 Identities=22% Similarity=0.211 Sum_probs=9.8
Q ss_pred CcEEEEcCCCcc-hHHHHHHHHHh
Q 032698 96 DRLVVGCQSGAR-SLHATADLLGA 118 (135)
Q Consensus 96 ~~vvlyC~~G~~-a~~~~~~l~~~ 118 (135)
..|++.+.+... .......+.+.
T Consensus 34 ~~V~~~~r~~~~~~~~~~~~l~~~ 57 (253)
T PRK07904 34 ARVVLAALPDDPRRDAAVAQMKAA 57 (253)
T ss_pred CeEEEEeCCcchhHHHHHHHHHhc
Confidence 455555544332 33334444443
No 167
>PF02502 LacAB_rpiB: Ribose/Galactose Isomerase; InterPro: IPR003500 This entry represents the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB). Galactose-6-phosphate isomerase (5.3.1.26 from EC) is a heteromultimeric protein consisting of subunits LacA and LacB, and catalyses the conversion of D-galactose 6-phosphate to D-tagatose and 6-phosphate in the tagatose 6-phosphate pathway of lactose catabolism []. Galactose-6-phosphate isomerase is induced by galactose or lactose. This entry represents the LacB subunit. Ribose 5-phosphate isomerase (5.3.1.6 from EC) forms a homodimer and catalyses the interconversion of D-ribose 5-phosphate and D-ribulose 5-phosphate in the non-oxidative branch of the pentose phosphate pathway. This reaction permits the synthesis of ribose from other sugars, as well as the recycling of sugars from nucleotide breakdown. Two unrelated enzymes can catalyse this reaction: RpiA (found in most organisms) and RpiB (found in some bacteria and eukaryotes). RpiB is also involved in metabolism of the rare sugar, allose, in addition to ribose sugars. The structures of RpiA and RpiB are distinct, RpiB having a Rossmann-type alpha/beta/alpha sandwich topology [].; GO: 0005975 carbohydrate metabolic process; PDB: 3HEE_A 3HE8_A 3PH3_B 3PH4_B 3ONO_A 4EM8_B 3S5P_B 1O1X_A 2BES_D 2VVP_D ....
Probab=24.70 E-value=2.3e+02 Score=19.28 Aligned_cols=57 Identities=35% Similarity=0.501 Sum_probs=33.2
Q ss_pred HHHHHhhC-CCeEEecCChHHHhcCCCCCCceeCeeccccCCCCCCCChHHHHHHHhh-c-cCCCcEEEEcCCCcchHHH
Q 032698 35 AAKNLLES-GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL-C-KEEDRLVVGCQSGARSLHA 111 (135)
Q Consensus 35 el~~~l~~-~~~iIDvR~~~e~~~ghIpgA~~~nip~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~vvlyC~~G~~a~~~ 111 (135)
++.+.|.+ +..++|+-+..+ .+ .++| ++...+... . .....-|+.|.+|.-.+.+
T Consensus 16 ~i~~~L~~~g~eV~D~G~~~~-------~~--~dy~-------------~~a~~va~~V~~~~~d~GIliCgtGiG~~ia 73 (140)
T PF02502_consen 16 AIKEYLEEKGYEVIDFGTYSE-------DS--VDYP-------------DFAEKVAEAVASGEADRGILICGTGIGMSIA 73 (140)
T ss_dssp HHHHHHHHTTEEEEEESESST-------ST----HH-------------HHHHHHHHHHHTTSSSEEEEEESSSHHHHHH
T ss_pred HHHHHHHHCCCEEEEeCCCCC-------CC--CCHH-------------HHHHHHHHHHHcccCCeEEEEcCCChhhhhH
Confidence 44555554 678888865321 12 3444 445445444 2 3345689999999877777
Q ss_pred HH
Q 032698 112 TA 113 (135)
Q Consensus 112 ~~ 113 (135)
+.
T Consensus 74 AN 75 (140)
T PF02502_consen 74 AN 75 (140)
T ss_dssp HH
T ss_pred hh
Confidence 65
No 168
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=24.55 E-value=1.8e+02 Score=18.03 Aligned_cols=35 Identities=11% Similarity=0.118 Sum_probs=22.1
Q ss_pred HHHhhccCCCcEEEEcCCCcchHHHHHHHHHhCCCc
Q 032698 87 KVRSLCKEEDRLVVGCQSGARSLHATADLLGAVSFR 122 (135)
Q Consensus 87 ~~~~~~~~~~~vvlyC~~G~~a~~~~~~l~~~gG~~ 122 (135)
.+.+..+++.++++||.+-.........|.+. ++.
T Consensus 20 ~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~-~~~ 54 (131)
T cd00079 20 LLKEHLKKGGKVLIFCPSKKMLDELAELLRKP-GIK 54 (131)
T ss_pred HHHhcccCCCcEEEEeCcHHHHHHHHHHHHhc-CCc
Confidence 33333335678899998866677777766553 444
No 169
>PF02863 Arg_repressor_C: Arginine repressor, C-terminal domain; InterPro: IPR020899 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1B4B_B 1B4A_A 3V4G_A 1F9N_F 2P5M_A 1XXA_E 1XXC_C 1XXB_F 3LAJ_D 3BUE_D ....
Probab=24.38 E-value=1.1e+02 Score=18.12 Aligned_cols=25 Identities=20% Similarity=0.303 Sum_probs=20.4
Q ss_pred cCCCcEEEEcCCCcchHHHHHHHHH
Q 032698 93 KEEDRLVVGCQSGARSLHATADLLG 117 (135)
Q Consensus 93 ~~~~~vvlyC~~G~~a~~~~~~l~~ 117 (135)
..+..|.+.|.++..+.....++.+
T Consensus 45 AgdDTilvi~~~~~~a~~l~~~l~~ 69 (70)
T PF02863_consen 45 AGDDTILVICRSEEDAEELEEKLKE 69 (70)
T ss_dssp EESSEEEEEESTTSHHHHHHHHHHT
T ss_pred eCCCEEEEEeCCHHHHHHHHHHHHh
Confidence 4577899999999988888887764
No 170
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=24.33 E-value=1.4e+02 Score=22.75 Aligned_cols=39 Identities=18% Similarity=0.141 Sum_probs=31.1
Q ss_pred HHHHHHHhhccCCCcEEEEcCCCcchHHHHHHHHHhCCCc
Q 032698 83 DFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAVSFR 122 (135)
Q Consensus 83 ~~~~~~~~~~~~~~~vvlyC~~G~~a~~~~~~l~~~gG~~ 122 (135)
+..+.+.+.+.++..+++||..=.........|.+. ||.
T Consensus 176 ~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~-g~~ 214 (256)
T COG2519 176 NVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRER-GFV 214 (256)
T ss_pred HHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhc-Ccc
Confidence 666666666688899999999877888888888776 665
No 171
>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases. The domain forms a apha/beta/apha fold which binds to Adenosine group..
Probab=23.79 E-value=1.6e+02 Score=18.31 Aligned_cols=10 Identities=20% Similarity=0.325 Sum_probs=4.5
Q ss_pred cEEEEcCCCc
Q 032698 97 RLVVGCQSGA 106 (135)
Q Consensus 97 ~vvlyC~~G~ 106 (135)
.++++++.|.
