Query 032701
Match_columns 135
No_of_seqs 115 out of 495
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 07:23:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032701.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032701hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1f66_C Histone H2A.Z; nucleoso 100.0 4.1E-48 1.4E-52 285.4 9.0 124 9-134 1-124 (128)
2 2f8n_G Core histone macro-H2A. 100.0 2.6E-47 9E-52 278.3 10.3 110 24-134 9-119 (120)
3 1id3_C Histone H2A.1; nucleoso 100.0 2.8E-46 9.7E-51 276.5 12.0 111 23-134 11-122 (131)
4 2nqb_C Histone H2A; nucleosome 100.0 2.8E-46 9.7E-51 273.9 10.1 111 23-134 9-120 (123)
5 1tzy_A Histone H2A-IV; histone 100.0 5.9E-46 2E-50 274.2 10.1 111 23-134 11-122 (129)
6 2f8n_K Histone H2A type 1; nuc 100.0 3.7E-45 1.3E-49 275.5 9.5 113 21-134 28-141 (149)
7 2jss_A Chimera of histone H2B. 100.0 1.8E-37 6.3E-42 241.3 9.8 99 26-124 94-192 (192)
8 3ksy_A SOS-1, SON of sevenless 99.9 1.2E-26 4.1E-31 214.6 8.1 100 27-128 94-193 (1049)
9 1jfi_A Transcription regulator 99.9 1.1E-23 3.9E-28 148.2 6.7 82 30-112 4-85 (98)
10 1n1j_B NF-YC; histone-like PAI 99.8 4E-19 1.4E-23 124.5 8.5 79 33-112 15-93 (97)
11 4g92_C HAPE; transcription fac 99.8 1.3E-18 4.3E-23 126.2 8.4 76 35-111 39-114 (119)
12 2byk_A Chrac-16; nucleosome sl 99.7 1.8E-17 6.1E-22 123.4 6.0 85 26-111 8-93 (140)
13 1tzy_D Histone H4-VI; histone- 99.6 6.3E-16 2.1E-20 109.3 8.1 78 23-104 17-94 (103)
14 2yfw_B Histone H4, H4; cell cy 99.6 7.1E-16 2.4E-20 109.1 7.4 79 23-105 17-95 (103)
15 1f1e_A Histone fold protein; a 99.3 9.8E-12 3.4E-16 93.7 7.2 71 32-104 77-147 (154)
16 1b67_A Protein (histone HMFA); 99.0 1.8E-09 6.2E-14 70.2 7.6 64 37-102 2-65 (68)
17 1id3_B Histone H4; nucleosome 98.9 4.8E-09 1.7E-13 73.9 8.1 78 23-104 16-93 (102)
18 1ku5_A HPHA, archaeal histon; 98.9 5.1E-09 1.8E-13 68.6 7.5 65 37-103 6-70 (70)
19 1n1j_A NF-YB; histone-like PAI 98.6 8.9E-08 3.1E-12 65.8 7.3 69 34-102 5-73 (93)
20 2byk_B Chrac-14; nucleosome sl 98.5 1.3E-07 4.6E-12 69.0 5.6 74 35-109 7-81 (128)
21 3b0c_W CENP-W, centromere prot 98.5 5.4E-07 1.8E-11 59.9 7.2 65 37-102 4-68 (76)
22 2hue_C Histone H4; mini beta s 98.2 5.5E-06 1.9E-10 56.0 7.7 65 38-104 11-75 (84)
23 1f1e_A Histone fold protein; a 98.2 4.4E-06 1.5E-10 62.8 7.4 65 37-102 4-68 (154)
24 1taf_B TFIID TBP associated fa 98.0 2.6E-05 8.9E-10 51.5 7.8 66 35-102 4-69 (70)
25 1jfi_B DR1 protein, transcript 97.9 4.4E-05 1.5E-09 58.6 7.5 78 32-111 10-87 (179)
26 3b0c_T CENP-T, centromere prot 97.8 3E-05 1E-09 55.1 5.6 70 35-106 5-74 (111)
27 1taf_A TFIID TBP associated fa 97.5 0.00055 1.9E-08 44.8 7.3 60 42-103 6-65 (68)
28 4dra_A Centromere protein S; D 97.3 0.00052 1.8E-08 49.1 6.5 79 33-113 26-104 (113)
29 3b0b_B CENP-S, centromere prot 97.3 0.00064 2.2E-08 48.2 6.4 79 33-113 18-96 (107)
30 1tzy_B Histone H2B; histone-fo 97.2 0.0012 4.1E-08 48.1 7.5 65 36-102 36-100 (126)
31 2nqb_D Histone H2B; nucleosome 97.2 0.001 3.5E-08 48.2 7.0 64 37-102 34-97 (123)
32 3v9r_A MHF1, uncharacterized p 97.2 0.00091 3.1E-08 46.0 6.4 79 33-113 11-89 (90)
33 2hue_B Histone H3; mini beta s 97.1 0.0026 9E-08 42.5 7.5 67 36-102 2-71 (77)
34 3vh5_A CENP-S; histone fold, c 97.1 0.0013 4.6E-08 48.6 6.5 79 33-113 18-96 (140)
35 1bh9_B TAFII28; histone fold, 96.9 0.0033 1.1E-07 43.0 7.1 64 37-102 16-80 (89)
36 3nqj_A Histone H3-like centrom 96.9 0.0039 1.4E-07 42.1 7.2 65 37-102 3-73 (82)
37 3r45_A Histone H3-like centrom 96.9 0.0026 8.8E-08 47.8 6.7 71 33-103 73-148 (156)
38 1tzy_C Histone H3; histone-fol 96.8 0.0056 1.9E-07 45.0 7.7 69 34-102 59-130 (136)
39 3nqu_A Histone H3-like centrom 96.7 0.0054 1.9E-07 45.3 7.3 68 34-102 58-131 (140)
40 2yfv_A Histone H3-like centrom 96.7 0.0064 2.2E-07 42.5 7.1 69 34-102 24-98 (100)
41 2jss_A Chimera of histone H2B. 96.5 0.0074 2.5E-07 46.2 7.0 61 41-102 7-67 (192)
42 4dra_E Centromere protein X; D 96.1 0.032 1.1E-06 37.8 7.5 69 33-101 8-77 (84)
43 3b0b_C CENP-X, centromere prot 96.1 0.032 1.1E-06 37.5 7.4 67 35-101 6-73 (81)
44 2ly8_A Budding yeast chaperone 95.8 0.028 9.4E-07 40.5 6.5 48 55-102 63-110 (121)
45 2l5a_A Histone H3-like centrom 95.4 0.018 6.1E-07 45.8 4.9 58 43-102 167-224 (235)
46 1k6k_A ATP-dependent CLP prote 90.7 0.38 1.3E-05 33.4 4.8 40 73-112 6-45 (143)
47 1h3o_B Transcription initiatio 90.3 1.9 6.6E-05 28.3 7.7 66 37-103 5-70 (76)
48 1wwi_A Hypothetical protein TT 86.1 3 0.0001 30.8 7.1 59 37-97 2-60 (148)
49 1khy_A CLPB protein; alpha hel 86.0 1 3.6E-05 31.2 4.5 32 74-105 11-42 (148)
50 2y1q_A CLPC N-domain, negative 85.8 0.67 2.3E-05 32.3 3.5 39 74-112 11-51 (150)
51 3fes_A ATP-dependent CLP endop 84.8 0.98 3.3E-05 31.8 3.9 40 73-112 12-53 (145)
52 3fh2_A Probable ATP-dependent 84.4 0.98 3.4E-05 31.7 3.8 39 74-112 12-52 (146)
53 3zri_A CLPB protein, CLPV; cha 79.4 1.8 6.1E-05 31.9 3.7 49 64-112 17-70 (171)
54 3fes_A ATP-dependent CLP endop 78.9 1.6 5.4E-05 30.6 3.2 40 73-112 86-127 (145)
55 3fh2_A Probable ATP-dependent 78.7 2.1 7E-05 30.0 3.7 40 74-113 87-128 (146)
56 2l5a_A Histone H3-like centrom 74.6 9.6 0.00033 30.1 6.9 47 55-101 35-81 (235)
57 1r4v_A Hypothetical protein AQ 72.4 5.5 0.00019 30.1 4.7 60 37-98 26-85 (171)
58 1khy_A CLPB protein; alpha hel 72.2 5.9 0.0002 27.2 4.7 40 73-112 87-127 (148)
59 1k6k_A ATP-dependent CLP prote 72.0 4.1 0.00014 27.9 3.8 40 73-112 84-125 (143)
60 1r6b_X CLPA protein; AAA+, N-t 69.4 6.7 0.00023 34.3 5.4 40 73-112 6-45 (758)
61 3zri_A CLPB protein, CLPV; cha 69.2 4.7 0.00016 29.6 3.8 32 74-105 104-136 (171)
62 2y1q_A CLPC N-domain, negative 63.9 4.4 0.00015 28.0 2.6 33 73-105 84-116 (150)
63 2vxz_A Pyrsv_GP04; viral prote 55.7 34 0.0012 25.5 6.2 46 67-113 71-116 (165)
64 3pxg_A Negative regulator of g 49.7 12 0.0004 31.2 3.2 39 73-111 10-50 (468)
65 3pxi_A Negative regulator of g 45.8 21 0.00073 31.3 4.4 38 74-111 11-50 (758)
66 3pxg_A Negative regulator of g 42.4 16 0.00053 30.4 2.9 33 74-106 85-117 (468)
67 1qvr_A CLPB protein; coiled co 38.2 26 0.00087 31.4 3.8 34 73-106 10-43 (854)
68 3kw6_A 26S protease regulatory 34.5 59 0.002 19.9 4.1 19 84-102 53-71 (78)
69 2v1u_A Cell division control p 33.7 1.5E+02 0.0052 22.3 7.5 63 40-102 203-274 (387)
70 3pxi_A Negative regulator of g 33.2 26 0.00087 30.8 2.9 33 74-106 85-117 (758)
71 1r6b_X CLPA protein; AAA+, N-t 31.3 36 0.0012 29.6 3.5 34 73-106 84-117 (758)
72 3uk6_A RUVB-like 2; hexameric 30.3 1.8E+02 0.0062 22.1 7.3 64 40-103 261-329 (368)
73 2qby_A CDC6 homolog 1, cell di 28.8 1.9E+02 0.0063 21.8 7.0 64 40-103 199-271 (386)
74 3n22_A Protein S100-A2; EF-han 26.8 1.3E+02 0.0044 19.3 5.1 45 69-113 6-62 (98)
75 2dzn_B 26S protease regulatory 25.9 1.1E+02 0.0036 19.0 4.3 44 56-103 24-67 (82)
76 3nso_A Protein S100-A3; EF-han 24.7 1.3E+02 0.0043 19.7 4.7 45 69-113 5-61 (101)
77 1s1e_A KV channel interacting 24.3 2E+02 0.0067 20.6 6.1 49 75-123 173-222 (224)
78 3ol3_A Putative uncharacterize 23.0 1.9E+02 0.0065 19.9 5.7 71 40-112 13-93 (107)
79 1jba_A GCAP-2, protein (guanyl 22.4 1.5E+02 0.0051 20.4 4.9 41 73-113 146-186 (204)
80 2v6z_M DNA polymerase epsilon 22.2 92 0.0031 21.2 3.6 69 31-102 16-96 (99)
81 1g8p_A Magnesium-chelatase 38 20.8 1E+02 0.0035 23.3 4.0 47 56-102 267-320 (350)
82 2r2i_A Guanylyl cyclase-activa 20.8 1.6E+02 0.0054 20.2 4.8 40 74-113 130-169 (198)
No 1
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=100.00 E-value=4.1e-48 Score=285.40 Aligned_cols=124 Identities=79% Similarity=1.135 Sum_probs=100.6
Q ss_pred cccccccccCCCCCCCCCCCCcccccCcccchhHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 032701 9 LITGKTTINNNKDKDKKKPVSRSSRAGLQFPVGRVHRLLKERAAAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLK 88 (135)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~s~SsRagL~FPVsrv~r~L~~~~~~~~RIs~~ApVyLaAvLEYL~aEILelAg~~A~~~~ 88 (135)
|++||.+ ++.++.+++++|+|+||||||||+||+|||++++|+.+||+++|||||+||||||++||||+|+|+|++++
T Consensus 1 m~~~~~~--~~~~~~~~~~~srS~ragLqfPV~ri~R~Lk~~~~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k 78 (128)
T 1f66_C 1 MAGGKAG--KDSGKAKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLK 78 (128)
T ss_dssp ------------------CCCHHHHHTCSSCHHHHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCC--CCCCCcCCCCcCccccCCccCChHHHHHHHHHcccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3455532 23445567789999999999999999999999998756999999999999999999999999999999999
Q ss_pred CceechhhHHHHhhCChHHHHHhhccccCCcccCCCccccccccCC
Q 032701 89 VKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSK 134 (135)
Q Consensus 89 ~~rItP~hI~~aI~nD~EL~~L~~~~ia~ggv~p~i~~~l~~~~~~ 134 (135)
+++|+|+||++||+||+||++||+.||++|||+|+||++|+||+.+
T Consensus 79 ~krItprhi~lAI~nDeEL~~Ll~~tia~ggv~P~i~~~l~~k~~~ 124 (128)
T 1f66_C 79 VKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQ 124 (128)
T ss_dssp CSEECHHHHHHHHHHSHHHHHHCCSEETTCCCCCCCCGGGC-----
T ss_pred CCeEcHHHHHHHHhccHHHhhhhcceecCCccCCCCCHHhcCcccc
Confidence 9999999999999999999999977999999999999999999875
No 2
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=100.00 E-value=2.6e-47 Score=278.35 Aligned_cols=110 Identities=55% Similarity=0.846 Sum_probs=104.8
Q ss_pred CCCCCCcccccCcccchhHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHHhhC
Q 032701 24 KKKPVSRSSRAGLQFPVGRVHRLLKERAAAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG 103 (135)
Q Consensus 24 ~~~~~s~SsRagL~FPVsrv~r~L~~~~~~~~RIs~~ApVyLaAvLEYL~aEILelAg~~A~~~~~~rItP~hI~~aI~n 103 (135)
+++++|+|+||||||||+||+|||++++|++ ||+++|||||+||||||++||||+|+|+|+++++++|+|+||++||+|
