Query 032699
Match_columns 135
No_of_seqs 113 out of 707
Neff 4.8
Searched_HMMs 13730
Date Mon Mar 25 07:20:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032699.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032699hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74d2 f.23.12.1 (D:12-45) IS 36.6 18 0.0013 19.3 3.0 21 28-48 4-24 (34)
2 d2gc6a1 c.59.1.2 (A:297-425) F 13.2 17 0.0012 22.7 -0.3 11 101-111 111-121 (129)
3 d1ohua_ f.1.4.1 (A:) Apoptosis 12.5 66 0.0048 22.1 2.8 35 100-134 104-138 (172)
4 d1q90r_ f.23.12.1 (R:) ISP sub 11.8 1.2E+02 0.0084 16.5 3.1 24 22-48 9-32 (39)
5 d2axte1 f.23.38.1 (E:3-84) Cyt 10.7 1.6E+02 0.012 18.2 3.9 42 63-118 10-51 (82)
6 d1o5za1 c.59.1.2 (A:294-430) F 10.6 22 0.0016 22.5 -0.4 11 101-111 110-120 (137)
7 d1fftc_ f.25.1.1 (C:) Cytochro 8.8 2.6E+02 0.019 18.3 5.5 49 29-77 81-134 (185)
8 d1v54k_ f.23.5.1 (K:) Mitochon 8.8 64 0.0047 18.4 1.3 25 101-125 17-41 (49)
9 d1vlaa_ d.227.1.2 (A:) Hypothe 7.2 2.1E+02 0.015 17.6 3.7 23 29-51 44-66 (144)
10 d1g5ma_ f.1.4.1 (A:) Bcl-2 {Hu 7.0 1.6E+02 0.012 19.7 3.1 33 101-134 108-140 (164)
No 1
>d2e74d2 f.23.12.1 (D:12-45) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=36.55 E-value=18 Score=19.30 Aligned_cols=21 Identities=19% Similarity=0.314 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHh
Q 032699 28 PVIWHKIAAVSGVAALGLGTY 48 (135)
Q Consensus 28 ~r~~l~lgal~Ga~aValGAf 48 (135)
.|.|+-+-.+..+.+|++||.
T Consensus 4 rrqfmnlltfgt~tg~alg~l 24 (34)
T d2e74d2 4 RRQFMNLLAFGTVTGVALGAL 24 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHhhh
Confidence 344544445556778888875
No 2
>d2gc6a1 c.59.1.2 (A:297-425) Folylpolyglutamate synthetase, C-terminal domain {Lactobacillus casei [TaxId: 1582]}
Probab=13.18 E-value=17 Score=22.66 Aligned_cols=11 Identities=18% Similarity=0.543 Sum_probs=9.0
Q ss_pred hhhhhhHHHHH
Q 032699 101 LLFIDSTYISQ 111 (135)
Q Consensus 101 vLFSGSLY~~a 111 (135)
++.+||+|+.+
T Consensus 111 vli~GS~ylvg 121 (129)
T d2gc6a1 111 IVITGSLYLAS 121 (129)
T ss_dssp EEEESCHHHHH
T ss_pred EEEEehHHHHH
Confidence 78999999753
No 3
>d1ohua_ f.1.4.1 (A:) Apoptosis regulator ced-9 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Probab=12.54 E-value=66 Score=22.10 Aligned_cols=35 Identities=6% Similarity=0.013 Sum_probs=24.7
Q ss_pred hhhhhhhHHHHHhhCcccchhhhHHHHHHhhhhcc
Q 032699 100 LLLFIDSTYISQNSVLCWLIHSDEIISFMCEYVLD 134 (135)
Q Consensus 100 ivLFSGSLY~~altg~~~l~~~~~~~~~~~~~~~~ 134 (135)
++.|+|.|-.......+.-.....|+.++-+|+.+
T Consensus 104 l~aF~g~la~~~~~~~~~~~~v~~i~~~~~~fl~~ 138 (172)
T d1ohua_ 104 LISFGGFVAAKMMESVELQGQVRNLFVYTSLFIKT 138 (172)
T ss_dssp HHHHHHHHHHHHTTCTTTGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHH
Confidence 47899998877775544444566788888888743
No 4
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=11.82 E-value=1.2e+02 Score=16.47 Aligned_cols=24 Identities=8% Similarity=-0.119 Sum_probs=12.6
Q ss_pred hhcccchHHHHHHHHHHHHHHHHHHHh
Q 032699 22 RIIMMDPVIWHKIAAVSGVAALGLGTY 48 (135)
Q Consensus 22 ~~~~m~~r~~l~lgal~Ga~aValGAf 48 (135)
+|+.|+ .+.+|++++-.+=+++-|
T Consensus 9 rR~~MN---Lll~G~~~~~~~g~l~py 32 (39)
T d1q90r_ 9 KRNIMN---LILAGGAGLPITTLALGY 32 (39)
T ss_dssp HHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH---HHHHhccchhhhhhccce
Confidence 445554 455666666554444443
No 5
>d2axte1 f.23.38.1 (E:3-84) Cytochrome b559 subunit alpha, PsbE {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=10.65 E-value=1.6e+02 Score=18.24 Aligned_cols=42 Identities=17% Similarity=0.042 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCchhhHHHHHhhhhhhhhhhhHHHHHhhCcccc
