AmiGO: BLAST Results


BLAST match view associations BLAST with AT5G54580 AT5G54580 AT5G54580	protein from Arabidopsis thaliana	4.4e-36
BLAST match view associations BLAST with AT2G37510 AT2G37510 AT2G37510	protein from Arabidopsis thaliana	2.9e-23
BLAST match view associations BLAST with AT1G73530 AT1G73530 AT1G73530	protein from Arabidopsis thaliana	3.0e-21
BLAST match view associations BLAST with ORRM1 ORRM1 ORRM1 AT3G20930	protein from Arabidopsis thaliana	3.1e-15
BLAST match view associations BLAST with AT3G46020 AT3G46020 AT3G46020	protein from Arabidopsis thaliana	6.9e-15
BLAST match view associations BLAST with CCR1 CCR1 CCR1 AT4G39260	protein from Arabidopsis thaliana	1.1e-14
BLAST match view associations BLAST with GR-RBP2 GR-RBP2 GR-RBP2 AT4G13850	protein from Arabidopsis thaliana	1.4e-14
BLAST match view associations BLAST with AT5G06210 AT5G06210 AT5G06210	protein from Arabidopsis thaliana	1.8e-14
BLAST match view associations BLAST with GR-RBP3 GR-RBP3 GR-RBP3 AT5G61030	protein from Arabidopsis thaliana	1.9e-14
BLAST match view associations BLAST with GRP4 GRP4 GRP4 AT3G23830	protein from Arabidopsis thaliana	6.2e-14
BLAST match view associations BLAST with AT5G51300 AT5G51300 AT5G51300	protein from Arabidopsis thaliana	8.9e-14
BLAST match view associations BLAST with blt801 blt801 blt801 Glycine-rich RNA-binding protein blt801	protein from Hordeum vulgare	1.0e-13
BLAST match view associations BLAST with GR-RBP6 GR-RBP6 GR-RBP6 AT1G18630	protein from Arabidopsis thaliana	1.6e-13
BLAST match view associations BLAST with GR-RBP5 GR-RBP5 GR-RBP5 AT1G74230	protein from Arabidopsis thaliana	3.2e-13
BLAST match view associations BLAST with ATRZ-1A ATRZ-1A ATRZ-1A AT3G26420	protein from Arabidopsis thaliana	5.6e-13
BLAST match view associations BLAST with NCL NCL NCL Nucleolin	protein from Homo sapiens	6.4e-13
BLAST match view associations BLAST with CG5213 CG5213 CG5213	protein from Drosophila melanogaster	7.1e-13
BLAST match view associations BLAST with LOC100737174 LOC100737174 LOC100737174 Uncharacterized protein	protein from Sus scrofa	1.0e-12
BLAST match view associations BLAST with emb2444 emb2444 emb2444 AT2G18510	protein from Arabidopsis thaliana	1.5e-12
BLAST match view associations BLAST with PABPC4 PABPC4 PABPC4 Polyadenylate-binding protein 4	protein from Homo sapiens	1.9e-12
BLAST match view associations BLAST with RPS19 RPS19 RPS19 AT5G47320	protein from Arabidopsis thaliana	1.9e-12
BLAST match view associations BLAST with GRP7 GRP7 GRP7 AT2G21660	protein from Arabidopsis thaliana	2.4e-12
BLAST match view associations BLAST with zgc:112425 zgc:112425 zgc:112425	gene_product from Danio rerio	2.4e-12
BLAST match view associations BLAST with AT3G08000 AT3G08000 AT3G08000	protein from Arabidopsis thaliana	3.1e-12
BLAST match view associations BLAST with E9PTI5 E9PTI5 E9PTI5 Uncharacterized protein	protein from Rattus norvegicus	3.4e-12
BLAST match view associations BLAST with LOC100737210 LOC100737210 LOC100737210 Uncharacterized protein	protein from Sus scrofa	3.9e-12
BLAST match view associations BLAST with AT4G13860 AT4G13860 AT4G13860	protein from Arabidopsis thaliana	3.9e-12
BLAST match view associations BLAST with Ncl Ncl Ncl nucleolin	protein from Mus musculus	4.9e-12
BLAST match view associations BLAST with NCL NCL NCL Nucleolin	protein from Homo sapiens	4.9e-12
BLAST match view associations BLAST with NCL NCL NCL Nucleolin	protein from Macaca fascicularis	4.9e-12
BLAST match view associations BLAST with NCL NCL NCL Nucleolin	protein from Pongo abelii	4.9e-12
BLAST match view associations BLAST with Ncl Ncl Ncl nucleolin	gene from Rattus norvegicus	4.9e-12
BLAST match view associations BLAST with NCL NCL NCL Nucleolin	protein from Mesocricetus auratus	4.9e-12
BLAST match view associations BLAST with Ncl Ncl Ncl Nucleolin	protein from Rattus norvegicus	4.9e-12
BLAST match view associations BLAST with NCL NCL NCL Uncharacterized protein	protein from Canis lupus familiaris	4.9e-12
BLAST match view associations BLAST with G3MYJ0 G3MYJ0 G3MYJ0 Uncharacterized protein	protein from Bos taurus	5.1e-12
BLAST match view associations BLAST with G3MXT4 G3MXT4 G3MXT4 Uncharacterized protein	protein from Bos taurus	5.2e-12
BLAST match view associations BLAST with G3X7M4 G3X7M4 G3X7M4 Uncharacterized protein	protein from Bos taurus	5.2e-12
BLAST match view associations BLAST with NCL NCL NCL Uncharacterized protein	protein from Bos taurus	6.4e-12
BLAST match view associations BLAST with PABPC4 PABPC4 PABPC4 Uncharacterized protein	protein from Canis lupus familiaris	8.6e-12
BLAST match view associations BLAST with PABPC4 PABPC4 PABPC4 Uncharacterized protein	protein from Canis lupus familiaris	1.0e-11
BLAST match view associations BLAST with cirbp cirbp cirbp Cold-inducible RNA-binding protein	protein from Xenopus (Silurana) tropicalis	1.0e-11
BLAST match view associations BLAST with PABPC4 PABPC4 PABPC4 Uncharacterized protein	protein from Sus scrofa	1.1e-11
BLAST match view associations BLAST with DDB_G0292698 DDB_G0292698 DDB_G0292698 RNA-binding region RNP-1 domain-containing protein	gene from Dictyostelium discoideum	1.1e-11
BLAST match view associations BLAST with PABPC4 PABPC4 PABPC4 PABPC4 protein	protein from Bos taurus	1.5e-11
BLAST match view associations BLAST with sap-49 sap-49 sap-49	gene from Caenorhabditis elegans	1.5e-11
BLAST match view associations BLAST with sap-49 sap-49 sap-49 Splicing factor 3B subunit 4	protein from Caenorhabditis elegans	1.5e-11
BLAST match view associations BLAST with PABPC5 PABPC5 PABPC5 Polyadenylate-binding protein 5	protein from Homo sapiens	1.7e-11
BLAST match view associations BLAST with PABPC4 PABPC4 PABPC4 Polyadenylate-binding protein 4	protein from Homo sapiens	1.8e-11
BLAST match view associations BLAST with Elavl1 Elavl1 Elavl1 ELAV (embryonic lethal, abnormal vision)-like 1 (Hu antigen R)	protein from Mus musculus	2.1e-11
BLAST match view associations BLAST with Elavl1 Elavl1 Elavl1 ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R)	gene from Rattus norvegicus	2.1e-11
BLAST match view associations BLAST with RBM3 RBM3 RBM3 Uncharacterized protein	protein from Sus scrofa	2.2e-11
BLAST match view associations BLAST with AT5G19030 AT5G19030 AT5G19030	protein from Arabidopsis thaliana	2.2e-11
BLAST match view associations BLAST with PABPC4 PABPC4 PABPC4 Polyadenylate-binding protein 4	protein from Homo sapiens	2.2e-11
BLAST match view associations BLAST with PABPC4L PABPC4L PABPC4L Polyadenylate-binding protein 4-like	protein from Homo sapiens	2.3e-11
BLAST match view associations BLAST with PABPC4 PABPC4 PABPC4 Polyadenylate-binding protein 4	protein from Homo sapiens	2.4e-11
BLAST match view associations BLAST with ELAVL1 ELAVL1 ELAVL1 ELAV-like 1 (Hu antigen R)	protein from Sus scrofa	2.7e-11
BLAST match view associations BLAST with Rbm3 Rbm3 Rbm3 RNA binding motif protein 3	protein from Mus musculus	2.8e-11
BLAST match view associations BLAST with AT5G59860 AT5G59860 AT5G59860	protein from Arabidopsis thaliana	2.8e-11
BLAST match view associations BLAST with PABPC4L PABPC4L PABPC4L Polyadenylate-binding protein 4-like	protein from Homo sapiens	3.1e-11
BLAST match view associations BLAST with NCL NCL NCL Nucleolin	protein from Gallus gallus	3.4e-11
BLAST match view associations BLAST with NCL NCL NCL Nucleolin	protein from Gallus gallus	3.4e-11
BLAST match view associations BLAST with NCL NCL NCL Nucleolin	protein from Gallus gallus	3.4e-11
BLAST match view associations BLAST with F6RBQ9 F6RBQ9 F6RBQ9 Uncharacterized protein	protein from Bos taurus	3.5e-11
BLAST match view associations BLAST with RBM3 RBM3 RBM3 Putative RNA-binding protein 3	protein from Homo sapiens	3.5e-11
BLAST match view associations BLAST with ELAVL1 ELAVL1 ELAVL1 ELAV (Embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R)	protein from Bos taurus	4.4e-11
BLAST match view associations BLAST with ELAVL1 ELAVL1 ELAVL1 Uncharacterized protein	protein from Gallus gallus	4.4e-11
BLAST match view associations BLAST with ELAVL1 ELAVL1 ELAVL1 ELAV-like protein 1	protein from Homo sapiens	4.4e-11
BLAST match view associations BLAST with rbm8a rbm8a rbm8a RNA binding motif protein 8A	gene_product from Danio rerio	4.5e-11
BLAST match view associations BLAST with ELAVL1 ELAVL1 ELAVL1 Uncharacterized protein	protein from Canis lupus familiaris	4.8e-11
BLAST match view associations BLAST with ELAVL1 ELAVL1 ELAVL1 ELAV-like protein 1	protein from Homo sapiens	5.5e-11
BLAST match view associations BLAST with ncl ncl ncl nucleolin	gene_product from Danio rerio	5.7e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	5.8e-11
BLAST match view associations BLAST with PABPC5 PABPC5 PABPC5 Uncharacterized protein	protein from Bos taurus	6.7e-11
BLAST match view associations BLAST with cirbp cirbp cirbp Cold-inducible RNA-binding protein	protein from Rana catesbeiana	7.4e-11
BLAST match view associations BLAST with Rbm3 Rbm3 Rbm3 RNA binding motif (RNP1, RRM) protein 3	gene from Rattus norvegicus	7.4e-11
BLAST match view associations BLAST with cirbp cirbp cirbp cold inducible RNA binding protein	gene_product from Danio rerio	7.4e-11
BLAST match view associations BLAST with DDB_G0290307 DDB_G0290307 DDB_G0290307 ELAVL1-like protein	gene from Dictyostelium discoideum	7.6e-11
BLAST match view associations BLAST with AT2G43370 AT2G43370 AT2G43370	protein from Arabidopsis thaliana	7.9e-11
BLAST match view associations BLAST with Pabpc6 Pabpc6 Pabpc6 poly(A) binding protein, cytoplasmic 6	gene from Rattus norvegicus	8.2e-11
BLAST match view associations BLAST with pabpc1A pabpc1A pabpc1A polyadenylate binding protein (PABP)	gene from Dictyostelium discoideum	8.5e-11
BLAST match view associations BLAST with PABPC5 PABPC5 PABPC5 Polyadenylate-binding protein 5	protein from Homo sapiens	8.6e-11
BLAST match view associations BLAST with PABPC5 PABPC5 PABPC5 Uncharacterized protein	protein from Canis lupus familiaris	8.6e-11
BLAST match view associations BLAST with PABPC1 PABPC1 PABPC1 Polyadenylate-binding protein 1	protein from Homo sapiens	9.2e-11
BLAST match view associations BLAST with PABPC1 PABPC1 PABPC1 Uncharacterized protein	protein from Canis lupus familiaris	9.3e-11
BLAST match view associations BLAST with tra2a tra2a tra2a transformer-2 alpha	gene_product from Danio rerio	9.3e-11
BLAST match view associations BLAST with SF3B4 SF3B4 SF3B4 Splicing factor 3b, subunit 4, 49kDa	protein from Homo sapiens	9.4e-11
BLAST match view associations BLAST with MCA1010 MCA1010 MCA1010 RNA-binding protein	protein from Methylococcus capsulatus str. Bath	9.4e-11
BLAST match view associations BLAST with PABPC1 PABPC1 PABPC1 Polyadenylate-binding protein 1	protein from Bos taurus	1.0e-10
BLAST match view associations BLAST with PABPC1 PABPC1 PABPC1 Uncharacterized protein	protein from Canis lupus familiaris	1.0e-10
BLAST match view associations BLAST with PABPC1 PABPC1 PABPC1 Polyadenylate-binding protein 1	protein from Homo sapiens	1.0e-10
BLAST match view associations BLAST with PABPC1 PABPC1 PABPC1 Uncharacterized protein	protein from Sus scrofa	1.0e-10
BLAST match view associations BLAST with PABPC1 PABPC1 PABPC1 Polyadenylate-binding protein 1	protein from Pongo abelii	1.0e-10
Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  032702
        (135 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2172144 - symbol:AT5G54580 species:3702 "Arabi...   389  4.4e-36   1
TAIR|locus:2049816 - symbol:AT2G37510 species:3702 "Arabi...   268  2.9e-23   1
TAIR|locus:2206850 - symbol:AT1G73530 species:3702 "Arabi...   249  3.0e-21   1
TAIR|locus:2088756 - symbol:AT3G20930 species:3702 "Arabi...   197  3.1e-15   1
TAIR|locus:2077137 - symbol:AT3G46020 species:3702 "Arabi...   189  6.9e-15   1
TAIR|locus:2136298 - symbol:CCR1 "cold, circadian rhythm,...   187  1.1e-14   1
TAIR|locus:2119495 - symbol:GR-RBP2 "AT4G13850" species:3...   186  1.4e-14   1
TAIR|locus:2160752 - symbol:AT5G06210 species:3702 "Arabi...   185  1.8e-14   1
TAIR|locus:2159401 - symbol:GR-RBP3 "glycine-rich RNA-bin...   187  1.9e-14   1
TAIR|locus:2076096 - symbol:GRP4 "glycine-rich RNA-bindin...   180  6.2e-14   1
TAIR|locus:2176222 - symbol:AT5G51300 species:3702 "Arabi...   190  8.9e-14   1
UNIPROTKB|Q43472 - symbol:blt801 "Glycine-rich RNA-bindin...   178  1.0e-13   1
TAIR|locus:2027438 - symbol:GR-RBP6 "glycine-rich RNA-bin...   176  1.6e-13   1
TAIR|locus:2019622 - symbol:GR-RBP5 "AT1G74230" species:3...   175  3.2e-13   1
TAIR|locus:2079276 - symbol:ATRZ-1A species:3702 "Arabido...   171  5.6e-13   1
UNIPROTKB|H7BY16 - symbol:NCL "Nucleolin" species:9606 "H...   173  6.4e-13   1
FB|FBgn0038345 - symbol:CG5213 species:7227 "Drosophila m...   170  7.1e-13   1
UNIPROTKB|F1SMV6 - symbol:LOC100737174 "Uncharacterized p...   174  1.0e-12   1
TAIR|locus:2046298 - symbol:emb2444 "embryo defective 244...   158  1.5e-12   2
UNIPROTKB|H0YCC8 - symbol:PABPC4 "Polyadenylate-binding p...   166  1.9e-12   1
TAIR|locus:2171539 - symbol:RPS19 "ribosomal protein S19"...   166  1.9e-12   1
ASPGD|ASPL0000040642 - symbol:AN2989 species:162425 "Emer...   165  2.4e-12   1
TAIR|locus:2049359 - symbol:GRP7 "AT2G21660" species:3702...   165  2.4e-12   1
ZFIN|ZDB-GENE-050417-329 - symbol:zgc:112425 "zgc:112425"...   165  2.4e-12   1
TAIR|locus:2077427 - symbol:AT3G08000 species:3702 "Arabi...   164  3.1e-12   1
UNIPROTKB|E9PTI5 - symbol:E9PTI5 "Uncharacterized protein...   173  3.4e-12   1
UNIPROTKB|I3LRH2 - symbol:LOC100737210 "Uncharacterized p...   174  3.9e-12   1
TAIR|locus:2119505 - symbol:AT4G13860 species:3702 "Arabi...   163  3.9e-12   1
MGI|MGI:97286 - symbol:Ncl "nucleolin" species:10090 "Mus...   173  4.9e-12   1
UNIPROTKB|P19338 - symbol:NCL "Nucleolin" species:9606 "H...   173  4.9e-12   1
UNIPROTKB|Q4R4J7 - symbol:NCL "Nucleolin" species:9541 "M...   173  4.9e-12   1
UNIPROTKB|Q5RF26 - symbol:NCL "Nucleolin" species:9601 "P...   173  4.9e-12   1
RGD|3153 - symbol:Ncl "nucleolin" species:10116 "Rattus n...   173  4.9e-12   1
UNIPROTKB|P08199 - symbol:NCL "Nucleolin" species:10036 "...   173  4.9e-12   1
UNIPROTKB|Q5U328 - symbol:Ncl "Nucleolin, isoform CRA_c" ...   173  4.9e-12   1
UNIPROTKB|F1Q0B0 - symbol:NCL "Uncharacterized protein" s...   173  4.9e-12   1
UNIPROTKB|G3MYJ0 - symbol:G3MYJ0 "Uncharacterized protein...   172  5.1e-12   1
UNIPROTKB|G3MXT4 - symbol:G3MXT4 "Uncharacterized protein...   172  5.2e-12   1
UNIPROTKB|G3X7M4 - symbol:G3X7M4 "Uncharacterized protein...   172  5.2e-12   1
UNIPROTKB|E1B8K6 - symbol:NCL "Uncharacterized protein" s...   172  6.4e-12   1
UNIPROTKB|E2R9I0 - symbol:PABPC4 "Uncharacterized protein...   170  8.6e-12   1
UNIPROTKB|E2R9I1 - symbol:PABPC4 "Uncharacterized protein...   170  1.0e-11   1
UNIPROTKB|Q28IQ9 - symbol:cirbp "Cold-inducible RNA-bindi...   159  1.0e-11   1
UNIPROTKB|F1SV06 - symbol:PABPC4 "Uncharacterized protein...   169  1.1e-11   1
DICTYBASE|DDB_G0292698 - symbol:DDB_G0292698 "RNA-binding...   144  1.1e-11   2
UNIPROTKB|A4IFC3 - symbol:PABPC4 "Uncharacterized protein...   168  1.5e-11   1
WB|WBGene00004723 - symbol:sap-49 species:6239 "Caenorhab...   164  1.5e-11   1
UNIPROTKB|Q09442 - symbol:sap-49 "Splicing factor 3B subu...   164  1.5e-11   1
UNIPROTKB|Q5JQF3 - symbol:PABPC5 "Polyadenylate-binding p...   157  1.7e-11   1
UNIPROTKB|H0Y5F5 - symbol:PABPC4 "Polyadenylate-binding p...   166  1.8e-11   1
MGI|MGI:1100851 - symbol:Elavl1 "ELAV (embryonic lethal, ...   161  2.1e-11   1
RGD|1308649 - symbol:Elavl1 "ELAV (embryonic lethal, abno...   161  2.1e-11   1
UNIPROTKB|I3L5X7 - symbol:RBM3 "Uncharacterized protein" ...   156  2.2e-11   1
TAIR|locus:2179624 - symbol:AT5G19030 species:3702 "Arabi...   156  2.2e-11   1
UNIPROTKB|B1ANR0 - symbol:PABPC4 "Polyadenylate-binding p...   166  2.2e-11   1
POMBASE|SPAC31G5.01 - symbol:sap49 "U2 snRNP-associated R...   161  2.2e-11   1
UNIPROTKB|P0CB38 - symbol:PABPC4L "Polyadenylate-binding ...   162  2.3e-11   1
UNIPROTKB|Q13310 - symbol:PABPC4 "Polyadenylate-binding p...   166  2.4e-11   1
UNIPROTKB|D3K5N7 - symbol:ELAVL1 "ELAV (Embryonic lethal,...   160  2.7e-11   1
MGI|MGI:1099460 - symbol:Rbm3 "RNA binding motif protein ...   155  2.8e-11   1
UNIPROTKB|G3V6P6 - symbol:Rbm3 "Putative RNA-binding prot...   155  2.8e-11   1
TAIR|locus:2168133 - symbol:AT5G59860 species:3702 "Arabi...   155  2.8e-11   1
UNIPROTKB|J3KTH5 - symbol:PABPC4L "Polyadenylate-binding ...   162  3.1e-11   1
UNIPROTKB|F1P336 - symbol:NCL "Nucleolin" species:9031 "G...   165  3.4e-11   1
UNIPROTKB|D4AC21 - symbol:Pabpc4 "Protein Pabpc4" species...   164  3.4e-11   1
UNIPROTKB|F1NU40 - symbol:NCL "Nucleolin" species:9031 "G...   165  3.4e-11   1
UNIPROTKB|P15771 - symbol:NCL "Nucleolin" species:9031 "G...   165  3.4e-11   1
UNIPROTKB|F6RBQ9 - symbol:F6RBQ9 "Uncharacterized protein...   154  3.5e-11   1
UNIPROTKB|P98179 - symbol:RBM3 "Putative RNA-binding prot...   154  3.5e-11   1
UNIPROTKB|D4AC14 - symbol:Pabpc4 "Protein Pabpc4" species...   164  3.8e-11   1
UNIPROTKB|G3V9N0 - symbol:Pabpc4 "RCG31475, isoform CRA_a...   164  4.0e-11   1
UNIPROTKB|Q3ZCE2 - symbol:ELAVL1 "ELAV (Embryonic lethal,...   158  4.4e-11   1
UNIPROTKB|F1N9I5 - symbol:ELAVL1 "Uncharacterized protein...   158  4.4e-11   1
UNIPROTKB|Q15717 - symbol:ELAVL1 "ELAV-like protein 1" sp...   158  4.4e-11   1
ZFIN|ZDB-GENE-050306-51 - symbol:rbm8a "RNA binding motif...   153  4.5e-11   1
UNIPROTKB|F1PSC4 - symbol:ELAVL1 "Uncharacterized protein...   158  4.8e-11   1
UNIPROTKB|B4DVB8 - symbol:ELAVL1 "ELAV-like protein 1" sp...   158  5.5e-11   1
ZFIN|ZDB-GENE-030131-6986 - symbol:ncl "nucleolin" specie...   163  5.7e-11   1
UNIPROTKB|K7ENX8 - symbol:CIRBP "Cold-inducible RNA-bindi...   152  5.8e-11   1
UNIPROTKB|F1N4Q4 - symbol:PABPC5 "Uncharacterized protein...   158  6.7e-11   1
POMBASE|SPAC25G10.01 - symbol:SPAC25G10.01 "RNA-binding p...   155  7.2e-11   1
UNIPROTKB|Q9PTX2 - symbol:cirbp "Cold-inducible RNA-bindi...   151  7.4e-11   1
RGD|620145 - symbol:Rbm3 "RNA binding motif (RNP1, RRM) p...   151  7.4e-11   1
ZFIN|ZDB-GENE-030131-5841 - symbol:cirbp "cold inducible ...   151  7.4e-11   1
DICTYBASE|DDB_G0290307 - symbol:DDB_G0290307 "ELAVL1-like...   159  7.6e-11   1
TAIR|locus:2058141 - symbol:AT2G43370 species:3702 "Arabi...   156  7.9e-11   1
RGD|1311201 - symbol:Pabpc6 "poly(A) binding protein, cyt...   161  8.2e-11   1
DICTYBASE|DDB_G0293558 - symbol:pabpc1A "polyadenylate bi...   160  8.5e-11   1
UNIPROTKB|Q96DU9 - symbol:PABPC5 "Polyadenylate-binding p...   157  8.6e-11   1
UNIPROTKB|F1PQV8 - symbol:PABPC5 "Uncharacterized protein...   157  8.6e-11   1
UNIPROTKB|E7EQV3 - symbol:PABPC1 "Polyadenylate-binding p...   160  9.2e-11   1
UNIPROTKB|E2RQC8 - symbol:PABPC1 "Uncharacterized protein...   160  9.3e-11   1
ZFIN|ZDB-GENE-040426-1391 - symbol:tra2a "transformer-2 a...   154  9.3e-11   1
UNIPROTKB|Q5SZ64 - symbol:SF3B4 "Splicing factor 3B subun...   150  9.4e-11   1
UNIPROTKB|Q60A61 - symbol:MCA1010 "RNA-binding protein" s...   150  9.4e-11   1
UNIPROTKB|P61286 - symbol:PABPC1 "Polyadenylate-binding p...   160  1.0e-10   1
UNIPROTKB|J9P326 - symbol:PABPC1 "Uncharacterized protein...   160  1.0e-10   1
UNIPROTKB|P11940 - symbol:PABPC1 "Polyadenylate-binding p...   160  1.0e-10   1
UNIPROTKB|F2Z557 - symbol:PABPC1 "Uncharacterized protein...   160  1.0e-10   1
UNIPROTKB|Q5R8F7 - symbol:PABPC1 "Polyadenylate-binding p...   160  1.0e-10   1

WARNING:  Descriptions of 1324 database sequences were not reported due to the
          limiting value of parameter V = 100.