T Consensus 9 ~~~~~srs~ragLqfPV~ri~R~Lk~~~~a~-RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~lAI~n 87 (120)
T 2f8n_G 9 KSTKTSRSAKAGVIFPVGRMLRYIKKGHPKY-RIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVAN 87 (120)
T ss_dssp -CCCCCHHHHHTCSSCHHHHHHHHHHHSSSC-EECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred CcCCcCcccccCccCChHHHHHHHHcCcccc-ccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhc
Confidence 5567899999999999999999999999997 999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHhhc-cccCCcccCCCccccccccCC
Q 032701 104 DEELDTLIKG-TIAGGGVIPHIHKSLINKSSK 134 (135)
Q Consensus 104 D~EL~~L~~~-~ia~ggv~p~i~~~l~~~~~~ 134 (135)
|+|||+||++ ||++|||+|+||++|+||+.+
T Consensus 88 DeEL~~Ll~~vtia~ggv~p~i~~~l~~k~~~ 119 (120)
T 2f8n_G 88 DEELNQLLKGVTIASGGVLPNIHPELLAKKRG 119 (120)
T ss_dssp SHHHHHHTTTEEETTCCCCCCCCGGGSCCC--
T ss_pred CHHHHHHhCCceECCCCcCCCcCHHHcCCccC
Confidence 9999999999 999999999999999999864
No 3
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=100.00 E-value=2.8e-46 Score=276.48 Aligned_cols=111 Identities=59% Similarity=0.928 Sum_probs=104.0
Q ss_pred CCCCCCCcccccCcccchhHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHHhh
Q 032701 23 DKKKPVSRSSRAGLQFPVGRVHRLLKERAAAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 102 (135)
Q Consensus 23 ~~~~~~s~SsRagL~FPVsrv~r~L~~~~~~~~RIs~~ApVyLaAvLEYL~aEILelAg~~A~~~~~~rItP~hI~~aI~ 102 (135)
.+++++|+|+||||||||+||+|||++++|++ ||+++|||||+||||||++||||+|+|+|+++++++|+|+||++||+
T Consensus 11 ~~~~~~srS~ragLqfPV~rI~R~Lk~~~~a~-RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI~ 89 (131)
T 1id3_C 11 AAKASQSRSAKAGLTFPVGRVHRLLRRGNYAQ-RIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIR 89 (131)
T ss_dssp -----CCTTGGGTCSSCHHHHHHHHHTTCSCS-EECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred CCCCCCCccccCCeecCHHHHHHHHHcccccc-ccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHh
Confidence 45678999999999999999999999999997 99999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHhhc-cccCCcccCCCccccccccCC
Q 032701 103 GDEELDTLIKG-TIAGGGVIPHIHKSLINKSSK 134 (135)
Q Consensus 103 nD~EL~~L~~~-~ia~ggv~p~i~~~l~~~~~~ 134 (135)
||+|||+||++ ||++|||+|+||++|+|++.+
T Consensus 90 nDeEL~~Ll~~vtIa~ggvlP~i~~~l~~k~~~ 122 (131)
T 1id3_C 90 NDDELNKLLGNVTIAQGGVLPNIHQNLLPKKSA 122 (131)
T ss_dssp TCHHHHHHTTTEEETTCCCCCCCCGGGSCCSCC
T ss_pred ccHHHHHHhcCceecCCccCCCccHHHcCcccc
Confidence 99999999999 999999999999999999874
No 4
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=100.00 E-value=2.8e-46 Score=273.92 Aligned_cols=111 Identities=64% Similarity=0.949 Sum_probs=103.7
Q ss_pred CCCCCCCcccccCcccchhHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHHhh
Q 032701 23 DKKKPVSRSSRAGLQFPVGRVHRLLKERAAAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 102 (135)
Q Consensus 23 ~~~~~~s~SsRagL~FPVsrv~r~L~~~~~~~~RIs~~ApVyLaAvLEYL~aEILelAg~~A~~~~~~rItP~hI~~aI~ 102 (135)
.+++++|+|+|+||||||+||+|||+++++++ ||+++|||||+||||||++||||+|+|+|+++++++|+|+||++||+
T Consensus 9 ~~~~~~s~s~ragL~fPV~ri~R~Lk~~~~a~-RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~ 87 (123)
T 2nqb_C 9 VKGKAKSRSNRAGLQFPVGRIHRLLRKGNYAE-RVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 87 (123)
T ss_dssp ----CCCHHHHHTCSSCHHHHHHHHHHTTSCS-EECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred CCCCCCCccccCCeeccHHHHHHHHHcccccc-ccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHh
Confidence 45678999999999999999999999999997 99999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHhhc-cccCCcccCCCccccccccCC
Q 032701 103 GDEELDTLIKG-TIAGGGVIPHIHKSLINKSSK 134 (135)
Q Consensus 103 nD~EL~~L~~~-~ia~ggv~p~i~~~l~~~~~~ 134 (135)
||+|||+||++ ||++|||+|+||++|+||+.+
T Consensus 88 nDeEL~~Ll~~vtia~ggvlp~i~~~l~~k~~~ 120 (123)
T 2nqb_C 88 NDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTE 120 (123)
T ss_dssp TSHHHHHHTTTEEETTCCCCCCCCGGGSSCC--
T ss_pred ccHHHHHHhcCceeCCCCcCCCccHHHcCcccc
Confidence 99999999999 999999999999999999875
No 5
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=100.00 E-value=5.9e-46 Score=274.16 Aligned_cols=111 Identities=65% Similarity=0.942 Sum_probs=103.5
Q ss_pred CCCCCCCcccccCcccchhHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHHhh
Q 032701 23 DKKKPVSRSSRAGLQFPVGRVHRLLKERAAAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 102 (135)
Q Consensus 23 ~~~~~~s~SsRagL~FPVsrv~r~L~~~~~~~~RIs~~ApVyLaAvLEYL~aEILelAg~~A~~~~~~rItP~hI~~aI~ 102 (135)
++++++|+|+|+||||||+||+|||++++|++ ||+++|||||+||||||++||||+|+|+|+++++++|+|+||++||+
T Consensus 11 ~~~~~~srS~ragLqfPV~rI~R~Lk~~~~a~-RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~ 89 (129)
T 1tzy_A 11 ARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIR 89 (129)
T ss_dssp ---CCCCHHHHHTCSSCHHHHHHHHHHTTSSS-EECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred CCCCCCCccccCceeccHHHHHHHHHcccccc-ccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHh
Confidence 45678999999999999999999999999997 99999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHhhc-cccCCcccCCCccccccccCC
Q 032701 103 GDEELDTLIKG-TIAGGGVIPHIHKSLINKSSK 134 (135)
Q Consensus 103 nD~EL~~L~~~-~ia~ggv~p~i~~~l~~~~~~ 134 (135)
||+|||+||++ ||++|||+|+||++|+|++.+
T Consensus 90 nDeEL~~L~~~vtIa~ggvlP~i~~~l~~k~~~ 122 (129)
T 1tzy_A 90 NDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTD 122 (129)
T ss_dssp TSHHHHHHTTTEEETTCCCCCCCCGGGSCC---
T ss_pred ccHHHHHHhCCCeecCCCcCCCCCHHHcCcccc
Confidence 99999999999 999999999999999999874
No 6
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=100.00 E-value=3.7e-45 Score=275.47 Aligned_cols=113 Identities=63% Similarity=0.932 Sum_probs=102.9
Q ss_pred CCCCCCCCCcccccCcccchhHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHH
Q 032701 21 DKDKKKPVSRSSRAGLQFPVGRVHRLLKERAAAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLA 100 (135)
Q Consensus 21 ~~~~~~~~s~SsRagL~FPVsrv~r~L~~~~~~~~RIs~~ApVyLaAvLEYL~aEILelAg~~A~~~~~~rItP~hI~~a 100 (135)
++++++.+|+|+||||||||+||+|||++++|++ ||+++|||||+||||||++||||+|+|+|+++++++|+|+||++|
T Consensus 28 ~~~~~k~~srS~ragLqFPVgrI~R~LK~~~~a~-RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrItprhI~lA 106 (149)
T 2f8n_K 28 GKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLA 106 (149)
T ss_dssp ------CCCHHHHHTCSSCHHHHHHHHHHTTSCS-EECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHH
T ss_pred CCCCCCCCCccccCCeeccHHHHHHHHHcccccc-ccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHH
Confidence 3456678999999999999999999999999997 999999999999999999999999999999999999999999999
Q ss_pred hhCChHHHHHhhc-cccCCcccCCCccccccccCC
Q 032701 101 IRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSK 134 (135)
Q Consensus 101 I~nD~EL~~L~~~-~ia~ggv~p~i~~~l~~~~~~ 134 (135)
|+||+|||+||++ ||++|||+|+||++|+||+.+
T Consensus 107 I~nDeEL~~Ll~~vtIa~gGVlP~i~~~l~~k~~~ 141 (149)
T 2f8n_K 107 IRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTE 141 (149)
T ss_dssp HHHSHHHHHHTTTEEETTCCCCCCCCGGGSCC---
T ss_pred HhccHHHHHHhcCceEcCCCCCCCccHHHcCcccc
Confidence 9999999999999 999999999999999999874
No 7
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=100.00 E-value=1.8e-37 Score=241.32 Aligned_cols=99 Identities=73% Similarity=1.106 Sum_probs=95.0
Q ss_pred CCCCcccccCcccchhHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHHhhCCh
Q 032701 26 KPVSRSSRAGLQFPVGRVHRLLKERAAAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDE 105 (135)
Q Consensus 26 ~~~s~SsRagL~FPVsrv~r~L~~~~~~~~RIs~~ApVyLaAvLEYL~aEILelAg~~A~~~~~~rItP~hI~~aI~nD~ 105 (135)
+++|+|+|+||||||+||+|||++++++.+||+++|||||+||||||++||||+|+|+|+++++++|+|+||++||+||+
T Consensus 94 ~~~s~s~ragl~fPv~ri~R~lk~~~~a~~Rv~~~A~vyLaavLEyl~~eIlelA~n~a~~~~~~~I~p~~i~lAi~nD~ 173 (192)
T 2jss_A 94 QAQSSSARAGLQFPVGRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDD 173 (192)
T ss_dssp SSSCHHHHSSCCSCHHHHHHHHHHTTCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHTSH
T ss_pred ccccccccCCCcCCHHHHHHHHHhcCccccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhccH
Confidence 56799999999999999999999998864599999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccccCCcccCCC
Q 032701 106 ELDTLIKGTIAGGGVIPHI 124 (135)
Q Consensus 106 EL~~L~~~~ia~ggv~p~i 124 (135)
||++||+.||++|||+|+|
T Consensus 174 eL~~L~~~ti~~ggv~p~i 192 (192)
T 2jss_A 174 ELDSLIRATIASGGVLPHI 192 (192)
T ss_dssp HHHHHHCSCCTTTCCSSCC
T ss_pred HHHHHHhhhhcCCCcCCCC
Confidence 9999997799999999997
No 8
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=99.93 E-value=1.2e-26 Score=214.64 Aligned_cols=100 Identities=24% Similarity=0.463 Sum_probs=81.5
Q ss_pred CCCcccccCcccchhHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHHhhCChH
Q 032701 27 PVSRSSRAGLQFPVGRVHRLLKERAAAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEE 106 (135)
Q Consensus 27 ~~s~SsRagL~FPVsrv~r~L~~~~~~~~RIs~~ApVyLaAvLEYL~aEILelAg~~A~~~~~~rItP~hI~~aI~nD~E 106 (135)
..|+|+||||||||+||+|+| +++|+. ||+++||||||||||||++||||||||+|+++++.+|+|+||++|++||+|
T Consensus 94 ~~~~~~~~~l~~pv~~~~~~l-~~~~~~-r~~~~~~~y~~avleyl~~~~l~la~~~~~~~~~~~i~p~~~~~ai~~d~e 171 (1049)
T 3ksy_A 94 IEKRKRRNPLSLPVEKIHPLL-KEVLGY-KIDHQVSVYIVAVLEYISADILKLVGNYVRNIRHYEITKQDIKVAMCADKV 171 (1049)
T ss_dssp HTTCCCSSSCSSCHHHHHHHH-HHHHCS-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCHHHHHHHHHHCSS
T ss_pred hhcccccCCccccHHHHHHHh-hccccc-ccCCCCcchhHHHHHHHHHHHHHHHHHHHHHcCCceecCccccccccCCHH
Confidence 368999999999999999999 999996 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccccCCcccCCCcccc
Q 032701 107 LDTLIKGTIAGGGVIPHIHKSL 128 (135)
Q Consensus 107 L~~L~~~~ia~ggv~p~i~~~l 128 (135)
|..||+.....+|++|......