T Consensus 25 ~~~~~~~~~~ 34 (103)
T cd01986 25 VIAVTVDHGI 34 (103)
T ss_pred EEEEEEcCCC
Confidence 3444455443
No 172
>PRK03202 6-phosphofructokinase; Provisional
Probab=23.65 E-value=3.6e+02 Score=21.06 Aligned_cols=77 Identities=10% Similarity=0.145 Sum_probs=43.9
Q ss_pred CeEEecCChHHHhcCCC-------CCCceeCeeccccCCCCCCCChHHHHHHHhhcc--CCCcEEEEcCCCcchHHHHHH
Q 032698 44 YGYLDVRTAEEFKEGHV-------DAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCK--EEDRLVVGCQSGARSLHATAD 114 (135)
Q Consensus 44 ~~iIDvR~~~e~~~ghI-------pgA~~~nip~~~~~~~~~~~~~~~~~~~~~~~~--~~~~vvlyC~~G~~a~~~~~~ 114 (135)
..+|.+.... .||+ -|++.+-+|-. .+..+++.+.+.+... ++.-+|+.+++-......+..
T Consensus 163 v~iVEvMGR~---~G~LAl~~ala~~a~~iliPE~------~~~~~~l~~~i~~r~~~g~~~~vivvsEg~~~~~~l~~~ 233 (320)
T PRK03202 163 VFIVEVMGRH---AGDLALHAGIAGGAEVILIPEV------PFDIEELCAKIKKGRERGKKHAIIVVAEGVMPAEELAKE 233 (320)
T ss_pred EEEEEECCCC---hHHHHHHHHHhcCCCEEEeCCC------CCCHHHHHHHHHHHHHhcCCcEEEEEeCCCCCHHHHHHH
Confidence 4688886533 2222 13344556532 2333456665655422 444466666543346667888
Q ss_pred HHHhCCCceEeecCC
Q 032698 115 LLGAVSFRLRFQFSP 129 (135)
Q Consensus 115 l~~~gG~~~~~~~~~ 129 (135)
+.+..|+++++...|
T Consensus 234 i~~~~~~~~r~~~lG 248 (320)
T PRK03202 234 IEERTGLETRVTVLG 248 (320)
T ss_pred HHHHhCCceEEcccc
Confidence 888889999887654
No 173
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=23.62 E-value=1.6e+02 Score=16.84 Aligned_cols=26 Identities=8% Similarity=-0.000 Sum_probs=13.2
Q ss_pred cEEEEcCCCcchHHHHHHHHHhCCCc
Q 032698 97 RLVVGCQSGARSLHATADLLGAVSFR 122 (135)
Q Consensus 97 ~vvlyC~~G~~a~~~~~~l~~~gG~~ 122 (135)
+|++|...+-.....+..+++..|..
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~ 27 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGIS 27 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCC
Confidence 46666665544444444444444443
No 174
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=23.54 E-value=1.1e+02 Score=27.08 Aligned_cols=32 Identities=6% Similarity=0.230 Sum_probs=24.9
Q ss_pred cCCCcEEEEcC-CCcchHHHHHHHHHhCCCceE
Q 032698 93 KEEDRLVVGCQ-SGARSLHATADLLGAVSFRLR 124 (135)
Q Consensus 93 ~~~~~vvlyC~-~G~~a~~~~~~l~~~gG~~~~ 124 (135)
+|+++|.+.|+ .|.--...|....++.||.++
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAkqaGYsVv 355 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAKQAGYSVV 355 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHHhcCceEE
Confidence 46788999998 566666777778889999954
No 175
>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit. This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This C-terminal region would be the larger subunit
Probab=23.43 E-value=2.2e+02 Score=22.09 Aligned_cols=27 Identities=19% Similarity=0.194 Sum_probs=17.9
Q ss_pred CcEEEEcCCCcchHHHHHHHHHhCCCc
Q 032698 96 DRLVVGCQSGARSLHATADLLGAVSFR 122 (135)
Q Consensus 96 ~~vvlyC~~G~~a~~~~~~l~~~gG~~ 122 (135)
+++++-.++|..|..++.++.+..|.+
T Consensus 17 ~kVvValSGGVDSsvla~ll~~~~G~~ 43 (311)
T TIGR00884 17 AKVIIALSGGVDSSVAAVLAHRAIGDR 43 (311)
T ss_pred CcEEEEecCChHHHHHHHHHHHHhCCC
Confidence 556666677777777777666655554
No 176
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=23.43 E-value=1.1e+02 Score=21.83 Aligned_cols=30 Identities=30% Similarity=0.204 Sum_probs=22.3
Q ss_pred ccCCCcEEEEcC---CCcchHHHHHHHHHhCCCc
Q 032698 92 CKEEDRLVVGCQ---SGARSLHATADLLGAVSFR 122 (135)
Q Consensus 92 ~~~~~~vvlyC~---~G~~a~~~~~~l~~~gG~~ 122 (135)
+.++++|+++++ +|.....+.+.+.+. |-+
T Consensus 119 ~~~g~rVlIVDDVitTGgS~~~~i~~l~~~-Ga~ 151 (187)
T PRK13810 119 LKPEDRIVMLEDVTTSGGSVREAIEVVREA-GAY 151 (187)
T ss_pred CCCcCEEEEEEeccCCChHHHHHHHHHHHC-CCE
Confidence 467888999988 677777777777665 444
No 177
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=23.28 E-value=1.4e+02 Score=22.63 Aligned_cols=88 Identities=20% Similarity=0.252 Sum_probs=46.5
Q ss_pred eCHHHHHHHhh---C-CC-eEEecCChHHHhcCCCCCCceeCeeccccCCCCCCCChHHHHHHHhhccCCCcEEEEcCCC
Q 032698 31 VDVRAAKNLLE---S-GY-GYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSG 105 (135)
Q Consensus 31 is~~el~~~l~---~-~~-~iIDvR~~~e~~~ghIpgA~~~nip~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvlyC~~G 105 (135)
++.+++.++++ . |. .+|.|++.+|....---|+..+-|... +..+...+. +....+...++++ ++++..+|
T Consensus 142 L~~~~l~~l~~~a~~lGle~lVEVh~~~El~~al~~~a~iiGINnR-dL~tf~vd~-~~~~~l~~~ip~~--~~~iseSG 217 (254)
T PF00218_consen 142 LSDDQLEELLELAHSLGLEALVEVHNEEELERALEAGADIIGINNR-DLKTFEVDL-NRTEELAPLIPKD--VIVISESG 217 (254)
T ss_dssp SGHHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTT-SEEEEESB-CTTTCCBHT-HHHHHHHCHSHTT--SEEEEESS
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEECCHHHHHHHHHcCCCEEEEeCc-cccCcccCh-HHHHHHHhhCccc--eeEEeecC
Confidence 56666666654 2 53 799999999986432223322222211 111112111 2223333333544 77788899
Q ss_pred cchHHHHHHHHHhCCCce
Q 032698 106 ARSLHATADLLGAVSFRL 123 (135)
Q Consensus 106 ~~a~~~~~~l~~~gG~~~ 123 (135)
..+..-+..+.+. |++.