>TAIR|locus:2172144 [details] [associations]
            symbol:AT5G54580 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0008150 "biological_process" evidence=ND] [GO:0005739
            "mitochondrion" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
            EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB016879 HOGENOM:HOG000276232
            HSSP:Q61474 UniGene:At.52694 EMBL:AY072101 EMBL:AY096589
            EMBL:AY085234 IPI:IPI00521049 RefSeq:NP_200269.1 UniGene:At.20805
            ProteinModelPortal:Q9FIU6 SMR:Q9FIU6 IntAct:Q9FIU6 PaxDb:Q9FIU6
            PRIDE:Q9FIU6 EnsemblPlants:AT5G54580.1 GeneID:835546
            KEGG:ath:AT5G54580 TAIR:At5g54580 eggNOG:NOG324885
            InParanoid:Q9FIU6 OMA:IKGMDGK PhylomeDB:Q9FIU6
            ProtClustDB:CLSN2696829 ArrayExpress:Q9FIU6 Genevestigator:Q9FIU6
            Uniprot:Q9FIU6
        Length = 156

 Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
 Identities = 85/134 (63%), Positives = 95/134 (70%)

Query:     2 ALRAAVAAPRGLRRLF-STSPFSSSLNP------PQRPQAEPSTNLFVSGLSKRTTDETL 54
             A+    +AP GLRRLF S +   S L+P      P RPQAEPSTNLFVSGLSKRTT E L
Sbjct:    13 AVTEVASAPVGLRRLFCSNASRFSFLSPQAESQTPARPQAEPSTNLFVSGLSKRTTSEGL 72

Query:    55 RDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYA 114
             R  F+ FGEV  AK+V  R SGYSKGFGFV+YATLE + K I GMDGKFLDGWVIF EYA
Sbjct:    73 RTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIAGMDGKFLDGWVIFAEYA 132

Query:   115 KPR-QPPTLPSQNN 127
             +PR Q  +   QNN
Sbjct:   133 RPREQSQSYQPQNN 146


>TAIR|locus:2049816 [details] [associations]
            symbol:AT2G37510 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
            Gene3D:3.30.70.330 EMBL:AC005896 GO:GO:0003676 HOGENOM:HOG000276232
            HSSP:P11940 EMBL:AY084740 EMBL:BT028941 IPI:IPI00545899 PIR:F84793
            RefSeq:NP_181287.1 UniGene:At.37414 ProteinModelPortal:Q8S8L4
            SMR:Q8S8L4 PRIDE:Q8S8L4 EnsemblPlants:AT2G37510.1 GeneID:818327
            KEGG:ath:AT2G37510 TAIR:At2g37510 eggNOG:NOG305672
            InParanoid:Q8S8L4 OMA:NKTIGWC PhylomeDB:Q8S8L4
            ProtClustDB:CLSN2683075 ArrayExpress:Q8S8L4 Genevestigator:Q8S8L4
            Uniprot:Q8S8L4
        Length = 142

 Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
 Identities = 59/110 (53%), Positives = 78/110 (70%)

Query:    14 RRLFSTSPFSSSLNPP----QRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKI 69
             RRL + S  SS L+ P    +R     S  LFVSGLS+ TT+E L+D F++FG++V A++
Sbjct:     8 RRLVAGS--SSLLSSPSLCVRRCSTLTSPRLFVSGLSRLTTNEKLQDAFASFGQLVDARV 65

Query:    70 VKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKPRQP 119
             +  R+SG SKGFGFV YAT+E A KA   M+ KFLDGWVIFV+ A+PR+P
Sbjct:    66 ITDRDSGRSKGFGFVTYATIEDAEKAKAEMNAKFLDGWVIFVDPARPREP 115


>TAIR|locus:2206850 [details] [associations]
            symbol:AT1G73530 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0008150 "biological_process" evidence=ND] [GO:0009507
            "chloroplast" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0009507 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P09651 EMBL:AC012396
            EMBL:BT021981 EMBL:BT028910 IPI:IPI00543837 PIR:A96762
            RefSeq:NP_177494.1 UniGene:At.34984 ProteinModelPortal:Q9FX45
            SMR:Q9FX45 STRING:Q9FX45 PRIDE:Q9FX45 EnsemblPlants:AT1G73530.1
            GeneID:843687 KEGG:ath:AT1G73530 TAIR:At1g73530 eggNOG:NOG302687
            HOGENOM:HOG000152583 InParanoid:Q9FX45 OMA:FRTTEDT PhylomeDB:Q9FX45
            ProtClustDB:CLSN2914346 Genevestigator:Q9FX45 Uniprot:Q9FX45
        Length = 181

 Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 52/94 (55%), Positives = 64/94 (68%)

Query:    24 SSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGF 83
             SS +PP      P T L+VSGLS RTT++TLRDTF  FG ++H  +V  + +   KGF F
Sbjct:    64 SSSSPPSSSSG-PKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAF 122

Query:    84 VKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKPR 117
             ++Y T E A KAI+GM GKFLDG VIFVE AK R
Sbjct:   123 LRYETEEEAMKAIQGMHGKFLDGRVIFVEEAKTR 156


>TAIR|locus:2088756 [details] [associations]
            symbol:AT3G20930 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0008150 "biological_process" evidence=ND] [GO:0000023 "maltose
            metabolic process" evidence=RCA] [GO:0010027 "thylakoid membrane
            organization" evidence=RCA] [GO:0019252 "starch biosynthetic
            process" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002686
            GenomeReviews:BA000014_GR GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 HSSP:Q9V535 eggNOG:COG0724 EMBL:AY099828
            EMBL:AY084565 EMBL:BT002195 IPI:IPI00537313 RefSeq:NP_566672.1
            UniGene:At.43817 ProteinModelPortal:Q8L440 SMR:Q8L440 PRIDE:Q8L440
            EnsemblPlants:AT3G20930.1 GeneID:821642 KEGG:ath:AT3G20930
            TAIR:At3g20930 InParanoid:Q8L440 OMA:KAQMVDH PhylomeDB:Q8L440
            ProtClustDB:CLSN2688611 ArrayExpress:Q8L440 Genevestigator:Q8L440
            Uniprot:Q8L440
        Length = 374

 Score = 197 (74.4 bits), Expect = 3.1e-15, P = 3.1e-15
 Identities = 42/88 (47%), Positives = 61/88 (69%)

Query:    40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
             LF++GLS  T+++TLR  F  FGE+V  KI+  + S  SKG+ F++Y T EAAG A++ M
Sbjct:   284 LFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKEM 343

Query:   100 DGKFLDGWVIFVEYAK--P-RQPPTLPS 124
             +GK ++GW+I V+ AK  P RQ  + PS
Sbjct:   344 NGKIINGWMIVVDVAKTKPFRQNRSQPS 371


>TAIR|locus:2077137 [details] [associations]
            symbol:AT3G46020 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL162459 eggNOG:COG0724
            HOGENOM:HOG000276232 HSSP:Q61474 EMBL:BT012586 EMBL:BT015095
            IPI:IPI00521590 RefSeq:NP_190188.1 UniGene:At.35968
            ProteinModelPortal:Q9LZT1 SMR:Q9LZT1 EnsemblPlants:AT3G46020.1
            GeneID:823745 KEGG:ath:AT3G46020 TAIR:At3g46020 InParanoid:Q9LZT1
            OMA:QIKEARL PhylomeDB:Q9LZT1 ProtClustDB:CLSN2915511
            Genevestigator:Q9LZT1 Uniprot:Q9LZT1
        Length = 102

 Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
 Identities = 37/79 (46%), Positives = 55/79 (69%)

Query:    37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
             S  LFVS LS  TTD++LR  FS FG++  A++++  E+   KGFGF+ + + + A KA+
Sbjct:     6 SAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKAL 65

Query:    97 EGMDGKFLDGWVIFVEYAK 115
             + +DGK +DG +IFVE AK
Sbjct:    66 KSLDGKIVDGRLIFVEVAK 84


>TAIR|locus:2136298 [details] [associations]
            symbol:CCR1 "cold, circadian rhythm, and RNA binding 1"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISM] [GO:0009507 "chloroplast" evidence=IDA]
            [GO:0005730 "nucleolus" evidence=IDA] [GO:0009409 "response to
            cold" evidence=IEP] [GO:0005618 "cell wall" evidence=IDA]
            [GO:0045087 "innate immune response" evidence=IDA] [GO:0005886
            "plasma membrane" evidence=IDA] [GO:0009651 "response to salt
            stress" evidence=IEP] [GO:0005777 "peroxisome" evidence=IDA]
            [GO:0010043 "response to zinc ion" evidence=IEP] [GO:0009737
            "response to abscisic acid stimulus" evidence=IDA] [GO:0005829
            "cytosol" evidence=RCA] [GO:0009506 "plasmodesma" evidence=IDA]
            [GO:0048046 "apoplast" evidence=IDA] [GO:0005794 "Golgi apparatus"
            evidence=IDA] [GO:0007623 "circadian rhythm" evidence=RCA]
            [GO:0000380 "alternative mRNA splicing, via spliceosome"
            evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005886 GO:GO:0009506
            GO:GO:0009737 GO:GO:0005794 GO:GO:0005618 GO:GO:0009507
            EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0005730 GO:GO:0005777
            GO:GO:0000166 GO:GO:0010043 GO:GO:0048046 GO:GO:0009651
            GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0003723
            EMBL:AL161594 eggNOG:COG0724 EMBL:AL050351 GO:GO:0000380
            HOGENOM:HOG000276232 UniGene:At.23968 ProtClustDB:CLSN2913158
            EMBL:Z14988 EMBL:L00649 EMBL:L04171 EMBL:AY034997 EMBL:AY063005
            IPI:IPI00520057 IPI:IPI00526742 PIR:S30148 RefSeq:NP_195637.1
            ProteinModelPortal:Q03251 SMR:Q03251 MINT:MINT-1163792
            STRING:Q03251 PaxDb:Q03251 PRIDE:Q03251 ProMEX:Q03251
            EnsemblPlants:AT4G39260.1 GeneID:830082 KEGG:ath:AT4G39260
            TAIR:At4g39260 InParanoid:Q03251 OMA:GNNSGGY Genevestigator:Q03251
            Uniprot:Q03251
        Length = 169

 Score = 187 (70.9 bits), Expect = 1.1e-14, P = 1.1e-14
 Identities = 42/84 (50%), Positives = 54/84 (64%)

Query:    34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAG 93
             +E     FV GL+  T DE L+ TFS FG+V+ +KI+  RESG S+GFGFV +   +A  
Sbjct:     2 SEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMR 61

Query:    94 KAIEGMDGKFLDGWVIFVEYAKPR 117
              AIE M+GK LDG VI V  A+ R
Sbjct:    62 DAIEEMNGKELDGRVITVNEAQSR 85


>TAIR|locus:2119495 [details] [associations]
            symbol:GR-RBP2 "AT4G13850" species:3702 "Arabidopsis
            thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
            "mitochondrion" evidence=ISM;IDA] [GO:0009409 "response to cold"
            evidence=IGI;IEP;IMP] [GO:0003690 "double-stranded DNA binding"
            evidence=IDA] [GO:0003697 "single-stranded DNA binding"
            evidence=IDA] [GO:0009414 "response to water deprivation"
            evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0001072
            "RNA binding transcription antitermination factor activity"
            evidence=IDA] [GO:0006970 "response to osmotic stress"
            evidence=IMP] [GO:0009631 "cold acclimation" evidence=IMP]
            [GO:0009651 "response to salt stress" evidence=IMP] [GO:0009845
            "seed germination" evidence=IMP] [GO:0031564 "transcription
            antitermination" evidence=IDA] [GO:0005507 "copper ion binding"
            evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=RCA]
            [GO:0006364 "rRNA processing" evidence=RCA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005739 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
            GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0005507 GO:GO:0003723
            GO:GO:0006970 GO:GO:0009845 GO:GO:0003690 GO:GO:0003697
            eggNOG:COG0724 EMBL:AL035528 EMBL:AL161537 HOGENOM:HOG000276232
            EMBL:AJ002892 EMBL:AY072361 EMBL:BT002197 EMBL:AY085621 EMBL:X69377
            EMBL:Z18189 IPI:IPI00527583 PIR:S31443 PIR:T05254
            RefSeq:NP_193121.1 UniGene:At.15585 UniGene:At.2
            ProteinModelPortal:Q9SVM8 SMR:Q9SVM8 IntAct:Q9SVM8 STRING:Q9SVM8
            PaxDb:Q9SVM8 PRIDE:Q9SVM8 ProMEX:Q9SVM8 EnsemblPlants:AT4G13850.1
            GeneID:827019 KEGG:ath:AT4G13850 GeneFarm:3949 TAIR:At4g13850
            InParanoid:Q9SVM8 OMA:ISEMDGK PhylomeDB:Q9SVM8 ProtClustDB:PLN03134
            Genevestigator:Q9SVM8 Uniprot:Q9SVM8
        Length = 158

 Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
 Identities = 44/87 (50%), Positives = 55/87 (63%)

Query:    37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
             ST LF+ GLS  T D +LRD F+ FG+VV AK++  RE+G S+GFGFV +    AA  AI
Sbjct:    34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93

Query:    97 EGMDGKFLDGWVIFVEYAKPRQPPTLP 123
               MDGK L+G  I V  A  R  P+ P
Sbjct:    94 SEMDGKELNGRHIRVNPANDR--PSAP 118


>TAIR|locus:2160752 [details] [associations]
            symbol:AT5G06210 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0008150 "biological_process" evidence=ND] [GO:0009507
            "chloroplast" evidence=ISM] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 eggNOG:COG0724 EMBL:AP002544 HOGENOM:HOG000276232
            HSSP:Q61474 EMBL:AY062714 EMBL:AY093349 EMBL:AY087577
            IPI:IPI00530408 RefSeq:NP_196239.1 UniGene:At.27256
            ProteinModelPortal:Q9FFZ6 SMR:Q9FFZ6 STRING:Q9FFZ6 PaxDb:Q9FFZ6
            PRIDE:Q9FFZ6 EnsemblPlants:AT5G06210.1 GeneID:830508
            KEGG:ath:AT5G06210 TAIR:At5g06210 InParanoid:Q9FFZ6 OMA:SDRSKGF
            PhylomeDB:Q9FFZ6 ProtClustDB:CLSN2686837 ArrayExpress:Q9FFZ6
            Genevestigator:Q9FFZ6 Uniprot:Q9FFZ6
        Length = 146

 Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
 Identities = 47/113 (41%), Positives = 67/113 (59%)

Query:     6 AVAAPRGLRRLFSTSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVV 65
             A  A  G R L S    +SS +     +   ++ LF+ GLS  TT++ L + FS  G+VV
Sbjct:     2 AALARIGGRHLKSVCLINSSASCFFTQRRGVASKLFIGGLSFCTTEQGLSEAFSKCGQVV 61

Query:    66 HAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKPRQ 118
              A+IV  R S  SKGFGFV +A+ + A KA+   +G+ L+G  IFV+YAK +Q
Sbjct:    62 EAQIVMDRVSDRSKGFGFVTFASADEAQKALMEFNGQQLNGRTIFVDYAKAKQ 114


>TAIR|locus:2159401 [details] [associations]
            symbol:GR-RBP3 "glycine-rich RNA-binding protein 3"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005739
            "mitochondrion" evidence=IDA] [GO:0009409 "response to cold"
            evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0005507
            "copper ion binding" evidence=IDA] [GO:0006626 "protein targeting
            to mitochondrion" evidence=RCA] [GO:0009220 "pyrimidine
            ribonucleotide biosynthetic process" evidence=RCA] [GO:0009909
            "regulation of flower development" evidence=RCA] [GO:0010228
            "vegetative to reproductive phase transition of meristem"
            evidence=RCA] [GO:0034968 "histone lysine methylation"
            evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005739 GO:GO:0005524
            EMBL:CP002688 GenomeReviews:BA000015_GR Gene3D:3.30.70.330
            GO:GO:0003676 GO:GO:0005507 EMBL:AB006696 eggNOG:COG0724
            HSSP:Q14103 KO:K12741 EMBL:AY060565 EMBL:AY125548 EMBL:AB493804
            IPI:IPI00542729 RefSeq:NP_200911.1 UniGene:At.24064
            ProteinModelPortal:Q9FNR1 SMR:Q9FNR1 STRING:Q9FNR1 PaxDb:Q9FNR1
            PRIDE:Q9FNR1 EnsemblPlants:AT5G61030.1 GeneID:836224
            KEGG:ath:AT5G61030 GeneFarm:3953 TAIR:At5g61030
            HOGENOM:HOG000029199 InParanoid:Q9FNR1 OMA:YANDRTS
            ProtClustDB:CLSN2916423 Genevestigator:Q9FNR1 Uniprot:Q9FNR1
        Length = 309

 Score = 187 (70.9 bits), Expect = 1.9e-14, P = 1.9e-14
 Identities = 39/96 (40%), Positives = 61/96 (63%)

Query:    25 SLNPPQRPQA---EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGF 81
             SL+ P   QA     S+ LF+ G++    +++LR+ F+ +GEVV  +++  RE+G S+GF
Sbjct:    24 SLSSPSLFQAIRCMSSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGF 83

Query:    82 GFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKPR 117
             GFV + + EAA  AI+ +DG+ L G V+ V YA  R
Sbjct:    84 GFVTFTSSEAASSAIQALDGRDLHGRVVKVNYANDR 119


>TAIR|locus:2076096 [details] [associations]
            symbol:GRP4 "glycine-rich RNA-binding protein 4"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS;IDA]
            [GO:0005739 "mitochondrion" evidence=IDA] [GO:0003690
            "double-stranded DNA binding" evidence=IDA] [GO:0003697
            "single-stranded DNA binding" evidence=IDA] [GO:0006970 "response
            to osmotic stress" evidence=IMP] [GO:0009409 "response to cold"
            evidence=IEP] [GO:0009414 "response to water deprivation"
            evidence=IEP] [GO:0009651 "response to salt stress" evidence=IMP]
            [GO:0006364 "rRNA processing" evidence=RCA] [GO:0009664 "plant-type
            cell wall organization" evidence=RCA] [GO:0042545 "cell wall
            modification" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
            EMBL:CP002686 GO:GO:0000166 GO:GO:0009651 Gene3D:3.30.70.330
            GO:GO:0003723 GO:GO:0003690 GO:GO:0003697 EMBL:AP001297
            eggNOG:COG0724 HOGENOM:HOG000276232 HSSP:Q14103
            ProtClustDB:PLN03134 EMBL:AY070755 EMBL:AY097374 EMBL:AY085838
            IPI:IPI00523873 RefSeq:NP_189025.1 RefSeq:NP_850629.1
            UniGene:At.8272 ProteinModelPortal:Q9LIS2 SMR:Q9LIS2 STRING:Q9LIS2
            PaxDb:Q8LDS0 PRIDE:Q9LIS2 EnsemblPlants:AT3G23830.1
            EnsemblPlants:AT3G23830.2 GeneID:821966 KEGG:ath:AT3G23830
            GeneFarm:3951 TAIR:At3g23830 InParanoid:Q9LIS2 OMA:CEDSANN
            PhylomeDB:Q9LIS2 Genevestigator:Q9LIS2 Uniprot:Q9LIS2
        Length = 136

 Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
 Identities = 38/81 (46%), Positives = 53/81 (65%)

Query:    37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
             S+ LFV GLS  T D +L+  F++FGEV  A ++  RE+G S+GFGFV ++  ++A  AI
Sbjct:    34 SSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 93

Query:    97 EGMDGKFLDGWVIFVEYAKPR 117
             + MDGK L+G  I V  A  R
Sbjct:    94 KEMDGKELNGRQIRVNLATER 114


>TAIR|locus:2176222 [details] [associations]
            symbol:AT5G51300 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
            evidence=IEA] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0000398
            "mRNA splicing, via spliceosome" evidence=RCA] InterPro:IPR000504
            InterPro:IPR001878 InterPro:IPR004087 InterPro:IPR004088
            InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
            PROSITE:PS50102 PROSITE:PS50158 SMART:SM00322 SMART:SM00343
            SMART:SM00360 EMBL:CP002688 GO:GO:0008380 GO:GO:0000166
            GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:4.10.60.10
            SUPFAM:SSF57756 HSSP:Q9BW01 KO:K13095 EMBL:AB023044 OMA:GDGPSHE
            EMBL:AY142629 EMBL:AK316802 EMBL:AK317057 IPI:IPI00537668
            RefSeq:NP_001032055.1 RefSeq:NP_199943.1 RefSeq:NP_851169.1
            UniGene:At.22924 ProteinModelPortal:Q9LU44 SMR:Q9LU44 IntAct:Q9LU44
            STRING:Q9LU44 PRIDE:Q9LU44 EnsemblPlants:AT5G51300.1
            EnsemblPlants:AT5G51300.2 EnsemblPlants:AT5G51300.3 GeneID:835204
            KEGG:ath:AT5G51300 TAIR:At5g51300 InParanoid:Q9LU44
            PhylomeDB:Q9LU44 ProtClustDB:CLSN2687224 Genevestigator:Q9LU44
            Uniprot:Q9LU44
        Length = 804

 Score = 190 (71.9 bits), Expect = 8.9e-14, P = 8.9e-14
 Identities = 40/101 (39%), Positives = 59/101 (58%)

Query:    23 SSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFG 82
             S+   PP +   E  TNL++  L     D+ L + FS+FGE+V AK++K R +G SKG+G
Sbjct:   467 STPTKPPSKEYDE--TNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYG 524

Query:    83 FVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKPRQPPTLP 123
             FVKYA ++ A  A++ M+G   +G  + V  A    PP  P
Sbjct:   525 FVKYADVQMANTAVQAMNGYRFEGRTLAVRIAGKSPPPIAP 565


>UNIPROTKB|Q43472 [details] [associations]
            symbol:blt801 "Glycine-rich RNA-binding protein blt801"
            species:4513 "Hordeum vulgare" [GO:0003697 "single-stranded DNA
            binding" evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA]
            [GO:0009409 "response to cold" evidence=IDA] [GO:0009737 "response
            to abscisic acid stimulus" evidence=IDA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0009737 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0003697
            EMBL:U49482 PIR:S71453 HSSP:P11940 ProteinModelPortal:Q43472
            Gramene:Q43472 Genevestigator:Q43472 Uniprot:Q43472
        Length = 161

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 38/85 (44%), Positives = 57/85 (67%)

Query:    34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAG 93
             A+     FV GL   T D++L++ FS +G+V+ +KI+  RE+G S+GFGFV +A+ EA  
Sbjct:     2 ADVEYRCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMR 61

Query:    94 KAIEGMDGKFLDGWVIFVEYAKPRQ 118
             +AIE M+G+ LDG  I V  A+ R+
Sbjct:    62 QAIEAMNGQDLDGRNITVNEAQSRR 86


>TAIR|locus:2027438 [details] [associations]
            symbol:GR-RBP6 "glycine-rich RNA-binding protein 6"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISM] [GO:0009651 "response to salt stress"
            evidence=IEP] [GO:0005768 "endosome" evidence=IDA] [GO:0005794
            "Golgi apparatus" evidence=IDA] [GO:0005802 "trans-Golgi network"
            evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 EMBL:CP002684 GO:GO:0005794
            GO:GO:0000166 GO:GO:0005768 Gene3D:3.30.70.330 GO:GO:0003676
            GO:GO:0005802 HSSP:P09651 EMBL:AC026238 EMBL:BT005999 EMBL:AK227482
            EMBL:AY085358 IPI:IPI00537929 PIR:A86320 RefSeq:NP_173298.1
            UniGene:At.356 UniGene:At.41785 ProteinModelPortal:Q9FZ84
            SMR:Q9FZ84 IntAct:Q9FZ84 PaxDb:Q8LEL7 PRIDE:Q9FZ84
            EnsemblPlants:AT1G18630.1 GeneID:838444 KEGG:ath:AT1G18630
            GeneFarm:3974 TAIR:At1g18630 eggNOG:NOG255734 InParanoid:Q9FZ84
            OMA:IFRQPRA PhylomeDB:Q9FZ84 ProtClustDB:CLSN2914186
            Genevestigator:Q9FZ84 Uniprot:Q9FZ84
        Length = 155

 Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
 Identities = 38/79 (48%), Positives = 51/79 (64%)

Query:    36 PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKA 95
             PS  +FV GLS  T  E L++ F +FG++V A +V  RESG S+GFGFV Y ++E A  A
Sbjct:    35 PS-KIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNA 93

Query:    96 IEGMDGKFLDGWVIFVEYA 114
             ++ M  K LDG +I V  A
Sbjct:    94 MQAMQNKELDGRIIGVHPA 112


>TAIR|locus:2019622 [details] [associations]
            symbol:GR-RBP5 "AT1G74230" species:3702 "Arabidopsis
            thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0005524
            "ATP binding" evidence=IDA] [GO:0005507 "copper ion binding"
            evidence=IDA] [GO:0010228 "vegetative to reproductive phase
            transition of meristem" evidence=RCA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0005524
            Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005507 eggNOG:COG0724
            EMBL:AC020579 HSSP:Q14103 KO:K12741 EMBL:BT002037 EMBL:BT006315
            IPI:IPI00516639 PIR:F96770 RefSeq:NP_177563.1 UniGene:At.18152
            ProteinModelPortal:Q9C909 SMR:Q9C909 PaxDb:Q9C909 PRIDE:Q9C909
            EnsemblPlants:AT1G74230.1 GeneID:843763 KEGG:ath:AT1G74230
            GeneFarm:3954 TAIR:At1g74230 InParanoid:Q9C909 OMA:TERGSGF
            ProtClustDB:CLSN2914559 Genevestigator:Q9C909 Uniprot:Q9C909
        Length = 289

 Score = 175 (66.7 bits), Expect = 3.2e-13, P = 3.2e-13
 Identities = 44/105 (41%), Positives = 64/105 (60%)

Query:    15 RLFS--TSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKH 72
             RLFS  +S  ++S +  Q  +   S+ +FV G+S  T +  LR+ FS +GEVV AKI+  
Sbjct:     9 RLFSQTSSHVTASSSMLQSIRCMSSSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVD 68

Query:    73 RESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKPR 117
             RE+G S+GF FV + + E A  A++ +DG+ L G  I V YA  R
Sbjct:    69 RETGRSRGFAFVTFTSTEEASNAMQ-LDGQDLHGRRIRVNYATER 112


>TAIR|locus:2079276 [details] [associations]
            symbol:ATRZ-1A species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA;IDA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0009409 "response to cold" evidence=IMP] [GO:0009631 "cold
            acclimation" evidence=IGI] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829 "cytosol"
            evidence=IDA] InterPro:IPR000504 InterPro:IPR001878
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
            PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0005829
            GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
            GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0009631
            GO:GO:0003676 Gene3D:4.10.60.10 EMBL:AP001298 HOGENOM:HOG000276232
            UniGene:At.48707 HSSP:Q61474 KO:K12885 EMBL:AY054613 EMBL:AF424613
            EMBL:AY072457 EMBL:AK221725 EMBL:AK227088 IPI:IPI00530350
            RefSeq:NP_189273.1 ProteinModelPortal:Q9LIN3 SMR:Q9LIN3
            IntAct:Q9LIN3 STRING:Q9LIN3 PRIDE:Q9LIN3 EnsemblPlants:AT3G26420.1
            GeneID:822246 KEGG:ath:AT3G26420 TAIR:At3g26420 InParanoid:Q9LIN3
            OMA:SSKDDRY PhylomeDB:Q9LIN3 ProtClustDB:CLSN2723027
            Genevestigator:Q9LIN3 Uniprot:Q9LIN3
        Length = 245

 Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
 Identities = 35/84 (41%), Positives = 51/84 (60%)

Query:    35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGK 94
             +P    F+ GL+  T+D  LRD F  +G +V AK+V  + SG S+GFGF+ +   +A  +
Sbjct:     4 DPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDE 63

Query:    95 AIEGMDGKFLDGWVIFVEYAKPRQ 118
             AI  M+G  LDG  I V+ A+P Q
Sbjct:    64 AIAAMNGMDLDGRTITVDKAQPHQ 87


>UNIPROTKB|H7BY16 [details] [associations]
            symbol:NCL "Nucleolin" species:9606 "Homo sapiens"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC017104 HGNC:HGNC:7667
            ChiTaRS:NCL ProteinModelPortal:H7BY16 PRIDE:H7BY16
            Ensembl:ENST00000356936 Bgee:H7BY16 Uniprot:H7BY16
        Length = 297

 Score = 173 (66.0 bits), Expect = 6.4e-13, P = 6.4e-13
 Identities = 39/85 (45%), Positives = 58/85 (68%)

Query:    33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
             +++PS  LFV GLS+ TT+ETL+++F   G V  A+IV  RE+G SKGFGFV + + E A
Sbjct:   192 RSQPSKTLFVKGLSEDTTEETLKESFD--GSV-RARIVTDRETGSSKGFGFVDFNSEEDA 248

Query:    93 GKAIEGMDGKFLDGWVIFVEYAKPR 117
               A E M+   +DG  + +++AKP+
Sbjct:   249 KAAKEAMEDGEIDGNKVTLDWAKPK 273

 Score = 117 (46.2 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 31/98 (31%), Positives = 54/98 (55%)

Query:    37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
             S  L +S LS   T+ETL++ F    +    K+ ++ ++G SKG+ F+++A+ E A +A+
Sbjct:   110 SKTLVLSNLSYSATEETLQEVFE---KATFIKVPQN-QNGKSKGYAFIEFASFEDAKEAL 165

Query:    97 EGMDGKFLDGWVIFVEYAKPRQPPTLPSQ-NNTNFQYG 133
                + + ++G  I +E   PR  P   SQ + T F  G
Sbjct:   166 NSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKG 203


>FB|FBgn0038345 [details] [associations]
            symbol:CG5213 species:7227 "Drosophila melanogaster"
            [GO:0003729 "mRNA binding" evidence=ISS] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
            PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0022008
            GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 HSSP:P19339
            GeneTree:ENSGT00560000077064 EMBL:AY089405 RefSeq:NP_650473.1
            UniGene:Dm.5039 SMR:Q9VF55 STRING:Q9VF55 EnsemblMetazoa:FBtr0083148
            GeneID:41892 KEGG:dme:Dmel_CG5213 UCSC:CG5213-RA
            FlyBase:FBgn0038345 eggNOG:NOG294033 InParanoid:Q9VF55 OMA:RRERTND
            OrthoDB:EOG4DNCM8 GenomeRNAi:41892 NextBio:826136 Uniprot:Q9VF55
        Length = 251

 Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
 Identities = 40/108 (37%), Positives = 57/108 (52%)

Query:    12 GLRRLFSTS-PFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIV 70
             G+R +F T  P      PP  P     TNL ++ L +  T+  L   FS FGE+  AKI+
Sbjct:    17 GIRGMFQTGRPVDP---PPPLPNLRMKTNLILNYLPQDMTESELHRLFSKFGEIRKAKII 73

Query:    71 KHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKPRQ 118
             +HR +G S  +GFV Y +   A  A+ GMDG    G  + V +A+P +
Sbjct:    74 RHRRTGISCCYGFVDYVSERQAAAAVNGMDGYETRGKRLKVAFARPSE 121

 Score = 99 (39.9 bits), Expect = 8.3e-05, P = 8.3e-05
 Identities = 21/78 (26%), Positives = 42/78 (53%)

Query:    31 RPQAEPSTN--LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYAT 88
             RP    ST+  L+V  L     ++ +R+ F+ +G +V   +++H+ +  S+G  F+++  
Sbjct:   118 RPSEYESTSSSLYVGNLPTYMDEKKVRELFATYGNIVDVNLLRHKFNNRSRGVAFLQFEL 177

Query:    89 LEAAGKAIEGMDGKFLDG 106
             +  A  A  GMD   ++G
Sbjct:   178 VRDAEVAKYGMDRYMIEG 195


>UNIPROTKB|F1SMV6 [details] [associations]
            symbol:LOC100737174 "Uncharacterized protein" species:9823
            "Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00550000074656 EMBL:CU856676
            Ensembl:ENSSSCT00000017723 Uniprot:F1SMV6
        Length = 365

 Score = 174 (66.3 bits), Expect = 1.0e-12, P = 1.0e-12
 Identities = 38/85 (44%), Positives = 58/85 (68%)

Query:    33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
             +++PS  LFV GLS+ TT+ETL+++F   G +  A+IV  RE+G SKGFGFV + + E A
Sbjct:   221 RSQPSKTLFVKGLSEETTEETLKESFD--GSI-RARIVTDRETGSSKGFGFVDFNSEEDA 277

Query:    93 GKAIEGMDGKFLDGWVIFVEYAKPR 117
               A E M+   +DG  + +++AKP+
Sbjct:   278 KAAKEAMEDGEIDGNKVTLDWAKPK 302