T Consensus 172 L~~l~~~dee~~~~lp~~~~~~ 193 (1049)
T 3ksy_A 172 LMDMFHQDVEDINILSLTDEEP 193 (1049)
T ss_dssp HHHHCC----------------
T ss_pred HHHHHhhccccccCCCCccccC
Confidence 9999987556667888766543
No 9
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=99.89 E-value=1.1e-23 Score=148.19 Aligned_cols=82 Identities=18% Similarity=0.314 Sum_probs=62.1
Q ss_pred cccccCcccchhHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHHhhCChHHHH
Q 032701 30 RSSRAGLQFPVGRVHRLLKERAAAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDT 109 (135)
Q Consensus 30 ~SsRagL~FPVsrv~r~L~~~~~~~~RIs~~ApVyLaAvLEYL~aEILelAg~~A~~~~~~rItP~hI~~aI~nD~EL~~ 109 (135)
++.+++++||++||+|+|+.+.+.. ||++.||||+++++|||+.||+++|++.|.++++++|+|+||..||++|++|++
T Consensus 4 ~~kk~~~~fPvaRIkrimK~~~~~~-~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~~~e~l~F 82 (98)
T 1jfi_A 4 KKKKYNARFPPARIKKIMQTDEEIG-KVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIELEGDPAA 82 (98)
T ss_dssp ------CCCCHHHHHHHHTTSTTCC-CBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC-------
T ss_pred cccccCCCCChHHHHHHHHcCcccc-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHhcCchhhH
Confidence 5678999999999999999999986 999999999999999999999999999999999999999999999999999999
Q ss_pred Hhh
Q 032701 110 LIK 112 (135)
Q Consensus 110 L~~ 112 (135)
|++
T Consensus 83 L~d 85 (98)
T 1jfi_A 83 NKA 85 (98)
T ss_dssp ---
T ss_pred HHh
Confidence 984
No 10
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.78 E-value=4e-19 Score=124.53 Aligned_cols=79 Identities=20% Similarity=0.259 Sum_probs=71.6
Q ss_pred ccCcccchhHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHHhhCChHHHHHhh
Q 032701 33 RAGLQFPVGRVHRLLKERAAAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIK 112 (135)
Q Consensus 33 RagL~FPVsrv~r~L~~~~~~~~RIs~~ApVyLaAvLEYL~aEILelAg~~A~~~~~~rItP~hI~~aI~nD~EL~~L~~ 112 (135)
-.+++||++||+|+|+.+.+.. ||++.||+|+++++|||+.+|++.|++.|..+++++|+++||..||++|++|++|.+
T Consensus 15 ~~~~~lP~arIkrImK~~~~~~-~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~Av~~~e~~~FL~d 93 (97)
T 1n1j_B 15 FRVQELPLARIKKIMKLDEDVK-MISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLID 93 (97)
T ss_dssp -----CCHHHHHHHHTTSTTCC-CBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGGGTT
T ss_pred cCCCcCCHHHHHHHHccCcccc-ccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHhcCcHHHHHHh
Confidence 3478999999999999998876 999999999999999999999999999999999999999999999999999999983
No 11
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=99.76 E-value=1.3e-18 Score=126.23 Aligned_cols=76 Identities=20% Similarity=0.259 Sum_probs=72.2
Q ss_pred CcccchhHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHHhhCChHHHHHh
Q 032701 35 GLQFPVGRVHRLLKERAAAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI 111 (135)
Q Consensus 35 gL~FPVsrv~r~L~~~~~~~~RIs~~ApVyLaAvLEYL~aEILelAg~~A~~~~~~rItP~hI~~aI~nD~EL~~L~ 111 (135)
..+||++||+|+|+.+.+.. +|+..||+|+++++|||+.+|++.|++.|..+++++|+|+||..||++|++|++|.
T Consensus 39 ~~~lPvaRIkrImK~d~~~~-~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di~~Av~~~e~~dFL~ 114 (119)
T 4g92_C 39 IHQLPLARIKKVMKADPEVK-MISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDIAAALSKSDMFDFLI 114 (119)
T ss_dssp CCSSCHHHHHHHHHTSTTCC-EECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGGGT
T ss_pred cCCCCHHHHHHHHhhCCccc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCHHHHHHHHhcCchhhHHH
Confidence 34699999999999998875 99999999999999999999999999999999999999999999999999999875
No 12
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=99.69 E-value=1.8e-17 Score=123.41 Aligned_cols=85 Identities=16% Similarity=0.240 Sum_probs=62.0
Q ss_pred CCCCcccccCcccchhHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHH-HhCCCceechhhHHHHhhCC
Q 032701 26 KPVSRSSRAGLQFPVGRVHRLLKERAAAHGRVGATAAVYTAAILEYLTAEVLELAGNAS-KDLKVKRITPRHLQLAIRGD 104 (135)
Q Consensus 26 ~~~s~SsRagL~FPVsrv~r~L~~~~~~~~RIs~~ApVyLaAvLEYL~aEILelAg~~A-~~~~~~rItP~hI~~aI~nD 104 (135)
++.+++.+..++||++||+|+|+.+.... +|+..||++++.++|||+.+|++.|++.| ...++++|+++||..||.++
T Consensus 8 k~~s~~~~~~~~LPlaRIKrIMK~dpdv~-~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~~~ 86 (140)
T 2byk_A 8 PPVERPPTAETFLPLSRVRTIMKSSMDTG-LITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNKN 86 (140)
T ss_dssp ---------------------CCSSSSCS-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHHTC
T ss_pred CCCCCCcccCCCCCHHHHHHHHhcCcccc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHhcC
Confidence 45788889999999999999999998875 99999999999999999999999999999 99999999999999999999
Q ss_pred hHHHHHh
Q 032701 105 EELDTLI 111 (135)
Q Consensus 105 ~EL~~L~ 111 (135)
++|.+|.
T Consensus 87 e~~dFL~ 93 (140)
T 2byk_A 87 KNLEFLL 93 (140)
T ss_dssp STTGGGT
T ss_pred chhhhHh
Confidence 9999998
No 13
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=99.63 E-value=6.3e-16 Score=109.34 Aligned_cols=78 Identities=18% Similarity=0.253 Sum_probs=70.5
Q ss_pred CCCCCCCcccccCcccchhHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHHhh
Q 032701 23 DKKKPVSRSSRAGLQFPVGRVHRLLKERAAAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 102 (135)
Q Consensus 23 ~~~~~~s~SsRagL~FPVsrv~r~L~~~~~~~~RIs~~ApVyLaAvLEYL~aEILelAg~~A~~~~~~rItP~hI~~aI~ 102 (135)
++++++++++..+ ||+..|+|+++...+ . ||+..+..+|+.+|||++.+|++.|.+.++..+++.|+|+||.+|++
T Consensus 17 kr~~k~~r~~~~g--ip~~~I~Rlar~~G~-~-rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr 92 (103)
T 1tzy_D 17 KRHRKVLRDNIQG--ITKPAIRRLARRGGV-K-RISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALK 92 (103)
T ss_dssp ----CCCCCGGGG--SCHHHHHHHHHHTTC-C-EECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred cccccchhhhccc--CCHHHHHHHHHHcCc-c-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 4677889999999 899999999999987 5 99999999999999999999999999999999999999999999999
Q ss_pred CC
Q 032701 103 GD 104 (135)
Q Consensus 103 nD 104 (135)
+.
T Consensus 93 ~~ 94 (103)
T 1tzy_D 93 RQ 94 (103)
T ss_dssp HT
T ss_pred Hc
Confidence 65
No 14
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=99.62 E-value=7.1e-16 Score=109.14 Aligned_cols=79 Identities=15% Similarity=0.223 Sum_probs=62.6
Q ss_pred CCCCCCCcccccCcccchhHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHHhh
Q 032701 23 DKKKPVSRSSRAGLQFPVGRVHRLLKERAAAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 102 (135)
Q Consensus 23 ~~~~~~s~SsRagL~FPVsrv~r~L~~~~~~~~RIs~~ApVyLaAvLEYL~aEILelAg~~A~~~~~~rItP~hI~~aI~ 102 (135)
++++++++++.++ ||+..|+|+++...+ . ||+..+..+|+.+|||++.+|++.|.+.++..+++.|+|+||.+|++
T Consensus 17 kr~~~~~r~~~~g--ip~~~I~Rlar~~G~-~-rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr 92 (103)
T 2yfw_B 17 KRHRKILRDNIQG--ITKPAIRRLARRGGV-K-RISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALK 92 (103)
T ss_dssp ---------------CCHHHHHHHHHHTTC-C-EECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred cchhhhhhhhhcc--CCHHHHHHHHHHcCc-c-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHH
Confidence 3667888999999 999999999999987 5 99999999999999999999999999999999999999999999999
Q ss_pred CCh
Q 032701 103 GDE 105 (135)
Q Consensus 103 nD~ 105 (135)
+..
T Consensus 93 ~~g 95 (103)
T 2yfw_B 93 RQG 95 (103)
T ss_dssp HHC
T ss_pred HcC
Confidence 543
No 15
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.26 E-value=9.8e-12 Score=93.75 Aligned_cols=71 Identities=21% Similarity=0.185 Sum_probs=67.0
Q ss_pred cccCcccchhHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHHhhCC
Q 032701 32 SRAGLQFPVGRVHRLLKERAAAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGD 104 (135)
Q Consensus 32 sRagL~FPVsrv~r~L~~~~~~~~RIs~~ApVyLaAvLEYL~aEILelAg~~A~~~~~~rItP~hI~~aI~nD 104 (135)
.+.++.||++.|.|+|++. ... |||+.|.++|..+||||+.+|...|...|+..+++.|+++||.+|++++
T Consensus 77 d~~~l~lP~a~V~Ri~k~~-g~~-RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~~ 147 (154)
T 1f1e_A 77 DYDGELFGRATVRRILKRA-GIE-RASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITYS 147 (154)
T ss_dssp TCCSCCCCHHHHHHHHHHT-TCC-EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred ccccccCCccHHHHHHHHc-CCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence 4789999999999999999 555 9999999999999999999999999999999999999999999999854
No 16
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=98.98 E-value=1.8e-09 Score=70.23 Aligned_cols=64 Identities=27% Similarity=0.388 Sum_probs=60.2
Q ss_pred ccchhHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHHhh
Q 032701 37 QFPVGRVHRLLKERAAAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 102 (135)
Q Consensus 37 ~FPVsrv~r~L~~~~~~~~RIs~~ApVyLaAvLEYL~aEILelAg~~A~~~~~~rItP~hI~~aI~ 102 (135)
.||.+.|.|+|++. .. .||++.|...|.-++|+|+.+|.+.|...|...+++.|+|+||++|++
T Consensus 2 ~lP~a~v~Ri~k~~-~~-~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~ 65 (68)
T 1b67_A 2 ELPIAPIGRIIKNA-GA-ERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARK 65 (68)
T ss_dssp CSCHHHHHHHHHHT-TC-SEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGG
T ss_pred CCCccHHHHHHhcC-Cc-ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 48999999999999 44 499999999999999999999999999999999999999999999986
No 17
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=98.91 E-value=4.8e-09 Score=73.94 Aligned_cols=78 Identities=15% Similarity=0.236 Sum_probs=63.4
Q ss_pred CCCCCCCcccccCcccchhHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHHhh
Q 032701 23 DKKKPVSRSSRAGLQFPVGRVHRLLKERAAAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 102 (135)
Q Consensus 23 ~~~~~~s~SsRagL~FPVsrv~r~L~~~~~~~~RIs~~ApVyLaAvLEYL~aEILelAg~~A~~~~~~rItP~hI~~aI~ 102 (135)
++.+++.+.+..+ +|..-|.|+++.... . |||..+..-|..+|||++.+|+.-|...++..+++.|+++||.+|++
T Consensus 16 kr~~k~~r~~i~~--ip~~~I~Rlar~~Gv-~-rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALk 91 (102)
T 1id3_B 16 KRHRKILRDNIQG--ITKPAIRRLARRGGV-K-RISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALK 91 (102)
T ss_dssp --------CCGGG--SCHHHHHHHHHHTTC-C-EECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred chHHHHHHhccCC--CCHHHHHHHHHHcCc-h-hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHH
Confidence 4556666766666 677789999998865 4 99999999999999999999999999999999999999999999998
Q ss_pred CC
Q 032701 103 GD 104 (135)
Q Consensus 103 nD 104 (135)
..