T Consensus 218 I~~~~d~~~l~~~-G~da 234 (254)
T PF00218_consen 218 IKTPEDARRLARA-GADA 234 (254)
T ss_dssp -SSHHHHHHHCTT-T-SE
T ss_pred CCCHHHHHHHHHC-CCCE
Confidence 9999988888765 6664
No 178
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=23.13 E-value=1.4e+02 Score=24.97 Aligned_cols=33 Identities=15% Similarity=0.199 Sum_probs=25.0
Q ss_pred CCCcEEEEcC---CCcchHHHHHHHHHhCCCceEee
Q 032698 94 EEDRLVVGCQ---SGARSLHATADLLGAVSFRLRFQ 126 (135)
Q Consensus 94 ~~~~vvlyC~---~G~~a~~~~~~l~~~gG~~~~~~ 126 (135)
++++|+++++ +|.....+++.|++.|.-.+-..
T Consensus 376 ~gkrVlLVDDvIttGtTl~~~~~~Lr~aGAkeV~~~ 411 (500)
T PRK07349 376 AGKRIIIVDDSIVRGTTSRKIVKALRDAGATEVHMR 411 (500)
T ss_pred CCCEEEEEeceeCCcHHHHHHHHHHHHhCCeEEEEE
Confidence 6889999988 68889999988887754444333
No 179
>PRK13809 orotate phosphoribosyltransferase; Provisional
Probab=23.10 E-value=1.1e+02 Score=22.23 Aligned_cols=28 Identities=14% Similarity=0.043 Sum_probs=22.1
Q ss_pred cCCCcEEEEcC---CCcchHHHHHHHHHhCC
Q 032698 93 KEEDRLVVGCQ---SGARSLHATADLLGAVS 120 (135)
Q Consensus 93 ~~~~~vvlyC~---~G~~a~~~~~~l~~~gG 120 (135)
.++++|+++++ +|.....+++.+.+.|+
T Consensus 116 ~~g~~VlIVDDViTTG~Ti~~a~~~L~~~G~ 146 (206)
T PRK13809 116 TPGQTCLVINDMVSSGKSIIETAVALEEEGL 146 (206)
T ss_pred CCCCEEEEEEeccccCHHHHHHHHHHHHCCC
Confidence 57788999988 78888888888877643
No 180
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=22.87 E-value=2.8e+02 Score=21.57 Aligned_cols=22 Identities=23% Similarity=0.255 Sum_probs=13.4
Q ss_pred eCHHHHHHHhhC-CCeEEecCCh
Q 032698 31 VDVRAAKNLLES-GYGYLDVRTA 52 (135)
Q Consensus 31 is~~el~~~l~~-~~~iIDvR~~ 52 (135)
-+-.++.+..+. +..|+|+|.+
T Consensus 74 ~ddpel~~~A~~~g~~i~DvR~p 96 (301)
T PF07755_consen 74 SDDPELAAAAKKNGVRIIDVRKP 96 (301)
T ss_dssp CCHHHHHCCHHCCT--EEETTS-
T ss_pred ccCHHHHHHHHHcCCeEeeccCC
Confidence 445666666665 6889999986
No 181
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=22.73 E-value=1.2e+02 Score=19.97 Aligned_cols=29 Identities=14% Similarity=0.440 Sum_probs=23.1
Q ss_pred CcceeCHHHHHHHhhCC--CeEEecCChHHH
Q 032698 27 EVITVDVRAAKNLLESG--YGYLDVRTAEEF 55 (135)
Q Consensus 27 ~~~~is~~el~~~l~~~--~~iIDvR~~~e~ 55 (135)
....|+.+++.++..+| +.|+|+.+-++-
T Consensus 16 tS~YITLedi~~lV~~g~~f~V~DakTgeDi 46 (107)
T TIGR01848 16 TSSYVTLEDIRDLVREGREFQVVDSKSGDDL 46 (107)
T ss_pred ccceeeHHHHHHHHHCCCeEEEEECCCCchh
Confidence 35679999999999875 689999974443
No 182
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=22.69 E-value=3.2e+02 Score=23.77 Aligned_cols=80 Identities=14% Similarity=0.082 Sum_probs=44.2
Q ss_pred HHHHHHHhhCCCeEEecCChHHHhcCCCCCCceeCeeccccCCCCCCCChHHHHHHHhhccCCCcEEEEcCCCcchHHHH
Q 032698 33 VRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSGARSLHAT 112 (135)
Q Consensus 33 ~~el~~~l~~~~~iIDvR~~~e~~~ghIpgA~~~nip~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvlyC~~G~~a~~~~ 112 (135)
.+|+.+...-+.+.|++..+..... .|.- +..+.. .++ ..+...+......++|++|+|++-..+...+
T Consensus 422 ~~El~~~y~l~vv~IPt~kp~~r~~--~~~~--v~~t~~-----~K~--~aL~~~i~~~~~~~~pvLIft~t~~~se~L~ 490 (656)
T PRK12898 422 AGELWSVYGLPVVRIPTNRPSQRRH--LPDE--VFLTAA-----AKW--AAVAARVRELHAQGRPVLVGTRSVAASERLS 490 (656)
T ss_pred HHHHHHHHCCCeEEeCCCCCcccee--cCCE--EEeCHH-----HHH--HHHHHHHHHHHhcCCCEEEEeCcHHHHHHHH
Confidence 4566666666678888876552221 1111 111110 000 1222233222234688999999888888888
Q ss_pred HHHHHhCCCceE
Q 032698 113 ADLLGAVSFRLR 124 (135)
Q Consensus 113 ~~l~~~gG~~~~ 124 (135)
..|.+. |+++.
