BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>032699
MRRHSTMSEERLIRREPKERRRIIMMDPVIWHKIAAVSGVAALGLGTYGAHGFKPQNPSF
KEVWQTASLYHLVHTAALVAAPITKNPNIVSVVAGISEVLLLFIDSTYISQNSVLCWLIH
SDEIISFMCEYVLDK

High Scoring Gene Products

Symbol, full name Information P value
AT2G04900 protein from Arabidopsis thaliana 5.7e-20
DDB_G0269766
DUF423 family protein
gene from Dictyostelium discoideum 1.3e-06
Y106G6H.8 gene from Caenorhabditis elegans 6.3e-05
tmem256
transmembrane protein 256
gene_product from Danio rerio 0.00027

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  032699
        (135 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2045019 - symbol:AT2G04900 "AT2G04900" species...   237  5.7e-20   1
DICTYBASE|DDB_G0269766 - symbol:DDB_G0269766 "DUF423 fami...   111  1.3e-06   1
WB|WBGene00013720 - symbol:Y106G6H.8 species:6239 "Caenor...    95  6.3e-05   1
ZFIN|ZDB-GENE-050417-92 - symbol:tmem256 "transmembrane p...    89  0.00027   1


>TAIR|locus:2045019 [details] [associations]
            symbol:AT2G04900 "AT2G04900" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
            "mitochondrion" evidence=ISM] EMBL:CP002685 EMBL:AC006955
            EMBL:AC007211 HOGENOM:HOG000252654 InterPro:IPR006696 Pfam:PF04241
            OMA:HLIHSAV IPI:IPI00544209 PIR:H84462 RefSeq:NP_565317.1
            UniGene:At.14506 STRING:Q9SI36 PRIDE:Q9SI36
            EnsemblPlants:AT2G04900.1 GeneID:815037 KEGG:ath:AT2G04900
            TAIR:At2g04900 InParanoid:Q9SI36 PhylomeDB:Q9SI36
            ProtClustDB:CLSN2687972 Genevestigator:Q9SI36 Uniprot:Q9SI36
        Length = 128

 Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
 Identities = 45/73 (61%), Positives = 52/73 (71%)

Query:    26 MDPVIWHKIXXXXXXXXXXXXTYGAHGFKPQNPSFKEVWQTASLYHLVHTAALVAAPITK 85
             MDP +WHK+            TYGAH FKP+NPS+K+VWQTASLYHLVHTAALV+AP TK
Sbjct:    18 MDPRMWHKVAAISGMAALGLGTYGAHVFKPENPSYKQVWQTASLYHLVHTAALVSAPSTK 77

Query:    86 NPNIVS--VVAGI 96
              PNI    + AGI
Sbjct:    78 YPNIFGGLLTAGI 90


>DICTYBASE|DDB_G0269766 [details] [associations]
            symbol:DDB_G0269766 "DUF423 family protein"
            species:44689 "Dictyostelium discoideum" [GO:0044351
            "macropinocytosis" evidence=RCA] dictyBase:DDB_G0269766
            EMBL:AAFI02000005 InterPro:IPR006696 Pfam:PF04241 eggNOG:COG2363
            RefSeq:XP_646261.1 GeneID:8617217 KEGG:ddi:DDB_G0269766
            InParanoid:Q55D70 OMA:HLIHSAV ProtClustDB:CLSZ2431402
            Uniprot:Q55D70
        Length = 120

 Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 26/81 (32%), Positives = 38/81 (46%)

Query:    30 IWHKIXXXXXXXXXXXXTYGAHGFKPQ--NPSFKEVWQTASLYHLVHTAALVAAPITKNP 87
             +W KI             YG HG K +  + + +++W+TA  YHL H+ AL   P +   
Sbjct:     4 LWWKIGGISACSAIISGAYGGHGLKKKVTDVARQDIWKTAQQYHLYHSFALFLVPFSTQQ 63