T Consensus 92 r~ 93 (102)
T 1id3_B 92 RQ 93 (102)
T ss_dssp HT
T ss_pred Hc
Confidence 43
No 18
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=98.90 E-value=5.1e-09 Score=68.63 Aligned_cols=65 Identities=28% Similarity=0.395 Sum_probs=61.1
Q ss_pred ccchhHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHHhhC
Q 032701 37 QFPVGRVHRLLKERAAAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG 103 (135)
Q Consensus 37 ~FPVsrv~r~L~~~~~~~~RIs~~ApVyLaAvLEYL~aEILelAg~~A~~~~~~rItP~hI~~aI~n 103 (135)
.||.+.|.|++++... . |++..+...|..++|+++.+|++.|...|...+++.|+++||++|+++
T Consensus 6 ~lp~a~v~Rl~r~~g~-~-ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~~ 70 (70)
T 1ku5_A 6 ELPIAPVDRLIRKAGA-E-RVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIKS 70 (70)
T ss_dssp CSCHHHHHHHHHHTTC-S-EECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHTC
T ss_pred cCChHHHHHHHHHcCc-c-eeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHC
Confidence 6899999999999854 4 999999999999999999999999999999999999999999999875
No 19
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=98.64 E-value=8.9e-08 Score=65.83 Aligned_cols=69 Identities=16% Similarity=0.270 Sum_probs=62.2
Q ss_pred cCcccchhHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHHhh
Q 032701 34 AGLQFPVGRVHRLLKERAAAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 102 (135)
Q Consensus 34 agL~FPVsrv~r~L~~~~~~~~RIs~~ApVyLaAvLEYL~aEILelAg~~A~~~~~~rItP~hI~~aI~ 102 (135)
..+.||.++|.|+|++......||+..|...|+-+.|.|+.+|.+.|...|...+++.|+++||..|++
T Consensus 5 ~d~~LP~a~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~ 73 (93)
T 1n1j_A 5 QDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMS 73 (93)
T ss_dssp --CCCCHHHHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred ccccCChhHHHHHHHHhCCccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 367899999999999984323599999999999999999999999999999999999999999999997
No 20
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=98.51 E-value=1.3e-07 Score=68.96 Aligned_cols=74 Identities=18% Similarity=0.157 Sum_probs=62.1
Q ss_pred CcccchhHHHHHHhhc-cccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHHhhCChHHHH
Q 032701 35 GLQFPVGRVHRLLKER-AAAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDT 109 (135)
Q Consensus 35 gL~FPVsrv~r~L~~~-~~~~~RIs~~ApVyLaAvLEYL~aEILelAg~~A~~~~~~rItP~hI~~aI~nD~EL~~ 109 (135)
.+.||+++|.|+|++. ... .+|+..|++.|+-+.|.|+.+|...|...|...+++.|+++||..|+...+-+++
T Consensus 7 d~~LP~A~I~rImK~~~pd~-~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l~f~~f 81 (128)
T 2byk_B 7 DLNLPNAVIGRLIKEALPES-ASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTELDFESF 81 (128)
T ss_dssp ----CCSHHHHHHHHHSCTT-CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCTTT
T ss_pred cccCCHHHHHHHHHHhCccc-ceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCcHHH
Confidence 5789999999999964 333 4999999999999999999999999999999999999999999999997654433
No 21
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=98.47 E-value=5.4e-07 Score=59.93 Aligned_cols=65 Identities=20% Similarity=0.267 Sum_probs=59.8
Q ss_pred ccchhHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHHhh
Q 032701 37 QFPVGRVHRLLKERAAAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 102 (135)
Q Consensus 37 ~FPVsrv~r~L~~~~~~~~RIs~~ApVyLaAvLEYL~aEILelAg~~A~~~~~~rItP~hI~~aI~ 102 (135)
.+|.+.|.|+|++.... .+|+..|...+.-++|-|+.+|-.-|...|...+++.|+++||..|++
T Consensus 4 ~LP~A~V~rI~K~~~p~-~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~ 68 (76)
T 3b0c_W 4 TVPRGTLRKIIKKHKPH-LRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAK 68 (76)
T ss_dssp CCCHHHHHHHHHHHCTT-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHH
T ss_pred cccccHHHHHHHHhCCC-CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 58999999999976444 499999999999999999999999999999999999999999999986
No 22
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=98.22 E-value=5.5e-06 Score=56.05 Aligned_cols=65 Identities=17% Similarity=0.215 Sum_probs=60.3
Q ss_pred cchhHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHHhhCC
Q 032701 38 FPVGRVHRLLKERAAAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGD 104 (135)
Q Consensus 38 FPVsrv~r~L~~~~~~~~RIs~~ApVyLaAvLEYL~aEILelAg~~A~~~~~~rItP~hI~~aI~nD 104 (135)
+|..-|.|+++.... . |||..+..-|..++||++.+|+.-|...++..+++.|+++||.+|++..
T Consensus 11 ip~~~I~Riar~~Gv-~-rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~ 75 (84)
T 2hue_C 11 ITKPAIRRLARRGGV-K-RISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 75 (84)
T ss_dssp SCHHHHHHHHHHTTC-C-EECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTT
T ss_pred CCHHHHHHHHHHcCc-h-hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 677889999998865 4 9999999999999999999999999999999999999999999999854
No 23
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=98.19 E-value=4.4e-06 Score=62.80 Aligned_cols=65 Identities=14% Similarity=0.200 Sum_probs=60.4
Q ss_pred ccchhHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHHhh
Q 032701 37 QFPVGRVHRLLKERAAAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 102 (135)
Q Consensus 37 ~FPVsrv~r~L~~~~~~~~RIs~~ApVyLaAvLEYL~aEILelAg~~A~~~~~~rItP~hI~~aI~ 102 (135)
-+|..-|.|+|++.-.+. |||..|...|+.++|.|..+|...|...|...+++.|+++||.+|+.
T Consensus 4 ~LP~a~V~Riik~~lg~~-rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~~ 68 (154)
T 1f1e_A 4 ELPKAAIERIFRQGIGER-RLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALAD 68 (154)
T ss_dssp CCCHHHHHHHHHTTSTTC-EECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHH
T ss_pred cCCccHHHHHHHhcCCcc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 478888999999995555 99999999999999999999999999999999999999999999983
No 24
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=98.03 E-value=2.6e-05 Score=51.50 Aligned_cols=66 Identities=11% Similarity=0.160 Sum_probs=61.1
Q ss_pred CcccchhHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHHhh
Q 032701 35 GLQFPVGRVHRLLKERAAAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 102 (135)
Q Consensus 35 gL~FPVsrv~r~L~~~~~~~~RIs~~ApVyLaAvLEYL~aEILelAg~~A~~~~~~rItP~hI~~aI~ 102 (135)
...||+.-|+++.+.-.. . +|+..+...|+--+||-..||++-|.+.++..+++.++.+||+.|++
T Consensus 4 ~s~lp~~~v~~iaes~Gi-~-~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk 69 (70)
T 1taf_B 4 GSSISAESMKVIAESIGV-G-SLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLK 69 (70)
T ss_dssp SCCCCHHHHHHHHHHTTC-C-CBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC
T ss_pred cccCCHHHHHHHHHHCCC-C-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHc
Confidence 347899999999998776 4 89999999999999999999999999999999999999999999875
No 25
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=97.86 E-value=4.4e-05 Score=58.59 Aligned_cols=78 Identities=18% Similarity=0.252 Sum_probs=66.2
Q ss_pred cccCcccchhHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHHhhCChHHHHHh
Q 032701 32 SRAGLQFPVGRVHRLLKERAAAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI 111 (135)
Q Consensus 32 sRagL~FPVsrv~r~L~~~~~~~~RIs~~ApVyLaAvLEYL~aEILelAg~~A~~~~~~rItP~hI~~aI~nD~EL~~L~ 111 (135)
.-..+.||++.|.|+|++..- ..||+..|...|.-+++-|+..|--.|...|...+++.|+++||..|+. +-+|..++
T Consensus 10 ~~eD~~LP~A~V~RImK~alp-~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~-~LgF~~fv 87 (179)
T 1jfi_B 10 NDDDLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALE-SLGFGSYI 87 (179)
T ss_dssp --CCCCCCHHHHHHHHHHHST-TCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH-HHTTGGGH
T ss_pred chhhhhcCHHHHHHHHHHhCC-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH-hcChHHHH
Confidence 345678999999999999854 3599999999999999999999999999999999999999999999998 44444433
No 26
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=97.82 E-value=3e-05 Score=55.12 Aligned_cols=70 Identities=10% Similarity=0.031 Sum_probs=60.3
Q ss_pred CcccchhHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHHhhCChH
Q 032701 35 GLQFPVGRVHRLLKERAAAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEE 106 (135)
Q Consensus 35 gL~FPVsrv~r~L~~~~~~~~RIs~~ApVyLaAvLEYL~aEILelAg~~A~~~~~~rItP~hI~~aI~nD~E 106 (135)
.+.+|.+-|.|++++... .|||..+...|.-+++.++.+|..-|...|+..+++.|+++||.++++....
T Consensus 5 d~~lP~a~I~Ri~r~~g~--~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g~ 74 (111)
T 3b0c_T 5 EPEIASSLIKQIFSHYVK--TPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQGL 74 (111)
T ss_dssp -----CHHHHHHHHHHHC--SCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHHHCCC--CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCCC
Confidence 456899999999999855 4999999999999999999999999999999999999999999999996554
No 27
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=97.46 E-value=0.00055 Score=44.80 Aligned_cols=60 Identities=15% Similarity=0.086 Sum_probs=55.5
Q ss_pred HHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHHhhC
Q 032701 42 RVHRLLKERAAAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG 103 (135)
Q Consensus 42 rv~r~L~~~~~~~~RIs~~ApVyLaAvLEYL~aEILelAg~~A~~~~~~rItP~hI~~aI~n 103 (135)
-|+++|++... + |++..++..|.-.+|-.+.+|+.-|...|...+++.|+.+||++||+.
T Consensus 6 ~i~~iLk~~G~-~-~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~ 65 (68)
T 1taf_A 6 VIMSILKELNV-Q-EYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEV 65 (68)
T ss_dssp HHHHHHHHTTC-C-CBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHCCC-c-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHh
Confidence 47899998766 5 999999999999999999999999999999999999999999999974
No 28
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=97.34 E-value=0.00052 Score=49.10 Aligned_cols=79 Identities=11% Similarity=0.097 Sum_probs=65.0
Q ss_pred ccCcccchhHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHHhhCChHHHHHhh
Q 032701 33 RAGLQFPVGRVHRLLKERAAAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIK 112 (135)
Q Consensus 33 RagL~FPVsrv~r~L~~~~~~~~RIs~~ApVyLaAvLEYL~aEILelAg~~A~~~~~~rItP~hI~~aI~nD~EL~~L~~ 112 (135)
++.|.+.|+||=+-.-..+. ..+|..+...|+-+++..+.+|..-+...|+-.|++.|+++||.++++.++.|..+++
T Consensus 26 Kaal~y~V~rIvke~gaer~--~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~Rr~~~L~~~l~ 103 (113)
T 4dra_A 26 KAAVHYTVGCLCEEVALDKE--MQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARRSNSLLKYIT 103 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHT--CCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcC--CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHhCHHHHHHHH
Confidence 56778888887654332222 2589899999999988888888888888899999999999999999999999999887
Q ss_pred c
Q 032701 113 G 113 (135)
Q Consensus 113 ~ 113 (135)
.
T Consensus 104 ~ 104 (113)
T 4dra_A 104 D 104 (113)
T ss_dssp H
T ss_pred H
Confidence 5
No 29
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=97.28 E-value=0.00064 Score=48.15 Aligned_cols=79 Identities=15% Similarity=0.116 Sum_probs=64.9
Q ss_pred ccCcccchhHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHHhhCChHHHHHhh
Q 032701 33 RAGLQFPVGRVHRLLKERAAAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIK 112 (135)
Q Consensus 33 RagL~FPVsrv~r~L~~~~~~~~RIs~~ApVyLaAvLEYL~aEILelAg~~A~~~~~~rItP~hI~~aI~nD~EL~~L~~ 112 (135)
++.|+|-|+||-+-.-.... .|++..+...|+-.++.++.+|..-+...|+..|++.|+++||.++++.++.|...++
T Consensus 18 Kaal~~~V~rI~~~~g~~~~--~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rrn~~l~~~l~ 95 (107)
T 3b0b_B 18 RAAVHYTTGCLCQDVAEDKG--VLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLARRSNSLLKYIT 95 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHT--CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhcC--CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHhCHHHHHHHH
Confidence 55677788777654433222 3899999999999998889999999988999999999999999999999999888776
Q ss_pred c
Q 032701 113 G 113 (135)
Q Consensus 113 ~ 113 (135)
.