T Consensus 491 ~~L~~~-gi~~~ 501 (656)
T PRK12898 491 ALLREA-GLPHQ 501 (656)
T ss_pred HHHHHC-CCCEE
Confidence 888765 77754
No 183
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=22.68 E-value=1.6e+02 Score=21.90 Aligned_cols=29 Identities=21% Similarity=0.167 Sum_probs=20.0
Q ss_pred cCCCcEEEEcCCCcchHHHHHHHHHhCCCc
Q 032698 93 KEEDRLVVGCQSGARSLHATADLLGAVSFR 122 (135)
Q Consensus 93 ~~~~~vvlyC~~G~~a~~~~~~l~~~gG~~ 122 (135)
.+.+++++-.++|..|..++.++.+. |++
T Consensus 10 ~~~~~vlVa~SGGvDSs~ll~la~~~-g~~ 38 (252)
T TIGR00268 10 KEFKKVLIAYSGGVDSSLLAAVCSDA-GTE 38 (252)
T ss_pred HhcCCEEEEecCcHHHHHHHHHHHHh-CCC
Confidence 34455777777788888888777666 555
No 184
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=22.50 E-value=2.7e+02 Score=23.01 Aligned_cols=40 Identities=10% Similarity=0.302 Sum_probs=31.0
Q ss_pred HHHHHHHhh---ccCCCcEEEEcC-CCcchHHHHHHHHHhCCCc
Q 032698 83 DFLKKVRSL---CKEEDRLVVGCQ-SGARSLHATADLLGAVSFR 122 (135)
Q Consensus 83 ~~~~~~~~~---~~~~~~vvlyC~-~G~~a~~~~~~l~~~gG~~ 122 (135)
++.+++.+. +.|+..+.+.++ .|..+...|..+.+..|++
T Consensus 199 ~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l~it 242 (451)
T COG0541 199 ELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEALGIT 242 (451)
T ss_pred HHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhcCCc
Confidence 555555554 688888888887 6888999999888888877
No 185
>PLN02293 adenine phosphoribosyltransferase
Probab=22.35 E-value=1.2e+02 Score=21.70 Aligned_cols=28 Identities=21% Similarity=0.079 Sum_probs=22.6
Q ss_pred cCCCcEEEEcC---CCcchHHHHHHHHHhCC
Q 032698 93 KEEDRLVVGCQ---SGARSLHATADLLGAVS 120 (135)
Q Consensus 93 ~~~~~vvlyC~---~G~~a~~~~~~l~~~gG 120 (135)
.++++|+++++ +|.....+.+.+.+.|+
T Consensus 123 ~~G~rVlIVDDvitTG~T~~~~~~~l~~~Ga 153 (187)
T PLN02293 123 EPGERALVIDDLIATGGTLCAAINLLERAGA 153 (187)
T ss_pred CCCCEEEEEeccccchHHHHHHHHHHHHCCC
Confidence 67889999988 78888888887877755
No 186
>PRK05571 ribose-5-phosphate isomerase B; Provisional
Probab=22.30 E-value=2.7e+02 Score=19.21 Aligned_cols=58 Identities=26% Similarity=0.354 Sum_probs=34.2
Q ss_pred HHHHHhhC-CCeEEecCChHHHhcCCCCCCceeCeeccccCCCCCCCChHHHHHHHhhc--cCCCcEEEEcCCCcchHHH
Q 032698 35 AAKNLLES-GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLC--KEEDRLVVGCQSGARSLHA 111 (135)
Q Consensus 35 el~~~l~~-~~~iIDvR~~~e~~~ghIpgA~~~nip~~~~~~~~~~~~~~~~~~~~~~~--~~~~~vvlyC~~G~~a~~~ 111 (135)
.+.+.|.+ +..++|.-+..+ .. + +.+| ++...+.+.+ .+...-|++|.+|.-.+.+
T Consensus 17 ~l~~~L~~~g~eV~D~G~~~~-~~-----~--~dYp-------------d~a~~va~~V~~g~~~~GIliCGtGiG~sia 75 (148)
T PRK05571 17 EIIEHLEELGHEVIDLGPDSY-DA-----S--VDYP-------------DYAKKVAEAVVAGEADRGILICGTGIGMSIA 75 (148)
T ss_pred HHHHHHHHCCCEEEEcCCCCC-CC-----C--CCHH-------------HHHHHHHHHHHcCCCCEEEEEcCCcHHHHHH
Confidence 34555555 678999865221 10 2 3343 4555454442 3446679999999877776
Q ss_pred HH
Q 032698 112 TA 113 (135)
Q Consensus 112 ~~ 113 (135)
+.
T Consensus 76 AN 77 (148)
T PRK05571 76 AN 77 (148)
T ss_pred Hh
Confidence 65
No 187
>PRK08622 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=22.26 E-value=3e+02 Score=19.61 Aligned_cols=58 Identities=33% Similarity=0.358 Sum_probs=34.8
Q ss_pred HHHHHHhhC-CCeEEecCChHHHhcCCCCCCceeCeeccccCCCCCCCChHHHHHHHhhc--cCCCcEEEEcCCCcchHH
Q 032698 34 RAAKNLLES-GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLC--KEEDRLVVGCQSGARSLH 110 (135)
Q Consensus 34 ~el~~~l~~-~~~iIDvR~~~e~~~ghIpgA~~~nip~~~~~~~~~~~~~~~~~~~~~~~--~~~~~vvlyC~~G~~a~~ 110 (135)
+++.+.|++ +..++|.-+.. . .+ +.+| ++...+...+ .+...-|++|.+|.-.+.
T Consensus 16 ~~l~~~L~~~G~eV~D~G~~~-~------e~--~dYp-------------d~a~~va~~V~~g~~d~GIliCGTGiG~si 73 (171)
T PRK08622 16 MAVSDYLKSKGHEVIDVGTYD-F------TR--THYP-------------IFGKKVGEAVASGEADLGVCICGTGVGISN 73 (171)
T ss_pred HHHHHHHHHCCCEEEEcCCCC-C------CC--CChH-------------HHHHHHHHHHHcCCCcEEEEEcCCcHHHHH
Confidence 345566655 68899987532 1 11 3333 4444444442 345667999999887776
Q ss_pred HHH
Q 032698 111 ATA 113 (135)
Q Consensus 111 ~~~ 113 (135)
++.
T Consensus 74 aAN 76 (171)
T PRK08622 74 AVN 76 (171)
T ss_pred HHh
Confidence 665
No 188
>PRK12829 short chain dehydrogenase; Provisional
Probab=21.84 E-value=1.6e+02 Score=21.18 Aligned_cols=29 Identities=14% Similarity=0.106 Sum_probs=20.9
Q ss_pred CCCcEEEEcCCCcchHHHHHHHHHhCCCce
Q 032698 94 EEDRLVVGCQSGARSLHATADLLGAVSFRL 123 (135)
Q Consensus 94 ~~~~vvlyC~~G~~a~~~~~~l~~~gG~~~ 123 (135)
+++++++...+|.-+...+..|.+. |+++
T Consensus 10 ~~~~vlItGa~g~iG~~~a~~L~~~-g~~V 38 (264)
T PRK12829 10 DGLRVLVTGGASGIGRAIAEAFAEA-GARV 38 (264)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHC-CCEE
Confidence 5567777777777777888877765 6653
No 189
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=21.76 E-value=2.1e+02 Score=22.03 Aligned_cols=39 Identities=15% Similarity=0.258 Sum_probs=31.4
Q ss_pred ccCCCcEEEEcCCCcchHHHHHHHHHhCCCceEeecCCCc
Q 032698 92 CKEEDRLVVGCQSGARSLHATADLLGAVSFRLRFQFSPTK 131 (135)
Q Consensus 92 ~~~~~~vvlyC~~G~~a~~~~~~l~~~gG~~~~~~~~~~~ 131 (135)
++++++|++|.-+|..+......+... ||+.++..+|++
T Consensus 3 ~~~~~~~~~~g~~~~~~~~~~~~~~~~-g~~~v~~V~p~~ 41 (286)
T TIGR01019 3 LDKDTKVIVQGITGSQGSFHTEQMLAY-GTNIVGGVTPGK 41 (286)
T ss_pred ecCCCcEEEecCCcHHHHHHHHHHHhC-CCCEEEEECCCC
Confidence 478899999988888888777777554 777999999983
No 190
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=21.73 E-value=1.1e+02 Score=24.27 Aligned_cols=27 Identities=30% Similarity=0.369 Sum_probs=15.9
Q ss_pred cCCCcEEEEcCCCcchHHHHHHHHHhC
Q 032698 93 KEEDRLVVGCQSGARSLHATADLLGAV 119 (135)
Q Consensus 93 ~~~~~vvlyC~~G~~a~~~~~~l~~~g 119 (135)
+++++|++-.++|..|..++.+|.+.|
T Consensus 3 ~~~~kVlValSGGVDSsvaa~LL~~~G 29 (360)
T PRK14665 3 EKNKRVLLGMSGGTDSSVAAMLLLEAG 29 (360)
T ss_pred CCCCEEEEEEcCCHHHHHHHHHHHHcC
Confidence 345556666666666666666665554
No 191
>PF01624 MutS_I: MutS domain I C-terminus.; InterPro: IPR007695 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the N-terminal domain of proteins in the MutS family of DNA mismatch repair proteins, as well as closely related proteins. The N-terminal domain of MutS is responsible for mismatch recognition and forms a 6-stranded mixed beta-sheet surrounded by three alpha-helices, which is similar to the structure of tRNA endonuclease. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein.; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 3THY_B 3THZ_B 3THW_B 3THX_B 2WTU_A 1OH7_A ....
