Query 032699
Match_columns 135
No_of_seqs 113 out of 707
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 07:20:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032699.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032699hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ohu_A Apoptosis regulator CED 16.9 91 0.0031 23.3 2.8 34 101-134 108-141 (175)
2 2a5y_A Apoptosis regulator CED 16.8 89 0.003 24.0 2.8 34 101-134 128-161 (204)
3 2y6w_A BCL-2-like protein 2; a 14.7 1.6E+02 0.0053 21.8 3.6 33 101-134 113-145 (177)
4 2w3l_A BCL2-XL, apoptosis regu 14.1 1.1E+02 0.0038 21.6 2.6 33 101-134 89-121 (144)
5 1q90_R Cytochrome B6-F complex 12.9 2E+02 0.0068 17.4 3.1 16 33-48 19-34 (49)
6 1v54_K IHQ, cytochrome C oxida 11.7 92 0.0031 19.7 1.3 25 101-125 22-46 (56)
7 1r2d_A Apoptosis regulator BCL 11.7 1.4E+02 0.0048 23.3 2.6 34 100-134 143-176 (218)
8 1o0l_A Apoptosis regulator BCL 10.5 2E+02 0.0068 21.3 3.1 33 101-134 105-137 (188)
9 4aq3_A Apoptosis regulator BCL 10.5 1.6E+02 0.0056 21.7 2.6 34 100-134 112-145 (169)
10 2xa0_A BCL-2, apoptosis regula 10.2 1.6E+02 0.0056 22.6 2.5 34 100-134 150-183 (207)
No 1
>1ohu_A Apoptosis regulator CED-9; BCL-2 family; 2.03A {Caenorhabditis elegans} SCOP: f.1.4.1 PDB: 1ty4_A
Probab=16.91 E-value=91 Score=23.27 Aligned_cols=34 Identities=3% Similarity=-0.026 Sum_probs=25.3
Q ss_pred hhhhhhHHHHHhhCcccchhhhHHHHHHhhhhcc
Q 032699 101 LLFIDSTYISQNSVLCWLIHSDEIISFMCEYVLD 134 (135)
Q Consensus 101 vLFSGSLY~~altg~~~l~~~~~~~~~~~~~~~~ 134 (135)
..|+|.|-.........-.....|.++|++|+-+
T Consensus 108 faF~g~La~~~v~~~~~~~~v~~I~~~~~~yl~~ 141 (175)
T 1ohu_A 108 ISFGGFVAAKMMESVELQGQVRNLFVYTSLFIKT 141 (175)
T ss_dssp HHHHHHHHHHHTTCTTTGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh
Confidence 7899999888766334445667799999999754
No 2
>2a5y_A Apoptosis regulator CED-9; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: f.1.4.1
Probab=16.84 E-value=89 Score=24.05 Aligned_cols=34 Identities=3% Similarity=-0.026 Sum_probs=25.4
Q ss_pred hhhhhhHHHHHhhCcccchhhhHHHHHHhhhhcc
Q 032699 101 LLFIDSTYISQNSVLCWLIHSDEIISFMCEYVLD 134 (135)
Q Consensus 101 vLFSGSLY~~altg~~~l~~~~~~~~~~~~~~~~ 134 (135)
+.|+|.|-.........-.....|.++|++|+-+
T Consensus 128 faF~g~La~~~v~~~~~~~~V~~I~~w~~~yl~~ 161 (204)
T 2a5y_A 128 ISFGGFVAAKMMESVELQGQVRNLFVYTSLFIKT 161 (204)
T ss_dssp HHHHHHHHHHHHTSTTSSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHh
Confidence 7899999888776334445567799999999754
No 3
>2y6w_A BCL-2-like protein 2; apoptosis; HET: PGE; 2.00A {Homo sapiens} PDB: 1mk3_A 1zy3_A
Probab=14.66 E-value=1.6e+02 Score=21.79 Aligned_cols=33 Identities=12% Similarity=0.116 Sum_probs=24.9