T Consensus 96 ~ 96 (107)
T 3b0b_B 96 Q 96 (107)
T ss_dssp H
T ss_pred H
Confidence 4
No 30
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=97.23 E-value=0.0012 Score=48.06 Aligned_cols=65 Identities=18% Similarity=0.221 Sum_probs=58.3
Q ss_pred cccchhHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHHhh
Q 032701 36 LQFPVGRVHRLLKERAAAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 102 (135)
Q Consensus 36 L~FPVsrv~r~L~~~~~~~~RIs~~ApVyLaAvLEYL~aEILelAg~~A~~~~~~rItP~hI~~aI~ 102 (135)
-.|.+ .|+++|++-.-.. .||+.|.-.|...++.+...|-.-|...++.+++..|++++||.|++
T Consensus 36 esy~~-YIyKVLKQVhpd~-gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvr 100 (126)
T 1tzy_B 36 ESYSI-YVYKVLKQVHPDT-GISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVR 100 (126)
T ss_dssp CCCHH-HHHHHHHHHCTTC-EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred ccHHH-HHHHHHHHhCCCC-CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 45666 7999999887654 89999999999999999999999999999999999999999999987
No 31
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=97.23 E-value=0.001 Score=48.25 Aligned_cols=64 Identities=17% Similarity=0.199 Sum_probs=57.0
Q ss_pred ccchhHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHHhh
Q 032701 37 QFPVGRVHRLLKERAAAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 102 (135)
Q Consensus 37 ~FPVsrv~r~L~~~~~~~~RIs~~ApVyLaAvLEYL~aEILelAg~~A~~~~~~rItP~hI~~aI~ 102 (135)
.|. ..|+++|++-.... .||+.|.-.|...++.+...|..-|...++-+++..|++++||.|++
T Consensus 34 sy~-~YIyKVLKQVhpd~-gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvr 97 (123)
T 2nqb_D 34 SYA-IYIYTVLKQVHPDT-GISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVR 97 (123)
T ss_dssp CSH-HHHHHHHHHHCTTC-EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHH
T ss_pred hHH-HHHHHHHHHhCCCC-CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHH
Confidence 354 47899999887654 89999999999999999999999999999999999999999999987
No 32
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=97.21 E-value=0.00091 Score=46.00 Aligned_cols=79 Identities=10% Similarity=-0.005 Sum_probs=59.3
Q ss_pred ccCcccchhHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHHhhCChHHHHHhh
Q 032701 33 RAGLQFPVGRVHRLLKERAAAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIK 112 (135)
Q Consensus 33 RagL~FPVsrv~r~L~~~~~~~~RIs~~ApVyLaAvLEYL~aEILelAg~~A~~~~~~rItP~hI~~aI~nD~EL~~L~~ 112 (135)
++.|++-|++|-.-.-+... ..++..+...|+-.++-.+.+|..-+...|+..|++.|+++||.++++.++.|..++.
T Consensus 11 Kaal~~~V~ki~~e~~~~~g--~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~Rrn~~L~~~l~ 88 (90)
T 3v9r_A 11 KARLWIRVEERLQQVLSSED--IKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLRKQPDLQERVT 88 (90)
T ss_dssp HHHHHHHHHHHHHHHSCSSC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhcC--ceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhChHHHHHhh
Confidence 45567777776443311111 2577777777777777777777777778899999999999999999999999998875
Q ss_pred c
Q 032701 113 G 113 (135)
Q Consensus 113 ~ 113 (135)
+
T Consensus 89 ~ 89 (90)
T 3v9r_A 89 Q 89 (90)
T ss_dssp C
T ss_pred c
Confidence 3
No 33
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=97.09 E-value=0.0026 Score=42.50 Aligned_cols=67 Identities=22% Similarity=0.184 Sum_probs=55.2
Q ss_pred cccchhHHHHHHhhccc---cccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHHhh
Q 032701 36 LQFPVGRVHRLLKERAA---AHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 102 (135)
Q Consensus 36 L~FPVsrv~r~L~~~~~---~~~RIs~~ApVyLaAvLEYL~aEILelAg~~A~~~~~~rItP~hI~~aI~ 102 (135)
|.+|..=+.|++++-.. ...|++++|-..|.-+.|....++.|-+..-|...++..|.|+||++|.+
T Consensus 2 lli~k~PF~RLVRei~~~~~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~r 71 (77)
T 2hue_B 2 ALIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARR 71 (77)
T ss_dssp CCSCHHHHHHHHHHHHHTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred CccccchHHHHHHHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHH
Confidence 44566666677766511 12599999999999999999999999999989999999999999999976
No 34
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=97.07 E-value=0.0013 Score=48.56 Aligned_cols=79 Identities=15% Similarity=0.129 Sum_probs=65.6
Q ss_pred ccCcccchhHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHHhhCChHHHHHhh
Q 032701 33 RAGLQFPVGRVHRLLKERAAAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIK 112 (135)
Q Consensus 33 RagL~FPVsrv~r~L~~~~~~~~RIs~~ApVyLaAvLEYL~aEILelAg~~A~~~~~~rItP~hI~~aI~nD~EL~~L~~ 112 (135)
++.|+|-|++|-.-.-.... ..|+..+...|+-+++..+.+|..-+...|+..+++.|+++||.++++.++.|..++.
T Consensus 18 KaAl~y~VgkIvee~~~~~~--~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rrn~~L~~~L~ 95 (140)
T 3vh5_A 18 RAAVHYTTGALAQDVAEDKG--VLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLARRSNSLLKYIT 95 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHT--CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcC--CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhCHHHHHHHH
Confidence 56678888887654433222 3689999999999998888888888888899999999999999999999999999987
Q ss_pred c
Q 032701 113 G 113 (135)
Q Consensus 113 ~ 113 (135)
.
T Consensus 96 ~ 96 (140)
T 3vh5_A 96 Q 96 (140)
T ss_dssp H
T ss_pred H
Confidence 5
No 35
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=96.93 E-value=0.0033 Score=43.00 Aligned_cols=64 Identities=22% Similarity=0.377 Sum_probs=53.4
Q ss_pred ccchhHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHH-hCCCceechhhHHHHhh
Q 032701 37 QFPVGRVHRLLKERAAAHGRVGATAAVYTAAILEYLTAEVLELAGNASK-DLKVKRITPRHLQLAIR 102 (135)
Q Consensus 37 ~FPVsrv~r~L~~~~~~~~RIs~~ApVyLaAvLEYL~aEILelAg~~A~-~~~~~rItP~hI~~aI~ 102 (135)
.||-..|+|+++.-.. + .++....+.|+++--.|+.||+|.|..... +.....|.|.||+.|.+
T Consensus 16 ~f~k~~vKrl~~~~~~-~-~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~HireA~r 80 (89)
T 1bh9_B 16 AFPKAAIKRLIQSITG-T-SVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVR 80 (89)
T ss_dssp CCCHHHHHHHHHHHHS-S-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHcC-C-CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHH
Confidence 4666679999977654 4 899999999999999999999999988754 44567899999999876
No 36
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=96.92 E-value=0.0039 Score=42.13 Aligned_cols=65 Identities=20% Similarity=0.067 Sum_probs=54.2
Q ss_pred ccchhHHHHHHhhcc------ccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHHhh
Q 032701 37 QFPVGRVHRLLKERA------AAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 102 (135)
Q Consensus 37 ~FPVsrv~r~L~~~~------~~~~RIs~~ApVyLaAvLEYL~aEILelAg~~A~~~~~~rItP~hI~~aI~ 102 (135)
.+|..-|.|++++-. .. .|++++|-..|--+.|....++.|-+..-|...++..|.|+||++|.+
T Consensus 3 LI~klPF~RLVREI~~~~~~~~~-~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~r 73 (82)
T 3nqj_A 3 LIRKLPFSRLAREICVKFTRGVD-FNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARR 73 (82)
T ss_dssp SSCHHHHHHHHHHHHHHHHSSCC-CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred CcccccHHHHHHHHHHHhccCcc-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHH
Confidence 345555666666544 23 499999999999999999999999999989999999999999999876
No 37
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=96.89 E-value=0.0026 Score=47.80 Aligned_cols=71 Identities=20% Similarity=0.058 Sum_probs=59.9
Q ss_pred ccCcccchhHHHHHHhhccc-----cccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHHhhC
Q 032701 33 RAGLQFPVGRVHRLLKERAA-----AHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG 103 (135)
Q Consensus 33 RagL~FPVsrv~r~L~~~~~-----~~~RIs~~ApVyLaAvLEYL~aEILelAg~~A~~~~~~rItP~hI~~aI~n 103 (135)
-.+|.+|..-|.|+++|-.. ...|++++|...|--+.|.++.+++|-+...|...++..|.|+||++|.+=
T Consensus 73 SteLLIpKlPF~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEdanLcAiHAkRVTIm~kDIqLArrI 148 (156)
T 3r45_A 73 STHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRI 148 (156)
T ss_dssp --CCCSCHHHHHHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHHH
T ss_pred ccccccccccHHHHHHHHHHHhccCccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHH
Confidence 35788888888888887651 124999999999999999999999999988888889999999999999763
No 38
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=96.78 E-value=0.0056 Score=44.96 Aligned_cols=69 Identities=23% Similarity=0.199 Sum_probs=59.3
Q ss_pred cCcccchhHHHHHHhhccc---cccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHHhh
Q 032701 34 AGLQFPVGRVHRLLKERAA---AHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 102 (135)
Q Consensus 34 agL~FPVsrv~r~L~~~~~---~~~RIs~~ApVyLaAvLEYL~aEILelAg~~A~~~~~~rItP~hI~~aI~ 102 (135)
..|.+|..-|.|++++-.. ...|++++|-..|.-+.|....+++|.+..-|...++..|.|+||++|.+
T Consensus 59 t~lLIpk~PF~RLVREI~~~~~~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~r 130 (136)
T 1tzy_C 59 TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
T ss_dssp CSCCSCHHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred hhhhhccchHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHHHHH
Confidence 4677888888888877621 12599999999999999999999999999999999999999999999975
No 39
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=96.72 E-value=0.0054 Score=45.29 Aligned_cols=68 Identities=21% Similarity=0.080 Sum_probs=58.9
Q ss_pred cCcccchhHHHHHHhhcc------ccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHHhh
Q 032701 34 AGLQFPVGRVHRLLKERA------AAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 102 (135)
Q Consensus 34 agL~FPVsrv~r~L~~~~------~~~~RIs~~ApVyLaAvLEYL~aEILelAg~~A~~~~~~rItP~hI~~aI~ 102 (135)
.+|.+|..-|.|+++|-. .. .|++++|...|--+.|.++.+++|-+..-|...++..|.|+||++|.+
T Consensus 58 t~LLIpKlPF~RLVREI~~~~~~~~~-~Rfq~~Al~ALQEAaEayLv~LFEdanlcAiHAkRVTIm~kDiqLArr 131 (140)
T 3nqu_A 58 THLLIRKLPFSRLAREICVKFTRGVD-FNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARR 131 (140)
T ss_dssp -CCCSCTTHHHHHHHHHHHHHHTTCC-CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred cccccccccHHHHHHHHHHHhccccc-ceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHH
Confidence 567788888888887755 23 499999999999999999999999999989989999999999999876
No 40
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=96.69 E-value=0.0064 Score=42.48 Aligned_cols=69 Identities=23% Similarity=0.128 Sum_probs=56.6
Q ss_pred cCcccchhHHHHHHhhcccc------ccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHHhh
Q 032701 34 AGLQFPVGRVHRLLKERAAA------HGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 102 (135)
Q Consensus 34 agL~FPVsrv~r~L~~~~~~------~~RIs~~ApVyLaAvLEYL~aEILelAg~~A~~~~~~rItP~hI~~aI~ 102 (135)
.+|.+|..-|.|++++-... ..|++++|-..|.-+.|....+++|.+..-|...++..|.|+||++|.+
T Consensus 24 t~llIpk~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~r 98 (100)
T 2yfv_A 24 TDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDMQLARR 98 (100)
T ss_dssp ----CCHHHHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred chhhhccccHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHH
Confidence 57788888888888776521 2499999999999999999999999999989999999999999999864
No 41
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=96.48 E-value=0.0074 Score=46.21 Aligned_cols=61 Identities=15% Similarity=0.205 Sum_probs=54.1
Q ss_pred hHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHHhh
Q 032701 41 GRVHRLLKERAAAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 102 (135)
Q Consensus 41 srv~r~L~~~~~~~~RIs~~ApVyLaAvLEYL~aEILelAg~~A~~~~~~rItP~hI~~aI~ 102 (135)
..|+|.|++..... .|++.|..+|...++.+...|...|...+..++++.||+++|+.|++
T Consensus 7 ~yi~kvLkqv~p~~-~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avr 67 (192)
T 2jss_A 7 SYIYKVLKQTHPDT-GISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVR 67 (192)
T ss_dssp HHHHHHHHHHCSSC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHH
T ss_pred HHHHHHHcccCCCC-CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Confidence 36899999887654 89999999999999999888888888888889999999999999987
No 42
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=96.08 E-value=0.032 Score=37.83 Aligned_cols=69 Identities=19% Similarity=0.192 Sum_probs=56.8
Q ss_pred ccCcccchhHHHHHHhhccc-cccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHHh
Q 032701 33 RAGLQFPVGRVHRLLKERAA-AHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAI 101 (135)
Q Consensus 33 RagL~FPVsrv~r~L~~~~~-~~~RIs~~ApVyLaAvLEYL~aEILelAg~~A~~~~~~rItP~hI~~aI 101 (135)
.++..||..-|.|+|+..-- .+-||+..|-..++..|+.|+.|.+-.|...|...+...|..+||+...
T Consensus 8 ~~~~~i~~~li~ril~~~F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~e~LEki~ 77 (84)
T 4dra_E 8 GAGSGFRKELVSRLLHLHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAEDALRVDVDQLEKVL 77 (84)
T ss_dssp ---CCCCHHHHHHHHHTTCSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 34668999999999985432 2359999999999999999999999999998887777889999998753
No 43
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=96.06 E-value=0.032 Score=37.51 Aligned_cols=67 Identities=19% Similarity=0.264 Sum_probs=57.0
Q ss_pred CcccchhHHHHHHhhcccc-ccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHHh
Q 032701 35 GLQFPVGRVHRLLKERAAA-HGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAI 101 (135)
Q Consensus 35 gL~FPVsrv~r~L~~~~~~-~~RIs~~ApVyLaAvLEYL~aEILelAg~~A~~~~~~rItP~hI~~aI 101 (135)
.-.||..-|.|+|+..-.. .-||+.+|-..++..|+.|+.|.+..|...|...+...|..+||+...