Probab=21.64 E-value=99 Score=19.85 Aligned_cols=43 Identities=16% Similarity=0.161 Sum_probs=25.2
Q ss_pred HHHHHHHhhccCCCcEEEEcCCCcchHHHHHHHHHhCCCceEeecCCC
Q 032698 83 DFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAVSFRLRFQFSPT 130 (135)
Q Consensus 83 ~~~~~~~~~~~~~~~vvlyC~~G~~a~~~~~~l~~~gG~~~~~~~~~~ 130 (135)
.+...+..++..+..|++|++.+..... .+..--++.-.+|||
T Consensus 65 ~l~~~l~~Ll~~G~~V~i~~q~~~~~~~-----~~~~~R~v~~i~TpG 107 (113)
T PF01624_consen 65 QLDKYLKKLLEAGYRVAIYEQVETPSET-----KGLIEREVTRIYTPG 107 (113)
T ss_dssp GHHHHHHHHHHTT-EEEEEEE-S-HHHH-----SSS--EEEEEEEBTT
T ss_pred HHHHHHHHHHHcCCEEEEEEecCCcccc-----CCCccEEEEEEECcC
Confidence 7888888886679999999886443332 112233466667776
No 192
>PRK08384 thiamine biosynthesis protein ThiI; Provisional
Probab=21.53 E-value=1.2e+02 Score=24.32 Aligned_cols=25 Identities=16% Similarity=0.092 Sum_probs=11.4
Q ss_pred EEEEcCCCcchHHHHHHHHHhCCCce
Q 032698 98 LVVGCQSGARSLHATADLLGAVSFRL 123 (135)
Q Consensus 98 vvlyC~~G~~a~~~~~~l~~~gG~~~ 123 (135)
+++--++|..|..+++.++++ |+.+
T Consensus 183 vlvllSGGiDSpVAa~ll~kr-G~~V 207 (381)
T PRK08384 183 VVALLSGGIDSPVAAFLMMKR-GVEV 207 (381)
T ss_pred EEEEEeCChHHHHHHHHHHHc-CCeE
Confidence 333334445555555444443 5543
No 193
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=21.52 E-value=1.6e+02 Score=19.42 Aligned_cols=35 Identities=17% Similarity=0.093 Sum_probs=21.7
Q ss_pred CCCcEEEEcCCCcchHHHHHHHHHhCCCceEeecCCC
Q 032698 94 EEDRLVVGCQSGARSLHATADLLGAVSFRLRFQFSPT 130 (135)
Q Consensus 94 ~~~~vvlyC~~G~~a~~~~~~l~~~gG~~~~~~~~~~ 130 (135)
++++++++.+ |+.+..++..|... |++..+-++-+
T Consensus 11 ~~~~vlviGa-Gg~ar~v~~~L~~~-g~~~i~i~nRt 45 (135)
T PF01488_consen 11 KGKRVLVIGA-GGAARAVAAALAAL-GAKEITIVNRT 45 (135)
T ss_dssp TTSEEEEESS-SHHHHHHHHHHHHT-TSSEEEEEESS
T ss_pred CCCEEEEECC-HHHHHHHHHHHHHc-CCCEEEEEECC
Confidence 4566666654 56666666666665 77766655544
No 194
>cd06269 PBP1_glutamate_receptors_like Family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors. This CD represents the ligand-binding domain of the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors, all of which are structurally similar and related to the periplasmic-binding fold type I family. The family C GPCRs consist of metabotropic glutamate receptor (mGluR) receptors, a calcium-sensing receptor (CaSR), gamma-aminobutyric receptors (GABAb), the promiscuous L-alpha-amino acid receptor GPR6A, families of taste and pheromone receptors, and orphan receptors. Truncated splicing va
Probab=21.34 E-value=2.6e+02 Score=19.95 Aligned_cols=49 Identities=12% Similarity=0.111 Sum_probs=29.1
Q ss_pred HHHHHHHhhccCCCcEEEEcCCCcchHHHHHHHHHhCC-CceEeecCCCc
Q 032698 83 DFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAVS-FRLRFQFSPTK 131 (135)
Q Consensus 83 ~~~~~~~~~~~~~~~vvlyC~~G~~a~~~~~~l~~~gG-~~~~~~~~~~~ 131 (135)
.+...+.++-..+..||+.|..+.........+.+.|. ....+.++..|
T Consensus 183 ~~~~~l~~l~~~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~i~~~~~ 232 (298)
T cd06269 183 DIRRLLKELKSSTARVIVVFSSEEDALRLLEEAVELGMMTGYHWIITDLW 232 (298)
T ss_pred HHHHHHHHHHhcCCcEEEEEechHHHHHHHHHHHHcCCCCCeEEEEEChh
Confidence 45555555423344788888877777777777777654 23444444444
No 195
>PRK13812 orotate phosphoribosyltransferase; Provisional
Probab=21.22 E-value=1.3e+02 Score=21.25 Aligned_cols=27 Identities=26% Similarity=0.270 Sum_probs=20.7
Q ss_pred cCCCcEEEEcC---CCcchHHHHHHHHHhC
Q 032698 93 KEEDRLVVGCQ---SGARSLHATADLLGAV 119 (135)
Q Consensus 93 ~~~~~vvlyC~---~G~~a~~~~~~l~~~g 119 (135)
.++++|+++++ +|.....+++.+.+.|
T Consensus 105 ~~g~~VlIVDDvitTG~Tl~~~~~~l~~~G 134 (176)
T PRK13812 105 DEGEEVVVLEDIATTGQSAVDAVEALREAG 134 (176)
T ss_pred CCcCEEEEEEEeeCCCHHHHHHHHHHHHCC
Confidence 57888988887 6777777777777664
No 196
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=21.21 E-value=1.4e+02 Score=23.75 Aligned_cols=29 Identities=14% Similarity=0.162 Sum_probs=16.7
Q ss_pred CCCcEEEEcCCCcchHHHHHHHHHhCCCce
Q 032698 94 EEDRLVVGCQSGARSLHATADLLGAVSFRL 123 (135)
Q Consensus 94 ~~~~vvlyC~~G~~a~~~~~~l~~~gG~~~ 123 (135)
.+.++++-.++|..|..+++++.+. |+++
T Consensus 171 ~~~kvlvllSGGiDS~vaa~ll~kr-G~~V 199 (371)
T TIGR00342 171 TQGKVLALLSGGIDSPVAAFMMMKR-GCRV 199 (371)
T ss_pred cCCeEEEEecCCchHHHHHHHHHHc-CCeE
Confidence 3444555556666666666655554 5553
No 197
>TIGR01090 apt adenine phosphoribosyltransferase. A phylogenetic analysis suggested omitting the bi-directional best hit homologs from the spirochetes from the seed for this model and making only tentative predictions of adenine phosphoribosyltransferase function for this lineage.