Q ss_pred hhhhhhHHHHHhhCcccchhhhHHHHHHhhhhcc
Q 032699 101 LLFIDSTYISQNSVLCWLIHSDEIISFMCEYVLD 134 (135)
Q Consensus 101 vLFSGSLY~~altg~~~l~~~~~~~~~~~~~~~~ 134 (135)
..|+|.|-..+.... .-.....|..+|++|+.+
T Consensus 113 faF~g~La~~~~~~~-~~~~v~~I~~~~~~yl~~ 145 (177)
T 2y6w_A 113 FVFGAALCAESVNKE-MEPLVGQVQEWMVEYLET 145 (177)
T ss_dssp HHHHHHHHHHHHHTT-CTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHHh
Confidence 788998888877653 334567889999999864
No 4
>2w3l_A BCL2-XL, apoptosis regulator BCL-2; HET: DRO; 2.10A {Homo sapiens} PDB: 2o2f_A*
Probab=14.11 E-value=1.1e+02 Score=21.56 Aligned_cols=33 Identities=18% Similarity=0.128 Sum_probs=24.0
Q ss_pred hhhhhhHHHHHhhCcccchhhhHHHHHHhhhhcc
Q 032699 101 LLFIDSTYISQNSVLCWLIHSDEIISFMCEYVLD 134 (135)
Q Consensus 101 vLFSGSLY~~altg~~~l~~~~~~~~~~~~~~~~ 134 (135)
..|+|.|-..+.... .-.....|.+++++|+.+
T Consensus 89 f~F~g~la~~~~~~~-~~~~v~~i~~~~~~yl~~ 121 (144)
T 2w3l_A 89 FEFGGVMCVESVNRE-MSPLVDNIALWMTEYLNR 121 (144)
T ss_dssp HHHHHHHHHHHHHTT-CTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcc-ChHHHHHHHHHHHHHHHh
Confidence 678888877766543 345567899999999754
No 5
>1q90_R Cytochrome B6-F complex iron-sulfur subunit; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.12.1
Probab=12.94 E-value=2e+02 Score=17.37 Aligned_cols=16 Identities=6% Similarity=-0.255 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHh
Q 032699 33 KIAAVSGVAALGLGTY 48 (135)
Q Consensus 33 ~lgal~Ga~aValGAf 48 (135)
.++......+.++.-+
T Consensus 19 ~~G~~a~~a~~~~~P~ 34 (49)
T 1q90_R 19 LAGGAGLPITTLALGY 34 (49)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3343333333333333
No 6
>1v54_K IHQ, cytochrome C oxidase polypeptide VIIB; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.5.1 PDB: 1oco_K* 1occ_K* 1ocz_K* 1ocr_K* 1v55_K* 2dyr_K* 2dys_K* 2eij_K* 2eik_K* 2eil_K* 2eim_K* 2ein_K* 2occ_K* 2ybb_V* 2zxw_K* 3abk_K* 3abl_K* 3abm_K* 3ag1_K* 3ag2_K* ...
Probab=11.70 E-value=92 Score=19.69 Aligned_cols=25 Identities=4% Similarity=0.005 Sum_probs=18.8
Q ss_pred hhhhhhHHHHHhhCcccchhhhHHH
Q 032699 101 LLFIDSTYISQNSVLCWLIHSDEII 125 (135)
Q Consensus 101 vLFSGSLY~~altg~~~l~~~~~~~ 125 (135)
..||-+.|.+.+|+..+=-++.+++
T Consensus 22 a~FC~a~W~y~~TQ~GIeWnlSPVG 46 (56)
T 1v54_K 22 ATFCVAVWVYMATQIGIEWNPSPVG 46 (56)
T ss_dssp HHHHHHHHHHHHHHSCCCCCCCCTT
T ss_pred hhhhHhhHhhhheeeceeeccCccc
Confidence 4899999999999876554554444
No 7
>1r2d_A Apoptosis regulator BCL-X; monomeric, alpha-helical; 1.95A {Homo sapiens} SCOP: f.1.4.1 PDB: 2b48_A 1r2i_A 1r2h_A 1r2g_A 1r2e_A 1bxl_A 1lxl_A 1maz_A 3cva_X 1ysg_A* 1ysi_A* 1ysn_A* 2o1y_A* 2yxj_A* 3pl7_A 3qkd_A* 1g5j_A 2lp8_A* 2lpc_A