 Score = 114 (45.2 bits), Expect = 3.9e-06, P = 3.9e-06
 Identities = 30/98 (30%), Positives = 54/98 (55%)

Query:    37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
             S  L +S L+   T+ETL++ F    +    K+ ++ ++G SKG+ F+++A+ E A +A+
Sbjct:   139 SKTLVLSNLAYSATEETLQEVFE---KATFIKVPQN-QNGKSKGYAFIEFASFEDAKEAL 194

Query:    97 EGMDGKFLDGWVIFVEYAKPRQPPTLPSQ-NNTNFQYG 133
                + + ++G  I +E   PR  P   SQ + T F  G
Sbjct:   195 NSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKG 232


>TAIR|locus:2046298 [details] [associations]
            symbol:emb2444 "embryo defective 2444" species:3702
            "Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
            evidence=ISM] [GO:0009793 "embryo development ending in seed
            dormancy" evidence=NAS] [GO:0005730 "nucleolus" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 EMBL:CP002685 GO:GO:0005730 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC006135 HSSP:P11940
            KO:K12831 EMBL:AY150466 IPI:IPI00516901 PIR:B84565
            RefSeq:NP_179441.1 UniGene:At.20306 ProteinModelPortal:Q9ZU66
            SMR:Q9ZU66 STRING:Q9ZU66 PRIDE:Q9ZU66 EnsemblPlants:AT2G18510.1
            GeneID:816366 KEGG:ath:AT2G18510 TAIR:At2g18510 InParanoid:Q9ZU66
            OMA:FIEYRSE PhylomeDB:Q9ZU66 ProtClustDB:CLSN2683050
            Genevestigator:Q9ZU66 Uniprot:Q9ZU66
        Length = 363

 Score = 158 (60.7 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
 Identities = 33/77 (42%), Positives = 48/77 (62%)

Query:    39 NLFVSGLSKRTTDETLRDTFSAFGEVV-HAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
             NLF+  L     ++ L DTFSAFG +  + KI++  ++G S+GFGF+ Y + EA+  AIE
Sbjct:   113 NLFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIE 172

Query:    98 GMDGKFLDGWVIFVEYA 114
              M G++L    I V YA
Sbjct:   173 SMTGQYLSNRQITVSYA 189

 Score = 34 (17.0 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query:   118 QPPTLPSQ 125
             QPP+ PSQ
Sbjct:   268 QPPSWPSQ 275


>UNIPROTKB|H0YCC8 [details] [associations]
            symbol:PABPC4 "Polyadenylate-binding protein 4"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
            Ensembl:ENST00000474378 Uniprot:H0YCC8
        Length = 197

 Score = 166 (63.5 bits), Expect = 1.9e-12, P = 1.9e-12
 Identities = 33/85 (38%), Positives = 54/85 (63%)

Query:    33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
             +A+  TN+++    +   DE+L++ FS FG+ +  K+++   +G SKGFGFV Y   E A
Sbjct:    99 KAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHEDA 157

Query:    93 GKAIEGMDGKFLDGWVIFVEYAKPR 117
              KA+E M+GK + G +IFV  A+ +
Sbjct:   158 NKAVEEMNGKEISGKIIFVGRAQKK 182


>TAIR|locus:2171539 [details] [associations]
            symbol:RPS19 "ribosomal protein S19" species:3702
            "Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003735 "structural
            constituent of ribosome" evidence=IEA] [GO:0005739 "mitochondrion"
            evidence=ISM] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
            "translation" evidence=IEA;NAS] [GO:0015935 "small ribosomal
            subunit" evidence=IEA] [GO:0006354 "DNA-dependent transcription,
            elongation" evidence=RCA] [GO:0005763 "mitochondrial small
            ribosomal subunit" evidence=IDA] InterPro:IPR000504
            InterPro:IPR002222 InterPro:IPR005732 InterPro:IPR012677
            InterPro:IPR020934 InterPro:IPR023575 Pfam:PF00076 Pfam:PF00203
            PRINTS:PR00975 PROSITE:PS00323 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166 GO:GO:0006412
            Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003735 eggNOG:COG0724
            GO:GO:0005763 EMBL:AB018117 Gene3D:3.30.860.10 HAMAP:MF_00531
            SUPFAM:SSF54570 TIGRFAMs:TIGR01050 KO:K02965 EMBL:X78035
            EMBL:X77989 EMBL:AY045963 EMBL:AY091354 EMBL:Z18203 IPI:IPI00544075
            PIR:S71114 RefSeq:NP_568681.1 UniGene:At.5396
            ProteinModelPortal:P39697 SMR:P39697 STRING:P39697 PaxDb:P39697
            PRIDE:P39697 EnsemblPlants:AT5G47320.1 GeneID:834779
            KEGG:ath:AT5G47320 GeneFarm:3993 TAIR:At5g47320 InParanoid:P39697
            PhylomeDB:P39697 Genevestigator:P39697 GermOnline:AT5G47320
            Uniprot:P39697
        Length = 212

 Score = 166 (63.5 bits), Expect = 1.9e-12, P = 1.9e-12
 Identities = 34/87 (39%), Positives = 57/87 (65%)

Query:    37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
             ST L++ GLS  T + +L+D FS+F  V  A+++ ++ +G S+G+GFV + + ++A  AI
Sbjct:    30 STKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAI 89

Query:    97 EGMDGKFLDGWVIFVEYAKPRQPPTLP 123
               M+G+ L+G+ I V  AK    P+LP
Sbjct:    90 SAMNGQELNGFNISVNVAKDW--PSLP 114


>ASPGD|ASPL0000040642 [details] [associations]
            symbol:AN2989 species:162425 "Emericella nidulans"
            [GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306
            GO:GO:0003676 HOGENOM:HOG000276232 OMA:ISEMDGK
            ProteinModelPortal:C8VIY5 EnsemblFungi:CADANIAT00010091
            Uniprot:C8VIY5
        Length = 128

 Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 38/95 (40%), Positives = 57/95 (60%)

Query:    40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
             LF+ GL+  TTD+ LR+ FS +G +  A +VK R++  S+GFGFV++A+   A  A+  M
Sbjct:     4 LFIGGLAWHTTDDVLREGFSRYGTIEEAVVVKDRDTNRSRGFGFVRFASEPEADAAMGAM 63

Query:   100 DGKFLDGWVIFVEYAKPRQPPTLPSQNNTNFQYGR 134
             + +  DG +I V+ A  R     P+  N  FQ GR
Sbjct:    64 NNQEFDGRIIRVDKASER-----PAARNGGFQ-GR 92


>TAIR|locus:2049359 [details] [associations]
            symbol:GRP7 "AT2G21660" species:3702 "Arabidopsis
            thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
            "mitochondrion" evidence=ISM] [GO:0005634 "nucleus"
            evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0003690
            "double-stranded DNA binding" evidence=IDA] [GO:0003697
            "single-stranded DNA binding" evidence=IDA] [GO:0009409 "response
            to cold" evidence=IGI;IEP] [GO:0009414 "response to water
            deprivation" evidence=IEP] [GO:0009651 "response to salt stress"
            evidence=IEP;RCA] [GO:0046686 "response to cadmium ion"
            evidence=IEP;RCA] [GO:0010501 "RNA secondary structure unwinding"
            evidence=IDA] [GO:0032508 "DNA duplex unwinding" evidence=IDA]
            [GO:0045087 "innate immune response" evidence=IMP;IDA] [GO:0005777
            "peroxisome" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
            evidence=IMP] [GO:0006970 "response to osmotic stress"
            evidence=IMP] [GO:0010119 "regulation of stomatal movement"
            evidence=IMP] [GO:0009507 "chloroplast" evidence=IDA] [GO:0010228
            "vegetative to reproductive phase transition of meristem"
            evidence=RCA;IMP] [GO:0010043 "response to zinc ion" evidence=IEP]
            [GO:0005829 "cytosol" evidence=IDA] [GO:0009506 "plasmodesma"
            evidence=IDA] [GO:0048046 "apoplast" evidence=IDA] [GO:0006094
            "gluconeogenesis" evidence=RCA] [GO:0006096 "glycolysis"
            evidence=RCA] [GO:0006833 "water transport" evidence=RCA]
            [GO:0006972 "hyperosmotic response" evidence=RCA] [GO:0007030
            "Golgi organization" evidence=RCA] [GO:0007623 "circadian rhythm"
            evidence=IEP;RCA;TAS] [GO:0009266 "response to temperature
            stimulus" evidence=RCA] [GO:0000380 "alternative mRNA splicing, via
            spliceosome" evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005829 GO:GO:0009506 GO:GO:0005634
            GO:GO:0009507 GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR
            GO:GO:0005777 GO:GO:0010119 GO:GO:0000166 GO:GO:0010043
            GO:GO:0048046 GO:GO:0007623 GO:GO:0009651 GO:GO:0009409
            GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0003690
            GO:GO:0003697 GO:GO:0006406 GO:GO:0010228 eggNOG:COG0724
            GO:GO:0000380 HOGENOM:HOG000276232 GO:GO:0010501 GO:GO:0032508
            EMBL:AC007119 UniGene:At.22672 UniGene:At.23628 EMBL:Z14987
            EMBL:L00648 EMBL:L04172 EMBL:AF428381 EMBL:AY054284 EMBL:AY042826
            EMBL:AY072523 EMBL:AK318968 EMBL:AY085214 IPI:IPI00523161
            IPI:IPI00542675 PIR:S30147 RefSeq:NP_179760.1 UniGene:At.24279
            UniGene:At.72988 ProteinModelPortal:Q03250 SMR:Q03250 IntAct:Q03250
            MINT:MINT-1163877 STRING:Q03250 PaxDb:Q03250 PRIDE:Q03250
            ProMEX:Q03250 EnsemblPlants:AT2G21660.1 GeneID:816705
            KEGG:ath:AT2G21660 TAIR:At2g21660 InParanoid:Q03250 OMA:SQHEDGH
            ProtClustDB:CLSN2913158 Genevestigator:Q03250 Uniprot:Q03250
        Length = 176

 Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 35/77 (45%), Positives = 49/77 (63%)

Query:    41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100
             FV GL+  T D  L   F+ +G+V+ +KI+  RE+G S+GFGFV +   +A   AIEGM+
Sbjct:    11 FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMN 70

Query:   101 GKFLDGWVIFVEYAKPR 117
             G+ LDG  I V  A+ R
Sbjct:    71 GQDLDGRSITVNEAQSR 87


>ZFIN|ZDB-GENE-050417-329 [details] [associations]
            symbol:zgc:112425 "zgc:112425" species:7955 "Danio
            rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0005575
            "cellular_component" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            ZFIN:ZDB-GENE-050417-329 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG107480 KO:K13195
            HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309
            OMA:GNNSGGY EMBL:CABZ01088879 EMBL:CABZ01088880 EMBL:BC093299
            EMBL:BC095030 IPI:IPI00570286 RefSeq:NP_001017797.1
            UniGene:Dr.75965 SMR:Q566W6 STRING:Q566W6
            Ensembl:ENSDART00000093068 Ensembl:ENSDART00000113350 GeneID:550495
            KEGG:dre:550495 NextBio:20879737 Uniprot:Q566W6
        Length = 185

 Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 32/75 (42%), Positives = 50/75 (66%)

Query:    40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
             LF+ GLS  TT+++L D FS +G + +  + ++RE+  S+GFGFV +   + A  A+EGM
Sbjct:     7 LFIGGLSFDTTEQSLEDAFSKYGVITNVHVARNRETNRSRGFGFVTFENPDDAKDALEGM 66

Query:   100 DGKFLDGWVIFVEYA 114
             +GK +DG  I V+ A
Sbjct:    67 NGKSVDGRTIRVDEA 81


>TAIR|locus:2077427 [details] [associations]
            symbol:AT3G08000 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC013483 eggNOG:COG0724
            HOGENOM:HOG000276232 HSSP:Q14103 UniGene:At.40270 UniGene:At.28103
            EMBL:BT012118 EMBL:BT012373 IPI:IPI00520412 RefSeq:NP_187457.1
            ProteinModelPortal:Q9SFB4 SMR:Q9SFB4 EnsemblPlants:AT3G08000.1
            GeneID:819991 KEGG:ath:AT3G08000 TAIR:At3g08000 InParanoid:Q9SFB4
            OMA:FCTSSSA PhylomeDB:Q9SFB4 ProtClustDB:CLSN2915579
            Genevestigator:Q9SFB4 Uniprot:Q9SFB4
        Length = 143

 Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
 Identities = 36/84 (42%), Positives = 51/84 (60%)

Query:    34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAG 93
             A PS+ LF+ GLS    +++L+D FS+FGEV   +I   + SG S+GFGFV +A    A 
Sbjct:    37 ASPSSKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDAL 96

Query:    94 KAIEGMDGKFLDGWVIFVEYAKPR 117
              A + MDGK L G  + + +A  R
Sbjct:    97 SAKDAMDGKGLLGRPLRISFALER 120


>UNIPROTKB|E9PTI5 [details] [associations]
            symbol:E9PTI5 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00550000074656 IPI:IPI01007589
            Ensembl:ENSRNOT00000011480 Uniprot:E9PTI5
        Length = 567

 Score = 173 (66.0 bits), Expect = 3.4e-12, P = 3.4e-12
 Identities = 39/85 (45%), Positives = 58/85 (68%)

Query:    33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
             +++PS  LFV GLS+ TT+ETL+++F   G V  A+IV  RE+G SKGFGFV + + E A
Sbjct:   424 RSQPSKTLFVKGLSEDTTEETLKESFE--GSV-RARIVTDRETGSSKGFGFVDFNSEEDA 480

Query:    93 GKAIEGMDGKFLDGWVIFVEYAKPR 117
               A E M+   +DG  + +++AKP+
Sbjct:   481 KTAKEAMEDGEIDGNKVTLDWAKPK 505

 Score = 109 (43.4 bits), Expect = 2.6e-05, P = 2.6e-05
 Identities = 31/98 (31%), Positives = 51/98 (52%)

Query:    37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
             S  L +S LS   T+ETL++ F    +    K+ ++   G SKG+ F+++A+ E A +A+
Sbjct:   342 SKTLVLSNLSYSATEETLQEVFE---KATFIKVPQNPH-GKSKGYAFIEFASFEDAKEAL 397

Query:    97 EGMDGKFLDGWVIFVEYAKPRQPPTLPSQ-NNTNFQYG 133
                +   ++G  I +E   PR  P   SQ + T F  G
Sbjct:   398 NSCNKMEIEGRTIRLELQGPRGSPNARSQPSKTLFVKG 435


>UNIPROTKB|I3LRH2 [details] [associations]
            symbol:LOC100737210 "Uncharacterized protein" species:9823
            "Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K11294
            GeneTree:ENSGT00550000074656 OMA:RLEYSQS RefSeq:XP_003133770.2
            Ensembl:ENSSSCT00000032422 GeneID:100519984 KEGG:ssc:100519984
            Uniprot:I3LRH2
        Length = 724

 Score = 174 (66.3 bits), Expect = 3.9e-12, P = 3.9e-12
 Identities = 38/85 (44%), Positives = 58/85 (68%)

Query:    33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
             +++PS  LFV GLS+ TT+ETL+++F   G +  A+IV  RE+G SKGFGFV + + E A
Sbjct:   580 RSQPSKTLFVKGLSEETTEETLKESFD--GSI-RARIVTDRETGSSKGFGFVDFNSEEDA 636

Query:    93 GKAIEGMDGKFLDGWVIFVEYAKPR 117
               A E M+   +DG  + +++AKP+
Sbjct:   637 KAAKEAMEDGEIDGNKVTLDWAKPK 661

 Score = 114 (45.2 bits), Expect = 1.0e-05, P = 1.0e-05
 Identities = 30/98 (30%), Positives = 54/98 (55%)

Query:    37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
             S  L +S L+   T+ETL++ F    +    K+ ++ ++G SKG+ F+++A+ E A +A+
Sbjct:   498 SKTLVLSNLAYSATEETLQEVFE---KATFIKVPQN-QNGKSKGYAFIEFASFEDAKEAL 553

Query:    97 EGMDGKFLDGWVIFVEYAKPRQPPTLPSQ-NNTNFQYG 133
                + + ++G  I +E   PR  P   SQ + T F  G
Sbjct:   554 NSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKG 591


>TAIR|locus:2119505 [details] [associations]
            symbol:AT4G13860 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339 HOGENOM:HOG000276232
            UniGene:At.33330 EMBL:BT014844 IPI:IPI00523584 RefSeq:NP_193122.2
            ProteinModelPortal:Q6ID29 SMR:Q6ID29 PRIDE:Q6ID29
            EnsemblPlants:AT4G13860.1 GeneID:827020 KEGG:ath:AT4G13860
            TAIR:At4g13860 InParanoid:Q6ID29 OMA:KIEEMFL PhylomeDB:Q6ID29
            Genevestigator:Q6ID29 Uniprot:Q6ID29
        Length = 87

 Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
 Identities = 32/70 (45%), Positives = 47/70 (67%)

Query:    37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
             +T ++V  LS  TTD+ LR+ FS +G VV A +++ R +  S+GFGFV Y++   A  A+
Sbjct:     2 ATRVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAV 61

Query:    97 EGMDGKFLDG 106
              GMDGK L+G
Sbjct:    62 SGMDGKELNG 71


>MGI|MGI:97286 [details] [associations]
            symbol:Ncl "nucleolin" species:10090 "Mus musculus"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
            "angiogenesis" evidence=ISO] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723
            "RNA binding" evidence=ISO;IDA] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005654
            "nucleoplasm" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005938
            "cell cortex" evidence=ISO] [GO:0008022 "protein C-terminus
            binding" evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
            evidence=ISO] [GO:0042162 "telomeric DNA binding" evidence=ISO]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 MGI:MGI:97286 GO:GO:0005938 GO:GO:0005654
            GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0001525
            GO:GO:0003723 GO:GO:0030529 GO:GO:0042162 eggNOG:COG0724
            HOVERGEN:HBG002295 KO:K11294 GeneTree:ENSGT00550000074656 CTD:4691
            HOGENOM:HOG000113885 OMA:KERDTRT OrthoDB:EOG45MN5J ChiTaRS:NCL
            EMBL:X07699 EMBL:AF318184 EMBL:AK050958 EMBL:AK083307 EMBL:AK144894
            EMBL:AK161706 EMBL:AK163275 EMBL:BC005460 EMBL:M22089
            IPI:IPI00317794 PIR:A29958 RefSeq:NP_035010.3 UniGene:Mm.154378
            UniGene:Mm.474153 ProteinModelPortal:P09405 SMR:P09405
            IntAct:P09405 STRING:P09405 PhosphoSite:P09405
            REPRODUCTION-2DPAGE:P09405 PaxDb:P09405 PRIDE:P09405
            Ensembl:ENSMUST00000027438 GeneID:17975 KEGG:mmu:17975
            UCSC:uc007bvl.1 InParanoid:P09405 NextBio:292933 PMAP-CutDB:P09405
            Bgee:P09405 CleanEx:MM_NCL Genevestigator:P09405
            GermOnline:ENSMUSG00000026234 Uniprot:P09405
        Length = 707

 Score = 173 (66.0 bits), Expect = 4.9e-12, P = 4.9e-12
 Identities = 39/85 (45%), Positives = 58/85 (68%)

Query:    33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
             +++PS  LFV GLS+ TT+ETL+++F   G V  A+IV  RE+G SKGFGFV + + E A
Sbjct:   564 RSQPSKTLFVKGLSEDTTEETLKESFE--GSV-RARIVTDRETGSSKGFGFVDFNSEEDA 620

Query:    93 GKAIEGMDGKFLDGWVIFVEYAKPR 117
               A E M+   +DG  + +++AKP+
Sbjct:   621 KAAKEAMEDGEIDGNKVTLDWAKPK 645


>UNIPROTKB|P19338 [details] [associations]
            symbol:NCL "Nucleolin" species:9606 "Homo sapiens"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005654
            "nucleoplasm" evidence=IEA] [GO:0008022 "protein C-terminus
            binding" evidence=IPI] [GO:0001525 "angiogenesis" evidence=IDA]
            [GO:0005938 "cell cortex" evidence=IDA] [GO:0005515 "protein
            binding" evidence=IPI] [GO:0042162 "telomeric DNA binding"
            evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0030529
            "ribonucleoprotein complex" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005938
            Pathway_Interaction_DB:telomerasepathway GO:GO:0005654
            GO:GO:0005730 Pathway_Interaction_DB:aurora_b_pathway GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0001525 GO:GO:0003723 GO:GO:0030529
            GO:GO:0042162 EMBL:AC017104 eggNOG:COG0724 HOVERGEN:HBG002295
            KO:K11294 CTD:4691 HOGENOM:HOG000113885 EMBL:M60858 EMBL:AK091742
            IPI:IPI00604620 PIR:A35804 PIR:S53728 RefSeq:NP_005372.2
            UniGene:Hs.79110 PDB:2FC8 PDB:2FC9 PDB:2KRR PDBsum:2FC8 PDBsum:2FC9
            PDBsum:2KRR ProteinModelPortal:P19338 SMR:P19338 DIP:DIP-89N
            IntAct:P19338 MINT:MINT-4999081 STRING:P19338 PhosphoSite:P19338
            DMDM:90110781 DOSAC-COBS-2DPAGE:P19338 SWISS-2DPAGE:P19338
            PaxDb:P19338 PRIDE:P19338 DNASU:4691 Ensembl:ENST00000322723
            GeneID:4691 KEGG:hsa:4691 UCSC:uc002vru.3 GeneCards:GC02M232318
            HGNC:HGNC:7667 HPA:CAB004210 HPA:HPA023981 MIM:164035
            neXtProt:NX_P19338 PharmGKB:PA31469 InParanoid:P19338 OMA:KERDTRT
            OrthoDB:EOG45MN5J PhylomeDB:P19338 ChiTaRS:NCL
            EvolutionaryTrace:P19338 GenomeRNAi:4691 NextBio:18090
            PMAP-CutDB:P19338 ArrayExpress:P19338 Bgee:P19338 CleanEx:HS_NCL
            Genevestigator:P19338 GermOnline:ENSG00000115053 Uniprot:P19338
        Length = 710

 Score = 173 (66.0 bits), Expect = 4.9e-12, P = 4.9e-12
 Identities = 39/85 (45%), Positives = 58/85 (68%)

Query:    33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
             +++PS  LFV GLS+ TT+ETL+++F   G V  A+IV  RE+G SKGFGFV + + E A
Sbjct:   567 RSQPSKTLFVKGLSEDTTEETLKESFD--GSV-RARIVTDRETGSSKGFGFVDFNSEEDA 623

Query:    93 GKAIEGMDGKFLDGWVIFVEYAKPR 117
               A E M+   +DG  + +++AKP+
Sbjct:   624 KAAKEAMEDGEIDGNKVTLDWAKPK 648

 Score = 117 (46.2 bits), Expect = 4.9e-06, P = 4.9e-06
 Identities = 31/98 (31%), Positives = 54/98 (55%)

Query:    37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
             S  L +S LS   T+ETL++ F    +    K+ ++ ++G SKG+ F+++A+ E A +A+
Sbjct:   485 SKTLVLSNLSYSATEETLQEVFE---KATFIKVPQN-QNGKSKGYAFIEFASFEDAKEAL 540

Query:    97 EGMDGKFLDGWVIFVEYAKPRQPPTLPSQ-NNTNFQYG 133
                + + ++G  I +E   PR  P   SQ + T F  G
Sbjct:   541 NSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKG 578


>UNIPROTKB|Q4R4J7 [details] [associations]
            symbol:NCL "Nucleolin" species:9541 "Macaca fascicularis"
            [GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
            "ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
            DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
            GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 OrthoDB:EOG45MN5J
            EMBL:AB169897 EMBL:AB168220 ProteinModelPortal:Q4R4J7 SMR:Q4R4J7
            PRIDE:Q4R4J7 Uniprot:Q4R4J7
        Length = 711

 Score = 173 (66.0 bits), Expect = 4.9e-12, P = 4.9e-12
 Identities = 39/85 (45%), Positives = 58/85 (68%)

Query:    33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
             +++PS  LFV GLS+ TT+ETL+++F   G V  A+IV  RE+G SKGFGFV + + E A
Sbjct:   568 RSQPSKTLFVKGLSEDTTEETLKESFD--GSV-RARIVTDRETGSSKGFGFVDFNSEEDA 624

Query:    93 GKAIEGMDGKFLDGWVIFVEYAKPR 117
               A E M+   +DG  + +++AKP+
Sbjct:   625 KAAKEAMEDGEIDGNKVTLDWAKPK 649

 Score = 117 (46.2 bits), Expect = 4.9e-06, P = 4.9e-06
 Identities = 31/98 (31%), Positives = 54/98 (55%)

Query:    37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
             S  L +S LS   T+ETL++ F    +    K+ ++ ++G SKG+ F+++A+ E A +A+
Sbjct:   486 SKTLVLSNLSYSATEETLQEVFE---KATFIKVPQN-QNGKSKGYAFIEFASFEDAKEAL 541

Query:    97 EGMDGKFLDGWVIFVEYAKPRQPPTLPSQ-NNTNFQYG 133
                + + ++G  I +E   PR  P   SQ + T F  G
Sbjct:   542 NSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKG 579


>UNIPROTKB|Q5RF26 [details] [associations]
            symbol:NCL "Nucleolin" species:9601 "Pongo abelii"
            [GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
            "ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
            DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
            GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 KO:K11294 CTD:4691
            EMBL:CR857335 RefSeq:NP_001127178.1 UniGene:Pab.18146
            ProteinModelPortal:Q5RF26 SMR:Q5RF26 GeneID:100174230
            KEGG:pon:100174230 InParanoid:Q5RF26 Uniprot:Q5RF26
        Length = 712

 Score = 173 (66.0 bits), Expect = 4.9e-12, P = 4.9e-12
 Identities = 39/85 (45%), Positives = 58/85 (68%)

Query:    33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
             +++PS  LFV GLS+ TT+ETL+++F   G V  A+IV  RE+G SKGFGFV + + E A
Sbjct:   569 RSQPSKTLFVKGLSEDTTEETLKESFD--GSV-RARIVTDRETGSSKGFGFVDFNSEEDA 625

Query:    93 GKAIEGMDGKFLDGWVIFVEYAKPR 117
               A E M+   +DG  + +++AKP+
Sbjct:   626 KAAKEAMEDGEIDGNKVTLDWAKPK 650

 Score = 117 (46.2 bits), Expect = 4.9e-06, P = 4.9e-06
 Identities = 31/98 (31%), Positives = 54/98 (55%)

Query:    37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
             S  L +S LS   T+ETL++ F    +    K+ ++ ++G SKG+ F+++A+ E A +A+
Sbjct:   487 SKTLVLSNLSYSATEETLQEVFE---KATFIKVPQN-QNGKSKGYAFIEFASFEDAKEAL 542

Query:    97 EGMDGKFLDGWVIFVEYAKPRQPPTLPSQ-NNTNFQYG 133
                + + ++G  I +E   PR  P   SQ + T F  G
Sbjct:   543 NSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKG 580


>RGD|3153 [details] [associations]
            symbol:Ncl "nucleolin" species:10116 "Rattus norvegicus"
          [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
          "angiogenesis" evidence=ISO] [GO:0003676 "nucleic acid binding"
          evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO;ISS] [GO:0005634
          "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm" evidence=ISO]
          [GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
          evidence=IEA] [GO:0005938 "cell cortex" evidence=ISO] [GO:0008022
          "protein C-terminus binding" evidence=ISO] [GO:0030529
          "ribonucleoprotein complex" evidence=ISO;ISS] [GO:0042162 "telomeric
          DNA binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
          Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:3153 GO:GO:0005737
          GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
          GO:GO:0030529 GO:GO:0042162 eggNOG:COG0724 HOVERGEN:HBG002295
          OrthoDB:EOG45MN5J EMBL:M55022 EMBL:M55015 EMBL:M55017 EMBL:M55020
          EMBL:M22090 IPI:IPI00882501 PIR:JH0148 UniGene:Rn.144561
          UniGene:Rn.7735 ProteinModelPortal:P13383 SMR:P13383 IntAct:P13383
          STRING:P13383 PhosphoSite:P13383 PRIDE:P13383 UCSC:RGD:3153
          InParanoid:P13383 ArrayExpress:P13383 Genevestigator:P13383
          GermOnline:ENSRNOG00000018273 Uniprot:P13383
        Length = 713

 Score = 173 (66.0 bits), Expect = 4.9e-12, P = 4.9e-12
 Identities = 39/85 (45%), Positives = 58/85 (68%)

Query:    33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
             +++PS  LFV GLS+ TT+ETL+++F   G V  A+IV  RE+G SKGFGFV + + E A
Sbjct:   570 RSQPSKTLFVKGLSEDTTEETLKESFE--GSV-RARIVTDRETGSSKGFGFVDFNSEEDA 626

Query:    93 GKAIEGMDGKFLDGWVIFVEYAKPR 117
               A E M+   +DG  + +++AKP+
Sbjct:   627 KAAKEAMEDGEIDGNKVTLDWAKPK 651

 Score = 109 (43.4 bits), Expect = 3.5e-05, P = 3.5e-05
 Identities = 31/98 (31%), Positives = 51/98 (52%)