Probab=21.16 E-value=1.2e+02 Score=21.06 Aligned_cols=31 Identities=10% Similarity=0.014 Sum_probs=23.2
Q ss_pred cCCCcEEEEcC---CCcchHHHHHHHHHhCCCceE
Q 032698 93 KEEDRLVVGCQ---SGARSLHATADLLGAVSFRLR 124 (135)
Q Consensus 93 ~~~~~vvlyC~---~G~~a~~~~~~l~~~gG~~~~ 124 (135)
.++++|+++++ +|.....+++.+.+.| -+.+
T Consensus 107 ~~gk~VLIVDDIitTG~Tl~~a~~~L~~~G-a~~v 140 (169)
T TIGR01090 107 KPGQRVLIVDDLLATGGTAEATDELIRKLG-GEVV 140 (169)
T ss_pred CCcCEEEEEeccccchHHHHHHHHHHHHcC-CEEE
Confidence 47888999988 7888888888777764 4533
No 198
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=20.95 E-value=1.7e+02 Score=24.22 Aligned_cols=31 Identities=23% Similarity=0.083 Sum_probs=23.8
Q ss_pred CCCcEEEEcC---CCcchHHHHHHHHHhCCCceEe
Q 032698 94 EEDRLVVGCQ---SGARSLHATADLLGAVSFRLRF 125 (135)
Q Consensus 94 ~~~~vvlyC~---~G~~a~~~~~~l~~~gG~~~~~ 125 (135)
++++|+++++ +|......++.|++. |-+.++
T Consensus 347 ~gk~VlLVDDvittGtTl~~~~~~Lk~a-GA~eV~ 380 (471)
T PRK06781 347 EGKRVVMIDDSIVRGTTSKRIVRMLREA-GATEVH 380 (471)
T ss_pred CCceEEEEeceeccchHHHHHHHHHHHc-CCcEEE
Confidence 4788999988 688888888888776 445443
No 199
>PRK13811 orotate phosphoribosyltransferase; Provisional
Probab=20.90 E-value=1.3e+02 Score=21.07 Aligned_cols=26 Identities=23% Similarity=0.256 Sum_probs=19.2
Q ss_pred CCCcEEEEcC---CCcchHHHHHHHHHhC
Q 032698 94 EEDRLVVGCQ---SGARSLHATADLLGAV 119 (135)
Q Consensus 94 ~~~~vvlyC~---~G~~a~~~~~~l~~~g 119 (135)
++++++++++ +|.....+.+.+.+.|
T Consensus 103 ~g~~VlIVDDvi~TG~T~~~~~~~l~~~G 131 (170)
T PRK13811 103 KGKRVLLVEDVTTSGGSALYGIEQLRAAG 131 (170)
T ss_pred CCCEEEEEEecccccHHHHHHHHHHHHCC
Confidence 6788888877 6777777777776654
No 200
>PRK14071 6-phosphofructokinase; Provisional
Probab=20.85 E-value=4.3e+02 Score=21.00 Aligned_cols=21 Identities=5% Similarity=-0.075 Sum_probs=15.6
Q ss_pred HHHHHHHHHhCCCceEeecCC
Q 032698 109 LHATADLLGAVSFRLRFQFSP 129 (135)
Q Consensus 109 ~~~~~~l~~~gG~~~~~~~~~ 129 (135)
...+..+.+..|++.++...|
T Consensus 263 ~~l~~~i~~~~g~~~r~~~lG 283 (360)
T PRK14071 263 QYLAEQIAERTGAETRVTVLG 283 (360)
T ss_pred HHHHHHHHHhcCCCeeEEecC
Confidence 446777778789998887654
No 201
>PTZ00110 helicase; Provisional
Probab=20.79 E-value=2.6e+02 Score=23.36 Aligned_cols=32 Identities=9% Similarity=0.098 Sum_probs=24.1
Q ss_pred cCCCcEEEEcCCCcchHHHHHHHHHhCCCceEe
Q 032698 93 KEEDRLVVGCQSGARSLHATADLLGAVSFRLRF 125 (135)
Q Consensus 93 ~~~~~vvlyC~~G~~a~~~~~~l~~~gG~~~~~ 125 (135)
.++.+++|||++-..+..++..|.. .|+.+..