Probab=11.69 E-value=1.4e+02 Score=23.27 Aligned_cols=34 Identities=15% Similarity=0.232 Sum_probs=24.5
Q ss_pred hhhhhhhHHHHHhhCcccchhhhHHHHHHhhhhcc
Q 032699 100 LLLFIDSTYISQNSVLCWLIHSDEIISFMCEYVLD 134 (135)
Q Consensus 100 ivLFSGSLY~~altg~~~l~~~~~~~~~~~~~~~~ 134 (135)
++.|+|.|-..+.... .-.....|..+|++|+.+
T Consensus 143 LfaF~g~La~~~v~~~-~~~~v~~Iv~w~~~yL~e 176 (218)
T 1r2d_A 143 FFSFGGALCVESVDKE-MQVLVSRIAAWMATYLND 176 (218)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHh
Confidence 3788888877776543 335567889999999854
No 8
>1o0l_A Apoptosis regulator BCL-W; helical bundle, binding groove, BH3; NMR {Homo sapiens} SCOP: f.1.4.1
Probab=10.52 E-value=2e+02 Score=21.31 Aligned_cols=33 Identities=12% Similarity=0.116 Sum_probs=24.6
Q ss_pred hhhhhhHHHHHhhCcccchhhhHHHHHHhhhhcc
Q 032699 101 LLFIDSTYISQNSVLCWLIHSDEIISFMCEYVLD 134 (135)
Q Consensus 101 vLFSGSLY~~altg~~~l~~~~~~~~~~~~~~~~ 134 (135)
..|+|.|-..+.... .-.....|.+++++|+.+
T Consensus 105 faF~g~La~~~~~~~-~~~~v~~i~~~~~~yl~~ 137 (188)
T 1o0l_A 105 FVFGAALCAESVNKE-MEPLVGQVQEWMVEYLET 137 (188)
T ss_dssp HHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHh
Confidence 688998888877653 334567889999999754
No 9
>4aq3_A Apoptosis regulator BCL-2, BCL-2-like protein 1; chimera; HET: 398; 2.40A {Homo sapiens} PDB: 1g5m_A 1gjh_A 1ysw_A* 2o21_A* 2o22_A*
Probab=10.52 E-value=1.6e+02 Score=21.65 Aligned_cols=34 Identities=18% Similarity=0.144 Sum_probs=24.6
Q ss_pred hhhhhhhHHHHHhhCcccchhhhHHHHHHhhhhcc
Q 032699 100 LLLFIDSTYISQNSVLCWLIHSDEIISFMCEYVLD 134 (135)
Q Consensus 100 ivLFSGSLY~~altg~~~l~~~~~~~~~~~~~~~~ 134 (135)
++.|+|.|-..+.... .-.....|..++++|+.+
T Consensus 112 LfaF~g~La~~~~~~~-~~~~v~~I~~~~~~~l~~ 145 (169)
T 4aq3_A 112 FFEFGGVMCVESVNRE-MSPLVDNIALWMTEYLNR 145 (169)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHHh
Confidence 3678888888777553 445567888999998753
No 10
>2xa0_A BCL-2, apoptosis regulator BCL-2; cell death; 2.70A {Homo sapiens} PDB: 1gjh_A 1ysw_A* 2o21_A* 2o22_A* 1g5m_A
Probab=10.25 E-value=1.6e+02 Score=22.61 Aligned_cols=34 Identities=18% Similarity=0.144 Sum_probs=24.4
Q ss_pred hhhhhhhHHHHHhhCcccchhhhHHHHHHhhhhcc
Q 032699 100 LLLFIDSTYISQNSVLCWLIHSDEIISFMCEYVLD 134 (135)
Q Consensus 100 ivLFSGSLY~~altg~~~l~~~~~~~~~~~~~~~~ 134 (135)
+..|+|.|-..+.... .-.....|..+|++|+.+
T Consensus 150 LfaF~g~Lav~~v~~~-~~~~v~~Iv~w~~~yL~e 183 (207)
T 2xa0_A 150 FFEFGGVMCVESVNRE-MSPLVDNIALWMTEYLNR 183 (207)
T ss_dssp HHHHHHHHHHHHHHTT-CTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcc-ChHHHHHHHHHHHHHHHh
Confidence 3788888877775543 345667899999999754
Done!