Query:    37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
             S  L +S LS   T+ETL++ F    +    K+ ++   G SKG+ F+++A+ E A +A+
Sbjct:   488 SKTLVLSNLSYSATEETLQEVFE---KATFIKVPQNPH-GKSKGYAFIEFASFEDAKEAL 543

Query:    97 EGMDGKFLDGWVIFVEYAKPRQPPTLPSQ-NNTNFQYG 133
                +   ++G  I +E   PR  P   SQ + T F  G
Sbjct:   544 NSCNKMEIEGRTIRLELQGPRGSPNARSQPSKTLFVKG 581


>UNIPROTKB|P08199 [details] [associations]
            symbol:NCL "Nucleolin" species:10036 "Mesocricetus auratus"
            [GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
            "ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
            DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
            GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 EMBL:M15825
            PIR:A27441 PDB:1FJ7 PDB:1FJC PDB:1FJE PDB:1RKJ PDBsum:1FJ7
            PDBsum:1FJC PDBsum:1FJE PDBsum:1RKJ ProteinModelPortal:P08199
            SMR:P08199 PRIDE:P08199 EvolutionaryTrace:P08199 Uniprot:P08199
        Length = 714

 Score = 173 (66.0 bits), Expect = 4.9e-12, P = 4.9e-12
 Identities = 39/85 (45%), Positives = 58/85 (68%)

Query:    33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
             +++PS  LFV GLS+ TT+ETL+++F   G V  A+IV  RE+G SKGFGFV + + E A
Sbjct:   567 RSQPSKTLFVKGLSEDTTEETLKESFE--GSV-RARIVTDRETGSSKGFGFVDFNSEEDA 623

Query:    93 GKAIEGMDGKFLDGWVIFVEYAKPR 117
               A E M+   +DG  + +++AKP+
Sbjct:   624 KAAKEAMEDGEIDGNKVTLDWAKPK 648

 Score = 114 (45.2 bits), Expect = 1.0e-05, P = 1.0e-05
 Identities = 31/98 (31%), Positives = 53/98 (54%)

Query:    37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
             S  L +S LS   T+ETL++ F    +    K+ ++++ G SKG+ F+++A+ E A +A+
Sbjct:   485 SKTLVLSNLSYSATEETLQEVFE---KATFIKVPQNQQ-GKSKGYAFIEFASFEDAKEAL 540

Query:    97 EGMDGKFLDGWVIFVEYAKPRQPPTLPSQ-NNTNFQYG 133
                +   ++G  I +E   PR  P   SQ + T F  G
Sbjct:   541 NSCNKMEIEGRTIRLELQGPRGSPNARSQPSKTLFVKG 578


>UNIPROTKB|Q5U328 [details] [associations]
            symbol:Ncl "Nucleolin, isoform CRA_c" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 RGD:3153 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 HOVERGEN:HBG002295 KO:K11294
            GeneTree:ENSGT00550000074656 CTD:4691 HOGENOM:HOG000113885
            UniGene:Rn.144561 UniGene:Rn.7735 EMBL:CH474004 OMA:ENAMEIR
            EMBL:BC085751 IPI:IPI00231827 RefSeq:NP_036881.2 SMR:Q5U328
            STRING:Q5U328 Ensembl:ENSRNOT00000024712 GeneID:25135
            KEGG:rno:25135 InParanoid:Q5U328 NextBio:605553
            Genevestigator:Q5U328 Uniprot:Q5U328
        Length = 714

 Score = 173 (66.0 bits), Expect = 4.9e-12, P = 4.9e-12
 Identities = 39/85 (45%), Positives = 58/85 (68%)

Query:    33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
             +++PS  LFV GLS+ TT+ETL+++F   G V  A+IV  RE+G SKGFGFV + + E A
Sbjct:   571 RSQPSKTLFVKGLSEDTTEETLKESFE--GSV-RARIVTDRETGSSKGFGFVDFNSEEDA 627

Query:    93 GKAIEGMDGKFLDGWVIFVEYAKPR 117
               A E M+   +DG  + +++AKP+
Sbjct:   628 KAAKEAMEDGEIDGNKVTLDWAKPK 652

 Score = 109 (43.4 bits), Expect = 3.5e-05, P = 3.5e-05
 Identities = 31/98 (31%), Positives = 51/98 (52%)

Query:    37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
             S  L +S LS   T+ETL++ F    +    K+ ++   G SKG+ F+++A+ E A +A+
Sbjct:   489 SKTLVLSNLSYSATEETLQEVFE---KATFIKVPQNPH-GKSKGYAFIEFASFEDAKEAL 544

Query:    97 EGMDGKFLDGWVIFVEYAKPRQPPTLPSQ-NNTNFQYG 133
                +   ++G  I +E   PR  P   SQ + T F  G
Sbjct:   545 NSCNKMEIEGRTIRLELQGPRGSPNARSQPSKTLFVKG 582


>UNIPROTKB|F1Q0B0 [details] [associations]
            symbol:NCL "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0042162 "telomeric DNA binding" evidence=IEA]
            [GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008022
            "protein C-terminus binding" evidence=IEA] [GO:0005938 "cell
            cortex" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
            [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0001525 "angiogenesis" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005938 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0001525 GO:GO:0030529 GO:GO:0042162
            KO:K11294 GeneTree:ENSGT00550000074656 CTD:4691 OMA:KERDTRT
            EMBL:AAEX03014432 RefSeq:XP_850477.2 Ensembl:ENSCAFT00000017622
            GeneID:608445 KEGG:cfa:608445 Uniprot:F1Q0B0
        Length = 715

 Score = 173 (66.0 bits), Expect = 4.9e-12, P = 4.9e-12
 Identities = 39/85 (45%), Positives = 58/85 (68%)

Query:    33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
             +++PS  LFV GLS+ TT+ETL+++F   G V  A+IV  RE+G SKGFGFV + + E A
Sbjct:   572 RSQPSKTLFVKGLSEDTTEETLKESFD--GSV-RARIVTDRETGSSKGFGFVDFNSEEDA 628

Query:    93 GKAIEGMDGKFLDGWVIFVEYAKPR 117
               A E M+   +DG  + +++AKP+
Sbjct:   629 KAAKEAMEDGEIDGNKVTLDWAKPK 653

 Score = 117 (46.2 bits), Expect = 4.9e-06, P = 4.9e-06
 Identities = 31/98 (31%), Positives = 54/98 (55%)

Query:    37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
             S  L +S LS   T+ETL++ F    +    K+ ++ ++G SKG+ F+++A+ E A +A+
Sbjct:   490 SKTLVLSNLSYSATEETLQEVFE---KATFIKVPQN-QNGKSKGYAFIEFASFEDAKEAL 545

Query:    97 EGMDGKFLDGWVIFVEYAKPRQPPTLPSQ-NNTNFQYG 133
                + + ++G  I +E   PR  P   SQ + T F  G
Sbjct:   546 NSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKG 583


>UNIPROTKB|G3MYJ0 [details] [associations]
            symbol:G3MYJ0 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
            Ensembl:ENSBTAT00000064073 Uniprot:G3MYJ0
        Length = 625

 Score = 172 (65.6 bits), Expect = 5.1e-12, P = 5.1e-12
 Identities = 38/85 (44%), Positives = 58/85 (68%)

Query:    33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
             +++PS  LFV GLS+ TT+ETL+++F   G +  A+IV  RE+G SKGFGFV + + E A
Sbjct:   482 RSQPSKTLFVKGLSEDTTEETLKESFD--GSI-RARIVTDRETGSSKGFGFVDFNSEEDA 538

Query:    93 GKAIEGMDGKFLDGWVIFVEYAKPR 117
               A E M+   +DG  + +++AKP+
Sbjct:   539 KAAKEAMEDGEIDGNKVTLDWAKPK 563

 Score = 126 (49.4 bits), Expect = 4.5e-07, P = 4.5e-07
 Identities = 32/98 (32%), Positives = 55/98 (56%)

Query:    37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
             S  L +S LS   T+ETL++ F    +  H K+ ++ ++G SKG+ F+++A+ E A +A+
Sbjct:   400 SKTLVLSNLSYSATEETLQEVFE---KATHIKVPQN-QNGKSKGYAFIEFASFEDAKEAL 455

Query:    97 EGMDGKFLDGWVIFVEYAKPRQPPTLPSQ-NNTNFQYG 133
                + + ++G  I +E   PR  P   SQ + T F  G
Sbjct:   456 NSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKG 493


>UNIPROTKB|G3MXT4 [details] [associations]
            symbol:G3MXT4 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
            Ensembl:ENSBTAT00000065413 Uniprot:G3MXT4
        Length = 630

 Score = 172 (65.6 bits), Expect = 5.2e-12, P = 5.2e-12
 Identities = 38/85 (44%), Positives = 58/85 (68%)

Query:    33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
             +++PS  LFV GLS+ TT+ETL+++F   G +  A+IV  RE+G SKGFGFV + + E A
Sbjct:   487 RSQPSKTLFVKGLSEDTTEETLKESFD--GSI-RARIVTDRETGSSKGFGFVDFNSEEDA 543

Query:    93 GKAIEGMDGKFLDGWVIFVEYAKPR 117
               A E M+   +DG  + +++AKP+
Sbjct:   544 KAAKEAMEDGEIDGNKVTLDWAKPK 568

 Score = 126 (49.4 bits), Expect = 4.5e-07, P = 4.5e-07
 Identities = 32/98 (32%), Positives = 55/98 (56%)

Query:    37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
             S  L +S LS   T+ETL++ F    +  H K+ ++ ++G SKG+ F+++A+ E A +A+
Sbjct:   405 SKTLVLSNLSYSATEETLQEVFE---KATHIKVPQN-QNGKSKGYAFIEFASFEDAKEAL 460

Query:    97 EGMDGKFLDGWVIFVEYAKPRQPPTLPSQ-NNTNFQYG 133
                + + ++G  I +E   PR  P   SQ + T F  G
Sbjct:   461 NSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKG 498


>UNIPROTKB|G3X7M4 [details] [associations]
            symbol:G3X7M4 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
            Ensembl:ENSBTAT00000038502 OMA:ENAMEIR Uniprot:G3X7M4
        Length = 630

 Score = 172 (65.6 bits), Expect = 5.2e-12, P = 5.2e-12
 Identities = 38/85 (44%), Positives = 58/85 (68%)

Query:    33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
             +++PS  LFV GLS+ TT+ETL+++F   G +  A+IV  RE+G SKGFGFV + + E A
Sbjct:   487 RSQPSKTLFVKGLSEDTTEETLKESFD--GSI-RARIVTDRETGSSKGFGFVDFNSEEDA 543

Query:    93 GKAIEGMDGKFLDGWVIFVEYAKPR 117
               A E M+   +DG  + +++AKP+
Sbjct:   544 KAAKEAMEDGEIDGNKVTLDWAKPK 568

 Score = 126 (49.4 bits), Expect = 4.5e-07, P = 4.5e-07
 Identities = 32/98 (32%), Positives = 55/98 (56%)

Query:    37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
             S  L +S LS   T+ETL++ F    +  H K+ ++ ++G SKG+ F+++A+ E A +A+
Sbjct:   405 SKTLVLSNLSYSATEETLQEVFE---KATHIKVPQN-QNGKSKGYAFIEFASFEDAKEAL 460

Query:    97 EGMDGKFLDGWVIFVEYAKPRQPPTLPSQ-NNTNFQYG 133
                + + ++G  I +E   PR  P   SQ + T F  G
Sbjct:   461 NSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKG 498


>UNIPROTKB|E1B8K6 [details] [associations]
            symbol:NCL "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K11294
            GeneTree:ENSGT00550000074656 CTD:4691 EMBL:DAAA02006195
            IPI:IPI00971535 RefSeq:NP_001193589.1 UniGene:Bt.107977
            UniGene:Bt.108558 UniGene:Bt.7403 UniGene:Bt.79166
            ProteinModelPortal:E1B8K6 IntAct:E1B8K6 PRIDE:E1B8K6
            Ensembl:ENSBTAT00000021529 GeneID:497013 KEGG:bta:497013
            OMA:RLEYSQS NextBio:20865826 Uniprot:E1B8K6
        Length = 720

 Score = 172 (65.6 bits), Expect = 6.4e-12, P = 6.4e-12
 Identities = 38/85 (44%), Positives = 58/85 (68%)

Query:    33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
             +++PS  LFV GLS+ TT+ETL+++F   G +  A+IV  RE+G SKGFGFV + + E A
Sbjct:   577 RSQPSKTLFVKGLSEDTTEETLKESFD--GSI-RARIVTDRETGSSKGFGFVDFNSEEDA 633

Query:    93 GKAIEGMDGKFLDGWVIFVEYAKPR 117
               A E M+   +DG  + +++AKP+
Sbjct:   634 KAAKEAMEDGEIDGNKVTLDWAKPK 658

 Score = 126 (49.4 bits), Expect = 5.4e-07, P = 5.4e-07
 Identities = 32/98 (32%), Positives = 55/98 (56%)

Query:    37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
             S  L +S LS   T+ETL++ F    +  H K+ ++ ++G SKG+ F+++A+ E A +A+
Sbjct:   495 SKTLVLSNLSYSATEETLQEVFE---KATHIKVPQN-QNGKSKGYAFIEFASFEDAKEAL 550

Query:    97 EGMDGKFLDGWVIFVEYAKPRQPPTLPSQ-NNTNFQYG 133
                + + ++G  I +E   PR  P   SQ + T F  G
Sbjct:   551 NSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKG 588


>UNIPROTKB|E2R9I0 [details] [associations]
            symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
            evidence=IEA] [GO:0008266 "poly(U) RNA binding" evidence=IEA]
            [GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0010494 GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
            EMBL:AAEX03009572 ProteinModelPortal:E2R9I0
            Ensembl:ENSCAFT00000004950 Uniprot:E2R9I0
        Length = 631

 Score = 170 (64.9 bits), Expect = 8.6e-12, P = 8.6e-12
 Identities = 35/85 (41%), Positives = 54/85 (63%)

Query:    33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
             +A+  TN+++    +   DE+L++ FS FG+ +  K+++   SG SKGFGFV Y   E A
Sbjct:   186 KAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHEDA 244

Query:    93 GKAIEGMDGKFLDGWVIFVEYAKPR 117
              KA+E M+GK + G VIFV  A+ +
Sbjct:   245 NKAVEEMNGKEISGKVIFVGRAQKK 269

 Score = 156 (60.0 bits), Expect = 2.7e-10, P = 2.7e-10
 Identities = 45/118 (38%), Positives = 60/118 (50%)

Query:    10 PRGLRRLFSTSPFSSSLNPPQR---PQAEPST------NLFVSGLSKRTTDETLRDTFSA 60
             P    R   T  F      P R    Q +PS       N+F+  L K   ++ L DTFSA
Sbjct:    62 PADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 121

Query:    61 FGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKPRQ 118
             FG ++  K+V   E+G SKG+ FV + T EAA KAIE M+G  L+   +FV   K R+
Sbjct:   122 FGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177

 Score = 139 (54.0 bits), Expect = 1.8e-08, P = 1.8e-08
 Identities = 30/80 (37%), Positives = 47/80 (58%)

Query:    39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
             NL++  L     DE LR  FS FG +  AK++   E G SKGFGFV +++ E A KA+  
Sbjct:   295 NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTE 352

Query:    99 MDGKFLDGWVIFVEYAKPRQ 118
             M+G+ +    ++V  A+ ++
Sbjct:   353 MNGRIVGSKPLYVALAQRKE 372


>UNIPROTKB|E2R9I1 [details] [associations]
            symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0046983 "protein dimerization activity"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR011598
            InterPro:IPR012677 Pfam:PF00010 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS50888 PROSITE:PS51309 SMART:SM00353
            SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 Gene3D:4.10.280.10 SUPFAM:SSF47459
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            GeneTree:ENSGT00640000091232 EMBL:AAEX03009572
            Ensembl:ENSCAFT00000004949 Uniprot:E2R9I1
        Length = 700

 Score = 170 (64.9 bits), Expect = 1.0e-11, P = 1.0e-11
 Identities = 35/85 (41%), Positives = 54/85 (63%)

Query:    33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
             +A+  TN+++    +   DE+L++ FS FG+ +  K+++   SG SKGFGFV Y   E A
Sbjct:   226 KAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHEDA 284

Query:    93 GKAIEGMDGKFLDGWVIFVEYAKPR 117
              KA+E M+GK + G VIFV  A+ +
Sbjct:   285 NKAVEEMNGKEISGKVIFVGRAQKK 309

 Score = 155 (59.6 bits), Expect = 4.1e-10, P = 4.1e-10
 Identities = 36/80 (45%), Positives = 50/80 (62%)

Query:    39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
             N+F+  L K   ++ L DTFSAFG ++  K+V   E+G SKG+ FV + T EAA KAIE 
Sbjct:   140 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEK 197

Query:    99 MDGKFLDGWVIFVEYAKPRQ 118
             M+G  L+   +FV   K R+
Sbjct:   198 MNGMLLNDRKVFVGRFKSRK 217

 Score = 139 (54.0 bits), Expect = 2.1e-08, P = 2.1e-08
 Identities = 30/80 (37%), Positives = 47/80 (58%)

Query:    39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
             NL++  L     DE LR  FS FG +  AK++   E G SKGFGFV +++ E A KA+  
Sbjct:   335 NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTE 392

Query:    99 MDGKFLDGWVIFVEYAKPRQ 118
             M+G+ +    ++V  A+ ++
Sbjct:   393 MNGRIVGSKPLYVALAQRKE 412


>UNIPROTKB|Q28IQ9 [details] [associations]
            symbol:cirbp "Cold-inducible RNA-binding protein"
            species:8364 "Xenopus (Silurana) tropicalis" [GO:0003729 "mRNA
            binding" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
            evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
            "cytoplasm" evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS]
            [GO:0009409 "response to cold" evidence=ISS] [GO:0009790 "embryo
            development" evidence=ISS] [GO:0016477 "cell migration"
            evidence=ISS] [GO:0019899 "enzyme binding" evidence=ISS]
            [GO:0022008 "neurogenesis" evidence=ISS] [GO:0045727 "positive
            regulation of translation" evidence=ISS] [GO:0048255 "mRNA
            stabilization" evidence=ISS] [GO:0048793 "pronephros development"
            evidence=ISS] [GO:0060212 "negative regulation of
            nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
            [GO:0005840 "ribosome" evidence=ISS] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0016477
            GO:GO:0022008 GO:GO:0000166 GO:GO:0009409 Gene3D:3.30.70.330
            GO:GO:0019899 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
            GO:GO:0007369 eggNOG:COG0724 GO:GO:0048793 HOVERGEN:HBG107480
            GO:GO:0060212 KO:K13195 CTD:1153 HOGENOM:HOG000276232 EMBL:CR760272
            RefSeq:NP_001017228.1 UniGene:Str.47654 ProteinModelPortal:Q28IQ9
            SMR:Q28IQ9 STRING:Q28IQ9 GeneID:549982 KEGG:xtr:549982
            Xenbase:XB-GENE-492781 Uniprot:Q28IQ9
        Length = 166

 Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
 Identities = 35/75 (46%), Positives = 47/75 (62%)

Query:    40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
             LFV GL+  TT+E+L   FS +G+V    +VK RES  S+GFGFV +   E A  A+  M
Sbjct:     8 LFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAM 67

Query:   100 DGKFLDGWVIFVEYA 114
             +GK +DG  I V+ A
Sbjct:    68 NGKSVDGRQIRVDQA 82


>UNIPROTKB|F1SV06 [details] [associations]
            symbol:PABPC4 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
            [GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
            "poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
            GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
            GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
            EMBL:CR956622 Ensembl:ENSSSCT00000004056 Uniprot:F1SV06
        Length = 631

 Score = 169 (64.5 bits), Expect = 1.1e-11, P = 1.1e-11
 Identities = 35/85 (41%), Positives = 53/85 (62%)

Query:    33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
             +A+  TN+++    +   DE L++ FS FG+ +  K+++   SG SKGFGFV Y   E A
Sbjct:   186 KAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHEDA 244

Query:    93 GKAIEGMDGKFLDGWVIFVEYAKPR 117
              KA+E M+GK + G VIFV  A+ +
Sbjct:   245 NKAVEEMNGKEISGKVIFVGRAQKK 269

 Score = 156 (60.0 bits), Expect = 2.7e-10, P = 2.7e-10
 Identities = 45/118 (38%), Positives = 60/118 (50%)

Query:    10 PRGLRRLFSTSPFSSSLNPPQR---PQAEPST------NLFVSGLSKRTTDETLRDTFSA 60
             P    R   T  F      P R    Q +PS       N+F+  L K   ++ L DTFSA
Sbjct:    62 PADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 121

Query:    61 FGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKPRQ 118
             FG ++  K+V   E+G SKG+ FV + T EAA KAIE M+G  L+   +FV   K R+
Sbjct:   122 FGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177

 Score = 139 (54.0 bits), Expect = 1.8e-08, P = 1.8e-08
 Identities = 30/80 (37%), Positives = 47/80 (58%)

Query:    39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
             NL++  L     DE LR  FS FG +  AK++   E G SKGFGFV +++ E A KA+  
Sbjct:   295 NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTE 352

Query:    99 MDGKFLDGWVIFVEYAKPRQ 118
             M+G+ +    ++V  A+ ++
Sbjct:   353 MNGRIVGSKPLYVALAQRKE 372


>DICTYBASE|DDB_G0292698 [details] [associations]
            symbol:DDB_G0292698 "RNA-binding region RNP-1
            domain-containing protein" species:44689 "Dictyostelium discoideum"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0005575 "cellular_component"
            evidence=ND] [GO:0044351 "macropinocytosis" evidence=RCA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 dictyBase:DDB_G0292698 GO:GO:0000166
            EMBL:AAFI02000194 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:NOG297815
            RefSeq:XP_629578.1 ProteinModelPortal:Q54CU2 STRING:Q54CU2
            PRIDE:Q54CU2 EnsemblProtists:DDB0233351 GeneID:8628839
            KEGG:ddi:DDB_G0292698 InParanoid:Q54CU2 OMA:DPNTKES Uniprot:Q54CU2
        Length = 306

 Score = 144 (55.7 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
 Identities = 34/98 (34%), Positives = 54/98 (55%)

Query:    18 STSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGY 77
             S SP +++ +            L VS L+ RT +  LRDTF++ G+V+   I+    +  
Sbjct:    51 SESPPNTNTSSDNNVDQNNGNTLHVSNLNPRTRESDLRDTFASIGKVIDCTILLDPNTKE 110

Query:    78 SKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAK 115
             S+GFGFV Y++ + A  AI+ +D   +DG  I VE +K
Sbjct:   111 SRGFGFVTYSSGDEAQDAIQRLDSTKIDGNTIRVEKSK 148

 Score = 37 (18.1 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
 Identities = 8/19 (42%), Positives = 10/19 (52%)

Query:   116 PRQP--PTLPSQNNTNFQY 132
             P  P  PT P  NN + +Y
Sbjct:   232 PSYPSYPTYPKYNNNDSRY 250


>UNIPROTKB|A4IFC3 [details] [associations]
            symbol:PABPC4 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
            [GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
            "poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
            GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
            eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            HOGENOM:HOG000217922 GeneTree:ENSGT00640000091232 CTD:8761
            OMA:XVVCDEN OrthoDB:EOG4T1HM1 EMBL:DAAA02009142 EMBL:BC134509
            IPI:IPI00689745 RefSeq:NP_001077193.1 UniGene:Bt.11192 SMR:A4IFC3
            Ensembl:ENSBTAT00000022761 GeneID:534576 KEGG:bta:534576
            InParanoid:A4IFC3 NextBio:20876450 Uniprot:A4IFC3
        Length = 645

 Score = 168 (64.2 bits), Expect = 1.5e-11, P = 1.5e-11
 Identities = 35/85 (41%), Positives = 53/85 (62%)

Query:    33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
             +A+  TN+++    +   DE L++ FS FG+ +  K+++   SG SKGFGFV Y   E A
Sbjct:   186 KAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHEDA 244

Query:    93 GKAIEGMDGKFLDGWVIFVEYAKPR 117
              KA+E M+GK + G VIFV  A+ +
Sbjct:   245 NKAVEEMNGKEITGKVIFVGRAQKK 269

 Score = 156 (60.0 bits), Expect = 2.8e-10, P = 2.8e-10
 Identities = 45/118 (38%), Positives = 60/118 (50%)

Query:    10 PRGLRRLFSTSPFSSSLNPPQR---PQAEPST------NLFVSGLSKRTTDETLRDTFSA 60
             P    R   T  F      P R    Q +PS       N+F+  L K   ++ L DTFSA
Sbjct:    62 PADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 121

Query:    61 FGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKPRQ 118
             FG ++  K+V   E+G SKG+ FV + T EAA KAIE M+G  L+   +FV   K R+
Sbjct:   122 FGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177

 Score = 139 (54.0 bits), Expect = 1.9e-08, P = 1.9e-08
 Identities = 30/80 (37%), Positives = 47/80 (58%)

Query:    39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
             NL++  L     DE LR  FS FG +  AK++   E G SKGFGFV +++ E A KA+  
Sbjct:   295 NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTE 352

Query:    99 MDGKFLDGWVIFVEYAKPRQ 118
             M+G+ +    ++V  A+ ++
Sbjct:   353 MNGRIVGSKPLYVALAQRKE 372


>WB|WBGene00004723 [details] [associations]
            symbol:sap-49 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
            "embryo development ending in birth or egg hatching" evidence=IMP]
            [GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
            [GO:0040011 "locomotion" evidence=IMP] [GO:0000003 "reproduction"
            evidence=IMP] [GO:0042127 "regulation of cell proliferation"
            evidence=IMP] [GO:0040020 "regulation of meiosis" evidence=IMP]
            [GO:0040022 "feminization of hermaphroditic germ-line"
            evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0009792 GO:GO:0008380 GO:GO:0000166
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0005681
            GO:GO:0003723 GO:GO:0042127 GO:GO:0040035 GO:GO:0007281 EMBL:Z46676
            GO:GO:0040020 NextBio:883379 GO:GO:0040022 eggNOG:COG0724
            GeneTree:ENSGT00690000101901 PIR:T19069 RefSeq:NP_001021932.1
            ProteinModelPortal:Q09442 SMR:Q09442 IntAct:Q09442 STRING:Q09442
            PaxDb:Q09442 EnsemblMetazoa:C08B11.5.1 EnsemblMetazoa:C08B11.5.2
            GeneID:4363023 KEGG:cel:CELE_C08B11.5 UCSC:C08B11.5.1 CTD:4363023
            WormBase:C08B11.5 InParanoid:Q09442 OMA:VSETLLW ArrayExpress:Q09442
            Uniprot:Q09442
        Length = 388

 Score = 164 (62.8 bits), Expect = 1.5e-11, P = 1.5e-11
 Identities = 35/80 (43%), Positives = 50/80 (62%)

Query:    39 NLFVSGLSKRTTDETLRDTFSAFGEVVHA-KIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
             N+FV  L     ++ L DTFSAFG ++   KI++  +SG SKGF F+ +A+ EA+  A+E
Sbjct:   101 NIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALE 160

Query:    98 GMDGKFLDGWVIFVEYAKPR 117
              M+G+FL    I V YA  R
Sbjct:   161 AMNGQFLCNRAITVSYAFKR 180


>UNIPROTKB|Q09442 [details] [associations]
            symbol:sap-49 "Splicing factor 3B subunit 4" species:6239
            "Caenorhabditis elegans" [GO:0005515 "protein binding"
            evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0008380
            GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0040011
            GO:GO:0005681 GO:GO:0003723 GO:GO:0042127 GO:GO:0040035
            GO:GO:0007281 EMBL:Z46676 GO:GO:0040020 NextBio:883379
            GO:GO:0040022 eggNOG:COG0724 GeneTree:ENSGT00690000101901
            PIR:T19069 RefSeq:NP_001021932.1 ProteinModelPortal:Q09442
            SMR:Q09442 IntAct:Q09442 STRING:Q09442 PaxDb:Q09442
            EnsemblMetazoa:C08B11.5.1 EnsemblMetazoa:C08B11.5.2 GeneID:4363023
            KEGG:cel:CELE_C08B11.5 UCSC:C08B11.5.1 CTD:4363023
            WormBase:C08B11.5 InParanoid:Q09442 OMA:VSETLLW ArrayExpress:Q09442
            Uniprot:Q09442
        Length = 388

 Score = 164 (62.8 bits), Expect = 1.5e-11, P = 1.5e-11
 Identities = 35/80 (43%), Positives = 50/80 (62%)

Query:    39 NLFVSGLSKRTTDETLRDTFSAFGEVVHA-KIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
             N+FV  L     ++ L DTFSAFG ++   KI++  +SG SKGF F+ +A+ EA+  A+E
Sbjct:   101 NIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALE 160

Query:    98 GMDGKFLDGWVIFVEYAKPR 117
              M+G+FL    I V YA  R
Sbjct:   161 AMNGQFLCNRAITVSYAFKR 180


>UNIPROTKB|Q5JQF3 [details] [associations]
            symbol:PABPC5 "Polyadenylate-binding protein 5"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            HOVERGEN:HBG002295 EMBL:AL662874 UniGene:Hs.246590 HGNC:HGNC:13629
            IPI:IPI00647470 SMR:Q5JQF3 STRING:Q5JQF3 Ensembl:ENST00000373105
            HOGENOM:HOG000138175 OrthoDB:EOG4X3H3C Uniprot:Q5JQF3
        Length = 218

 Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
 Identities = 33/80 (41%), Positives = 49/80 (61%)

Query:    38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
             TN+FV  +     DE L++ F  +G     K+++   SG SKGFGFV+Y T EAA KA+ 
Sbjct:    35 TNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVL 93

Query:    98 GMDGKFLDGWVIFVEYAKPR 117
              + GK +DG V++V  A+ +
Sbjct:    94 DLHGKSIDGKVLYVGRAQKK 113

 Score = 131 (51.2 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 29/93 (31%), Positives = 50/93 (53%)

Query:    26 LNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVK 85
             L    RP   P   +++  L +   DE L++ FS+FG +  AK++   E G  KGFG V 
Sbjct:   129 LKEKSRP---PGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMM--EVGQGKGFGVVC 183

Query:    86 YATLEAAGKAIEGMDGKFLDGWVIFVEYAKPRQ 118
             +++ E A KA++ M+G+ +    + V   + R+
Sbjct:   184 FSSFEEATKAVDEMNGRIVGSKPLHVTLGQARR 216


>UNIPROTKB|H0Y5F5 [details] [associations]
            symbol:PABPC4 "Polyadenylate-binding protein 4"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            EMBL:AL365277 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
            Ensembl:ENST00000421687 Uniprot:H0Y5F5
        Length = 550

 Score = 166 (63.5 bits), Expect = 1.8e-11, P = 1.8e-11
 Identities = 33/85 (38%), Positives = 54/85 (63%)

Query:    33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
             +A+  TN+++    +   DE+L++ FS FG+ +  K+++   +G SKGFGFV Y   E A
Sbjct:    88 KAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHEDA 146

Query:    93 GKAIEGMDGKFLDGWVIFVEYAKPR 117
              KA+E M+GK + G +IFV  A+ +
Sbjct:   147 NKAVEEMNGKEISGKIIFVGRAQKK 171

 Score = 155 (59.6 bits), Expect = 2.8e-10, P = 2.8e-10
 Identities = 36/80 (45%), Positives = 50/80 (62%)

Query:    39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
             N+F+  L K   ++ L DTFSAFG ++  K+V   E+G SKG+ FV + T EAA KAIE 
Sbjct:     2 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEK 59

Query:    99 MDGKFLDGWVIFVEYAKPRQ 118
             M+G  L+   +FV   K R+
Sbjct:    60 MNGMLLNDRKVFVGRFKSRK 79

 Score = 139 (54.0 bits), Expect = 1.5e-08, P = 1.5e-08
 Identities = 30/80 (37%), Positives = 47/80 (58%)

Query:    39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
             NL++  L     DE LR  FS FG +  AK++   E G SKGFGFV +++ E A KA+  
Sbjct:   197 NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTE 254

Query:    99 MDGKFLDGWVIFVEYAKPRQ 118
             M+G+ +    ++V  A+ ++
Sbjct:   255 MNGRIVGSKPLYVALAQRKE 274


>MGI|MGI:1100851 [details] [associations]
            symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision)-like
            1 (Hu antigen R)" species:10090 "Mus musculus" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=ISO] [GO:0005634
            "nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO]
            [GO:0006417 "regulation of translation" evidence=ISO] [GO:0017091
            "AU-rich element binding" evidence=ISO] [GO:0019901 "protein kinase
            binding" evidence=ISO] [GO:0035925 "mRNA 3'-UTR AU-rich region
            binding" evidence=ISO] [GO:0045727 "positive regulation of
            translation" evidence=ISO;IMP;IDA] [GO:0048255 "mRNA stabilization"
            evidence=ISO;IMP] [GO:0070935 "3'-UTR-mediated mRNA stabilization"
            evidence=ISO] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
            PROSITE:PS50102 SMART:SM00360 MGI:MGI:1100851 GO:GO:0005634
            GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
            GO:GO:0045727 EMBL:CH466566 eggNOG:COG0724 GO:GO:0070935
            HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
            OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:U65735 EMBL:AK080365
            EMBL:U17595 IPI:IPI00108271 PIR:I49144 RefSeq:NP_034615.2
            UniGene:Mm.119162 HSSP:P26378 ProteinModelPortal:P70372 SMR:P70372
            DIP:DIP-46480N MINT:MINT-4094207 STRING:P70372 PhosphoSite:P70372
            PaxDb:P70372 PRIDE:P70372 Ensembl:ENSMUST00000098950 GeneID:15568
            KEGG:mmu:15568 GeneTree:ENSGT00560000077064 InParanoid:P70372
            OMA:YANRACA ChiTaRS:ELAVL1 NextBio:288542 Bgee:P70372
            Genevestigator:P70372 GermOnline:ENSMUSG00000040028 Uniprot:P70372
        Length = 326

 Score = 161 (61.7 bits), Expect = 2.1e-11, P = 2.1e-11
 Identities = 34/79 (43%), Positives = 49/79 (62%)

Query:    38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
             TNL V+ L +  T E LR  FS+ GEV  AK+++ + +G+S G+GFV Y T + A +AI 
Sbjct:    20 TNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIS 79

Query:    98 GMDGKFLDGWVIFVEYAKP 116
              ++G  L    I V YA+P
Sbjct:    80 TLNGLRLQSKTIKVSYARP 98

 Score = 121 (47.7 bits), Expect = 5.4e-07, P = 5.4e-07
 Identities = 28/98 (28%), Positives = 52/98 (53%)

Query:     6 AVAAPRGLRRLFSTSPFSSSLNPPQRPQAE--PSTNLFVSGLSKRTTDETLRDTFSAFGE 63
             A++   GLR    T   S +     RP +E     NL++SGL +  T + + D FS FG 
Sbjct:    77 AISTLNGLRLQSKTIKVSYA-----RPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGR 131

Query:    64 VVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDG 101
             +++++++  + +G S+G  F+++     A +AI   +G
Sbjct:   132 IINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169


>RGD|1308649 [details] [associations]
            symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision,
            Drosophila)-like 1 (Hu antigen R)" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR
            binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;ISO]
            [GO:0005737 "cytoplasm" evidence=ISO] [GO:0006417 "regulation of
            translation" evidence=ISO] [GO:0017091 "AU-rich element binding"
            evidence=ISO] [GO:0019901 "protein kinase binding" evidence=ISO]
            [GO:0035925 "mRNA 3'-UTR AU-rich region binding" evidence=ISO]
            [GO:0045727 "positive regulation of translation" evidence=IEA;ISO]
            [GO:0048255 "mRNA stabilization" evidence=ISO] [GO:0070935
            "3'-UTR-mediated mRNA stabilization" evidence=ISO]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 RGD:1308649 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003730 eggNOG:COG0724 HOVERGEN:HBG002295 CTD:1994
            HOGENOM:HOG000231162 KO:K13088 OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:CH474084
            EMBL:BC168972 EMBL:AB212679 IPI:IPI00869767 RefSeq:NP_001102318.1
            UniGene:Rn.216517 SMR:B5DF91 STRING:B5DF91
            Ensembl:ENSRNOT00000001415 GeneID:363854 KEGG:rno:363854
            UCSC:RGD:1308649 NextBio:684342 Genevestigator:B5DF91
            Uniprot:B5DF91
        Length = 326

 Score = 161 (61.7 bits), Expect = 2.1e-11, P = 2.1e-11
 Identities = 34/79 (43%), Positives = 49/79 (62%)

Query:    38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
             TNL V+ L +  T E LR  FS+ GEV  AK+++ + +G+S G+GFV Y T + A +AI 
Sbjct:    20 TNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIS 79

Query:    98 GMDGKFLDGWVIFVEYAKP 116
              ++G  L    I V YA+P
Sbjct:    80 TLNGLRLQSKTIKVSYARP 98

 Score = 121 (47.7 bits), Expect = 5.4e-07, P = 5.4e-07
 Identities = 28/98 (28%), Positives = 52/98 (53%)

Query:     6 AVAAPRGLRRLFSTSPFSSSLNPPQRPQAE--PSTNLFVSGLSKRTTDETLRDTFSAFGE 63
             A++   GLR    T   S +     RP +E     NL++SGL +  T + + D FS FG 
Sbjct:    77 AISTLNGLRLQSKTIKVSYA-----RPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGR 131

Query:    64 VVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDG 101
             +++++++  + +G S+G  F+++     A +AI   +G
Sbjct:   132 IINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169


>UNIPROTKB|I3L5X7 [details] [associations]
            symbol:RBM3 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
            EMBL:FP325173 RefSeq:NP_001230348.1 UniGene:Ssc.3311
            Ensembl:ENSSSCT00000030983 GeneID:100627807 KEGG:ssc:100627807
            Uniprot:I3L5X7
        Length = 156

 Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
 Identities = 32/75 (42%), Positives = 47/75 (62%)

Query:    40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
             LFV GL+  T ++ L D FS+FG +    +VK RE+  S+GFGF+ +   E A  A+  M
Sbjct:     8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRAM 67

Query:   100 DGKFLDGWVIFVEYA 114
             +G+ LDG  I V++A
Sbjct:    68 NGESLDGRQIRVDHA 82


>TAIR|locus:2179624 [details] [associations]
            symbol:AT5G19030 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005739 "mitochondrion" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 EMBL:CP002688 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00544212 RefSeq:NP_197404.2
            UniGene:At.31343 ProteinModelPortal:F4JZK9 SMR:F4JZK9
            EnsemblPlants:AT5G19030.1 GeneID:832022 KEGG:ath:AT5G19030
            OMA:RTISCVA PhylomeDB:F4JZK9 Uniprot:F4JZK9
        Length = 172

 Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
 Identities = 30/79 (37%), Positives = 49/79 (62%)

Query:    38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
             ++LFV G S   ++  L+  FS FG+V + KI+ +  +  S G+G+V + + E A  A+E
Sbjct:    77 SSLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVE 136

Query:    98 GMDGKFLDGWVIFVEYAKP 116
              M+GKF DG  I V++ +P
Sbjct:   137 AMNGKFFDGRFILVKFGQP 155


>UNIPROTKB|B1ANR0 [details] [associations]
            symbol:PABPC4 "Polyadenylate-binding protein 4"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0000166
            EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL365277
            HOVERGEN:HBG002295 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AL845289
            UniGene:Hs.169900 HGNC:HGNC:8557 ChiTaRS:PABPC4 IPI:IPI00642944
            SMR:B1ANR0 STRING:B1ANR0 Ensembl:ENST00000372862 Uniprot:B1ANR0
        Length = 615

 Score = 166 (63.5 bits), Expect = 2.2e-11, P = 2.2e-11
 Identities = 33/85 (38%), Positives = 54/85 (63%)

Query:    33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
             +A+  TN+++    +   DE+L++ FS FG+ +  K+++   +G SKGFGFV Y   E A
Sbjct:   186 KAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHEDA 244

Query:    93 GKAIEGMDGKFLDGWVIFVEYAKPR 117
              KA+E M+GK + G +IFV  A+ +
Sbjct:   245 NKAVEEMNGKEISGKIIFVGRAQKK 269

 Score = 156 (60.0 bits), Expect = 2.6e-10, P = 2.6e-10
 Identities = 45/118 (38%), Positives = 60/118 (50%)

Query:    10 PRGLRRLFSTSPFSSSLNPPQR---PQAEPST------NLFVSGLSKRTTDETLRDTFSA 60
             P    R   T  F      P R    Q +PS       N+F+  L K   ++ L DTFSA
Sbjct:    62 PADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 121

Query:    61 FGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKPRQ 118
             FG ++  K+V   E+G SKG+ FV + T EAA KAIE M+G  L+   +FV   K R+
Sbjct:   122 FGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177

 Score = 139 (54.0 bits), Expect = 1.8e-08, P = 1.8e-08
 Identities = 30/80 (37%), Positives = 47/80 (58%)

Query:    39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
             NL++  L     DE LR  FS FG +  AK++   E G SKGFGFV +++ E A KA+  
Sbjct:   295 NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTE 352

Query:    99 MDGKFLDGWVIFVEYAKPRQ 118
             M+G+ +    ++V  A+ ++
Sbjct:   353 MNGRIVGSKPLYVALAQRKE 372


>POMBASE|SPAC31G5.01 [details] [associations]
            symbol:sap49 "U2 snRNP-associated RNA-binding protein
            Sap49" species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA
            binding" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005686 "U2 snRNP" evidence=ISO] [GO:0005829 "cytosol"
            evidence=IDA] [GO:0045292 "mRNA cis splicing, via spliceosome"
            evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 PomBase:SPAC31G5.01 GO:GO:0005829
            EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0005686 GO:GO:0045292
            eggNOG:NOG282907 HOGENOM:HOG000200535 KO:K12831 OrthoDB:EOG4Q886Z
            RefSeq:NP_594001.2 ProteinModelPortal:O14102 SMR:O14102
            IntAct:O14102 STRING:O14102 EnsemblFungi:SPAC31G5.01.1
            GeneID:2542426 KEGG:spo:SPAC31G5.01 OMA:QVARDEN NextBio:20803483
            Uniprot:O14102
        Length = 335

 Score = 161 (61.7 bits), Expect = 2.2e-11, P = 2.2e-11
 Identities = 37/80 (46%), Positives = 46/80 (57%)

Query:    39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
             NLFV  L     +  L DTFSA G++V A  V   E+G SKG+GFV Y + E A  AIE 
Sbjct:   100 NLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEA 159

Query:    99 MDGKFLDGWVIFVEYAKPRQ 118
             M+ +FL    I V YA  R+
Sbjct:   160 MNNQFLMNKPITVSYAFKRE 179


>UNIPROTKB|P0CB38 [details] [associations]
            symbol:PABPC4L "Polyadenylate-binding protein 4-like"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01628 EMBL:AC015631
            EMBL:BX648831 IPI:IPI00885166 UniGene:Hs.49889
            ProteinModelPortal:P0CB38 SMR:P0CB38 PhosphoSite:P0CB38
            DMDM:259515737 PaxDb:P0CB38 PRIDE:P0CB38 Ensembl:ENST00000421491
            UCSC:uc010ioe.3 GeneCards:GC04M135117 HGNC:HGNC:31955
            neXtProt:NX_P0CB38 eggNOG:NOG246493 OrthoDB:EOG4M398T NextBio:83098
            Bgee:P0CB38 Genevestigator:P0CB38 Uniprot:P0CB38
        Length = 370

 Score = 162 (62.1 bits), Expect = 2.3e-11, P = 2.3e-11
 Identities = 34/87 (39%), Positives = 54/87 (62%)

Query:    31 RPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLE 90
             R +A   TN+++        DE L+D FS +G+ +  K++    SG SKGFGFV + + E
Sbjct:   183 RSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTD-SSGKSKGFGFVSFDSHE 241

Query:    91 AAGKAIEGMDGKFLDGWVIFVEYAKPR 117
             AA KA+E M+G+ ++G +IFV  A+ +
Sbjct:   242 AAKKAVEEMNGRDINGQLIFVGRAQKK 268

 Score = 145 (56.1 bits), Expect = 1.7e-09, P = 1.7e-09
 Identities = 32/80 (40%), Positives = 50/80 (62%)

Query:    39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
             N+F+  L K   ++TL + FSAFG+++ +K++   + G SKG+ FV +    AA +AIE 
Sbjct:    99 NVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSD-DQG-SKGYAFVHFQNQSAADRAIEE 156

Query:    99 MDGKFLDGWVIFVEYAKPRQ 118
             M+GK L G  +FV   K R+
Sbjct:   157 MNGKLLKGCKVFVGRFKNRK 176

 Score = 121 (47.7 bits), Expect = 6.8e-07, P = 6.8e-07
 Identities = 25/65 (38%), Positives = 40/65 (61%)

Query:    40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
             L++  L     DE LR+ FS+FG +   K+++  E G SKGFG + +++ E A KA+  M
Sbjct:   295 LYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQ--EEGQSKGFGLICFSSPEDATKAMTEM 352

Query:   100 DGKFL 104
             +G+ L
Sbjct:   353 NGRIL 357


>UNIPROTKB|Q13310 [details] [associations]
            symbol:PABPC4 "Polyadenylate-binding protein 4"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
            evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
            [GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0010494
            "cytoplasmic stress granule" evidence=IDA] [GO:0017130 "poly(C) RNA
            binding" evidence=IDA] [GO:0006401 "RNA catabolic process"
            evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
            [GO:0006412 "translation" evidence=TAS] [GO:0007596 "blood
            coagulation" evidence=TAS] [GO:0005515 "protein binding"
            evidence=IPI] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 EMBL:CH471059
            GO:GO:0006412 GO:GO:0007596 Gene3D:3.30.70.330 GO:GO:0006401
            GO:GO:0006396 GO:GO:0010494 EMBL:AL365277 eggNOG:COG0724
            GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
            SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:U33818
            EMBL:U75686 EMBL:AL845289 EMBL:BC065540 EMBL:BC094755
            IPI:IPI00012726 IPI:IPI00555747 IPI:IPI00642904
            RefSeq:NP_001129125.1 RefSeq:NP_001129126.1 RefSeq:NP_003810.1
            UniGene:Hs.169900 ProteinModelPortal:Q13310 SMR:Q13310
            IntAct:Q13310 MINT:MINT-1189867 STRING:Q13310 PhosphoSite:Q13310
            DMDM:12229875 PaxDb:Q13310 PRIDE:Q13310 Ensembl:ENST00000372856
            Ensembl:ENST00000372857 Ensembl:ENST00000372858 GeneID:8761
            KEGG:hsa:8761 UCSC:uc001cdm.2 UCSC:uc010oiv.1 CTD:8761
            GeneCards:GC01M040026 HGNC:HGNC:8557 HPA:HPA027301 MIM:603407
            neXtProt:NX_Q13310 PharmGKB:PA32883 OMA:XVVCDEN OrthoDB:EOG4T1HM1
            PhylomeDB:Q13310 ChEMBL:CHEMBL5333 ChiTaRS:PABPC4 GenomeRNAi:8761
            NextBio:32864 ArrayExpress:Q13310 Bgee:Q13310 CleanEx:HS_PABPC4
            Genevestigator:Q13310 GermOnline:ENSG00000090621 Uniprot:Q13310
        Length = 644

 Score = 166 (63.5 bits), Expect = 2.4e-11, P = 2.4e-11
 Identities = 33/85 (38%), Positives = 54/85 (63%)

Query:    33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
             +A+  TN+++    +   DE+L++ FS FG+ +  K+++   +G SKGFGFV Y   E A
Sbjct:   186 KAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHEDA 244

Query:    93 GKAIEGMDGKFLDGWVIFVEYAKPR 117
              KA+E M+GK + G +IFV  A+ +
Sbjct:   245 NKAVEEMNGKEISGKIIFVGRAQKK 269

 Score = 156 (60.0 bits), Expect = 2.8e-10, P = 2.8e-10
 Identities = 45/118 (38%), Positives = 60/118 (50%)

Query:    10 PRGLRRLFSTSPFSSSLNPPQR---PQAEPST------NLFVSGLSKRTTDETLRDTFSA 60
             P    R   T  F      P R    Q +PS       N+F+  L K   ++ L DTFSA
Sbjct:    62 PADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 121

Query:    61 FGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKPRQ 118
             FG ++  K+V   E+G SKG+ FV + T EAA KAIE M+G  L+   +FV   K R+
Sbjct:   122 FGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177

 Score = 139 (54.0 bits), Expect = 1.9e-08, P = 1.9e-08
 Identities = 30/80 (37%), Positives = 47/80 (58%)

Query:    39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
             NL++  L     DE LR  FS FG +  AK++   E G SKGFGFV +++ E A KA+  
Sbjct:   295 NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTE 352

Query:    99 MDGKFLDGWVIFVEYAKPRQ 118
             M+G+ +    ++V  A+ ++
Sbjct:   353 MNGRIVGSKPLYVALAQRKE 372


>UNIPROTKB|D3K5N7 [details] [associations]
            symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
            Drosophila)-like 1" species:9823 "Sus scrofa" [GO:0070935
            "3'-UTR-mediated mRNA stabilization" evidence=IEA] [GO:0045727
            "positive regulation of translation" evidence=IEA] [GO:0019901
            "protein kinase binding" evidence=IEA] [GO:0017091 "AU-rich element
            binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727
            GO:GO:0070935 CTD:1994 KO:K13088 OrthoDB:EOG4Z8XWZ
            TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
            EMBL:CU929699 EMBL:GU373715 RefSeq:NP_001182263.1 UniGene:Ssc.4516
            ProteinModelPortal:D3K5N7 Ensembl:ENSSSCT00000014844
            GeneID:100337681 KEGG:ssc:100337681 Uniprot:D3K5N7
        Length = 326

 Score = 160 (61.4 bits), Expect = 2.7e-11, P = 2.7e-11
 Identities = 33/79 (41%), Positives = 49/79 (62%)

Query:    38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
             TNL V+ L +  T E LR  FS+ GE+  AK+++ + +G+S G+GFV Y T + A +AI 
Sbjct:    20 TNLIVNYLPQNMTQEELRSLFSSIGEIESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIN 79

Query:    98 GMDGKFLDGWVIFVEYAKP 116
              ++G  L    I V YA+P
Sbjct:    80 TLNGLRLQSKTIKVSYARP 98

 Score = 120 (47.3 bits), Expect = 6.9e-07, P = 6.9e-07
 Identities = 22/73 (30%), Positives = 43/73 (58%)

Query:    31 RPQAE--PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYAT 88
             RP +E     NL++SGL +  T + + D FS FG +++++++  + +G S+G  F+++  
Sbjct:    97 RPSSEVIKDANLYISGLPRTMTQKDVEDMFSPFGRIINSRVLVDQTTGLSRGVAFIRFDK 156

Query:    89 LEAAGKAIEGMDG 101
                A +AI   +G
Sbjct:   157 RSEAEEAITSFNG 169


>MGI|MGI:1099460 [details] [associations]
            symbol:Rbm3 "RNA binding motif protein 3" species:10090 "Mus
            musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
            [GO:0005737 "cytoplasm" evidence=ISO] [GO:0006412 "translation"
            evidence=IDA] [GO:0006417 "regulation of translation" evidence=IDA]
            [GO:0006950 "response to stress" evidence=IEA] [GO:0009409
            "response to cold" evidence=IDA] [GO:0015934 "large ribosomal
            subunit" evidence=ISO] [GO:0030425 "dendrite" evidence=ISO]
            [GO:0035196 "production of miRNAs involved in gene silencing by
            miRNA" evidence=IDA] [GO:0042995 "cell projection" evidence=IEA]
            [GO:0043023 "ribosomal large subunit binding" evidence=IPI]
            [GO:0045727 "positive regulation of translation" evidence=ISO]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 MGI:MGI:1099460 GO:GO:0005634 GO:GO:0005737
            GO:GO:0000166 GO:GO:0006412 GO:GO:0030425 GO:GO:0009409
            Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727 eggNOG:COG0724
            HOVERGEN:HBG107480 HOGENOM:HOG000276232 OrthoDB:EOG4HHP40
            GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186 EMBL:AB016424
            EMBL:AY052560 EMBL:BC006580 IPI:IPI00130883 RefSeq:NP_001159882.1
            RefSeq:NP_001159883.1 UniGene:Mm.128512 UniGene:Mm.360569
            ProteinModelPortal:O89086 SMR:O89086 IntAct:O89086 STRING:O89086
            PhosphoSite:O89086 REPRODUCTION-2DPAGE:IPI00130883 PaxDb:O89086
            PRIDE:O89086 Ensembl:ENSMUST00000115615 Ensembl:ENSMUST00000115619
            Ensembl:ENSMUST00000115621 GeneID:19652 KEGG:mmu:19652
            NextBio:296916 Bgee:O89086 CleanEx:MM_RBM3 Genevestigator:O89086
            GermOnline:ENSMUSG00000031167 Uniprot:O89086
        Length = 153

 Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
 Identities = 32/75 (42%), Positives = 47/75 (62%)

Query:    40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
             LFV GL+  T ++ L D FS+FG +    +VK RE+  S+GFGF+ +   E A  A+  M
Sbjct:     8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAM 67

Query:   100 DGKFLDGWVIFVEYA 114
             +G+ LDG  I V++A
Sbjct:    68 NGESLDGRQIRVDHA 82


>UNIPROTKB|G3V6P6 [details] [associations]
            symbol:Rbm3 "Putative RNA-binding protein 3" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006412
            "translation" evidence=IEA] [GO:0009409 "response to cold"
            evidence=IEA] [GO:0035196 "production of miRNAs involved in gene
            silencing by miRNA" evidence=IEA] [GO:0043023 "ribosomal large
            subunit binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:620145 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
            RefSeq:NP_446148.1 UniGene:Rn.18057 GeneID:114488 KEGG:rno:114488
            NextBio:618509 EMBL:CH474078 Ensembl:ENSRNOT00000007367
            Uniprot:G3V6P6
        Length = 156

 Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
 Identities = 32/75 (42%), Positives = 47/75 (62%)

Query:    40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
             LFV GL+  T ++ L D FS+FG +    +VK RE+  S+GFGF+ +   E A  A+  M
Sbjct:     8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAM 67

Query:   100 DGKFLDGWVIFVEYA 114
             +G+ LDG  I V++A
Sbjct:    68 NGESLDGRQIRVDHA 82


>TAIR|locus:2168133 [details] [associations]
            symbol:AT5G59860 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0000398 "mRNA splicing, via
            spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00539298
            RefSeq:NP_200794.1 UniGene:At.66722 ProteinModelPortal:F4JXD2
            SMR:F4JXD2 EnsemblPlants:AT5G59860.1 GeneID:836108
            KEGG:ath:AT5G59860 Uniprot:F4JXD2
        Length = 157

 Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
 Identities = 33/85 (38%), Positives = 56/85 (65%)

Query:    43 SGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGK 102
             SGLS  TTD++LR  F+ F     A+++K +++   KGFGF+ + + + A KA++ ++GK
Sbjct:    76 SGLSAYTTDQSLRQLFAPF-----ARLIKDQQTQRPKGFGFITFESEDDAQKALKALNGK 130

Query:   103 FLDGWVIFVEYAKPRQPPTLPSQNN 127
              ++G +IFVE AK  + PT   ++N
Sbjct:   131 IVNGRLIFVETAKEVEAPTTSLKSN 155


>UNIPROTKB|J3KTH5 [details] [associations]
            symbol:PABPC4L "Polyadenylate-binding protein 4-like"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126 TIGRFAMs:TIGR01628
            EMBL:AC015631 UniGene:Hs.49889 HGNC:HGNC:31955
            RefSeq:NP_001108206.2 ProteinModelPortal:J3KTH5
            Ensembl:ENST00000529122 GeneID:132430 KEGG:hsa:132430 CTD:132430
            Uniprot:J3KTH5
        Length = 428

 Score = 162 (62.1 bits), Expect = 3.1e-11, P = 3.1e-11
 Identities = 34/87 (39%), Positives = 54/87 (62%)

Query:    31 RPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLE 90
             R +A   TN+++        DE L+D FS +G+ +  K++    SG SKGFGFV + + E
Sbjct:   241 RSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTD-SSGKSKGFGFVSFDSHE 299

Query:    91 AAGKAIEGMDGKFLDGWVIFVEYAKPR 117
             AA KA+E M+G+ ++G +IFV  A+ +
Sbjct:   300 AAKKAVEEMNGRDINGQLIFVGRAQKK 326

 Score = 145 (56.1 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 32/80 (40%), Positives = 50/80 (62%)

Query:    39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
             N+F+  L K   ++TL + FSAFG+++ +K++   + G SKG+ FV +    AA +AIE 
Sbjct:   157 NVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSD-DQG-SKGYAFVHFQNQSAADRAIEE 214

Query:    99 MDGKFLDGWVIFVEYAKPRQ 118
             M+GK L G  +FV   K R+
Sbjct:   215 MNGKLLKGCKVFVGRFKNRK 234

 Score = 121 (47.7 bits), Expect = 8.8e-07, P = 8.8e-07
 Identities = 25/65 (38%), Positives = 40/65 (61%)

Query:    40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
             L++  L     DE LR+ FS+FG +   K+++  E G SKGFG + +++ E A KA+  M
Sbjct:   353 LYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQ--EEGQSKGFGLICFSSPEDATKAMTEM 410

Query:   100 DGKFL 104
             +G+ L
Sbjct:   411 NGRIL 415


>UNIPROTKB|F1P336 [details] [associations]
            symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00550000074656
            EMBL:AADN02020638 EMBL:AADN02020639 IPI:IPI00680028
            Ensembl:ENSGALT00000033265 ArrayExpress:F1P336 Uniprot:F1P336
        Length = 689

 Score = 165 (63.1 bits), Expect = 3.4e-11, P = 3.4e-11
 Identities = 41/107 (38%), Positives = 64/107 (59%)

Query:    11 RGLRRLFSTSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIV 70
             R +R  FS+  +       +    + S  LFV GLS+ TT+ETLR++F   G +  A+IV
Sbjct:   524 RAIRLEFSSPSWQKGNMNARGGFNQQSKTLFVRGLSEDTTEETLRESFE--GSI-SARIV 580