T Consensus 375 ~~~~k~LIF~~t~~~a~~l~~~L~~-~g~~~~~ 406 (545)
T PTZ00110 375 RDGDKILIFVETKKGADFLTKELRL-DGWPALC 406 (545)
T ss_pred ccCCeEEEEecChHHHHHHHHHHHH-cCCcEEE
Confidence 3677899999988888888887765 4777543
No 202
>KOG1416 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD10 [Translation, ribosomal structure and biogenesis]
Probab=20.74 E-value=1.2e+02 Score=25.12 Aligned_cols=38 Identities=11% Similarity=-0.018 Sum_probs=26.5
Q ss_pred cCCCcEEEEcCCCcchHHHHHHHHHhCCCceEeecCCCc
Q 032698 93 KEEDRLVVGCQSGARSLHATADLLGAVSFRLRFQFSPTK 131 (135)
Q Consensus 93 ~~~~~vvlyC~~G~~a~~~~~~l~~~gG~~~~~~~~~~~ 131 (135)
.+.+|+|+||.-..--.....+|.+.+++. --.|+-+|
T Consensus 378 ~pSrp~viy~q~ke~L~e~~~~L~~~~~vi-nL~ite~w 415 (475)
T KOG1416|consen 378 APSRPIVIYSQYKEPLQECYHKLYQRGKVI-NLSITETW 415 (475)
T ss_pred CCCCCEEEeechhHHHHHHHHHHhhcCceE-eeeechhh
Confidence 458999999997777777788888776654 33344333
No 203
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=20.64 E-value=2.2e+02 Score=21.09 Aligned_cols=26 Identities=31% Similarity=0.332 Sum_probs=18.5
Q ss_pred ccCCCcEEEEcCCCcchHHHHHHHHH
Q 032698 92 CKEEDRLVVGCQSGARSLHATADLLG 117 (135)
Q Consensus 92 ~~~~~~vvlyC~~G~~a~~~~~~l~~ 117 (135)
+.++++|++-+++|..|...+.++.+
T Consensus 26 i~~~~kilVa~SGG~DS~~LL~ll~~ 51 (258)
T PRK10696 26 IEEGDRVMVCLSGGKDSYTLLDILLN 51 (258)
T ss_pred CCCCCEEEEEecCCHHHHHHHHHHHH
Confidence 46677788888888877777766643
No 204
>COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=20.61 E-value=2e+02 Score=21.23 Aligned_cols=36 Identities=19% Similarity=0.275 Sum_probs=26.8
Q ss_pred CCCcEEEEcC-----CCc----chHHHHHHHHHhCCCceEeecCC
Q 032698 94 EEDRLVVGCQ-----SGA----RSLHATADLLGAVSFRLRFQFSP 129 (135)
Q Consensus 94 ~~~~vvlyC~-----~G~----~a~~~~~~l~~~gG~~~~~~~~~ 129 (135)
+..+|.++|- +|. ....+++.|.+.|.-+.||+|-|
T Consensus 26 ~~~~iAli~HPHPl~gGtm~nkvv~~la~~l~~~G~atlRfNfRg 70 (210)
T COG2945 26 PAAPIALICHPHPLFGGTMNNKVVQTLARALVKRGFATLRFNFRG 70 (210)
T ss_pred CCCceEEecCCCccccCccCCHHHHHHHHHHHhCCceEEeecccc
Confidence 5678999987 243 36677777778877789999954
No 205
>PLN02486 aminoacyl-tRNA ligase
Probab=20.57 E-value=2.3e+02 Score=22.83 Aligned_cols=46 Identities=15% Similarity=0.199 Sum_probs=31.3
Q ss_pred HHHHHHHhhccCCCcEEEEcCCCcc----------hHHHHHHHHHhCCCceEeecCC
Q 032698 83 DFLKKVRSLCKEEDRLVVGCQSGAR----------SLHATADLLGAVSFRLRFQFSP 129 (135)
Q Consensus 83 ~~~~~~~~~~~~~~~vvlyC~~G~~----------a~~~~~~l~~~gG~~~~~~~~~ 129 (135)
++...+... ..++|+.+|++-+-. ......++.+.+|..+..+++.
T Consensus 60 d~~~~l~~~-e~~~~~~vYtG~~PSg~~lHlGHlv~~~~~~~lQ~~~~~~~~I~iaD 115 (383)
T PLN02486 60 DLEEILDAY-EKGEKFYLYTGRGPSSEALHLGHLIPFMFTKYLQDAFKVPLVIQLTD 115 (383)
T ss_pred CHHHHHHHH-hcCCCeEEEeCCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 554555444 678899999984322 2345667888889888887764
No 206
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=20.49 E-value=2e+02 Score=26.20 Aligned_cols=36 Identities=19% Similarity=0.313 Sum_probs=27.7
Q ss_pred CCCcEEEEcCCCcchHHHHHHHHHhCCCceEeecCCC
Q 032698 94 EEDRLVVGCQSGARSLHATADLLGAVSFRLRFQFSPT 130 (135)
Q Consensus 94 ~~~~vvlyC~~G~~a~~~~~~l~~~gG~~~~~~~~~~ 130 (135)
++++++|+|++..........|.+..|++.. .|.|+
T Consensus 492 ~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~-~ihG~ 527 (956)
T PRK04914 492 RSEKVLVICAKAATALQLEQALREREGIRAA-VFHEG 527 (956)
T ss_pred CCCeEEEEeCcHHHHHHHHHHHhhccCeeEE-EEECC
Confidence 4678999999988888888888766788843 45543
No 207
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=20.47 E-value=1.7e+02 Score=19.20 Aligned_cols=39 Identities=10% Similarity=0.130 Sum_probs=26.2
Q ss_pred HHHHHHHhhccCCCcEEEEcCCCcchHHHHHHHHHhCCC
Q 032698 83 DFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAVSF 121 (135)
Q Consensus 83 ~~~~~~~~~~~~~~~vvlyC~~G~~a~~~~~~l~~~gG~ 121 (135)
++...+..+...+.||+++...|.--..+|+.+....+.
T Consensus 9 ~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~ 47 (138)
T PF14532_consen 9 RLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSGR 47 (138)
T ss_dssp HHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTT
T ss_pred HHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCc
Confidence 344444444466788999999888777788877776544
No 208
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=20.44 E-value=2.9e+02 Score=21.21 Aligned_cols=37 Identities=24% Similarity=0.242 Sum_probs=27.5
Q ss_pred CCcEEEEcCCCcchHHHHHHHHHhCCCceEeecCCCccc
Q 032698 95 EDRLVVGCQSGARSLHATADLLGAVSFRLRFQFSPTKEA 133 (135)
Q Consensus 95 ~~~vvlyC~~G~~a~~~~~~l~~~gG~~~~~~~~~~~~~ 133 (135)
-+-+|+-|++ -++.+...|++...+.++-.+++-|.|
T Consensus 68 ik~lVIACNT--ASa~al~~LR~~~~iPVvGviPaik~A 104 (269)
T COG0796 68 IKALVIACNT--ASAVALEDLREKFDIPVVGVIPAIKPA 104 (269)
T ss_pred CCEEEEecch--HHHHHHHHHHHhCCCCEEEeccchHHH
Confidence 3558999986 667788888888888888888554443
No 209
>PF13399 LytR_C: LytR cell envelope-related transcriptional attenuator
Probab=20.38 E-value=2.1e+02 Score=17.29 Aligned_cols=15 Identities=13% Similarity=0.251 Sum_probs=6.4
Q ss_pred hHHHHHHHHHhCCCce
Q 032698 108 SLHATADLLGAVSFRL 123 (135)
Q Consensus 108 a~~~~~~l~~~gG~~~ 123 (135)
+.+++.+|... ||++
T Consensus 18 A~~~a~~L~~~-Gf~v 32 (90)
T PF13399_consen 18 AARVADALRNR-GFTV 32 (90)
T ss_pred HHHHHHHHHHC-CCce
Confidence 44444444332 4543
No 210
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=20.36 E-value=5.1e+02 Score=21.56 Aligned_cols=37 Identities=22% Similarity=0.244 Sum_probs=22.6
Q ss_pred HHHHHHHhhccCCCcEEEEcCCCcchHHHHHHHHHhCCCc
Q 032698 83 DFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAVSFR 122 (135)
Q Consensus 83 ~~~~~~~~~~~~~~~vvlyC~~G~~a~~~~~~l~~~gG~~ 122 (135)
++.+.+.+. +++-||+++.++|.- ..++. ..+.|-|+
T Consensus 65 ~ll~~i~~~-~~~~pVI~~Tg~g~i-~~AV~-A~k~GA~D 101 (464)
T COG2204 65 ELLKEIKSR-DPDLPVIVMTGHGDI-DTAVE-ALRLGAFD 101 (464)
T ss_pred HHHHHHHhh-CCCCCEEEEeCCCCH-HHHHH-HHhcCcce
Confidence 566667666 788999998876542 22233 33555544
No 211
>PRK09273 hypothetical protein; Provisional
Probab=20.23 E-value=3.7e+02 Score=19.88 Aligned_cols=63 Identities=19% Similarity=0.211 Sum_probs=37.2
Q ss_pred eCHHHHHHHhhC-CCeEEecCChHHHhcCCCCCCceeCeeccccCCCCCCCChHHHHHHHhhc--cCCCcEEEEcCCCcc
Q 032698 31 VDVRAAKNLLES-GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLC--KEEDRLVVGCQSGAR 107 (135)
Q Consensus 31 is~~el~~~l~~-~~~iIDvR~~~e~~~ghIpgA~~~nip~~~~~~~~~~~~~~~~~~~~~~~--~~~~~vvlyC~~G~~ 107 (135)
+=.+++.+.+.+ +..++|+-... ..+ .+ +.+| ++.......+ ...+..|+.|.+|.-
T Consensus 17 ~i~~~L~~~L~~~G~eV~D~G~~~---~~~--~s--~dYp-------------d~a~~vA~~V~~g~~d~GIliCGTGiG 76 (211)
T PRK09273 17 IIYEALKKVADPKGHEVFNYGMYD---EED--HQ--LTYV-------------QNGIMASILLNSKAVDFVVTGCGTGQG 76 (211)
T ss_pred HHHHHHHHHHHHCCCEEEEeCCCC---CCC--CC--CChH-------------HHHHHHHHHHHcCCCCEEEEEcCcHHH
Confidence 445677777766 78899987531 110 01 3333 4444444442 344668999999876
Q ss_pred hHHHHH
Q 032698 108 SLHATA 113 (135)
Q Consensus 108 a~~~~~ 113 (135)
...++.