Query:    88 NIVSVVAGISEVLLLFIDSTY 108
             NIV  +      +LLF  S Y
Sbjct:    64 NIVGPM--FLTGILLFSGSLY 82


>WB|WBGene00013720 [details] [associations]
            symbol:Y106G6H.8 species:6239 "Caenorhabditis elegans"
            [GO:0016021 "integral to membrane" evidence=IEA] [GO:0040010
            "positive regulation of growth rate" evidence=IMP] [GO:0007413
            "axonal fasciculation" evidence=IMP] GO:GO:0040010 GO:GO:0007413
            EMBL:AL032631 GeneTree:ENSGT00390000000334 HOGENOM:HOG000252654
            OMA:AYGSHVL InterPro:IPR006696 Pfam:PF04241 eggNOG:COG2363
            RefSeq:NP_492733.2 STRING:Q9U2Z9 PaxDb:Q9U2Z9
            EnsemblMetazoa:Y106G6H.8 GeneID:190926 KEGG:cel:CELE_Y106G6H.8
            UCSC:Y106G6H.8 CTD:190926 WormBase:Y106G6H.8 InParanoid:Q9U2Z9
            NextBio:947402 Uniprot:Q9U2Z9
        Length = 156

 Score = 95 (38.5 bits), Expect = 6.3e-05, P = 6.3e-05
 Identities = 25/78 (32%), Positives = 39/78 (50%)

Query:    26 MDPVIWHKIXXXXXXXXXXXXTYGAHGFKPQNPSFKE----VWQTASLYHLVHTAALVAA 81
             M P+I  ++             YG+H  +  NPS  E     + TAS YHL+H+ AL+A+
Sbjct:    45 MSPII--RLAGLSGAVAISLGAYGSHVLR-DNPSIDERRRTAFDTASRYHLIHSLALLAS 101

Query:    82 PITKNPNIVS--VVAGIS 97
             P  + P + +    AGI+
Sbjct:   102 PAARFPLVTAGLFTAGIT 119


>ZFIN|ZDB-GENE-050417-92 [details] [associations]
            symbol:tmem256 "transmembrane protein 256"
            species:7955 "Danio rerio" [GO:0003674 "molecular_function"
            evidence=ND] [GO:0016020 "membrane" evidence=IEA] [GO:0016021
            "integral to membrane" evidence=IEA] ZFIN:ZDB-GENE-050417-92
            GO:GO:0016021 OrthoDB:EOG4ZW5CQ InterPro:IPR006696 Pfam:PF04241
            EMBL:BC092829 IPI:IPI00570108 RefSeq:NP_001017620.1
            UniGene:Dr.76561 STRING:Q568J8 PRIDE:Q568J8 GeneID:550283
            KEGG:dre:550283 eggNOG:NOG254678 HOVERGEN:HBG107755
            InParanoid:Q568J8 NextBio:20879544 Bgee:Q568J8 Uniprot:Q568J8
        Length = 114

 Score = 89 (36.4 bits), Expect = 0.00027, P = 0.00027
 Identities = 18/48 (37%), Positives = 28/48 (58%)

Query:    48 YGAHGFKPQNPSF--KEVWQTASLYHLVHTAALVAAPITKNPNIVSVV 93
             YGAHGF+    S   +E++ TA+ YH  H+ AL+ A   + P +  V+
Sbjct:    24 YGAHGFRRSEASDYQRELFDTANKYHFYHSLALLGAARCRKPALAGVI 71


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.134   0.421    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      135       107   0.00091  102 3  11 22  0.37    30
                                                     29  0.40    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  592 (63 KB)
  Total size of DFA:  135 KB (2083 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.17u 0.14s 10.31t   Elapsed:  00:00:01
  Total cpu time:  10.17u 0.14s 10.31t   Elapsed:  00:00:01
  Start:  Thu May  9 22:28:51 2013   End:  Thu May  9 22:28:52 2013

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