Query:    71 KHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKPR 117
               R++G SKGFGFV +++ E A  A E M+   +DG  + +++AKP+
Sbjct:   581 TDRDTGSSKGFGFVDFSSPEDAKAAKEAMEDGEIDGNKVTLDFAKPK 627

 Score = 99 (39.9 bits), Expect = 0.00040, P = 0.00040
 Identities = 24/74 (32%), Positives = 42/74 (56%)

Query:    40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
             LFV  L  R T++ +++ F    EV   ++V ++E G SKG  ++++ T   A KA+E  
Sbjct:   371 LFVKNLPYRVTEDEMKNVFENALEV---RLVLNKE-GSSKGMAYIEFKTEAEAEKALEEK 426

Query:   100 DGKFLDGWVIFVEY 113
              G  +DG  + ++Y
Sbjct:   427 QGTEVDGRAMVIDY 440


>UNIPROTKB|D4AC21 [details] [associations]
            symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00365233
            ProteinModelPortal:D4AC21 Ensembl:ENSRNOT00000021032
            ArrayExpress:D4AC21 Uniprot:D4AC21
        Length = 588

 Score = 164 (62.8 bits), Expect = 3.4e-11, P = 3.4e-11
 Identities = 35/85 (41%), Positives = 52/85 (61%)

Query:    33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
             +A+  TN+++    +   DE LR+ FS FG+ +  K+++   SG SKGFGFV Y   E A
Sbjct:   115 KAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDC-SGKSKGFGFVSYEKHEDA 173

Query:    93 GKAIEGMDGKFLDGWVIFVEYAKPR 117
              KA+E M+GK + G  IFV  A+ +
Sbjct:   174 NKAVEEMNGKEMSGKSIFVGRAQKK 198

 Score = 156 (60.0 bits), Expect = 2.4e-10, P = 2.4e-10
 Identities = 36/80 (45%), Positives = 50/80 (62%)

Query:    39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
             N+F+  L K   ++ L DTFSAFG ++  K+V   E+G SKG+ FV + T EAA KAIE 
Sbjct:    29 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAANKAIEK 86

Query:    99 MDGKFLDGWVIFVEYAKPRQ 118
             M+G  L+   +FV   K R+
Sbjct:    87 MNGMLLNDRKVFVGRFKSRK 106

 Score = 139 (54.0 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 30/80 (37%), Positives = 47/80 (58%)

Query:    39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
             NL++  L     DE LR  FS FG +  AK++   E G SKGFGFV +++ E A KA+  
Sbjct:   224 NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTE 281

Query:    99 MDGKFLDGWVIFVEYAKPRQ 118
             M+G+ +    ++V  A+ ++
Sbjct:   282 MNGRIVGSKPLYVALAQRKE 301


>UNIPROTKB|F1NU40 [details] [associations]
            symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
            "angiogenesis" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730
            "nucleolus" evidence=IEA] [GO:0005938 "cell cortex" evidence=IEA]
            [GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0030529
            "ribonucleoprotein complex" evidence=IEA] [GO:0042162 "telomeric
            DNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005938
            GO:GO:0005654 GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0042162
            GeneTree:ENSGT00550000074656 IPI:IPI00577202 OMA:ENAMEIR
            EMBL:AADN02020638 EMBL:AADN02020639 Ensembl:ENSGALT00000012486
            ArrayExpress:F1NU40 Uniprot:F1NU40
        Length = 691

 Score = 165 (63.1 bits), Expect = 3.4e-11, P = 3.4e-11
 Identities = 41/107 (38%), Positives = 64/107 (59%)

Query:    11 RGLRRLFSTSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIV 70
             R +R  FS+  +       +    + S  LFV GLS+ TT+ETLR++F   G +  A+IV
Sbjct:   526 RAIRLEFSSPSWQKGNMNARGGFNQQSKTLFVRGLSEDTTEETLRESFE--GSI-SARIV 582

Query:    71 KHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKPR 117
               R++G SKGFGFV +++ E A  A E M+   +DG  + +++AKP+
Sbjct:   583 TDRDTGSSKGFGFVDFSSPEDAKAAKEAMEDGEIDGNKVTLDFAKPK 629

 Score = 99 (39.9 bits), Expect = 0.00040, P = 0.00040
 Identities = 24/74 (32%), Positives = 42/74 (56%)

Query:    40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
             LFV  L  R T++ +++ F    EV   ++V ++E G SKG  ++++ T   A KA+E  
Sbjct:   373 LFVKNLPYRVTEDEMKNVFENALEV---RLVLNKE-GSSKGMAYIEFKTEAEAEKALEEK 428

Query:   100 DGKFLDGWVIFVEY 113
              G  +DG  + ++Y
Sbjct:   429 QGTEVDGRAMVIDY 442


>UNIPROTKB|P15771 [details] [associations]
            symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
            binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005730 "nucleolus" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0000166
            GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
            HOVERGEN:HBG002295 KO:K11294 EMBL:X17199 EMBL:M21791
            IPI:IPI00577202 PIR:S08414 RefSeq:NP_990596.1 UniGene:Gga.3663
            ProteinModelPortal:P15771 SMR:P15771 STRING:P15771 PRIDE:P15771
            GeneID:396201 KEGG:gga:396201 CTD:4691 HOGENOM:HOG000113885
            InParanoid:P15771 NextBio:20816253 Uniprot:P15771
        Length = 694

 Score = 165 (63.1 bits), Expect = 3.4e-11, P = 3.4e-11
 Identities = 41/107 (38%), Positives = 64/107 (59%)

Query:    11 RGLRRLFSTSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIV 70
             R +R  FS+  +       +    + S  LFV GLS+ TT+ETLR++F   G +  A+IV
Sbjct:   526 RAIRLEFSSPSWQKGNMNARGGFNQQSKTLFVRGLSEDTTEETLRESFE--GSI-SARIV 582

Query:    71 KHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKPR 117
               R++G SKGFGFV +++ E A  A E M+   +DG  + +++AKP+
Sbjct:   583 TDRDTGSSKGFGFVDFSSPEDAKAAKEAMEDGEIDGNKVTLDFAKPK 629

 Score = 99 (39.9 bits), Expect = 0.00040, P = 0.00040
 Identities = 24/74 (32%), Positives = 42/74 (56%)

Query:    40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
             LFV  L  R T++ +++ F    EV   ++V ++E G SKG  ++++ T   A KA+E  
Sbjct:   373 LFVKNLPYRVTEDEMKNVFENALEV---RLVLNKE-GSSKGMAYIEFKTEAEAEKALEEK 428

Query:   100 DGKFLDGWVIFVEY 113
              G  +DG  + ++Y
Sbjct:   429 QGTEVDGRAMVIDY 442


>UNIPROTKB|F6RBQ9 [details] [associations]
            symbol:F6RBQ9 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0043023 "ribosomal large subunit binding" evidence=IEA]
            [GO:0035196 "production of miRNAs involved in gene silencing by
            miRNA" evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
            [GO:0006412 "translation" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0006412
            GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 GO:GO:0035196 GO:GO:0043023
            OMA:SDAMRAM EMBL:DAAA02073061 IPI:IPI00691523
            Ensembl:ENSBTAT00000024034 Uniprot:F6RBQ9
        Length = 160

 Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 32/75 (42%), Positives = 46/75 (61%)

Query:    40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
             LFV GL+  T +  L D FS+FG +    +VK RE+  S+GFGF+ +   E A  A+  M
Sbjct:     8 LFVGGLNFNTDERALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRAM 67

Query:   100 DGKFLDGWVIFVEYA 114
             +G+ LDG  I V++A
Sbjct:    68 NGESLDGRQIRVDHA 82


>UNIPROTKB|P98179 [details] [associations]
            symbol:RBM3 "Putative RNA-binding protein 3" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0006412 "translation"
            evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
            [GO:0035196 "production of miRNAs involved in gene silencing by
            miRNA" evidence=IEA] [GO:0043023 "ribosomal large subunit binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=ISS] [GO:0030425
            "dendrite" evidence=ISS] [GO:0006417 "regulation of translation"
            evidence=ISS] [GO:0045727 "positive regulation of translation"
            evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0015934
            "large ribosomal subunit" evidence=ISS] [GO:0006396 "RNA
            processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
            GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396
            GO:GO:0045727 eggNOG:COG0724 GO:GO:0015934 HOVERGEN:HBG107480
            HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GO:GO:0035196 EMBL:AF196969
            GO:GO:0043023 EMBL:U28686 EMBL:BC006825 IPI:IPI00024320 PIR:G01859
            RefSeq:NP_006734.1 UniGene:Hs.301404 ProteinModelPortal:P98179
            SMR:P98179 IntAct:P98179 MINT:MINT-5002714 STRING:P98179
            PhosphoSite:P98179 DMDM:1710620 PaxDb:P98179 PeptideAtlas:P98179
            PRIDE:P98179 DNASU:5935 Ensembl:ENST00000376755
            Ensembl:ENST00000376759 GeneID:5935 KEGG:hsa:5935 UCSC:uc004dkf.2
            CTD:5935 GeneCards:GC0XP048432 HGNC:HGNC:9900 HPA:HPA003624
            MIM:300027 neXtProt:NX_P98179 PharmGKB:PA34265 InParanoid:P98179
            KO:K13186 OMA:SDAMRAM PhylomeDB:P98179 ChiTaRS:RBM3 GenomeRNAi:5935
            NextBio:23136 ArrayExpress:P98179 Bgee:P98179 CleanEx:HS_RBM3
            Genevestigator:P98179 GermOnline:ENSG00000102317 Uniprot:P98179
        Length = 157

 Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 32/75 (42%), Positives = 47/75 (62%)

Query:    40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
             LFV GL+  T ++ L D FS+FG +    +VK RE+  S+GFGF+ +   E A  A+  M
Sbjct:     8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAM 67

Query:   100 DGKFLDGWVIFVEYA 114
             +G+ LDG  I V++A
Sbjct:    68 NGESLDGRQIRVDHA 82


>UNIPROTKB|D4AC14 [details] [associations]
            symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00204295 PRIDE:D4AC14
            Ensembl:ENSRNOT00000021045 ArrayExpress:D4AC14 Uniprot:D4AC14
        Length = 631

 Score = 164 (62.8 bits), Expect = 3.8e-11, P = 3.8e-11
 Identities = 35/85 (41%), Positives = 52/85 (61%)

Query:    33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
             +A+  TN+++    +   DE LR+ FS FG+ +  K+++   SG SKGFGFV Y   E A
Sbjct:   186 KAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDC-SGKSKGFGFVSYEKHEDA 244

Query:    93 GKAIEGMDGKFLDGWVIFVEYAKPR 117
              KA+E M+GK + G  IFV  A+ +
Sbjct:   245 NKAVEEMNGKEMSGKSIFVGRAQKK 269

 Score = 157 (60.3 bits), Expect = 2.1e-10, P = 2.1e-10
 Identities = 45/118 (38%), Positives = 60/118 (50%)

Query:    10 PRGLRRLFSTSPFSSSLNPPQR---PQAEPST------NLFVSGLSKRTTDETLRDTFSA 60
             P    R   T  F      P R    Q +PS       N+F+  L K   ++ L DTFSA
Sbjct:    62 PADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 121

Query:    61 FGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKPRQ 118
             FG ++  K+V   E+G SKG+ FV + T EAA KAIE M+G  L+   +FV   K R+
Sbjct:   122 FGNILSCKVVCD-ENG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRK 177

 Score = 139 (54.0 bits), Expect = 1.8e-08, P = 1.8e-08
 Identities = 30/80 (37%), Positives = 47/80 (58%)

Query:    39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
             NL++  L     DE LR  FS FG +  AK++   E G SKGFGFV +++ E A KA+  
Sbjct:   295 NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTE 352

Query:    99 MDGKFLDGWVIFVEYAKPRQ 118
             M+G+ +    ++V  A+ ++
Sbjct:   353 MNGRIVGSKPLYVALAQRKE 372


>UNIPROTKB|G3V9N0 [details] [associations]
            symbol:Pabpc4 "RCG31475, isoform CRA_a" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 EMBL:CH473968 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 EMBL:AC114512 GeneTree:ENSGT00640000091232
            OMA:XVVCDEN PRIDE:G3V9N0 Ensembl:ENSRNOT00000056592 Uniprot:G3V9N0
        Length = 660

 Score = 164 (62.8 bits), Expect = 4.0e-11, P = 4.0e-11
 Identities = 35/85 (41%), Positives = 52/85 (61%)

Query:    33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
             +A+  TN+++    +   DE LR+ FS FG+ +  K+++   SG SKGFGFV Y   E A
Sbjct:   186 KAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDC-SGKSKGFGFVSYEKHEDA 244

Query:    93 GKAIEGMDGKFLDGWVIFVEYAKPR 117
              KA+E M+GK + G  IFV  A+ +
Sbjct:   245 NKAVEEMNGKEMSGKSIFVGRAQKK 269

 Score = 157 (60.3 bits), Expect = 2.3e-10, P = 2.3e-10
 Identities = 45/118 (38%), Positives = 60/118 (50%)

Query:    10 PRGLRRLFSTSPFSSSLNPPQR---PQAEPST------NLFVSGLSKRTTDETLRDTFSA 60
             P    R   T  F      P R    Q +PS       N+F+  L K   ++ L DTFSA
Sbjct:    62 PADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 121

Query:    61 FGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKPRQ 118
             FG ++  K+V   E+G SKG+ FV + T EAA KAIE M+G  L+   +FV   K R+
Sbjct:   122 FGNILSCKVVCD-ENG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRK 177

 Score = 139 (54.0 bits), Expect = 1.9e-08, P = 1.9e-08
 Identities = 30/80 (37%), Positives = 47/80 (58%)

Query:    39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
             NL++  L     DE LR  FS FG +  AK++   E G SKGFGFV +++ E A KA+  
Sbjct:   295 NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTE 352

Query:    99 MDGKFLDGWVIFVEYAKPRQ 118
             M+G+ +    ++V  A+ ++
Sbjct:   353 MNGRIVGSKPLYVALAQRKE 372


>UNIPROTKB|Q3ZCE2 [details] [associations]
            symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
            Drosophila)-like 1 (Hu antigen R)" species:9913 "Bos taurus"
            [GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
            [GO:0045727 "positive regulation of translation" evidence=IEA]
            [GO:0019901 "protein kinase binding" evidence=IEA] [GO:0017091
            "AU-rich element binding" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0017091 GO:GO:0045727 eggNOG:COG0724 GO:GO:0070935
            HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
            OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064
            OMA:RFGGPLH EMBL:DAAA02019508 EMBL:DAAA02019509 EMBL:BC102495
            IPI:IPI00703347 RefSeq:NP_001069922.1 UniGene:Bt.49576 SMR:Q3ZCE2
            STRING:Q3ZCE2 Ensembl:ENSBTAT00000000805 GeneID:617316
            KEGG:bta:617316 InParanoid:Q3ZCE2 NextBio:20900599 Uniprot:Q3ZCE2
        Length = 326

 Score = 158 (60.7 bits), Expect = 4.4e-11, P = 4.4e-11
 Identities = 33/79 (41%), Positives = 49/79 (62%)

Query:    38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
             TNL V+ L +  T + LR  FS+ GEV  AK+++ + +G+S G+GFV Y T + A +AI 
Sbjct:    20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIN 79

Query:    98 GMDGKFLDGWVIFVEYAKP 116
              ++G  L    I V YA+P
Sbjct:    80 TLNGLRLQSKTIKVSYARP 98

 Score = 121 (47.7 bits), Expect = 5.4e-07, P = 5.4e-07
 Identities = 22/73 (30%), Positives = 43/73 (58%)

Query:    31 RPQAE--PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYAT 88
             RP +E     NL++SGL +  T + + D FS FG +++++++  + +G S+G  F+++  
Sbjct:    97 RPSSEVIKDANLYISGLPRNMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDK 156

Query:    89 LEAAGKAIEGMDG 101
                A +AI   +G
Sbjct:   157 RSEAEEAITSFNG 169


>UNIPROTKB|F1N9I5 [details] [associations]
            symbol:ELAVL1 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
            [GO:0019901 "protein kinase binding" evidence=IEA] [GO:0045727
            "positive regulation of translation" evidence=IEA] [GO:0070935
            "3'-UTR-mediated mRNA stabilization" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727 GO:GO:0070935
            TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
            EMBL:AADN02063542 IPI:IPI00590347 ProteinModelPortal:F1N9I5
            Ensembl:ENSGALT00000001029 Uniprot:F1N9I5
        Length = 326

 Score = 158 (60.7 bits), Expect = 4.4e-11, P = 4.4e-11
 Identities = 33/79 (41%), Positives = 49/79 (62%)

Query:    38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
             TNL V+ L +  T + LR  FS+ GEV  AK+++ + +G+S G+GFV Y T + A +AI 
Sbjct:    20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIN 79

Query:    98 GMDGKFLDGWVIFVEYAKP 116
              ++G  L    I V YA+P
Sbjct:    80 TLNGLRLQSKTIKVSYARP 98

 Score = 120 (47.3 bits), Expect = 6.9e-07, P = 6.9e-07
 Identities = 22/73 (30%), Positives = 43/73 (58%)

Query:    31 RPQAE--PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYAT 88
             RP +E     NL++SGL +  T + + D FS FG +++++++  + +G S+G  F+++  
Sbjct:    97 RPSSEVIKDANLYISGLPRSMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDK 156

Query:    89 LEAAGKAIEGMDG 101
                A +AI   +G
Sbjct:   157 RSEAEEAITNFNG 169


>UNIPROTKB|Q15717 [details] [associations]
            symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0070935
            "3'-UTR-mediated mRNA stabilization" evidence=IDA;IMP] [GO:0048255
            "mRNA stabilization" evidence=IDA;IMP] [GO:0005737 "cytoplasm"
            evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0017091
            "AU-rich element binding" evidence=IDA] [GO:0005515 "protein
            binding" evidence=IPI] [GO:0003723 "RNA binding" evidence=IDA]
            [GO:0019901 "protein kinase binding" evidence=IPI] [GO:0035925
            "mRNA 3'-UTR AU-rich region binding" evidence=IDA] [GO:0045727
            "positive regulation of translation" evidence=IDA] [GO:0003729
            "mRNA binding" evidence=TAS] [GO:0007275 "multicellular organismal
            development" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
            [GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
            evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
            [GO:0016071 "mRNA metabolic process" evidence=TAS]
            Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            GO:GO:0007275 GO:GO:0005829 GO:GO:0010467 GO:GO:0016071
            GO:GO:0005654 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
            GO:GO:0017091 EMBL:CH471139 GO:GO:0045727 eggNOG:COG0724
            GO:GO:0070935 HOVERGEN:HBG002295 EMBL:U38175 EMBL:BT009793
            EMBL:BC003376 IPI:IPI00940851 RefSeq:NP_001410.2 UniGene:Hs.184492
            UniGene:Hs.713744 PDB:3HI9 PDB:4ED5 PDB:4EGL PDB:4FXV PDBsum:3HI9
            PDBsum:4ED5 PDBsum:4EGL PDBsum:4FXV ProteinModelPortal:Q15717
            SMR:Q15717 IntAct:Q15717 MINT:MINT-5001300 STRING:Q15717
            PhosphoSite:Q15717 DMDM:20981691 PaxDb:Q15717 PeptideAtlas:Q15717
            PRIDE:Q15717 DNASU:1994 Ensembl:ENST00000407627 GeneID:1994
            KEGG:hsa:1994 UCSC:uc002mjb.3 CTD:1994 GeneCards:GC19M008023
            HGNC:HGNC:3312 HPA:CAB005256 MIM:603466 neXtProt:NX_Q15717
            PharmGKB:PA27740 HOGENOM:HOG000231162 InParanoid:Q15717 KO:K13088
            OrthoDB:EOG4Z8XWZ PhylomeDB:Q15717 BindingDB:Q15717
            ChEMBL:CHEMBL1250379 EvolutionaryTrace:Q15717 GenomeRNAi:1994
            NextBio:8063 ArrayExpress:Q15717 Bgee:Q15717 CleanEx:HS_ELAVL1
            Genevestigator:Q15717 GermOnline:ENSG00000066044 TIGRFAMs:TIGR01661
            Uniprot:Q15717
        Length = 326

 Score = 158 (60.7 bits), Expect = 4.4e-11, P = 4.4e-11
 Identities = 33/79 (41%), Positives = 49/79 (62%)

Query:    38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
             TNL V+ L +  T + LR  FS+ GEV  AK+++ + +G+S G+GFV Y T + A +AI 
Sbjct:    20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIN 79

Query:    98 GMDGKFLDGWVIFVEYAKP 116
              ++G  L    I V YA+P
Sbjct:    80 TLNGLRLQSKTIKVSYARP 98

 Score = 120 (47.3 bits), Expect = 6.9e-07, P = 6.9e-07
 Identities = 22/73 (30%), Positives = 43/73 (58%)

Query:    31 RPQAE--PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYAT 88
             RP +E     NL++SGL +  T + + D FS FG +++++++  + +G S+G  F+++  
Sbjct:    97 RPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDK 156

Query:    89 LEAAGKAIEGMDG 101
                A +AI   +G
Sbjct:   157 RSEAEEAITSFNG 169


>ZFIN|ZDB-GENE-050306-51 [details] [associations]
            symbol:rbm8a "RNA binding motif protein 8A"
            species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] [GO:0006396 "RNA processing"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0000184
            "nuclear-transcribed mRNA catabolic process, nonsense-mediated
            decay" evidence=IEA] [GO:0006417 "regulation of translation"
            evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0051028
            "mRNA transport" evidence=IEA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0016607
            "nuclear speck" evidence=IEA] InterPro:IPR000504 InterPro:IPR008111
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102
            SMART:SM00360 ZFIN:ZDB-GENE-050306-51 GO:GO:0005737 GO:GO:0006417
            GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0016607
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0051028
            eggNOG:COG0724 GeneTree:ENSGT00550000074641 CTD:9939
            HOGENOM:HOG000183826 KO:K12876 OMA:WILFVTS OrthoDB:EOG42822W
            EMBL:BC090261 IPI:IPI00505312 RefSeq:NP_001013363.1
            UniGene:Dr.76821 HSSP:Q9Y5S9 ProteinModelPortal:Q5D018 SMR:Q5D018
            STRING:Q5D018 PRIDE:Q5D018 Ensembl:ENSDART00000018253 GeneID:503767
            KEGG:dre:503767 InParanoid:Q5D018 NextBio:20866311 Bgee:Q5D018
            Uniprot:Q5D018
        Length = 174

 Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
 Identities = 31/81 (38%), Positives = 50/81 (61%)

Query:    40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
             LFV+G+ +  T+E + D F+ FGE+ +  +   R +GY KG+  V+Y T + A  A+EG+
Sbjct:    75 LFVTGVHEEATEEDVHDKFAEFGEIKNLHLNLDRRTGYLKGYALVEYETYKEAQAAMEGL 134

Query:   100 DGKFLDGWVIFVEYAKPRQPP 120
             +G+ L G  I V++   R PP
Sbjct:   135 NGQELMGQPISVDWCFVRGPP 155


>UNIPROTKB|F1PSC4 [details] [associations]
            symbol:ELAVL1 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:AAEX03012469
            Ensembl:ENSCAFT00000029161 Uniprot:F1PSC4
        Length = 334

 Score = 158 (60.7 bits), Expect = 4.8e-11, P = 4.8e-11
 Identities = 33/79 (41%), Positives = 49/79 (62%)

Query:    38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
             TNL V+ L +  T + LR  FS+ GEV  AK+++ + +G+S G+GFV Y T + A +AI 
Sbjct:    28 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIN 87

Query:    98 GMDGKFLDGWVIFVEYAKP 116
              ++G  L    I V YA+P
Sbjct:    88 TLNGLRLQSKTIKVSYARP 106

 Score = 120 (47.3 bits), Expect = 7.3e-07, P = 7.3e-07
 Identities = 22/73 (30%), Positives = 43/73 (58%)

Query:    31 RPQAE--PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYAT 88
             RP +E     NL++SGL +  T + + D FS FG +++++++  + +G S+G  F+++  
Sbjct:   105 RPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDK 164

Query:    89 LEAAGKAIEGMDG 101
                A +AI   +G
Sbjct:   165 RSEAEEAITSFNG 177


>UNIPROTKB|B4DVB8 [details] [associations]
            symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] [GO:0006417 "regulation of translation"
            evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 HOVERGEN:HBG002295 UniGene:Hs.184492
            UniGene:Hs.713744 HGNC:HGNC:3312 HOGENOM:HOG000231162
            TIGRFAMs:TIGR01661 EMBL:AC010336 EMBL:AC008975 EMBL:AK301013
            IPI:IPI00301936 ProteinModelPortal:B4DVB8 SMR:B4DVB8 IntAct:B4DVB8
            STRING:B4DVB8 PRIDE:B4DVB8 Ensembl:ENST00000351593 OMA:RFGGPLH
            ArrayExpress:B4DVB8 Bgee:B4DVB8 Uniprot:B4DVB8
        Length = 353

 Score = 158 (60.7 bits), Expect = 5.5e-11, P = 5.5e-11
 Identities = 33/79 (41%), Positives = 49/79 (62%)

Query:    38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
             TNL V+ L +  T + LR  FS+ GEV  AK+++ + +G+S G+GFV Y T + A +AI 
Sbjct:    47 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIN 106

Query:    98 GMDGKFLDGWVIFVEYAKP 116
              ++G  L    I V YA+P
Sbjct:   107 TLNGLRLQSKTIKVSYARP 125

 Score = 120 (47.3 bits), Expect = 8.1e-07, P = 8.1e-07
 Identities = 22/73 (30%), Positives = 43/73 (58%)

Query:    31 RPQAE--PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYAT 88
             RP +E     NL++SGL +  T + + D FS FG +++++++  + +G S+G  F+++  
Sbjct:   124 RPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDK 183

Query:    89 LEAAGKAIEGMDG 101
                A +AI   +G
Sbjct:   184 RSEAEEAITSFNG 196


>ZFIN|ZDB-GENE-030131-6986 [details] [associations]
            symbol:ncl "nucleolin" species:7955 "Danio rerio"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            ZFIN:ZDB-GENE-030131-6986 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 HOVERGEN:HBG002295 InterPro:IPR017859 PRINTS:PR01503
            EMBL:BC162643 IPI:IPI00485582 UniGene:Dr.75207
            ProteinModelPortal:B3DH54 STRING:B3DH54 ArrayExpress:B3DH54
            Uniprot:B3DH54
        Length = 708

 Score = 163 (62.4 bits), Expect = 5.7e-11, P = 5.7e-11
 Identities = 36/87 (41%), Positives = 52/87 (59%)

Query:    31 RPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLE 90
             R  + P+  LFV GLS  TTD+TL+D+F      + A+I   R++G SKGFGFV +   +
Sbjct:   550 RGNSGPTKTLFVKGLSDDTTDQTLKDSFDG---AIAARIATDRDTGSSKGFGFVDFDNEQ 606

Query:    91 AAGKAIEGMDGKFLDGWVIFVEYAKPR 117
                 A E MD   +DG  + ++YAKP+
Sbjct:   607 DCKAAKEAMDDGEIDGNKVTLDYAKPK 633


>UNIPROTKB|K7ENX8 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000589266 Uniprot:K7ENX8
        Length = 89

 Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
 Identities = 34/89 (38%), Positives = 52/89 (58%)

Query:    34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAG 93
             A     LFV GLS  T +++L   FS +G++    +VK RE+  S+GFGFV +  ++ A 
Sbjct:     2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61

Query:    94 KAIEGMDGKFLDGWVIFVEYAKPRQPPTL 122
              A+  M+GK +DG  I V+  +P +P  L
Sbjct:    62 DAMMAMNGKSVDGRQIRVD--QPLRPSVL 88


>UNIPROTKB|F1N4Q4 [details] [associations]
            symbol:PABPC5 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            KO:K13126 TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232
            CTD:140886 OMA:FSEYGPT EMBL:DAAA02070194 IPI:IPI00700504
            RefSeq:NP_001179218.1 UniGene:Bt.60242 ProteinModelPortal:F1N4Q4
            Ensembl:ENSBTAT00000026566 GeneID:511286 KEGG:bta:511286
            NextBio:20869865 Uniprot:F1N4Q4
        Length = 382

 Score = 158 (60.7 bits), Expect = 6.7e-11, P = 6.7e-11
 Identities = 33/80 (41%), Positives = 49/80 (61%)

Query:    38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
             TN+FV        D+ L++ FS +G     K+++   SG SKGFGFV+Y T EAA KA+ 
Sbjct:   199 TNVFVKNFGDDMDDDKLKELFSEYGPTESVKVIRD-SSGKSKGFGFVRYETHEAAQKAVL 257

Query:    98 GMDGKFLDGWVIFVEYAKPR 117
              + GK +DG V++V  A+ +
Sbjct:   258 DLHGKSIDGKVLYVGRAQKK 277

 Score = 126 (49.4 bits), Expect = 2.1e-07, P = 2.1e-07
 Identities = 28/93 (30%), Positives = 50/93 (53%)