Q 032699 63 VWQTASLYHLVHTAALVAAPITKNPNIVSVVAGISEVLLLFIDSTYISQNSVLCWL 118 (135)
Q Consensus 63 ~~~TA~~Yq~~HalALl~l~~~~~~~~~~~l~G~~~givLFSGSLY~~altg~~~l 118 (135)
-.-|-.+|-.+|++.+=.+. ++|+ +.=|-.|-+-+|.-++.-
T Consensus 10 dIitsiRYWvIHsiTIPslF----------iaGw----lFVstGLAYdvFGtPrPn 51 (82)
T d2axte1 10 DIITSVRYWVIHSITIPALF----------IAGW----LFVSTGLAYDVFGTPRPD 51 (82)
T ss_dssp HHHHCHHHHHHHHHHHHHHH----------HHHH----HHHHTTHHHHHTTCCCTT
T ss_pred hhhheeeEEEEEeecccHHH----------Hhhh----hheecccchhhcCCCCcc
Confidence 34477899999998762221 2677 444555666777666543
No 6
>d1o5za1 c.59.1.2 (A:294-430) Folylpolyglutamate synthetase, C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=10.60 E-value=22 Score=22.52 Aligned_cols=11 Identities=9% Similarity=0.211 Sum_probs=8.7
Q ss_pred hhhhhhHHHHH
Q 032699 101 LLFIDSTYISQ 111 (135)
Q Consensus 101 vLFSGSLY~~a 111 (135)
++.|||+|+.+
T Consensus 110 ilv~GSlylvg 120 (137)
T d1o5za1 110 TVVTGSLFLVG 120 (137)
T ss_dssp EEEESCHHHHH
T ss_pred EEEECCHHHHH
Confidence 67889999754
No 7
>d1fftc_ f.25.1.1 (C:) Cytochrome O ubiquinol oxidase, subunit III {Escherichia coli [TaxId: 562]}
Probab=8.84 E-value=2.6e+02 Score=18.32 Aligned_cols=49 Identities=18% Similarity=0.424 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhh-----ccCCCCCChhHHHHHHHHHHHHHHHHHH
Q 032699 29 VIWHKIAAVSGVAALGLGTYG-----AHGFKPQNPSFKEVWQTASLYHLVHTAA 77 (135)
Q Consensus 29 r~~l~lgal~Ga~aValGAfG-----AHgL~~~~~~~~~~~~TA~~Yq~~HalA 77 (135)
+.++.++.+.|..-+.+-++. .+|....+..--..+=+-+--|..|.++
T Consensus 81 ~~~L~~t~~lG~~Fl~~q~~e~~~l~~~g~~~~~~~~~s~fy~lTGlH~lHV~~ 134 (185)
T d1fftc_ 81 ISWLALTWLFGAGFIGMEIYEFHHLIVNGMGPDRSGFLSAFFALVGTHGLHVTS 134 (185)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHSSCSCCCCSTTTHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHcccccccccchhhHHHHHHHHHHHHHH
Confidence 567788888888877776665 4455442222234555556678888665
No 8
>d1v54k_ f.23.5.1 (K:) Mitochondrial cytochrome c oxidase subunit VIIb {Cow (Bos taurus) [TaxId: 9913]}
Probab=8.84 E-value=64 Score=18.41 Aligned_cols=25 Identities=4% Similarity=0.005 Sum_probs=18.5
Q ss_pred hhhhhhHHHHHhhCcccchhhhHHH
Q 032699 101 LLFIDSTYISQNSVLCWLIHSDEII 125 (135)
Q Consensus 101 vLFSGSLY~~altg~~~l~~~~~~~ 125 (135)
..||-+.|.+++|+...=-++.+++
T Consensus 17 a~fc~avW~yv~TQ~gI~WnlSPVG 41 (49)
T d1v54k_ 17 ATFCVAVWVYMATQIGIEWNPSPVG 41 (49)
T ss_dssp HHHHHHHHHHHHHHSCCCCCCCCTT
T ss_pred cchhhhhhhheeeeeeeeecccccc
Confidence 4899999999999876554544444
No 9
>d1vlaa_ d.227.1.2 (A:) Hypothetical protein TM0919 {Thermotoga maritima [TaxId: 2336]}
Probab=7.24 E-value=2.1e+02 Score=17.61 Aligned_cols=23 Identities=4% Similarity=0.045 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Q 032699 29 VIWHKIAAVSGVAALGLGTYGAH 51 (135)
Q Consensus 29 r~~l~lgal~Ga~aValGAfGAH 51 (135)
..=+.++|+.+++++.+.++...
T Consensus 44 P~elllaala~C~~~~~~~~a~~ 66 (144)
T d1vlaa_ 44 PLELVLTGLMGCTGMDVVSILRK 66 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 34578899999999998888764
No 10
>d1g5ma_ f.1.4.1 (A:) Bcl-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.99 E-value=1.6e+02 Score=19.71 Aligned_cols=33 Identities=18% Similarity=0.128 Sum_probs=23.1
Q ss_pred hhhhhhHHHHHhhCcccchhhhHHHHHHhhhhcc
Q 032699 101 LLFIDSTYISQNSVLCWLIHSDEIISFMCEYVLD 134 (135)
Q Consensus 101 vLFSGSLY~~altg~~~l~~~~~~~~~~~~~~~~ 134 (135)
+.|+|.|-....... .-.....|+.++.+|+.+
T Consensus 108 ~~F~~~la~~~~~~~-~~~~v~~i~~~~~~~l~~ 140 (164)
T d1g5ma_ 108 FEFGGVMCVESVNRE-MSPLVDNIALWMTEYLNR 140 (164)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-CchHHHHHHHHHHHHHHH
Confidence 788888877665543 334557788888888754
Done!