BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032699
(135 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A4K526|TM256_BUFGR Transmembrane protein 256 homolog OS=Bufo gargarizans PE=3 SV=1
Length = 114
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 49/81 (60%), Gaps = 4/81 (4%)
Query: 30 IWHKIAAVSGVAALGLGTYGAHGFK--PQNPSFKEVWQTASLYHLVHTAALVAAPITKNP 87
+W ++ AVSG A+ G YGAHGF+ ++ KE+++T + YH +H+ AL+A P + P
Sbjct: 6 VWGRLGAVSGALAVTAGAYGAHGFRRSDRDEYLKELFETGNRYHFLHSLALLAVPHCRRP 65
Query: 88 NIVSVVAGISEVLLLFIDSTY 108
+ + ++ ++LF + Y
Sbjct: 66 LLAGSL--LTSGIVLFSGTFY 84
>sp|Q568J8|TM256_DANRE Transmembrane protein 256 OS=Danio rerio GN=tmem256 PE=3 SV=1
Length = 114
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 32 HKIAAVSGVAALGLGTYGAHGFKPQNPS--FKEVWQTASLYHLVHTAALVAAPITKNPNI 89
++A +SG A+ G YGAHGF+ S +E++ TA+ YH H+ AL+ A + P +
Sbjct: 8 QRVAGISGALAVAAGAYGAHGFRRSEASDYQRELFDTANKYHFYHSLALLGAARCRKPAL 67
Query: 90 VSVV 93
V+
Sbjct: 68 AGVI 71
>sp|Q2KI29|TM256_BOVIN Transmembrane protein 256 OS=Bos taurus GN=TMEM256 PE=3 SV=1
Length = 113
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 25 MMDP-VIWHKIAAVSGVAALGLGTYGAHGFKPQNPSFKEVWQTASLYHLVHTAALVAAPI 83
M P + ++ A+SG ALGL +YGAHG + + KE++ + +H +H+ AL+A P+
Sbjct: 1 MAGPGAAFRRLGALSGAGALGLASYGAHGAQFPDAYGKELFDKTNKHHFLHSLALLAVPL 60
Query: 84 TKNP 87
+ P
Sbjct: 61 CRKP 64
>sp|Q8N2U0|TM256_HUMAN Transmembrane protein 256 OS=Homo sapiens GN=TMEM256 PE=2 SV=1
Length = 113
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 25 MMDPVI-WHKIAAVSGVAALGLGTYGAHGFKPQNPSFKEVWQTASLYHLVHTAALVAAPI 83
M P + ++ A+SG AALG +YGAHG + + KE++ A+ +H +H+ AL+ P
Sbjct: 1 MAGPAAAFRRLGALSGAAALGFASYGAHGAQFPDAYGKELFDKANKHHFLHSLALLGVPH 60
Query: 84 TKNPNIVSVVAGISEVLLLFIDSTY 108
+ P ++ ++ LF S Y
Sbjct: 61 CRKPLWAGLL--LASGTTLFCTSFY 83
>sp|Q5F285|TM256_MOUSE Transmembrane protein 256 OS=Mus musculus GN=Tmem256 PE=2 SV=1
Length = 113
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 31 WHKIAAVSGVAALGLGTYGAHGFKPQNPSFKEVWQTASLYHLVHTAALVAAPITKNPNIV 90
+ ++ A+SG ALGL +YGAHG + + KE++ A+ +H +H+ AL+ P + P
Sbjct: 8 FRRLGALSGAGALGLASYGAHGAQFPDAYGKELFDKANKHHFLHSLALLGVPSCRKPVWA 67
Query: 91 SVVAGISEVLLLFIDSTY 108
++ ++ LF S Y
Sbjct: 68 GLL--LASGTTLFCTSFY 83
>sp|Q9P7G8|YLKC_SCHPO UPF0382 membrane protein C1782.12c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC1782.12c PE=3 SV=1
Length = 118
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 35/53 (66%), Gaps = 3/53 (5%)
Query: 30 IWHKIAAVSGVAALGLGTYGAHGFKP--QNPSFKEVWQTASLYHLVHTAALVA 80
IW+ +AA++G+ ++GLG YG+HG + Q+P + W TA Y + H+ A +A
Sbjct: 3 IWN-VAALTGLLSVGLGAYGSHGLQKRVQDPHLLKSWSTACTYLMFHSLATMA 54
>sp|P39619|YWDK_BACSU UPF0382 membrane protein YwdK OS=Bacillus subtilis (strain 168)
GN=ywdK PE=2 SV=2
Length = 123
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 49/91 (53%), Gaps = 9/91 (9%)
Query: 34 IAAVSGVAALGLGTYGAHGFKPQNPS-FKEVWQTASLYHLVHTAAL--VAAPITKNPNIV 90
+ A++ + A+GLG +GAHG + + P + +VW T YH+ H L VA K I
Sbjct: 7 LGAINALLAVGLGAFGAHGLEGKIPDKYLQVWHTGVQYHMYHALGLFVVAFLADKLSGIG 66
Query: 91 SV-VAG--ISEVLLLFIDSTYI---SQNSVL 115