Query:    26 LNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVK 85
             L    RP   P   +++  L +   DE L++ FS+FG +  AK++   E G  KGFG + 
Sbjct:   293 LKEKSRP---PGVPIYIKNLDETIDDEKLKEEFSSFGSISRAKVMV--EVGQGKGFGVIC 347

Query:    86 YATLEAAGKAIEGMDGKFLDGWVIFVEYAKPRQ 118
             +++ E A KA++ M+G+ +    + V   + R+
Sbjct:   348 FSSFEEATKAVDEMNGRIVGSKPLQVTLGQARR 380

 Score = 112 (44.5 bits), Expect = 6.9e-06, P = 6.9e-06
 Identities = 31/97 (31%), Positives = 51/97 (52%)

Query:    16 LFSTSPFSSSLNPPQ-RPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRE 74
             L +  PF    + P  R +     N+F+  L K   +  L   FSAFG ++  K+V   +
Sbjct:    83 LINGKPFRLMWSQPDDRLRKSGIGNIFIKNLDKSIDNRALFYLFSAFGSILSCKVVCD-D 141

Query:    75 SGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFV 111
             +G SKG+ +V + +L AA +AI  M+G  L+   ++V
Sbjct:   142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYV 177


>POMBASE|SPAC25G10.01 [details] [associations]
            symbol:SPAC25G10.01 "RNA-binding protein" species:4896
            "Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            PomBase:SPAC25G10.01 GO:GO:0005634 EMBL:CU329670 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG297815 PIR:T38372
            RefSeq:XP_001713104.1 ProteinModelPortal:Q10422
            EnsemblFungi:SPAC25G10.01.1 GeneID:3361412 KEGG:spo:SPAC25G10.01
            OMA:ERAVEAN OrthoDB:EOG4KPXM5 NextBio:20811463 Uniprot:Q10422
        Length = 297

 Score = 155 (59.6 bits), Expect = 7.2e-11, P = 7.2e-11
 Identities = 34/98 (34%), Positives = 58/98 (59%)

Query:    28 PPQRPQAEPS--TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVK 85
             P   P+   +   +LFVSG++ R  ++ L+  FS FG V H +I++   +  S+GFGF+ 
Sbjct:    89 PQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLS 148

Query:    86 YATLEAAGKAIEGMDGKFLDGWVIFVEYAKPRQP--PT 121
             ++T+E A  AI+ ++ +   G V+ V+ AK  +P  PT
Sbjct:   149 FSTVEEATSAIDNLNSQEFYGRVLNVQKAKRSRPHSPT 186


>UNIPROTKB|Q9PTX2 [details] [associations]
            symbol:cirbp "Cold-inducible RNA-binding protein"
            species:8400 "Rana catesbeiana" [GO:0003729 "mRNA binding"
            evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
            [GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
            evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS] [GO:0009409
            "response to cold" evidence=ISS] [GO:0009790 "embryo development"
            evidence=ISS] [GO:0016477 "cell migration" evidence=ISS]
            [GO:0019899 "enzyme binding" evidence=ISS] [GO:0022008
            "neurogenesis" evidence=ISS] [GO:0042750 "hibernation"
            evidence=IEP] [GO:0045727 "positive regulation of translation"
            evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
            [GO:0048793 "pronephros development" evidence=ISS] [GO:0060212
            "negative regulation of nuclear-transcribed mRNA poly(A) tail
            shortening" evidence=ISS] [GO:0005840 "ribosome" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
            GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
            Gene3D:3.30.70.330 GO:GO:0019899 GO:GO:0048255 GO:GO:0003730
            GO:GO:0045727 GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480
            GO:GO:0060212 HSSP:P09651 EMBL:AB025351 ProteinModelPortal:Q9PTX2
            SMR:Q9PTX2 GO:GO:0042750 Uniprot:Q9PTX2
        Length = 164

 Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
 Identities = 33/75 (44%), Positives = 46/75 (61%)

Query:    40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
             LFV GLS  T ++ L   FS +G++    +VK RE+  S+GFGFV +   E A  A+ GM
Sbjct:     8 LFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAGM 67

Query:   100 DGKFLDGWVIFVEYA 114
             +GK +DG  I V+ A
Sbjct:    68 NGKTVDGRQIRVDQA 82


>RGD|620145 [details] [associations]
            symbol:Rbm3 "RNA binding motif (RNP1, RRM) protein 3"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
            "protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006412 "translation"
            evidence=ISO] [GO:0006417 "regulation of translation"
            evidence=ISO;ISS] [GO:0006950 "response to stress" evidence=IEA]
            [GO:0009409 "response to cold" evidence=ISO] [GO:0015934 "large
            ribosomal subunit" evidence=IDA] [GO:0030425 "dendrite"
            evidence=IDA] [GO:0035196 "production of miRNAs involved in gene
            silencing by miRNA" evidence=ISO] [GO:0043023 "ribosomal large
            subunit binding" evidence=ISO] [GO:0045727 "positive regulation of
            translation" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620145 GO:GO:0005634
            GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
            GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727
            eggNOG:COG0724 HOVERGEN:HBG107480 HSSP:P09651 HOGENOM:HOG000276232
            OrthoDB:EOG4HHP40 GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186
            EMBL:FM093406 EMBL:AF355190 IPI:IPI00367437 IPI:IPI00955177
            RefSeq:NP_446148.1 UniGene:Rn.18057 ProteinModelPortal:Q925G0
            MINT:MINT-4611770 STRING:Q925G0 PRIDE:Q925G0 GeneID:114488
            KEGG:rno:114488 UCSC:RGD:620145 InParanoid:Q925G0 NextBio:618509
            Genevestigator:Q925G0 Uniprot:Q925G0
        Length = 155

 Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
 Identities = 31/75 (41%), Positives = 46/75 (61%)

Query:    40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
             LFV GL+  T ++ L D FS+FG +    +VK RE+  S+GFGF+ +   E A   +  M
Sbjct:     8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDVMRAM 67

Query:   100 DGKFLDGWVIFVEYA 114
             +G+ LDG  I V++A
Sbjct:    68 NGESLDGRQIRVDHA 82


>ZFIN|ZDB-GENE-030131-5841 [details] [associations]
            symbol:cirbp "cold inducible RNA binding protein"
            species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0009409 "response
            to cold" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            ZFIN:ZDB-GENE-030131-5841 GO:GO:0000166 GO:GO:0009409
            Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104309
            EMBL:BX649404 IPI:IPI00758644 PRIDE:F1R6L3
            Ensembl:ENSDART00000105405 ArrayExpress:F1R6L3 Bgee:F1R6L3
            Uniprot:F1R6L3
        Length = 224

 Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
 Identities = 30/75 (40%), Positives = 48/75 (64%)

Query:    40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
             LF+ GLS  TT+++L + FS +G +    +++ RE+  S+GFGFV +   E A  A+  M
Sbjct:    25 LFIGGLSYDTTEQSLEEAFSKYGTIAKVDVIRDRETDRSRGFGFVTFENPEDAKDAMAAM 84

Query:   100 DGKFLDGWVIFVEYA 114
             +GK +DG +I V+ A
Sbjct:    85 NGKQVDGRMIRVDEA 99


>DICTYBASE|DDB_G0290307 [details] [associations]
            symbol:DDB_G0290307 "ELAVL1-like protein"
            species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
            [GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            dictyBase:DDB_G0290307 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:AAFI02000162 eggNOG:NOG256997 RefSeq:XP_635793.1
            ProteinModelPortal:Q54G90 EnsemblProtists:DDB0233651 GeneID:8627598
            KEGG:ddi:DDB_G0290307 InParanoid:Q54G90 OMA:SATNQCK Uniprot:Q54G90
        Length = 459

 Score = 159 (61.0 bits), Expect = 7.6e-11, P = 7.6e-11
 Identities = 36/93 (38%), Positives = 53/93 (56%)

Query:    37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
             S NLF+S L    T +TLR  FSAFGE+   +++    +G S+GFGFVK+  + +A  AI
Sbjct:    98 SGNLFISFLPATYTSDTLRSIFSAFGEIDSCRVMVDLNTGLSRGFGFVKFKDVASAQYAI 157

Query:    97 EGMDGKFLDGWVIFVEYAKPRQPPTLPSQNNTN 129
               M+G  ++   + V +A        P+ NNTN
Sbjct:   158 NSMNGAKVENKTLLVRFANSD-----PNSNNTN 185

 Score = 121 (47.7 bits), Expect = 9.8e-07, P = 9.8e-07
 Identities = 32/95 (33%), Positives = 48/95 (50%)

Query:    23 SSSLNPP--QRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKG 80
             SSS  PP  + P  +P TNL+V  L     D  L   FS  G +   KIV+ + +   +G
Sbjct:   366 SSSQPPPGGKNPGTDP-TNLYVYNLPSDADDSLLYRLFSPCGAIASVKIVRDQTTQVCRG 424

Query:    81 FGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAK 115
             +GFV+  +L  +  AI  ++G  + G  I V + K
Sbjct:   425 YGFVRMVSLADSYSAINSINGVQVGGKTISVSFKK 459

 Score = 107 (42.7 bits), Expect = 3.2e-05, P = 3.2e-05
 Identities = 25/82 (30%), Positives = 45/82 (54%)

Query:    23 SSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFG 82
             S++ N     + + S N+F+ GL        L + FSA+GEVV +K++    +  S+G G
Sbjct:   204 SNNNNTNNIDEQKISNNVFIRGLPIEFDKNQLSELFSAYGEVVESKLLIDITTNASRGQG 263

Query:    83 FVKYATLEAAGKAIEGMDGKFL 104
              V+Y   ++A  A++ ++G  L
Sbjct:   264 LVRYIDTQSAINAVKSLNGFIL 285


>TAIR|locus:2058141 [details] [associations]
            symbol:AT2G43370 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0008150
            "biological_process" evidence=ND] [GO:0000398 "mRNA splicing, via
            spliceosome" evidence=RCA] [GO:0008284 "positive regulation of cell
            proliferation" evidence=RCA] [GO:0048573 "photoperiodism,
            flowering" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            EMBL:CP002685 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GO:GO:0030529 HSSP:Q9V535 HOGENOM:HOG000006374 KO:K13155
            EMBL:AY072388 EMBL:AY114697 IPI:IPI00539495 RefSeq:NP_850395.1
            UniGene:At.42685 ProteinModelPortal:Q8VY74 SMR:Q8VY74 IntAct:Q8VY74
            STRING:Q8VY74 EnsemblPlants:AT2G43370.1 GeneID:818938
            KEGG:ath:AT2G43370 TAIR:At2g43370 InParanoid:Q8VY74 OMA:RLVRHIV
            PhylomeDB:Q8VY74 ProtClustDB:CLSN2680226 Genevestigator:Q8VY74
            Uniprot:Q8VY74
        Length = 333

 Score = 156 (60.0 bits), Expect = 7.9e-11, P = 7.9e-11
 Identities = 36/112 (32%), Positives = 61/112 (54%)

Query:    12 GLRRLFSTSPFSSSLNPPQ---RPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAK 68
             G+RR      +++ L  P    +   +P   LFV  LS  TT++TLR+  S +G + + +
Sbjct:    37 GVRRALLC--YNAGLYDPSGDSKAVGDPYCTLFVGRLSHHTTEDTLREVMSKYGRIKNLR 94

Query:    69 IVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKPRQPP 120
             +V+H  +G S+G+GFV+Y T +   +A E      +DG  I V+Y + +  P
Sbjct:    95 LVRHIVTGASRGYGFVEYETEKEMLRAYEDAHHSLIDGREIIVDYNRQQLMP 146


>RGD|1311201 [details] [associations]
            symbol:Pabpc6 "poly(A) binding protein, cytoplasmic 6"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1311201
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
            HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
            GeneTree:ENSGT00640000091232 EMBL:CH474059 EMBL:BC168959
            IPI:IPI00214614 RefSeq:NP_001099678.1 UniGene:Rn.108830
            MINT:MINT-7138834 Ensembl:ENSRNOT00000023319 GeneID:292295
            KEGG:rno:292295 CTD:67543 OMA:HEDARKA OrthoDB:EOG41G360
            NextBio:633994 Genevestigator:B5DF80 Uniprot:B5DF80
        Length = 643

 Score = 161 (61.7 bits), Expect = 8.2e-11, P = 8.2e-11
 Identities = 37/80 (46%), Positives = 51/80 (63%)

Query:    39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
             N+FV  L +    +TL DTFSAFG ++  K+V   E+G SKG+GFV + T E A +AIE 
Sbjct:   100 NIFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEEAERAIEK 157

Query:    99 MDGKFLDGWVIFVEYAKPRQ 118
             M+G FL+   +FV   K R+
Sbjct:   158 MNGMFLNDRKVFVGRFKSRR 177

 Score = 158 (60.7 bits), Expect = 1.7e-10, P = 1.7e-10
 Identities = 35/85 (41%), Positives = 53/85 (62%)

Query:    33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
             +A+  TN+++  L +   DE L+D FS FG  +  K++   ESG SKGFGFV +   E A
Sbjct:   186 RAKEFTNVYIKNLGEDMDDERLQDLFSRFGPALSVKVMTD-ESGKSKGFGFVSFERHEDA 244

Query:    93 GKAIEGMDGKFLDGWVIFVEYAKPR 117
              KA++ M+GK L+G  I+V  A+ +
Sbjct:   245 RKAVDEMNGKDLNGKQIYVGRAQKK 269

 Score = 137 (53.3 bits), Expect = 3.1e-08, P = 3.1e-08
 Identities = 33/91 (36%), Positives = 48/91 (52%)

Query:    28 PPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYA 87
             P  R       NL+V  L     DE LR  FS FG +  AK+    E G SKGFGFV ++
Sbjct:   294 PQDRSVRCQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVTM--EGGRSKGFGFVCFS 351

Query:    88 TLEAAGKAIEGMDGKFLDGWVIFVEYAKPRQ 118
             + E A KA+  M+G+ +    ++V  A+ ++
Sbjct:   352 SPEEATKAVTEMNGRIVATKPLYVALAQRKE 382


>DICTYBASE|DDB_G0293558 [details] [associations]
            symbol:pabpc1A "polyadenylate binding protein (PABP)"
            species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
            vesicle" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0008143 "poly(A) RNA
            binding" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
            evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA;ISS] [GO:0006397
            "mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 dictyBase:DDB_G0293558 GO:GO:0005634 GO:GO:0045335
            GenomeReviews:CM000155_GR GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0006378 EMBL:AAFI02000218 eggNOG:COG0724 GO:GO:0008143
            KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            HSSP:P11940 OMA:ITEKNQQ RefSeq:XP_629007.1
            ProteinModelPortal:Q54BM2 SMR:Q54BM2 STRING:Q54BM2 PRIDE:Q54BM2
            EnsemblProtists:DDB0233359 GeneID:8629291 KEGG:ddi:DDB_G0293558
            ProtClustDB:CLSZ2846557 Uniprot:Q54BM2
        Length = 565

 Score = 160 (61.4 bits), Expect = 8.5e-11, P = 8.5e-11
 Identities = 38/96 (39%), Positives = 54/96 (56%)

Query:    39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
             N+F+  L K    + L DTFSAFG ++  K+V   +   SKGFGFV Y T E+A KAI  
Sbjct:    99 NVFIKNLDKGIDHKALYDTFSAFGNILSCKVVTD-DGNSSKGFGFVHYETQESADKAIAK 157

Query:    99 MDGKFLDGWVIFV---EYAKPRQPPTLPSQNNTNFQ 131
             ++G  ++G  +FV   + +K R  PT     N  F+
Sbjct:   158 VNGMMINGQKVFVGPFKSSKERGQPTEVKFTNVFFK 193

 Score = 130 (50.8 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 35/116 (30%), Positives = 57/116 (49%)

Query:     6 AVAAPRGL----RRLFSTSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAF 61
             A+A   G+    +++F   PF SS    Q P     TN+F   LS+    + L++    +
Sbjct:   154 AIAKVNGMMINGQKVF-VGPFKSSKERGQ-PTEVKFTNVFFKNLSEDVGPDQLKELLQQY 211

Query:    62 GEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKPR 117
             GE+ +  I+   + G SKGFGF  + + EAA   +E  +GK   G  I+   A+ +
Sbjct:   212 GEITNITIMAD-DKGKSKGFGFANFESAEAAKNVVENENGKIFHGKPIYAGRAQKK 266

 Score = 126 (49.4 bits), Expect = 3.9e-07, P = 3.9e-07
 Identities = 30/100 (30%), Positives = 54/100 (54%)

Query:    39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
             NL++  +     ++ LR+ FS FG +  A ++K  ++  SKGFGFV Y   + A +A+  
Sbjct:   285 NLYIKNIDDSIDNDKLREVFSQFGTITSAIVMKDDKATTSKGFGFVCYTAPDEATRAVTE 344

Query:    99 MDGKFLDGWVIFVEYAKPR--QPPTLPSQNNTNFQYG-RQ 135
             M+G+ +    ++V  A+ +  +   L  Q+   F+ G RQ
Sbjct:   345 MNGRMIGTKPLYVALAQRKDIRRAQLEMQHQQKFKTGIRQ 384


>UNIPROTKB|Q96DU9 [details] [associations]
            symbol:PABPC5 "Polyadenylate-binding protein 5"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            EMBL:CH471115 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
            TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AJ278963 EMBL:AK290105
            EMBL:AL662874 EMBL:BC063113 EMBL:AL122118 IPI:IPI00061206
            PIR:T34543 RefSeq:NP_543022.1 UniGene:Hs.246590
            ProteinModelPortal:Q96DU9 SMR:Q96DU9 IntAct:Q96DU9 STRING:Q96DU9
            PhosphoSite:Q96DU9 DMDM:28201851 PaxDb:Q96DU9 PRIDE:Q96DU9
            DNASU:140886 Ensembl:ENST00000312600 GeneID:140886 KEGG:hsa:140886
            UCSC:uc004efg.3 CTD:140886 GeneCards:GC0XP090689 HGNC:HGNC:13629
            HPA:HPA000164 HPA:HPA000165 MIM:300407 neXtProt:NX_Q96DU9
            PharmGKB:PA32884 InParanoid:Q96DU9 OMA:FSEYGPT PhylomeDB:Q96DU9
            GenomeRNAi:140886 NextBio:84542 ArrayExpress:Q96DU9 Bgee:Q96DU9
            CleanEx:HS_PABPC5 Genevestigator:Q96DU9 GermOnline:ENSG00000174740
            Uniprot:Q96DU9
        Length = 382

 Score = 157 (60.3 bits), Expect = 8.6e-11, P = 8.6e-11
 Identities = 33/80 (41%), Positives = 49/80 (61%)

Query:    38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
             TN+FV  +     DE L++ F  +G     K+++   SG SKGFGFV+Y T EAA KA+ 
Sbjct:   199 TNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVL 257

Query:    98 GMDGKFLDGWVIFVEYAKPR 117
              + GK +DG V++V  A+ +
Sbjct:   258 DLHGKSIDGKVLYVGRAQKK 277

 Score = 131 (51.2 bits), Expect = 5.9e-08, P = 5.9e-08
 Identities = 29/93 (31%), Positives = 50/93 (53%)

Query:    26 LNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVK 85
             L    RP   P   +++  L +   DE L++ FS+FG +  AK++   E G  KGFG V 
Sbjct:   293 LKEKSRP---PGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMM--EVGQGKGFGVVC 347

Query:    86 YATLEAAGKAIEGMDGKFLDGWVIFVEYAKPRQ 118
             +++ E A KA++ M+G+ +    + V   + R+
Sbjct:   348 FSSFEEATKAVDEMNGRIVGSKPLHVTLGQARR 380

 Score = 112 (44.5 bits), Expect = 6.9e-06, P = 6.9e-06
 Identities = 31/97 (31%), Positives = 51/97 (52%)

Query:    16 LFSTSPFSSSLNPPQ-RPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRE 74
             L +  PF    + P  R +     N+F+  L K   +  L   FSAFG ++  K+V   +
Sbjct:    83 LINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD-D 141

Query:    75 SGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFV 111
             +G SKG+ +V + +L AA +AI  M+G  L+   ++V
Sbjct:   142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYV 177


>UNIPROTKB|F1PQV8 [details] [associations]
            symbol:PABPC5 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
            GeneTree:ENSGT00640000091232 CTD:140886 OMA:FSEYGPT
            EMBL:AAEX03026633 RefSeq:XP_549122.2 ProteinModelPortal:F1PQV8
            Ensembl:ENSCAFT00000027652 GeneID:492002 KEGG:cfa:492002
            Uniprot:F1PQV8
        Length = 382

 Score = 157 (60.3 bits), Expect = 8.6e-11, P = 8.6e-11
 Identities = 33/80 (41%), Positives = 49/80 (61%)

Query:    38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
             TN+FV        DE L++ FS +G     K+++   SG SKGFGFV+Y T EAA KA+ 
Sbjct:   199 TNVFVKNFGNDMDDEKLKEIFSGYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVL 257

Query:    98 GMDGKFLDGWVIFVEYAKPR 117
              + GK ++G V++V  A+ +
Sbjct:   258 DLHGKSINGKVLYVGRAQKK 277

 Score = 125 (49.1 bits), Expect = 2.7e-07, P = 2.7e-07
 Identities = 29/92 (31%), Positives = 49/92 (53%)

Query:    26 LNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVK 85
             L    RP   P   +++  L +   DE L++ FS+FG +  AK++   E G  KGFG V 
Sbjct:   293 LKEKSRP---PGVPIYIKNLDETIDDEKLKEEFSSFGSISRAKVMV--EVGQGKGFGVVC 347

Query:    86 YATLEAAGKAIEGMDGKFLDGWVIFVEYAKPR 117
             +++ E A KA++ M+G+ +    + V   + R
Sbjct:   348 FSSFEDATKAVDEMNGRTVGSKPLHVTLGQAR 379

 Score = 112 (44.5 bits), Expect = 6.9e-06, P = 6.9e-06
 Identities = 31/97 (31%), Positives = 51/97 (52%)

Query:    16 LFSTSPFSSSLNPPQ-RPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRE 74
             L +  PF    + P  R +     N+F+  L K   +  L   FSAFG ++  K+V   +
Sbjct:    83 LINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD-D 141

Query:    75 SGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFV 111
             +G SKG+ +V + +L AA +AI  M+G  L+   ++V
Sbjct:   142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYV 177


>UNIPROTKB|E7EQV3 [details] [associations]
            symbol:PABPC1 "Polyadenylate-binding protein 1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00977833
            ProteinModelPortal:E7EQV3 SMR:E7EQV3 Ensembl:ENST00000519004
            ArrayExpress:E7EQV3 Bgee:E7EQV3 Uniprot:E7EQV3
        Length = 591

 Score = 160 (61.4 bits), Expect = 9.2e-11, P = 9.2e-11
 Identities = 45/118 (38%), Positives = 61/118 (51%)

Query:    10 PRGLRRLFSTSPFSSSLNPPQR---PQAEPST------NLFVSGLSKRTTDETLRDTFSA 60
             P    R   T  F      P R    Q +PS       N+F+  L K   ++ L DTFSA
Sbjct:    17 PADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSA 76

Query:    61 FGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKPRQ 118
             FG ++  K+V   E+G SKG+GFV + T EAA +AIE M+G  L+   +FV   K R+
Sbjct:    77 FGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 132

 Score = 151 (58.2 bits), Expect = 8.5e-10, P = 8.5e-10
 Identities = 33/85 (38%), Positives = 51/85 (60%)

Query:    33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
             +A+  TN+++    +   DE L+D F  FG  +  K++   ESG SKGFGFV +   E A
Sbjct:   141 RAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDA 199

Query:    93 GKAIEGMDGKFLDGWVIFVEYAKPR 117
              KA++ M+GK L+G  I+V  A+ +
Sbjct:   200 QKAVDEMNGKELNGKQIYVGRAQKK 224

 Score = 136 (52.9 bits), Expect = 3.5e-08, P = 3.5e-08
 Identities = 31/80 (38%), Positives = 47/80 (58%)

Query:    39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
             NL+V  L     DE LR  FS FG +  AK++   E G SKGFGFV +++ E A KA+  
Sbjct:   250 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTE 307

Query:    99 MDGKFLDGWVIFVEYAKPRQ 118
             M+G+ +    ++V  A+ ++
Sbjct:   308 MNGRIVATKPLYVALAQRKE 327


>UNIPROTKB|E2RQC8 [details] [associations]
            symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:AAEX03008681
            ProteinModelPortal:E2RQC8 PRIDE:E2RQC8 Ensembl:ENSCAFT00000000885
            NextBio:20898275 Uniprot:E2RQC8
        Length = 596

 Score = 160 (61.4 bits), Expect = 9.3e-11, P = 9.3e-11
 Identities = 45/118 (38%), Positives = 61/118 (51%)

Query:    10 PRGLRRLFSTSPFSSSLNPPQR---PQAEPST------NLFVSGLSKRTTDETLRDTFSA 60
             P    R   T  F      P R    Q +PS       N+F+  L K   ++ L DTFSA
Sbjct:    62 PADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSA 121

Query:    61 FGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKPRQ 118
             FG ++  K+V   E+G SKG+GFV + T EAA +AIE M+G  L+   +FV   K R+
Sbjct:   122 FGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 177

 Score = 151 (58.2 bits), Expect = 8.6e-10, P = 8.6e-10
 Identities = 33/85 (38%), Positives = 51/85 (60%)

Query:    33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
             +A+  TN+++    +   DE L+D F  FG  +  K++   ESG SKGFGFV +   E A
Sbjct:   186 RAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDA 244

Query:    93 GKAIEGMDGKFLDGWVIFVEYAKPR 117
              KA++ M+GK L+G  I+V  A+ +
Sbjct:   245 QKAVDEMNGKELNGKQIYVGRAQKK 269

 Score = 105 (42.0 bits), Expect = 7.5e-05, P = 7.5e-05
 Identities = 23/52 (44%), Positives = 31/52 (59%)

Query:    39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLE 90
             NL+V  L     DE LR  FS FG +  AK++   E G SKGFGFV ++ ++
Sbjct:   295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSYMQ 344


>ZFIN|ZDB-GENE-040426-1391 [details] [associations]
            symbol:tra2a "transformer-2 alpha" species:7955
            "Danio rerio" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            ZFIN:ZDB-GENE-040426-1391 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000276232
            GeneTree:ENSGT00700000104309 HSSP:P52298 CTD:29896
            HOVERGEN:HBG102125 KO:K12897 OMA:DRYEEYD OrthoDB:EOG4BVRW2
            EMBL:BX469899 EMBL:BC054632 IPI:IPI00510581 RefSeq:NP_956710.1
            UniGene:Dr.75585 SMR:Q7T2A0 STRING:Q7T2A0
            Ensembl:ENSDART00000008595 GeneID:393388 KEGG:dre:393388
            InParanoid:Q7T2A0 NextBio:20814435 Uniprot:Q7T2A0
        Length = 297

 Score = 154 (59.3 bits), Expect = 9.3e-11, P = 9.3e-11
 Identities = 39/111 (35%), Positives = 60/111 (54%)

Query:    12 GLRRLFSTSPFSSSLNPPQ-RPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIV 70
             G R  +S      S N    R   +P+T L V GLS  TT+  LR+ FS +G +    +V
Sbjct:   108 GSRSSYSHDSKKDSHNQGDARANPDPNTCLGVFGLSLYTTERDLREVFSRYGSLAGVNVV 167

Query:    71 KHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKPRQPPT 121
               + +G S+GF FV +  ++ A +A+E  +G  LDG  I V+Y+  ++P T
Sbjct:   168 YDQRTGRSRGFAFVYFEHIDDAKEAMERANGMELDGRRIRVDYSITKRPHT 218


>UNIPROTKB|Q5SZ64 [details] [associations]
            symbol:SF3B4 "Splicing factor 3B subunit 4" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL591493
            HOVERGEN:HBG002295 HOGENOM:HOG000200535 EMBL:AL590487
            UniGene:Hs.516160 HGNC:HGNC:10771 IPI:IPI00644485 SMR:Q5SZ64
            MINT:MINT-1440537 STRING:Q5SZ64 Ensembl:ENST00000457312
            Uniprot:Q5SZ64
        Length = 190

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 30/77 (38%), Positives = 49/77 (63%)

Query:    39 NLFVSGLSKRTTDETLRDTFSAFGEVVHA-KIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
             N+F+  L     ++ L DTFSAFG ++   KI++  ++G SKG+ F+ +A+ +A+  AIE
Sbjct:    58 NIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIE 117

Query:    98 GMDGKFLDGWVIFVEYA 114
              M+G++L    I V YA
Sbjct:   118 AMNGQYLCNRPITVSYA 134


>UNIPROTKB|Q60A61 [details] [associations]
            symbol:MCA1010 "RNA-binding protein" species:243233
            "Methylococcus capsulatus str. Bath" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE017282
            GenomeReviews:AE017282_GR HOGENOM:HOG000276232 RefSeq:YP_113486.1
            ProteinModelPortal:Q60A61 GeneID:3102652 KEGG:mca:MCA1010
            PATRIC:22605822 OMA:LAFHSTE Uniprot:Q60A61
        Length = 95

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 32/79 (40%), Positives = 49/79 (62%)

Query:    38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
             + L+V  L+ R  D  L  TF+A+G V  A++V  R +G S+GFGFV+  + + A  AI 
Sbjct:     3 SKLYVGNLNYRVGDADLERTFAAYGTVKSAQVVMDRATGRSRGFGFVEMGSDQEAQAAIA 62