T Consensus 6 ~~~~~~~lI~ril~~~f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~~~LEki~ 73 (81)
T 3b0b_C 6 EGGFRKETVERLLRLHFRDGRTRVNGDALLLMAELLKVFVREAAARAARQAQAEDLEKVDIEHVEKVL 73 (81)
T ss_dssp -CCCCHHHHHHHHHHHCCSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecHHHHHHHH
Confidence 4579999999999874331 359999999999999999999999999999988888899999998743
No 44
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=95.76 E-value=0.028 Score=40.51 Aligned_cols=48 Identities=17% Similarity=0.176 Sum_probs=45.9
Q ss_pred cccCcchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHHhh
Q 032701 55 GRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 102 (135)
Q Consensus 55 ~RIs~~ApVyLaAvLEYL~aEILelAg~~A~~~~~~rItP~hI~~aI~ 102 (135)
.|||..+-.-+..+||.+..+|+.-|...+...+++.|+..||..|++
T Consensus 63 kRIS~~iy~e~r~vl~~~l~~i~rdav~yaehA~RKTVta~DV~~Alk 110 (121)
T 2ly8_A 63 KRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALK 110 (121)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHH
Confidence 399999999999999999999999999999999999999999999986
No 45
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=95.44 E-value=0.018 Score=45.80 Aligned_cols=58 Identities=14% Similarity=0.103 Sum_probs=52.8
Q ss_pred HHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHHhh
Q 032701 43 VHRLLKERAAAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 102 (135)
Q Consensus 43 v~r~L~~~~~~~~RIs~~ApVyLaAvLEYL~aEILelAg~~A~~~~~~rItP~hI~~aI~ 102 (135)
+.|+.+.+.. + |||..+-.-+..+||.+..+|+.-|..++...+++.|++.||.+|++
T Consensus 167 ~~RlaRrgGV-k-RIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALK 224 (235)
T 2l5a_A 167 DEEDGDKGGV-K-RISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALK 224 (235)
T ss_dssp CCTTSCCTTC-C-TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHH
T ss_pred HHHHhhcCCc-h-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHH
Confidence 4477777765 5 99999999999999999999999999999999999999999999987
No 46
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=90.70 E-value=0.38 Score=33.41 Aligned_cols=40 Identities=18% Similarity=0.208 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHhCCCceechhhHHHHhhCChHHHHHhh
Q 032701 73 TAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIK 112 (135)
Q Consensus 73 ~aEILelAg~~A~~~~~~rItP~hI~~aI~nD~EL~~L~~ 112 (135)
+.++|+.|-..|...+...|+|+||-+++-.|++...+|.
T Consensus 6 ~~~~l~~A~~~A~~~~~~~i~~eHlLlaLl~~~~~~~iL~ 45 (143)
T 1k6k_A 6 LELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALE 45 (143)
T ss_dssp HHHHHHHHHHHHHHHTBSEECHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCcCHHHHHHHHHcCchHHHHHH
Confidence 3578899999999999999999999999988877666654
No 47
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=90.34 E-value=1.9 Score=28.35 Aligned_cols=66 Identities=12% Similarity=0.195 Sum_probs=57.2
Q ss_pred ccchhHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHHhhC
Q 032701 37 QFPVGRVHRLLKERAAAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG 103 (135)
Q Consensus 37 ~FPVsrv~r~L~~~~~~~~RIs~~ApVyLaAvLEYL~aEILelAg~~A~~~~~~rItP~hI~~aI~n 103 (135)
.++-.++..++++-.... .+...+--.|.-+-+=|+..+++.|+..|+.-+...+.++||++.+..
T Consensus 5 vl~k~~L~~Lv~~idp~~-~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Ler 70 (76)
T 1h3o_B 5 VLTKKKLQDLVREVDPNE-QLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLER 70 (76)
T ss_dssp SSCHHHHHHHHHHHCSSC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHH
T ss_pred cccHHHHHHHHHhcCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHh
Confidence 456678888888766554 899999999999999999999999999999988889999999988763
No 48
>1wwi_A Hypothetical protein TTHA1479; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 1.58A {Thermus thermophilus HB8} SCOP: a.22.1.4 PDB: 1wws_A
Probab=86.07 E-value=3 Score=30.82 Aligned_cols=59 Identities=19% Similarity=0.162 Sum_probs=51.6
Q ss_pred ccchhHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhH
Q 032701 37 QFPVGRVHRLLKERAAAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHL 97 (135)
Q Consensus 37 ~FPVsrv~r~L~~~~~~~~RIs~~ApVyLaAvLEYL~aEILelAg~~A~~~~~~rItP~hI 97 (135)
.+++.++++++++.-.- -|..+-.-=+..++|-=..++++.|-..|+.+++.-|.|.||
T Consensus 2 vm~~~~~e~lFR~aa~L--dvdK~d~~r~~d~V~~Kl~DLl~va~~~Ak~n~RdvI~~~DL 60 (148)
T 1wwi_A 2 LMKVAEFERLFRQAAGL--DVDKNDLKRVSDFLRNKLYDLLAVAERNAKYNGRDLIFEPDL 60 (148)
T ss_dssp CSCHHHHHHHHHHHHCC--CCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECGGGS
T ss_pred cCCHHHHHHHHHHHhcc--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccC
Confidence 46889999999987653 577877777888899999999999999999999999999997
No 49
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=85.96 E-value=1 Score=31.19 Aligned_cols=32 Identities=25% Similarity=0.170 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhCCCceechhhHHHHhhCCh
Q 032701 74 AEVLELAGNASKDLKVKRITPRHLQLAIRGDE 105 (135)
Q Consensus 74 aEILelAg~~A~~~~~~rItP~hI~~aI~nD~ 105 (135)
.++|+.|-..|...+...|+|+||-+++-.|+
T Consensus 11 ~~~l~~A~~~A~~~~~~~i~~eHlLlaLl~~~ 42 (148)
T 1khy_A 11 QLALADAQSLALGHDNQFIEPLHLMSALLNQE 42 (148)
T ss_dssp HHHHHHHHHHHHHTTCSSBCHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHcCCCccCHHHHHHHHHcCC
Confidence 57889999999999999999999999997665
No 50
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=85.84 E-value=0.67 Score=32.34 Aligned_cols=39 Identities=23% Similarity=0.322 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHhCCCceechhhHHHHhhCChH--HHHHhh
Q 032701 74 AEVLELAGNASKDLKVKRITPRHLQLAIRGDEE--LDTLIK 112 (135)
Q Consensus 74 aEILelAg~~A~~~~~~rItP~hI~~aI~nD~E--L~~L~~ 112 (135)
.++|+.|-..|...+...|+|+||-+++-.+++ ...++.
T Consensus 11 ~~al~~A~~~A~~~~h~~i~~eHlLlaLl~~~~~~~~~iL~ 51 (150)
T 2y1q_A 11 QKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQ 51 (150)
T ss_dssp HHHHHHHHHHHHHTTCSEECHHHHHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCCCHHHHHHH
Confidence 578899999999999999999999999875543 444443
No 51
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=84.78 E-value=0.98 Score=31.76 Aligned_cols=40 Identities=18% Similarity=0.296 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHhCCCceechhhHHHHhhCCh--HHHHHhh
Q 032701 73 TAEVLELAGNASKDLKVKRITPRHLQLAIRGDE--ELDTLIK 112 (135)
Q Consensus 73 ~aEILelAg~~A~~~~~~rItP~hI~~aI~nD~--EL~~L~~ 112 (135)
+.++|+.|...|...+...|+|+||-+++-.|+ ....++.
T Consensus 12 a~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~~~~~iL~ 53 (145)
T 3fes_A 12 AKKAIDLAFESAKSLGHNIVGSEHILLGLLREEEGIAAKVLS 53 (145)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCCChHHHHHH
Confidence 367889999999999999999999999987654 3444443
No 52
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=84.36 E-value=0.98 Score=31.73 Aligned_cols=39 Identities=18% Similarity=0.245 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHhCCCceechhhHHHHhhCC--hHHHHHhh
Q 032701 74 AEVLELAGNASKDLKVKRITPRHLQLAIRGD--EELDTLIK 112 (135)
Q Consensus 74 aEILelAg~~A~~~~~~rItP~hI~~aI~nD--~EL~~L~~ 112 (135)
.++|+.|...|...+...|+|+||-+++-.| .....++.
T Consensus 12 ~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~~~~~iL~ 52 (146)
T 3fh2_A 12 RRVIVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALE 52 (146)
T ss_dssp HHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCchHHHHHHHHHhCCCChHHHHHH
Confidence 6788999999999999999999999998765 34444443
No 53
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=79.45 E-value=1.8 Score=31.93 Aligned_cols=49 Identities=14% Similarity=0.175 Sum_probs=36.7
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHHhCCCceechhhHHHHhhCCh--HHHHHhh
Q 032701 64 YTAAILEYLT---AEVLELAGNASKDLKVKRITPRHLQLAIRGDE--ELDTLIK 112 (135)
Q Consensus 64 yLaAvLEYL~---aEILelAg~~A~~~~~~rItP~hI~~aI~nD~--EL~~L~~ 112 (135)
.+...++-|+ .++|+.|...|...+...|.|+||-+++-.|+ ....++.
T Consensus 17 ~l~~~~~kfT~~a~~aL~~A~~~A~~~~h~~I~~EHLLlaLL~~~~~~a~~iL~ 70 (171)
T 3zri_A 17 ELPTLIAKLNAQSKLALEQAASLCIERQHPEVTLEHYLDVLLDNPLSDVRLVLK 70 (171)
T ss_dssp CHHHHHHHBCHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHTTCTTSHHHHHHH
T ss_pred hHHHHHHHcCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHccCcHHHHHHH
Confidence 3445555554 56788999999999999999999999998764 3444443
No 54
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=78.94 E-value=1.6 Score=30.63 Aligned_cols=40 Identities=30% Similarity=0.500 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHhCCCceechhhHHHHhhCChH--HHHHhh
Q 032701 73 TAEVLELAGNASKDLKVKRITPRHLQLAIRGDEE--LDTLIK 112 (135)
Q Consensus 73 ~aEILelAg~~A~~~~~~rItP~hI~~aI~nD~E--L~~L~~ 112 (135)
+..+|+.|...|...+...|+++||-+|+-.|++ ...+|.
T Consensus 86 ~~~vl~~A~~~A~~~~~~~v~~eHlLlAll~~~~~~a~~iL~ 127 (145)
T 3fes_A 86 SKQILELSGMFANKLKTNYIGTEHILLAIIQEGEGIANKILN 127 (145)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcccHHHHHHHHHhCCCcHHHHHHH
Confidence 4577899999999999999999999999975543 555654
No 55
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=78.65 E-value=2.1 Score=30.00 Aligned_cols=40 Identities=20% Similarity=0.194 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHhCCCceechhhHHHHhhCCh--HHHHHhhc
Q 032701 74 AEVLELAGNASKDLKVKRITPRHLQLAIRGDE--ELDTLIKG 113 (135)
Q Consensus 74 aEILelAg~~A~~~~~~rItP~hI~~aI~nD~--EL~~L~~~ 113 (135)
.++|+.|...|...+...|+++||-+++-.|+ ....+|..
T Consensus 87 ~~vL~~A~~~a~~~~~~~i~~eHlLlall~~~~~~a~~iL~~ 128 (146)
T 3fh2_A 87 KKVLELSLREGLQMGHKYIGTEFLLLGLIREGEGVAAQVLVK 128 (146)
T ss_dssp HHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcCcHHHHHHHHHhCCCcHHHHHHHH
Confidence 57888999999999999999999999997544 45566653
No 56
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=74.64 E-value=9.6 Score=30.07 Aligned_cols=47 Identities=21% Similarity=0.073 Sum_probs=41.1
Q ss_pred cccCcchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHHh
Q 032701 55 GRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAI 101 (135)
Q Consensus 55 ~RIs~~ApVyLaAvLEYL~aEILelAg~~A~~~~~~rItP~hI~~aI 101 (135)
.|..++|-..|--+-|..+-.++|.+.--|...++-.|.|.||++|-
T Consensus 35 lRfqs~Al~ALQEAaEayLV~LFEd~nLcaiHAkRVTim~kDiqLar 81 (235)
T 2l5a_A 35 LRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLAR 81 (235)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGTTHHHHHH
T ss_pred ceecHHHHHHHHHHHHHHHHHHHhhhHHHHhcccccccchhhHHHHH
Confidence 58899999889888888888899998877888888899999999984
No 57
>1r4v_A Hypothetical protein AQ_328; structural genomics, all-alpha, histon fold, PSI, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.90A {Aquifex aeolicus} SCOP: a.22.1.4
Probab=72.35 E-value=5.5 Score=30.06 Aligned_cols=60 Identities=5% Similarity=-0.049 Sum_probs=52.3
Q ss_pred ccchhHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHH
Q 032701 37 QFPVGRVHRLLKERAAAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQ 98 (135)
Q Consensus 37 ~FPVsrv~r~L~~~~~~~~RIs~~ApVyLaAvLEYL~aEILelAg~~A~~~~~~rItP~hI~ 98 (135)
.+++.++++++++.-.- -|..+-.-=+..++|-=+.++|+.|-..|+.+++.-|.|.||-
T Consensus 26 vmg~~kferlFR~aagL--DvdK~d~kr~~d~V~~Kl~DLl~va~~~Ak~NgRDvI~~~DLP 85 (171)
T 1r4v_A 26 PKGFDKLDHYFRTELDI--DLTDETIELLLNSVKAAFGKLFYGAEQRARWNGRDFIALADLN 85 (171)
T ss_dssp CTTHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTTCSEECGGGSC
T ss_pred cCChHHHHHHHHHHhcc--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccCC
Confidence 78999999999987653 5777777778888888899999999999999999999999973
No 58
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=72.17 E-value=5.9 Score=27.21 Aligned_cols=40 Identities=20% Similarity=0.210 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHhCCCceechhhHHHHhhC-ChHHHHHhh
Q 032701 73 TAEVLELAGNASKDLKVKRITPRHLQLAIRG-DEELDTLIK 112 (135)
Q Consensus 73 ~aEILelAg~~A~~~~~~rItP~hI~~aI~n-D~EL~~L~~ 112 (135)
+..+|+.|...|...+...|+++||-+++-. |.....++.