SV AG + ++LF S YI +Q S+L
Sbjct: 67 SVTTAGWLMFAGIVLFSGSLYILSVTQISIL 97
>sp|Q49VD3|Y2132_STAS1 UPF0382 membrane protein SSP2132 OS=Staphylococcus saprophyticus
subsp. saprophyticus (strain ATCC 15305 / DSM 20229)
GN=SSP2132 PE=3 SV=2
Length = 120
Score = 35.8 bits (81), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 34 IAAVSGVAALGLGTYGAHGFKPQ-NPSFKEVWQTASLYHLVHTAALVAAPITKNPNIVSV 92
+ A++ + A+G G +GAHG + + + + VW+ A+ Y + H L+A I ++V
Sbjct: 7 LGALNAMMAVGTGAFGAHGLENKLSAKYLSVWEKATTYQMYHGLGLLAIGIISGTTSINV 66
>sp|Q2YS64|Y533_STAAB UPF0382 membrane protein SAB0533 OS=Staphylococcus aureus (strain
bovine RF122 / ET3-1) GN=SAB0533 PE=3 SV=1
Length = 122
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 34 IAAVSGVAALGLGTYGAHGFKPQ-NPSFKEVWQTASLYHLVHTAALVAAPITKNPNIVSV 92
+ A++ + A+G G +GAHG + + + + VW+ A+ Y + H AL+ + ++V
Sbjct: 7 LGALNAMMAVGTGAFGAHGLQGKISDHYLSVWEKATTYQMYHGLALLIIGVISGTTSINV 66
>sp|Q5HI93|Y629_STAAC UPF0382 membrane protein SACOL0629 OS=Staphylococcus aureus
(strain COL) GN=SACOL0629 PE=3 SV=1
Length = 122
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 34 IAAVSGVAALGLGTYGAHGFKPQ-NPSFKEVWQTASLYHLVHTAALVAAPITKNPNIVSV 92
+ A++ + A+G G +GAHG + + + + VW+ A+ Y + H AL+ + ++V
Sbjct: 7 LGALNAMMAVGTGAFGAHGLQGKISDHYLSVWEKATTYQMYHGLALLIIGVISGTTSINV 66
>sp|Q6GJ86|Y588_STAAR UPF0382 membrane protein SAR0588 OS=Staphylococcus aureus (strain
MRSA252) GN=SAR0588 PE=3 SV=1
Length = 122
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 34 IAAVSGVAALGLGTYGAHGFKPQ-NPSFKEVWQTASLYHLVHTAALVAAPITKNPNIVSV 92
+ A++ + A+G G +GAHG + + + + VW+ A+ Y + H AL+ + ++V
Sbjct: 7 LGALNAMMAVGTGAFGAHGLQGKISDHYLSVWEKATTYQMYHGLALLIIGVISGTTSINV 66
>sp|Q99W28|Y583_STAAM UPF0382 membrane protein SAV0583 OS=Staphylococcus aureus (strain
Mu50 / ATCC 700699) GN=SAV0583 PE=3 SV=1
Length = 122
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 34 IAAVSGVAALGLGTYGAHGFKPQ-NPSFKEVWQTASLYHLVHTAALVAAPITKNPNIVSV 92
+ A++ + A+G G +GAHG + + + + VW+ A+ Y + H AL+ + ++V
Sbjct: 7 LGALNAMMAVGTGAFGAHGLQGKISDHYLSVWEKATTYQMYHGLALLIIGVISGTTSINV 66
>sp|Q2G0J5|Y567_STAA8 UPF0382 membrane protein SAOUHSC_00567 OS=Staphylococcus aureus
(strain NCTC 8325) GN=SAOUHSC_00567 PE=3 SV=1
Length = 122
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 34 IAAVSGVAALGLGTYGAHGFKPQ-NPSFKEVWQTASLYHLVHTAALVAAPITKNPNIVSV 92
+ A++ + A+G G +GAHG + + + + VW+ A+ Y + H AL+ + ++V
Sbjct: 7 LGALNAMMAVGTGAFGAHGLQGKISDHYLSVWEKATTYQMYHGLALLIIGVISGTTSINV 66
>sp|Q2FJ60|Y565_STAA3 UPF0382 membrane protein SAUSA300_0565 OS=Staphylococcus aureus
(strain USA300) GN=SAUSA300_0565 PE=3 SV=1
Length = 122
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 34 IAAVSGVAALGLGTYGAHGFKPQ-NPSFKEVWQTASLYHLVHTAALVAAPITKNPNIVSV 92
+ A++ + A+G G +GAHG + + + + VW+ A+ Y + H AL+ + ++V
Sbjct: 7 LGALNAMMAVGTGAFGAHGLQGKISDHYLSVWEKATTYQMYHGLALLIIGVISGTTSINV 66
>sp|Q6GBQ4|Y541_STAAS UPF0382 membrane protein SAS0541 OS=Staphylococcus aureus (strain
MSSA476) GN=SAS0541 PE=3 SV=1
Length = 122
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 34 IAAVSGVAALGLGTYGAHGFKPQ-NPSFKEVWQTASLYHLVHTAALVAAPITKNPNIVSV 92