T Consensus 77 ~siAAN 82 (211)
T PRK09273 77 AMLALN 82 (211)
T ss_pred HHHHHh
Confidence 666654
No 212
>PRK07322 adenine phosphoribosyltransferase; Provisional
Probab=20.20 E-value=1.7e+02 Score=20.57 Aligned_cols=28 Identities=11% Similarity=-0.019 Sum_probs=21.0
Q ss_pred CCCcEEEEcC---CCcchHHHHHHHHHhCCC
Q 032698 94 EEDRLVVGCQ---SGARSLHATADLLGAVSF 121 (135)
Q Consensus 94 ~~~~vvlyC~---~G~~a~~~~~~l~~~gG~ 121 (135)
++++|+++++ +|.....+++.+.+.|+-
T Consensus 119 ~gk~VLIVDDiitTG~Tl~aa~~~L~~~GA~ 149 (178)
T PRK07322 119 KGKRVAIVDDVVSTGGTLTALERLVERAGGQ 149 (178)
T ss_pred CCCEEEEEeccccccHHHHHHHHHHHHcCCE
Confidence 5788999988 687788878777776543
No 213
>COG1560 HtrB Lauroyl/myristoyl acyltransferase [Cell envelope biogenesis, outer membrane]
Probab=20.14 E-value=2.4e+02 Score=21.96 Aligned_cols=38 Identities=3% Similarity=-0.136 Sum_probs=26.4
Q ss_pred HHhhccCCCcEEEEcCCCcchHHHHHHHHHhCCC-ceEe
Q 032698 88 VRSLCKEEDRLVVGCQSGARSLHATADLLGAVSF-RLRF 125 (135)
Q Consensus 88 ~~~~~~~~~~vvlyC~~G~~a~~~~~~l~~~gG~-~~~~ 125 (135)
+.+..+.++++|+.|.+.........++...++. +..|
T Consensus 115 l~e~l~~~~gvIl~~~H~gn~E~~~~~l~~~~~~~~~~y 153 (308)
T COG1560 115 LEEALANGRGVILVTPHFGNWELGGRALAQQGPKVTAMY 153 (308)
T ss_pred HHHHHHcCCCEEEEecCcchHHHHHHHHHHhCCCeeEEe
Confidence 4443467889999999877777777777766543 4444
No 214
>TIGR03527 selenium_YedF selenium metabolism protein YedF. Members of this protein family are about 200 amino acids in size, and include the uncharacterized YedF protein of Escherichia coli. This family shares an N-terminal domain, modeled by pfam01206, with the sulfurtransferase TusA (also called SirA). The C-terminal domain includes a typical redox-active disulfide motif, CGXC. This protein family found only among those genomes that also carry the selenium donor protein SelD, and its connection to selenium metabolism is indicated by the method of partial phylogenetic profiling vs. SelD. Its gene typically is found next to selD. Members of this family are found even when selenocysteine and selenouridine biosynthesis pathways are, except for SelD, completely absent, as in Enterococcus faecalis. Its role in selenium metabolism is unclear, but may include either detoxification or a role in labile selenoprotein biosynthesis.
Probab=20.13 E-value=2.8e+02 Score=19.99 Aligned_cols=41 Identities=17% Similarity=0.110 Sum_probs=24.3
Q ss_pred HHHHHHHhhccCCCcEEEEcCCCcchHHHHHHHHHhCCCceEe
Q 032698 83 DFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAVSFRLRF 125 (135)
Q Consensus 83 ~~~~~~~~~~~~~~~vvlyC~~G~~a~~~~~~l~~~gG~~~~~ 125 (135)
...+.+.++ +++..+.+..+.........+|+.+ .||++..
T Consensus 14 ~tKkal~~l-~~g~~L~VlvD~~~a~~nV~~~~~~-~G~~v~~ 54 (194)
T TIGR03527 14 LTKKALDEL-GEEGVLTVIVDNEAAKENVSKFATS-LGYEVEV 54 (194)
T ss_pred HHHHHHHcC-CCCCEEEEEECCccHHHHHHHHHHH-cCCEEEE
Confidence 334445444 5566666666655555666666655 4887654
No 215
>PF10678 DUF2492: Protein of unknown function (DUF2492); InterPro: IPR019620 This entry describes a family of small cytosolic proteins, about 80 amino acids in length, in which the eight invariant residues include three His residues and two Cys residues. Two pairs of these invariant residues occur in motifs HxH (where x is A or G) and CxH, both of which suggest metal-binding activity. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulphatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulphur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulphatase/maturase systems.
Probab=20.13 E-value=2.3e+02 Score=17.46 Aligned_cols=42 Identities=12% Similarity=0.052 Sum_probs=31.1
Q ss_pred ChHHHHHHHhhccCCCcEEEEcCCCcchHHHHHHHHHhCCCc
Q 032698 81 NPDFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAVSFR 122 (135)
Q Consensus 81 ~~~~~~~~~~~~~~~~~vvlyC~~G~~a~~~~~~l~~~gG~~ 122 (135)
.+++.+.+.+.+..+.++......|..+......|.++|-|.
T Consensus 22 ~~~L~~ai~~~FG~~arFhTCSae~m~a~eLv~FL~~rgKfi 63 (78)
T PF10678_consen 22 KEELKAAIIEKFGEDARFHTCSAEGMTADELVDFLEERGKFI 63 (78)
T ss_pred HHHHHHHHHHHhCCCceEEecCCCCCCHHHHHHHHHHcCCEe
Confidence 346666666656777777665558899999999999887665
Done!