T Consensus 87 ~~~vl~~A~~~a~~~~~~~i~~ehlLlall~~~~~~~~~L~ 127 (148)
T 1khy_A 87 LVRVLNLCDKLAQKRGDNFISSELFVLAALESRGTLADILK 127 (148)
T ss_dssp HHHHHHHHHHHHHHHTCSSBCHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCeecHHHHHHHHHcCCcHHHHHHH
Confidence 4567889999998888999999999999984 334445554
No 59
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=71.95 E-value=4.1 Score=27.91 Aligned_cols=40 Identities=20% Similarity=0.180 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHhCCCceechhhHHHHhhCChH--HHHHhh
Q 032701 73 TAEVLELAGNASKDLKVKRITPRHLQLAIRGDEE--LDTLIK 112 (135)
Q Consensus 73 ~aEILelAg~~A~~~~~~rItP~hI~~aI~nD~E--L~~L~~ 112 (135)
+.++|+.|...|...+...|+++||-+++-.|++ ...++.
T Consensus 84 ~~~~l~~A~~~A~~~~~~~i~~ehLLlall~~~~~~~~~iL~ 125 (143)
T 1k6k_A 84 FQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQAAYLLR 125 (143)
T ss_dssp HHHHHHHHHHHHHSSSCSCBCHHHHHHHHTTCTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCccCHHHHHHHHHhCcCcHHHHHHH
Confidence 3578899999999989999999999999986653 344444
No 60
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=69.36 E-value=6.7 Score=34.31 Aligned_cols=40 Identities=18% Similarity=0.208 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHhCCCceechhhHHHHhhCChHHHHHhh
Q 032701 73 TAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIK 112 (135)
Q Consensus 73 ~aEILelAg~~A~~~~~~rItP~hI~~aI~nD~EL~~L~~ 112 (135)
+.++|+.|-..|...+...|+|+||-+++-.|++...++.
T Consensus 6 a~~~l~~A~~~A~~~~h~~i~~eHLLlaLl~~~~~~~iL~ 45 (758)
T 1r6b_X 6 LELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALE 45 (758)
T ss_dssp HHHHHHHHHHHHHHTTBSEECHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCccHHHHHHHHHcCcHHHHHHH
Confidence 3578899999999999999999999999998887666664
No 61
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=69.15 E-value=4.7 Score=29.57 Aligned_cols=32 Identities=22% Similarity=0.155 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHH-hCCCceechhhHHHHhhCCh
Q 032701 74 AEVLELAGNASK-DLKVKRITPRHLQLAIRGDE 105 (135)
Q Consensus 74 aEILelAg~~A~-~~~~~rItP~hI~~aI~nD~ 105 (135)
.++|+.|..+|. ..+...|+++||-+|+-.|+
T Consensus 104 ~~vL~~A~~~A~l~~gd~~I~teHLLLALl~~~ 136 (171)
T 3zri_A 104 VELLQEAWLLSSTELEQAELRSGAIFLAALTRA 136 (171)
T ss_dssp HHHHHHHHHHHHTTTCCSSBCHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHcCCCEEcHHHHHHHHHhCh
Confidence 577899999999 89999999999999998777
No 62
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=63.93 E-value=4.4 Score=28.02 Aligned_cols=33 Identities=18% Similarity=0.345 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHhCCCceechhhHHHHhhCCh
Q 032701 73 TAEVLELAGNASKDLKVKRITPRHLQLAIRGDE 105 (135)
Q Consensus 73 ~aEILelAg~~A~~~~~~rItP~hI~~aI~nD~ 105 (135)
+.++|+.|...|...+...|+++||-+++-.|+
T Consensus 84 ~~~vL~~A~~~A~~~~~~~i~~ehlLlall~~~ 116 (150)
T 2y1q_A 84 AKKVIELSMDEARKLGHSYVGTEHILLGLIREG 116 (150)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCCeecHHHHHHHHHhCC
Confidence 456788999999999999999999999997544
No 63
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=55.67 E-value=34 Score=25.49 Aligned_cols=46 Identities=17% Similarity=0.178 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCceechhhHHHHhhCChHHHHHhhc
Q 032701 67 AILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG 113 (135)
Q Consensus 67 AvLEYL~aEILelAg~~A~~~~~~rItP~hI~~aI~nD~EL~~L~~~ 113 (135)
+.+. .+.++++--...-...+.+-|+|-++..-|..|.|-..+|..
T Consensus 71 ~y~~-kV~dilrel~~~l~s~gvk~i~p~~l~~li~~d~~~~~~~a~ 116 (165)
T 2vxz_A 71 QYRQ-LVDGMIREVERLVTTNKLKFISPPRLHDLIIKDPQARKFFSS 116 (165)
T ss_dssp HHHH-HHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHSHHHHHHHHT
T ss_pred HHHH-HHHHHHHHHHHHHHHcCCeeeCcHHHHHHHHhCHHHHHHHHH
Confidence 4444 667777776666677899999999999999999999999987
No 64
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=49.71 E-value=12 Score=31.20 Aligned_cols=39 Identities=21% Similarity=0.261 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHhCCCceechhhHHHHhhCC--hHHHHHh
Q 032701 73 TAEVLELAGNASKDLKVKRITPRHLQLAIRGD--EELDTLI 111 (135)
Q Consensus 73 ~aEILelAg~~A~~~~~~rItP~hI~~aI~nD--~EL~~L~ 111 (135)
+.++|+.|-..|...+...|+|+||-+++-.+ .....++
T Consensus 10 a~~al~~A~~~A~~~~h~~v~~eHLLlaLl~~~~~~~~~iL 50 (468)
T 3pxg_A 10 AQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKAL 50 (468)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHSCCSHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcccHHHHHHHHHhccCcHHHHHH
Confidence 35778999999999999999999999998755 3444444
No 65
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=45.77 E-value=21 Score=31.27 Aligned_cols=38 Identities=21% Similarity=0.262 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhCCCceechhhHHHHhhCC--hHHHHHh
Q 032701 74 AEVLELAGNASKDLKVKRITPRHLQLAIRGD--EELDTLI 111 (135)
Q Consensus 74 aEILelAg~~A~~~~~~rItP~hI~~aI~nD--~EL~~L~ 111 (135)
.++|+.|-..|...+...|+|+||-+++-.| .....++
T Consensus 11 ~~~l~~A~~~A~~~~h~~i~~eHlLlaLl~~~~~~~~~iL 50 (758)
T 3pxi_A 11 QKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKAL 50 (758)
T ss_dssp HHHHHHHHHHHHHTTCSEECHHHHHHHHHHSCCSHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcccHHHHHHHHHhccCcHHHHHH
Confidence 5778999999999999999999999998755 3344444
No 66
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=42.43 E-value=16 Score=30.40 Aligned_cols=33 Identities=21% Similarity=0.375 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHhCCCceechhhHHHHhhCChH
Q 032701 74 AEVLELAGNASKDLKVKRITPRHLQLAIRGDEE 106 (135)
Q Consensus 74 aEILelAg~~A~~~~~~rItP~hI~~aI~nD~E 106 (135)
.++|+.|..+|...+...|.++||-+++-.|++
T Consensus 85 ~~vL~~A~~~A~~~g~~~I~teHLLlaLl~~~~ 117 (468)
T 3pxg_A 85 KKVIELSMDEARKLGHSYVGTEHILLGLIREGE 117 (468)
T ss_dssp HHHHHHHHHHHHTTTCSSBCHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHcCCCeecHHHHHHHHHhccc
Confidence 567889999999899999999999999986653
No 67
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=38.20 E-value=26 Score=31.37 Aligned_cols=34 Identities=26% Similarity=0.261 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHhCCCceechhhHHHHhhCChH
Q 032701 73 TAEVLELAGNASKDLKVKRITPRHLQLAIRGDEE 106 (135)
Q Consensus 73 ~aEILelAg~~A~~~~~~rItP~hI~~aI~nD~E 106 (135)
+.++|+.|...|...+...|+|+||-+++-.+++
T Consensus 10 a~~al~~A~~~A~~~~h~~i~~eHLLlaLl~~~~ 43 (854)
T 1qvr_A 10 AREALAQAQVLAQRMKHQAIDLPHLWAVLLKDER 43 (854)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHCCSSS
T ss_pred HHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCC
Confidence 3577899999999999999999999999976543
No 68
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=34.50 E-value=59 Score=19.87 Aligned_cols=19 Identities=11% Similarity=0.232 Sum_probs=14.7
Q ss_pred HHhCCCceechhhHHHHhh
Q 032701 84 SKDLKVKRITPRHLQLAIR 102 (135)
Q Consensus 84 A~~~~~~rItP~hI~~aI~ 102 (135)
|-..+...|+.+|+..|+.
T Consensus 53 a~~~~~~~i~~~d~~~Al~ 71 (78)
T 3kw6_A 53 ALRERRVHVTQEDFEMAVA 71 (78)
T ss_dssp HHHTTCSEECHHHHHHHHH
T ss_pred HHHhCCCCCCHHHHHHHHH
Confidence 3345677899999998886
No 69
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=33.74 E-value=1.5e+02 Score=22.34 Aligned_cols=63 Identities=19% Similarity=0.289 Sum_probs=41.6
Q ss_pred hhHHHHHHhhccc---cccccCcchHHHHHHHHH------HHHHHHHHHHHHHHHhCCCceechhhHHHHhh
Q 032701 40 VGRVHRLLKERAA---AHGRVGATAAVYTAAILE------YLTAEVLELAGNASKDLKVKRITPRHLQLAIR 102 (135)
Q Consensus 40 Vsrv~r~L~~~~~---~~~RIs~~ApVyLaAvLE------YL~aEILelAg~~A~~~~~~rItP~hI~~aI~ 102 (135)
...+..+++..-. ....++..+.-+++.... ...-.+++.+...|...+...|+.+|++.++.
T Consensus 203 ~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~ 274 (387)
T 2v1u_A 203 APQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARA 274 (387)
T ss_dssp HHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHH
Confidence 4555566654311 112567777777776665 34457778888777777788899999988775
No 70
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=33.20 E-value=26 Score=30.75 Aligned_cols=33 Identities=21% Similarity=0.375 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHhCCCceechhhHHHHhhCChH
Q 032701 74 AEVLELAGNASKDLKVKRITPRHLQLAIRGDEE 106 (135)
Q Consensus 74 aEILelAg~~A~~~~~~rItP~hI~~aI~nD~E 106 (135)
.++|+.|..+|...+...|.++||-+|+-.|++
T Consensus 85 ~~vl~~A~~~A~~~~~~~I~~ehlLlall~~~~ 117 (758)
T 3pxi_A 85 KKVIELSMDEARKLGHSYVGTEHILLGLIREGE 117 (758)
T ss_dssp HHHHHHHHHHHHTTTCSSBCHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHcCCCcccHHHHHHHHHhcCC
Confidence 577899999999999999999999999976653
No 71
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=31.28 E-value=36 Score=29.63 Aligned_cols=34 Identities=21% Similarity=0.152 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHhCCCceechhhHHHHhhCChH
Q 032701 73 TAEVLELAGNASKDLKVKRITPRHLQLAIRGDEE 106 (135)
Q Consensus 73 ~aEILelAg~~A~~~~~~rItP~hI~~aI~nD~E 106 (135)
+..+|+.|..+|...+...|+++||-+|+-.+++
T Consensus 84 ~~~vl~~A~~~a~~~~~~~I~~ehlLlall~~~~ 117 (758)
T 1r6b_X 84 FQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQE 117 (758)
T ss_dssp HHHHHHHHHHHHHHHTCSSBCHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHHHcCCCEeeHHHHHHHHhcccc
Confidence 4578899999998889999999999999987654
No 72
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=30.34 E-value=1.8e+02 Score=22.13 Aligned_cols=64 Identities=9% Similarity=0.022 Sum_probs=39.2
Q ss_pred hhHHHHHHhhcccc-ccccCcchHHHHHHHHH-HHHH---HHHHHHHHHHHhCCCceechhhHHHHhhC
Q 032701 40 VGRVHRLLKERAAA-HGRVGATAAVYTAAILE-YLTA---EVLELAGNASKDLKVKRITPRHLQLAIRG 103 (135)
Q Consensus 40 Vsrv~r~L~~~~~~-~~RIs~~ApVyLaAvLE-YL~a---EILelAg~~A~~~~~~rItP~hI~~aI~n 103 (135)
...+..+|+..-.. ...++..+.-+|+...+ .-.. .+++.|...|...+...|+.+|++.++..