+ A++ + A+G G +GAHG + + + + VW+ A+ Y + H AL+ + ++V
Sbjct: 7 LGALNAMMAVGTGAFGAHGLQGKISDHYLSVWEKATTYQMYHGLALLIIGVISGTTSINV 66
>sp|Q7A763|Y540_STAAN UPF0382 membrane protein SA0540 OS=Staphylococcus aureus (strain
N315) GN=SA0540 PE=3 SV=1
Length = 122
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 34 IAAVSGVAALGLGTYGAHGFKPQ-NPSFKEVWQTASLYHLVHTAALVAAPITKNPNIVSV 92
+ A++ + A+G G +GAHG + + + + VW+ A+ Y + H AL+ + ++V
Sbjct: 7 LGALNAMMAVGTGAFGAHGLQGKISDHYLSVWEKATTYQMYHGLALLIIGVISGTTSINV 66
>sp|Q7A1P4|Y538_STAAW UPF0382 membrane protein MW0538 OS=Staphylococcus aureus (strain
MW2) GN=MW0538 PE=3 SV=1
Length = 122
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 34 IAAVSGVAALGLGTYGAHGFKPQ-NPSFKEVWQTASLYHLVHTAALVAAPITKNPNIVSV 92
+ A++ + A+G G +GAHG + + + + VW+ A+ Y + H AL+ + ++V
Sbjct: 7 LGALNAMMAVGTGAFGAHGLQGKISDHYLSVWEKATTYQMYHGLALLIIGVISGTTSINV 66
>sp|Q8CTQ5|Y353_STAES UPF0382 membrane protein SE_0353 OS=Staphylococcus epidermidis
(strain ATCC 12228) GN=SE_0353 PE=3 SV=1
Length = 122
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 34 IAAVSGVAALGLGTYGAHGFKPQ-NPSFKEVWQTASLYHLVHTAALVAAPITKNPNIVSV 92
+ A++ + A+G G +GAHG + + + + +W+ A+ Y + H L+ + ++V
Sbjct: 7 LGALNAMMAVGTGAFGAHGLEDKLSDKYMSIWEKATTYQMYHGLGLLVIGLISGTTSINV 66
>sp|Q5HRG3|Y230_STAEQ UPF0382 membrane protein SERP0230 OS=Staphylococcus epidermidis
(strain ATCC 35984 / RP62A) GN=SERP0230 PE=3 SV=2
Length = 122
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 34 IAAVSGVAALGLGTYGAHGFKPQ-NPSFKEVWQTASLYHLVHTAALVAAPITKNPNIVSV 92
+ A++ + A+G G +GAHG + + + + +W+ A+ Y + H L+ + ++V
Sbjct: 7 LGALNAMMAVGTGAFGAHGLEGKLSDKYMSIWEKATTYQMYHGLGLLVIGLISGTTSINV 66
>sp|Q4L3Q9|Y2409_STAHJ UPF0382 membrane protein SH2409 OS=Staphylococcus haemolyticus
(strain JCSC1435) GN=SH2409 PE=3 SV=2
Length = 122
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 41/86 (47%), Gaps = 16/86 (18%)
Query: 34 IAAVSGVAALGLGTYGAHGFKPQ-NPSFKEVWQTASLYHLVHTAALVAAPITKNPNIVSV 92
+ A+ + ++G G +GAHG + + + + VW+ A Y + H L+ I+ V
Sbjct: 7 LGALCTMMSVGTGAFGAHGLEGKLSDKYMSVWEKAVNYQMYHGLGLI---------IIGV 57
Query: 93 VAGISEV------LLLFIDSTYISQN 112
++G + + LLF+ + S +
Sbjct: 58 ISGTTSINVNWAGWLLFLGVVFFSGS 83
>sp|P53327|SLH1_YEAST Antiviral helicase SLH1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SLH1 PE=1 SV=2
Length = 1967
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 93 VAGISEVLLLFIDSTYISQNSVLCWLIHSDEIIS 126
AG+SE L IDST + C L+H D+I++
Sbjct: 1593 TAGVSEHLSSLIDSTLENLRESQCVLLHGDDIVA 1626
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.135 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,749,643
Number of Sequences: 539616
Number of extensions: 1741732
Number of successful extensions: 4934
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 4921
Number of HSP's gapped (non-prelim): 29
length of query: 135
length of database: 191,569,459
effective HSP length: 100
effective length of query: 35
effective length of database: 137,607,859
effective search space: 4816275065
effective search space used: 4816275065
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)