T Consensus 261 ~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~ 329 (368)
T 3uk6_A 261 EKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSL 329 (368)
T ss_dssp HHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 34455555532110 12467777667666655 2233 45666666676778889999999988763
No 73
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=28.83 E-value=1.9e+02 Score=21.78 Aligned_cols=64 Identities=16% Similarity=0.246 Sum_probs=39.8
Q ss_pred hhHHHHHHhhcc---ccccccCcchHHHHHHHHH------HHHHHHHHHHHHHHHhCCCceechhhHHHHhhC
Q 032701 40 VGRVHRLLKERA---AAHGRVGATAAVYTAAILE------YLTAEVLELAGNASKDLKVKRITPRHLQLAIRG 103 (135)
Q Consensus 40 Vsrv~r~L~~~~---~~~~RIs~~ApVyLaAvLE------YL~aEILelAg~~A~~~~~~rItP~hI~~aI~n 103 (135)
...+..+++..- .....++..+.-+++.... +..-++++.++..+...+...|+.+|++.++..
T Consensus 199 ~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~ 271 (386)
T 2qby_A 199 AEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEE 271 (386)
T ss_dssp HHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHH
Confidence 345556665421 1012466677777776655 123346777777777677788999999877653
No 74
>3n22_A Protein S100-A2; EF-hand, calcium-binding, zinc-binding, tumor supressor, CAL binding protein; 1.30A {Homo sapiens} SCOP: a.39.1.2 PDB: 2rgi_A 4duq_A
Probab=26.77 E-value=1.3e+02 Score=19.28 Aligned_cols=45 Identities=18% Similarity=0.186 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHhCCCc-eechhhHHHHhhC-----------ChHHHHHhhc
Q 032701 69 LEYLTAEVLELAGNASKDLKVK-RITPRHLQLAIRG-----------DEELDTLIKG 113 (135)
Q Consensus 69 LEYL~aEILelAg~~A~~~~~~-rItP~hI~~aI~n-----------D~EL~~L~~~ 113 (135)
||.-+.++.+.--..+...+.. .|+...|..++.. +.++..+++.
T Consensus 6 le~~i~~l~~~F~~fd~~dgdgG~Is~~EL~~~l~~~lg~~l~~~~~~~ev~~~i~~ 62 (98)
T 3n22_A 6 LEQALAVLVTTFHKYSSQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMGS 62 (98)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSTTSBCHHHHHHHHHHHCHHHHCSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhhhhccCCCCHHHHHHHHHH
Confidence 4555566666555555344554 8999999887763 5678888875
No 75
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=25.85 E-value=1.1e+02 Score=18.98 Aligned_cols=44 Identities=14% Similarity=-0.024 Sum_probs=30.3
Q ss_pred ccCcchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHHhhC
Q 032701 56 RVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG 103 (135)
Q Consensus 56 RIs~~ApVyLaAvLEYL~aEILelAg~~A~~~~~~rItP~hI~~aI~n 103 (135)
.|...+.=|-.|=|+.++.|-...|.. .+...|+.+|+..|+..
T Consensus 24 ~lA~~t~G~SGADi~~l~~eAa~~ai~----~~~~~i~~~df~~Al~~ 67 (82)
T 2dzn_B 24 SLIIRNDSLSGAVIAAIMQEAGLRAVR----KNRYVILQSDLEEAYAT 67 (82)
T ss_dssp TTTTSSCCCCHHHHHHHHHHHHHHHHH----TTCSEECHHHHHHHHHT
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHH----hccCCcCHHHHHHHHHH
Confidence 455666667777777777765544433 35678999999988863
No 76
>3nso_A Protein S100-A3; EF-hand, Ca2+, Zn2+ binding, metal binding protein; 1.45A {Homo sapiens} SCOP: a.39.1.2 PDB: 3nsi_A 1kso_A 3nsk_A 3nsl_A
Probab=24.70 E-value=1.3e+02 Score=19.66 Aligned_cols=45 Identities=9% Similarity=0.089 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHhCC-CceechhhHHHHhhC-----------ChHHHHHhhc
Q 032701 69 LEYLTAEVLELAGNASKDLK-VKRITPRHLQLAIRG-----------DEELDTLIKG 113 (135)
Q Consensus 69 LEYL~aEILelAg~~A~~~~-~~rItP~hI~~aI~n-----------D~EL~~L~~~ 113 (135)
||.=+.+|.+.--..+...+ ...|+...|..++.+ ++++..+++.
T Consensus 5 le~~i~~l~~aF~~fd~~dg~~G~Is~~EL~~~l~~~l~~~lg~~~~~~ev~~~i~~ 61 (101)
T 3nso_A 5 LEQAVAAIVCTFQEYAGRCGDKYKLCQAELKELLQKELATWTPTEFRECDYNKFMSV 61 (101)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCTTEECHHHHHHHHHHHTTTCCCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCCCCCEECHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHH
Confidence 55556666665555553334 378999999887764 6678888864
No 77
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein, EF-finger, transport protein; 2.30A {Homo sapiens} SCOP: a.39.1.5
Probab=24.29 E-value=2e+02 Score=20.56 Aligned_cols=49 Identities=8% Similarity=-0.065 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHhCCCceechhhHHHHhhCChHHHHHhhc-cccCCcccCC
Q 032701 75 EVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPH 123 (135)
Q Consensus 75 EILelAg~~A~~~~~~rItP~hI~~aI~nD~EL~~L~~~-~ia~ggv~p~ 123 (135)
+.++........++...|+-+.....+.+++.+...|+- ....+-+.|+
T Consensus 173 ~~~~~~f~~~D~d~dG~Is~~EF~~~~~~~~~l~~~l~~~~~~~~~~~~~ 222 (224)
T 1s1e_A 173 QHVDVFFQKMDKNKDGIVTLDEFLESCQEDDNIMRSLQLFQNVMVEHHHH 222 (224)
T ss_dssp HHHHHHHHHHCTTCSSCEEHHHHHHHHHTCHHHHHHHHHHHHTTCC----
T ss_pred HHHHHHHHHhCCCCCCcEeHHHHHHHHHhCHHHHHHhcCCCCCCCccccc
Confidence 444555555555677889999999999999999888875 4444444443
No 78
>3ol3_A Putative uncharacterized protein; tuberculosis, RV0543C, ortholog, iodide ION S phasing, structural genomics; HET: PG4 PGE; 1.95A {Mycobacterium smegmatis} PDB: 3ol4_A
Probab=23.03 E-value=1.9e+02 Score=19.89 Aligned_cols=71 Identities=20% Similarity=0.209 Sum_probs=37.9
Q ss_pred hhHHHHHHhhccccccccCcchHHHHHHHHHH-HH-HHHHHHHHHHHHhCC-CceechhhHHHHhh-------CChHHHH
Q 032701 40 VGRVHRLLKERAAAHGRVGATAAVYTAAILEY-LT-AEVLELAGNASKDLK-VKRITPRHLQLAIR-------GDEELDT 109 (135)
Q Consensus 40 Vsrv~r~L~~~~~~~~RIs~~ApVyLaAvLEY-L~-aEILelAg~~A~~~~-~~rItP~hI~~aI~-------nD~EL~~ 109 (135)
+.+|-.||+.+ |-+ =|-..=-+-|-|+|-= |+ .||-+.+...+.... ...|+..+|..+|. +++++.+
T Consensus 13 l~siv~WLRaG-YPe-GVP~~Dy~PLlALL~R~Ltddev~~Va~~L~~~~~~~~pi~~~dI~~~It~vT~~~P~~eDi~R 90 (107)
T 3ol3_A 13 MDNVLGWLHKG-YPE-GVPPKDYFALLALLKRSLTEDEVVRAAQAILRSTDGQSPVTDDDIRNAVHQIIEKEPTAEEINQ 90 (107)
T ss_dssp HHHHHHHHHHH-CTT-CBCGGGHHHHHHHHTCCCCHHHHHHHHHHHHHHCCSSSCBCHHHHHHHHHHHHSSCCCHHHHHH
T ss_pred HHHHHHHHHcc-CCC-CCCCCccHHHHHHhcccCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHhcCCcCHHHHHH
Confidence 55666666655 433 2443333333333321 11 566667766555433 23589999988875 3445555
Q ss_pred Hhh
Q 032701 110 LIK 112 (135)
Q Consensus 110 L~~ 112 (135)
+-.
T Consensus 91 V~a 93 (107)
T 3ol3_A 91 VAA 93 (107)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 79
>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand, calcium-binding protein, guanylyl cyclase regulation, lyase; NMR {Bos taurus} SCOP: a.39.1.5
Probab=22.44 E-value=1.5e+02 Score=20.41 Aligned_cols=41 Identities=10% Similarity=0.024 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHhCCCceechhhHHHHhhCChHHHHHhhc
Q 032701 73 TAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG 113 (135)
Q Consensus 73 ~aEILelAg~~A~~~~~~rItP~hI~~aI~nD~EL~~L~~~ 113 (135)
..+.++........++...|+-..+...+.+++++..++..
T Consensus 146 ~~~~~~~~f~~~D~d~dG~Is~~Ef~~~~~~~~~~~~~~~~ 186 (204)
T 1jba_A 146 PEEVVDRIFLLVDENGDGQLSLNEFVEGARRDKWVMKMLQM 186 (204)
T ss_dssp HHHHHHHHHHHHCCSCCSCBCHHHHHHHHTTTTTHHHHHHS
T ss_pred HHHHHHHHHHHhCCCCCCeEcHHHHHHHHHcChHHHHHHHh
Confidence 44556666666666778899999999999999999999974
No 80
>2v6z_M DNA polymerase epsilon subunit 2; DNA replication, DPOE2, transferase, AAA protein family; HET: DNA; NMR {Homo sapiens}
Probab=22.21 E-value=92 Score=21.15 Aligned_cols=69 Identities=26% Similarity=0.269 Sum_probs=38.6
Q ss_pred ccccCcccch------hHHHHHHhhccccccccCcchHHHHHHHHHHHH----HHHHHHHHHHHHh--CCCceechhhHH
Q 032701 31 SSRAGLQFPV------GRVHRLLKERAAAHGRVGATAAVYTAAILEYLT----AEVLELAGNASKD--LKVKRITPRHLQ 98 (135)
Q Consensus 31 SsRagL~FPV------srv~r~L~~~~~~~~RIs~~ApVyLaAvLEYL~----aEILelAg~~A~~--~~~~rItP~hI~ 98 (135)
|+-+.||+-+ .+|.+.++-..+ -+...|..||+..|+-+- .+.|+.-...... .....|.-++|+
T Consensus 16 ~~~~~~~~~M~~~rlrk~I~k~FKL~Gl---~Lr~dA~~~L~~~L~~~~~~e~e~~L~~Iid~lqkq~LsS~~Vdk~~VE 92 (99)
T 2v6z_M 16 SSSARLQVDMAPERLRSRALSAFKLRGL---LLRGEAIKYLTEALQSISELELEDKLEKIINAVEKQPLSSNMIERSVVE 92 (99)
T ss_dssp ---------CCHHHHHHHHHHHHHHTTC---EECHHHHHHHHHHTTTSCTTTHHHHHHHHHHHHTTSCCSSSEECHHHHH
T ss_pred ccchhhhhcccHHHHHHHHHHHhhhcce---eecHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcCccccccHHHHH
Confidence 4455677653 345555555444 478899999988776653 3556655554333 346678888998
Q ss_pred HHhh
Q 032701 99 LAIR 102 (135)
Q Consensus 99 ~aI~ 102 (135)
.||.
T Consensus 93 ~AVk 96 (99)
T 2v6z_M 93 AAVQ 96 (99)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8886
No 81
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=20.85 E-value=1e+02 Score=23.30 Aligned_cols=47 Identities=17% Similarity=-0.005 Sum_probs=30.2
Q ss_pred ccCcchHHHHHHHHHH-------HHHHHHHHHHHHHHhCCCceechhhHHHHhh
Q 032701 56 RVGATAAVYTAAILEY-------LTAEVLELAGNASKDLKVKRITPRHLQLAIR 102 (135)
Q Consensus 56 RIs~~ApVyLaAvLEY-------L~aEILelAg~~A~~~~~~rItP~hI~~aI~ 102 (135)
.++..+--||+....- -...++++|...|...++..|+++|+..++.
T Consensus 267 ~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~ 320 (350)
T 1g8p_A 267 EAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVAT 320 (350)
T ss_dssp BCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 4555555555544332 1135566777777777778899999988765
No 82
>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate cyclase activating protein, GCAP1, GCAP-1, calcium, lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus}
Probab=20.84 E-value=1.6e+02 Score=20.15 Aligned_cols=40 Identities=10% Similarity=0.053 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHhCCCceechhhHHHHhhCChHHHHHhhc
Q 032701 74 AEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG 113 (135)
Q Consensus 74 aEILelAg~~A~~~~~~rItP~hI~~aI~nD~EL~~L~~~ 113 (135)
.+.++.+......++...|+...+...+.+++++..++..
T Consensus 130 ~~~~~~~f~~~D~d~dG~I~~~Ef~~~~~~~~~~~~~~~~ 169 (198)
T 2r2i_A 130 EEFTNMVFDKIDINGDGELSLEEFMEGVQKDEVLLDILTR 169 (198)
T ss_dssp HHHHHHHHHHHCTTCSSEECHHHHHHHHTTCHHHHHHHHS
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHcCHHHHHHHhc
Confidence 3445555565656778899999999999999999999873
Done!