Query:    98 GMDGKFLDGWVIFVEYAKP 116
             G++GK +DG  + V  A+P
Sbjct:    63 GLNGKEMDGRNLMVNEARP 81


>UNIPROTKB|P61286 [details] [associations]
            symbol:PABPC1 "Polyadenylate-binding protein 1"
            species:9913 "Bos taurus" [GO:0005515 "protein binding"
            evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
            evidence=ISS] [GO:2000623 "negative regulation of
            nuclear-transcribed mRNA catabolic process, nonsense-mediated
            decay" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
            evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
            [GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008380
            "RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
            process, nonsense-mediated decay" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000184 GO:GO:0008380
            GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0071013
            GO:GO:0010494 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            EMBL:AJ401269 EMBL:BC102365 IPI:IPI00705440 RefSeq:NP_776993.1
            UniGene:Bt.53579 ProteinModelPortal:P61286 SMR:P61286 PRIDE:P61286
            Ensembl:ENSBTAT00000064237 GeneID:282296 KEGG:bta:282296 CTD:26986
            GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
            BindingDB:P61286 NextBio:20806097 GO:GO:2000623 Uniprot:P61286
        Length = 636

 Score = 160 (61.4 bits), Expect = 1.0e-10, P = 1.0e-10
 Identities = 45/118 (38%), Positives = 61/118 (51%)

Query:    10 PRGLRRLFSTSPFSSSLNPPQR---PQAEPST------NLFVSGLSKRTTDETLRDTFSA 60
             P    R   T  F      P R    Q +PS       N+F+  L K   ++ L DTFSA
Sbjct:    62 PADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSA 121

Query:    61 FGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKPRQ 118
             FG ++  K+V   E+G SKG+GFV + T EAA +AIE M+G  L+   +FV   K R+
Sbjct:   122 FGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 177

 Score = 151 (58.2 bits), Expect = 9.5e-10, P = 9.5e-10
 Identities = 33/85 (38%), Positives = 51/85 (60%)

Query:    33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
             +A+  TN+++    +   DE L+D F  FG  +  K++   ESG SKGFGFV +   E A
Sbjct:   186 RAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDA 244

Query:    93 GKAIEGMDGKFLDGWVIFVEYAKPR 117
              KA++ M+GK L+G  I+V  A+ +
Sbjct:   245 QKAVDEMNGKELNGKQIYVGRAQKK 269

 Score = 136 (52.9 bits), Expect = 3.9e-08, P = 3.9e-08
 Identities = 31/80 (38%), Positives = 47/80 (58%)

Query:    39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
             NL+V  L     DE LR  FS FG +  AK++   E G SKGFGFV +++ E A KA+  
Sbjct:   295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTE 352

Query:    99 MDGKFLDGWVIFVEYAKPRQ 118
             M+G+ +    ++V  A+ ++
Sbjct:   353 MNGRIVATKPLYVALAQRKE 372


>UNIPROTKB|J9P326 [details] [associations]
            symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
            OMA:TITSAKX EMBL:AAEX03008681 RefSeq:XP_856708.1
            ProteinModelPortal:J9P326 Ensembl:ENSCAFT00000042991 GeneID:612751
            KEGG:cfa:612751 Uniprot:J9P326
        Length = 636

 Score = 160 (61.4 bits), Expect = 1.0e-10, P = 1.0e-10
 Identities = 45/118 (38%), Positives = 61/118 (51%)

Query:    10 PRGLRRLFSTSPFSSSLNPPQR---PQAEPST------NLFVSGLSKRTTDETLRDTFSA 60
             P    R   T  F      P R    Q +PS       N+F+  L K   ++ L DTFSA
Sbjct:    62 PADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSA 121

Query:    61 FGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKPRQ 118
             FG ++  K+V   E+G SKG+GFV + T EAA +AIE M+G  L+   +FV   K R+
Sbjct:   122 FGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 177

 Score = 151 (58.2 bits), Expect = 9.5e-10, P = 9.5e-10
 Identities = 33/85 (38%), Positives = 51/85 (60%)

Query:    33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
             +A+  TN+++    +   DE L+D F  FG  +  K++   ESG SKGFGFV +   E A
Sbjct:   186 RAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDA 244

Query:    93 GKAIEGMDGKFLDGWVIFVEYAKPR 117
              KA++ M+GK L+G  I+V  A+ +
Sbjct:   245 QKAVDEMNGKELNGKQIYVGRAQKK 269

 Score = 136 (52.9 bits), Expect = 3.9e-08, P = 3.9e-08
 Identities = 31/80 (38%), Positives = 47/80 (58%)

Query:    39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
             NL+V  L     DE LR  FS FG +  AK++   E G SKGFGFV +++ E A KA+  
Sbjct:   295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTE 352

Query:    99 MDGKFLDGWVIFVEYAKPRQ 118
             M+G+ +    ++V  A+ ++
Sbjct:   353 MNGRIVATKPLYVALAQRKE 372


>UNIPROTKB|P11940 [details] [associations]
            symbol:PABPC1 "Polyadenylate-binding protein 1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IDA;TAS]
            [GO:0006378 "mRNA polyadenylation" evidence=TAS] [GO:0005737
            "cytoplasm" evidence=IDA;TAS] [GO:0048255 "mRNA stabilization"
            evidence=TAS] [GO:0008494 "translation activator activity"
            evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0008022 "protein C-terminus binding" evidence=IPI] [GO:0071013
            "catalytic step 2 spliceosome" evidence=IDA] [GO:0030529
            "ribonucleoprotein complex" evidence=IDA] [GO:0000398 "mRNA
            splicing, via spliceosome" evidence=IC] [GO:2000623 "negative
            regulation of nuclear-transcribed mRNA catabolic process,
            nonsense-mediated decay" evidence=IDA] [GO:0010494 "cytoplasmic
            stress granule" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0000184 "nuclear-transcribed mRNA catabolic process,
            nonsense-mediated decay" evidence=TAS] [GO:0000288
            "nuclear-transcribed mRNA catabolic process,
            deadenylation-dependent decay" evidence=TAS] [GO:0000289
            "nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
            [GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
            evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
            [GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
            metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
            process" evidence=TAS] [GO:0044267 "cellular protein metabolic
            process" evidence=TAS] [GO:0045727 "positive regulation of
            translation" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
            Reactome:REACT_17015 InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0005829 GO:GO:0000184 GO:GO:0000166 GO:GO:0006413
            Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0008494 GO:GO:0048255
            GO:GO:0000398 GO:GO:0071013 PDB:3KTR PDBsum:3KTR GO:GO:0010494
            eggNOG:COG0724 GO:GO:0000289 GO:GO:0008143 HOVERGEN:HBG002295
            Reactome:REACT_1762 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 PDB:3KUI PDBsum:3KUI
            PDB:2RQG PDB:2RQH PDBsum:2RQG PDBsum:2RQH PDB:3KUJ PDBsum:3KUJ
            PDB:4F02 PDBsum:4F02 PDB:3PTH PDBsum:3PTH PDB:3PKN PDBsum:3PKN
            CTD:26986 OMA:TITSAKX OrthoDB:EOG40ZQX5 GO:GO:2000623 EMBL:Y00345
            EMBL:U68104 EMBL:U68093 EMBL:U68094 EMBL:U68095 EMBL:U68097
            EMBL:U68098 EMBL:U68099 EMBL:U68100 EMBL:U68101 EMBL:U68102
            EMBL:U68103 EMBL:AP001205 EMBL:BC015958 EMBL:BC023520 EMBL:Z48501
            IPI:IPI00008524 IPI:IPI00410017 PIR:A93668 PIR:S52491
            RefSeq:NP_002559.2 UniGene:Hs.387804 PDB:1CVJ PDB:1G9L PDB:1JGN
            PDB:1JH4 PDB:2K8G PDB:2X04 PDB:3KTP PDB:3KUR PDB:3KUS PDB:3KUT
            PDB:4F25 PDB:4F26 PDBsum:1CVJ PDBsum:1G9L PDBsum:1JGN PDBsum:1JH4
            PDBsum:2K8G PDBsum:2X04 PDBsum:3KTP PDBsum:3KUR PDBsum:3KUS
            PDBsum:3KUT PDBsum:4F25 PDBsum:4F26 ProteinModelPortal:P11940
            SMR:P11940 DIP:DIP-31613N IntAct:P11940 MINT:MINT-96210
            STRING:P11940 PhosphoSite:P11940 DMDM:3183544 PaxDb:P11940
            PRIDE:P11940 DNASU:26986 Ensembl:ENST00000318607 GeneID:26986
            KEGG:hsa:26986 UCSC:uc003yjs.1 GeneCards:GC08M101715 HGNC:HGNC:8554
            HPA:CAB011536 HPA:HPA045423 MIM:604679 neXtProt:NX_P11940
            PharmGKB:PA32880 InParanoid:P11940 PhylomeDB:P11940
            BindingDB:P11940 ChEMBL:CHEMBL1293286 ChiTaRS:PABPC1
            EvolutionaryTrace:P11940 GenomeRNAi:26986 NextBio:49454
            PMAP-CutDB:P11940 ArrayExpress:P11940 Bgee:P11940 CleanEx:HS_PABPC1
            Genevestigator:P11940 GermOnline:ENSG00000070756 Uniprot:P11940
        Length = 636

 Score = 160 (61.4 bits), Expect = 1.0e-10, P = 1.0e-10
 Identities = 45/118 (38%), Positives = 61/118 (51%)

Query:    10 PRGLRRLFSTSPFSSSLNPPQR---PQAEPST------NLFVSGLSKRTTDETLRDTFSA 60
             P    R   T  F      P R    Q +PS       N+F+  L K   ++ L DTFSA
Sbjct:    62 PADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSA 121

Query:    61 FGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKPRQ 118
             FG ++  K+V   E+G SKG+GFV + T EAA +AIE M+G  L+   +FV   K R+
Sbjct:   122 FGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 177

 Score = 151 (58.2 bits), Expect = 9.5e-10, P = 9.5e-10
 Identities = 33/85 (38%), Positives = 51/85 (60%)

Query:    33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
             +A+  TN+++    +   DE L+D F  FG  +  K++   ESG SKGFGFV +   E A
Sbjct:   186 RAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDA 244

Query:    93 GKAIEGMDGKFLDGWVIFVEYAKPR 117
              KA++ M+GK L+G  I+V  A+ +
Sbjct:   245 QKAVDEMNGKELNGKQIYVGRAQKK 269

 Score = 136 (52.9 bits), Expect = 3.9e-08, P = 3.9e-08
 Identities = 31/80 (38%), Positives = 47/80 (58%)

Query:    39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
             NL+V  L     DE LR  FS FG +  AK++   E G SKGFGFV +++ E A KA+  
Sbjct:   295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTE 352

Query:    99 MDGKFLDGWVIFVEYAKPRQ 118
             M+G+ +    ++V  A+ ++
Sbjct:   353 MNGRIVATKPLYVALAQRKE 372


>UNIPROTKB|F2Z557 [details] [associations]
            symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
            EMBL:CU302394 RefSeq:XP_001927782.1 UniGene:Ssc.41568
            ProteinModelPortal:F2Z557 SMR:F2Z557 PRIDE:F2Z557
            Ensembl:ENSSSCT00000006652 GeneID:100153958 KEGG:ssc:100153958
            Uniprot:F2Z557
        Length = 636

 Score = 160 (61.4 bits), Expect = 1.0e-10, P = 1.0e-10
 Identities = 45/118 (38%), Positives = 61/118 (51%)

Query:    10 PRGLRRLFSTSPFSSSLNPPQR---PQAEPST------NLFVSGLSKRTTDETLRDTFSA 60
             P    R   T  F      P R    Q +PS       N+F+  L K   ++ L DTFSA
Sbjct:    62 PADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSA 121

Query:    61 FGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKPRQ 118
             FG ++  K+V   E+G SKG+GFV + T EAA +AIE M+G  L+   +FV   K R+
Sbjct:   122 FGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 177

 Score = 151 (58.2 bits), Expect = 9.5e-10, P = 9.5e-10
 Identities = 33/85 (38%), Positives = 51/85 (60%)

Query:    33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
             +A+  TN+++    +   DE L+D F  FG  +  K++   ESG SKGFGFV +   E A
Sbjct:   186 RAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDA 244

Query:    93 GKAIEGMDGKFLDGWVIFVEYAKPR 117
              KA++ M+GK L+G  I+V  A+ +
Sbjct:   245 QKAVDEMNGKELNGKQIYVGRAQKK 269

 Score = 136 (52.9 bits), Expect = 3.9e-08, P = 3.9e-08
 Identities = 31/80 (38%), Positives = 47/80 (58%)

Query:    39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
             NL+V  L     DE LR  FS FG +  AK++   E G SKGFGFV +++ E A KA+  
Sbjct:   295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTE 352

Query:    99 MDGKFLDGWVIFVEYAKPRQ 118
             M+G+ +    ++V  A+ ++
Sbjct:   353 MNGRIVATKPLYVALAQRKE 372


>UNIPROTKB|Q5R8F7 [details] [associations]
            symbol:PABPC1 "Polyadenylate-binding protein 1"
            species:9601 "Pongo abelii" [GO:0010494 "cytoplasmic stress
            granule" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
            evidence=ISS] [GO:2000623 "negative regulation of
            nuclear-transcribed mRNA catabolic process, nonsense-mediated
            decay" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0010494
            HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 HSSP:P11940 GO:GO:2000623 EMBL:CR859795
            RefSeq:NP_001128842.1 UniGene:Pab.18910 ProteinModelPortal:Q5R8F7
            SMR:Q5R8F7 PRIDE:Q5R8F7 GeneID:100189758 KEGG:pon:100189758
            InParanoid:Q5R8F7 Uniprot:Q5R8F7
        Length = 636

 Score = 160 (61.4 bits), Expect = 1.0e-10, P = 1.0e-10
 Identities = 45/118 (38%), Positives = 61/118 (51%)

Query:    10 PRGLRRLFSTSPFSSSLNPPQR---PQAEPST------NLFVSGLSKRTTDETLRDTFSA 60
             P    R   T  F      P R    Q +PS       N+F+  L K   ++ L DTFSA
Sbjct:    62 PADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSA 121

Query:    61 FGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKPRQ 118
             FG ++  K+V   E+G SKG+GFV + T EAA +AIE M+G  L+   +FV   K R+
Sbjct:   122 FGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 177

 Score = 151 (58.2 bits), Expect = 9.5e-10, P = 9.5e-10
 Identities = 33/85 (38%), Positives = 51/85 (60%)

Query:    33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
             +A+  TN+++    +   DE L+D F  FG  +  K++   ESG SKGFGFV +   E A
Sbjct:   186 RAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDA 244

Query:    93 GKAIEGMDGKFLDGWVIFVEYAKPR 117
              KA++ M+GK L+G  I+V  A+ +
Sbjct:   245 QKAVDEMNGKELNGKQIYVGRAQKK 269

 Score = 136 (52.9 bits), Expect = 3.9e-08, P = 3.9e-08
 Identities = 31/80 (38%), Positives = 47/80 (58%)

Query:    39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
             NL+V  L     DE LR  FS FG +  AK++   E G SKGFGFV +++ E A KA+  
Sbjct:   295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTE 352

Query:    99 MDGKFLDGWVIFVEYAKPRQ 118
             M+G+ +    ++V  A+ ++
Sbjct:   353 MNGRIVATKPLYVALAQRKE 372


>MGI|MGI:1349722 [details] [associations]
            symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
            process, nonsense-mediated decay" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005515
            "protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
            [GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0008022 "protein C-terminus binding"
            evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO]
            [GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
            stress granule" evidence=ISO] [GO:0030529 "ribonucleoprotein
            complex" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=ISO] [GO:2000623 "negative regulation of
            nuclear-transcribed mRNA catabolic process, nonsense-mediated
            decay" evidence=ISO] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            MGI:MGI:1349722 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494
            eggNOG:COG0724 GO:GO:0008143 EMBL:CH466541 HOVERGEN:HBG002295
            KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            HOGENOM:HOG000217922 HSSP:P11940 CTD:26986
            GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
            GO:GO:2000623 ChiTaRS:PABPC1 EMBL:X65553 EMBL:AK044829
            EMBL:AK133196 EMBL:AK159703 EMBL:AK159733 EMBL:AK160968
            EMBL:AK161123 EMBL:AK161671 EMBL:AK168466 EMBL:BC003870
            EMBL:BC011207 EMBL:BC023145 EMBL:BC046233 IPI:IPI00124287
            PIR:I48718 RefSeq:NP_032800.2 UniGene:Mm.371570
            ProteinModelPortal:P29341 SMR:P29341 DIP:DIP-32127N IntAct:P29341
            STRING:P29341 PhosphoSite:P29341 REPRODUCTION-2DPAGE:P29341
            PaxDb:P29341 PRIDE:P29341 Ensembl:ENSMUST00000001809 GeneID:18458
            KEGG:mmu:18458 InParanoid:Q99L36 NextBio:294152 Bgee:P29341
            CleanEx:MM_PABPC1 Genevestigator:P29341
            GermOnline:ENSMUSG00000022283 Uniprot:P29341
        Length = 636

 Score = 160 (61.4 bits), Expect = 1.0e-10, P = 1.0e-10
 Identities = 45/118 (38%), Positives = 61/118 (51%)

Query:    10 PRGLRRLFSTSPFSSSLNPPQR---PQAEPST------NLFVSGLSKRTTDETLRDTFSA 60
             P    R   T  F      P R    Q +PS       N+F+  L K   ++ L DTFSA
Sbjct:    62 PADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSA 121

Query:    61 FGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKPRQ 118
             FG ++  K+V   E+G SKG+GFV + T EAA +AIE M+G  L+   +FV   K R+
Sbjct:   122 FGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 177

 Score = 147 (56.8 bits), Expect = 2.6e-09, P = 2.6e-09
 Identities = 32/85 (37%), Positives = 51/85 (60%)

Query:    33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
             +A+  TN+++    +   DE L++ F  FG  +  K++   ESG SKGFGFV +   E A
Sbjct:   186 RAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDA 244

Query:    93 GKAIEGMDGKFLDGWVIFVEYAKPR 117
              KA++ M+GK L+G  I+V  A+ +
Sbjct:   245 QKAVDEMNGKELNGKQIYVGRAQKK 269

 Score = 136 (52.9 bits), Expect = 3.9e-08, P = 3.9e-08
 Identities = 31/80 (38%), Positives = 47/80 (58%)

Query:    39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
             NL+V  L     DE LR  FS FG +  AK++   E G SKGFGFV +++ E A KA+  
Sbjct:   295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTE 352

Query:    99 MDGKFLDGWVIFVEYAKPRQ 118
             M+G+ +    ++V  A+ ++
Sbjct:   353 MNGRIVATKPLYVALAQRKE 372


>RGD|619838 [details] [associations]
            symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
            process, nonsense-mediated decay" evidence=IEA] [GO:0003729 "mRNA
            binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISO]
            [GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0008022 "protein C-terminus binding"
            evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO;ISS]
            [GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
            stress granule" evidence=ISO;ISS] [GO:0030529 "ribonucleoprotein
            complex" evidence=ISO;ISS] [GO:0071013 "catalytic step 2
            spliceosome" evidence=ISO] [GO:2000623 "negative regulation of
            nuclear-transcribed mRNA catabolic process, nonsense-mediated
            decay" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            RGD:619838 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494 eggNOG:COG0724
            GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
            SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 CTD:26986
            GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
            GO:GO:2000623 EMBL:AJ298278 EMBL:BC083176 IPI:IPI00189074
            RefSeq:NP_599180.1 UniGene:Rn.127813 UniGene:Rn.29024
            ProteinModelPortal:Q9EPH8 SMR:Q9EPH8 IntAct:Q9EPH8
            MINT:MINT-4576919 STRING:Q9EPH8 PhosphoSite:Q9EPH8 PRIDE:Q9EPH8
            Ensembl:ENSRNOT00000012775 GeneID:171350 KEGG:rno:171350
            UCSC:RGD:619838 InParanoid:Q9EPH8 NextBio:622119
            Genevestigator:Q9EPH8 GermOnline:ENSRNOG00000008639 Uniprot:Q9EPH8
        Length = 636

 Score = 160 (61.4 bits), Expect = 1.0e-10, P = 1.0e-10
 Identities = 45/118 (38%), Positives = 61/118 (51%)

Query:    10 PRGLRRLFSTSPFSSSLNPPQR---PQAEPST------NLFVSGLSKRTTDETLRDTFSA 60
             P    R   T  F      P R    Q +PS       N+F+  L K   ++ L DTFSA
Sbjct:    62 PADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSA 121

Query:    61 FGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKPRQ 118
             FG ++  K+V   E+G SKG+GFV + T EAA +AIE M+G  L+   +FV   K R+
Sbjct:   122 FGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 177

 Score = 147 (56.8 bits), Expect = 2.6e-09, P = 2.6e-09
 Identities = 32/85 (37%), Positives = 51/85 (60%)

Query:    33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
             +A+  TN+++    +   DE L++ F  FG  +  K++   ESG SKGFGFV +   E A
Sbjct:   186 RAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDA 244

Query:    93 GKAIEGMDGKFLDGWVIFVEYAKPR 117
              KA++ M+GK L+G  I+V  A+ +
Sbjct:   245 QKAVDEMNGKELNGKQIYVGRAQKK 269

 Score = 136 (52.9 bits), Expect = 3.9e-08, P = 3.9e-08
 Identities = 31/80 (38%), Positives = 47/80 (58%)

Query:    39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
             NL+V  L     DE LR  FS FG +  AK++   E G SKGFGFV +++ E A KA+  
Sbjct:   295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTE 352

Query:    99 MDGKFLDGWVIFVEYAKPRQ 118
             M+G+ +    ++V  A+ ++
Sbjct:   353 MNGRIVATKPLYVALAQRKE 372


>UNIPROTKB|I3LS00 [details] [associations]
            symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:2000623 "negative regulation of nuclear-transcribed
            mRNA catabolic process, nonsense-mediated decay" evidence=IEA]
            [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
            [GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0008143
            "poly(A) RNA binding" evidence=IEA] [GO:0008022 "protein C-terminus
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0071013 GO:GO:0010494
            GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
            GO:GO:2000623 EMBL:CU302394 Ensembl:ENSSSCT00000032533
            Uniprot:I3LS00
        Length = 647

 Score = 160 (61.4 bits), Expect = 1.1e-10, P = 1.1e-10
 Identities = 45/118 (38%), Positives = 61/118 (51%)

Query:    10 PRGLRRLFSTSPFSSSLNPPQR---PQAEPST------NLFVSGLSKRTTDETLRDTFSA 60
             P    R   T  F      P R    Q +PS       N+F+  L K   ++ L DTFSA
Sbjct:    62 PADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSA 121

Query:    61 FGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKPRQ 118
             FG ++  K+V   E+G SKG+GFV + T EAA +AIE M+G  L+   +FV   K R+
Sbjct:   122 FGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 177

 Score = 151 (58.2 bits), Expect = 9.8e-10, P = 9.8e-10
 Identities = 33/85 (38%), Positives = 51/85 (60%)

Query:    33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
             +A+  TN+++    +   DE L+D F  FG  +  K++   ESG SKGFGFV +   E A
Sbjct:   186 RAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDA 244

Query:    93 GKAIEGMDGKFLDGWVIFVEYAKPR 117
              KA++ M+GK L+G  I+V  A+ +
Sbjct:   245 QKAVDEMNGKELNGKQIYVGRAQKK 269

 Score = 136 (52.9 bits), Expect = 4.0e-08, P = 4.0e-08
 Identities = 31/80 (38%), Positives = 47/80 (58%)

Query:    39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
             NL+V  L     DE LR  FS FG +  AK++   E G SKGFGFV +++ E A KA+  
Sbjct:   295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTE 352

Query:    99 MDGKFLDGWVIFVEYAKPRQ 118
             M+G+ +    ++V  A+ ++
Sbjct:   353 MNGRIVATKPLYVALAQRKE 372


>UNIPROTKB|H3BPI5 [details] [associations]
            symbol:PABPC3 "Polyadenylate-binding protein 3"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AL359757 HGNC:HGNC:8556 ProteinModelPortal:H3BPI5 SMR:H3BPI5
            Ensembl:ENST00000562709 Bgee:H3BPI5 Uniprot:H3BPI5
        Length = 255

 Score = 151 (58.2 bits), Expect = 1.1e-10, P = 1.1e-10
 Identities = 35/80 (43%), Positives = 50/80 (62%)

Query:    39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
             N+FV  L K   ++ L DT SAFG ++   +V   E+G SKG+GFV + T EAA +AI+ 
Sbjct:   100 NIFVKNLDKSINNKALYDTVSAFGNILSCNVVCD-ENG-SKGYGFVHFETHEAAERAIKK 157

Query:    99 MDGKFLDGWVIFVEYAKPRQ 118
             M+G  L+G  +FV   K R+
Sbjct:   158 MNGMLLNGRKVFVGQFKSRK 177

 Score = 129 (50.5 bits), Expect = 3.8e-08, P = 3.8e-08
 Identities = 27/70 (38%), Positives = 41/70 (58%)

Query:    33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
             +A+   N+++    +   DE L+D F  FG  +  K++   ESG SKGFGFV +   E A
Sbjct:   186 RAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDA 244

Query:    93 GKAIEGMDGK 102
              KA++ M+GK
Sbjct:   245 QKAVDEMNGK 254


>UNIPROTKB|H0YBQ4 [details] [associations]
            symbol:PABPC1 "Polyadenylate-binding protein 1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519596
            Uniprot:H0YBQ4
        Length = 258

 Score = 151 (58.2 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 33/85 (38%), Positives = 51/85 (60%)

Query:    33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
             +A+  TN+++    +   DE L+D F  FG  +  K++   ESG SKGFGFV +   E A
Sbjct:    19 RAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDA 77

Query:    93 GKAIEGMDGKFLDGWVIFVEYAKPR 117
              KA++ M+GK L+G  I+V  A+ +
Sbjct:    78 QKAVDEMNGKELNGKQIYVGRAQKK 102

 Score = 136 (52.9 bits), Expect = 6.3e-09, P = 6.3e-09
 Identities = 31/80 (38%), Positives = 47/80 (58%)

Query:    39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
             NL+V  L     DE LR  FS FG +  AK++   E G SKGFGFV +++ E A KA+  
Sbjct:   128 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTE 185

Query:    99 MDGKFLDGWVIFVEYAKPRQ 118
             M+G+ +    ++V  A+ ++
Sbjct:   186 MNGRIVATKPLYVALAQRKE 205


>UNIPROTKB|Q3SZN4 [details] [associations]
            symbol:CIRBP "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
            "mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
            of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
            evidence=IEA] [GO:0030371 "translation repressor activity"
            evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
            evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
            GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
            GO:GO:0034063 eggNOG:COG0724 GO:GO:0070181 KO:K13195 CTD:1153
            HOGENOM:HOG000276232 OMA:ENRSRGY OrthoDB:EOG4HHP40
            GeneTree:ENSGT00700000104309 EMBL:DAAA02020258 EMBL:BC102773
            IPI:IPI00702406 RefSeq:NP_001029450.1 UniGene:Bt.23273 SMR:Q3SZN4
            Ensembl:ENSBTAT00000004477 GeneID:507120 KEGG:bta:507120
            InParanoid:Q3SZN4 NextBio:20867909 Uniprot:Q3SZN4
        Length = 213

 Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 32/81 (39%), Positives = 48/81 (59%)

Query:    34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAG 93
             A     LFV GLS  T +++L   FS +G++    +VK RE+  S+GFGFV +  ++ A 
Sbjct:     2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61

Query:    94 KAIEGMDGKFLDGWVIFVEYA 114
              A+  M+GK +DG  I V+ A
Sbjct:    62 DAMMAMNGKSVDGRQIRVDQA 82


>UNIPROTKB|Q3ZCE8 [details] [associations]
            symbol:RBM8A "RNA-binding protein 8A" species:9913 "Bos
            taurus" [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0071013 "catalytic step 2
            spliceosome" evidence=IEA] [GO:0035145 "exon-exon junction complex"
            evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
            process, nonsense-mediated decay" evidence=IEA] [GO:0051028 "mRNA
            transport" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
            [GO:0006417 "regulation of translation" evidence=IEA] [GO:0006397
            "mRNA processing" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR008111 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005737 GO:GO:0006417 GO:GO:0000184 GO:GO:0008380
            GO:GO:0000166 GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0003723 GO:GO:0051028 GO:GO:0071013 eggNOG:COG0724
            GO:GO:0035145 GeneTree:ENSGT00550000074641 HSSP:P52298
            EMBL:BT025376 EMBL:BC102484 IPI:IPI00705285 IPI:IPI00939094
            RefSeq:NP_001030401.1 UniGene:Bt.49450 ProteinModelPortal:Q3ZCE8
            SMR:Q3ZCE8 STRING:Q3ZCE8 PRIDE:Q3ZCE8 Ensembl:ENSBTAT00000011016
            GeneID:518045 KEGG:bta:518045 CTD:9939 HOGENOM:HOG000183826
            HOVERGEN:HBG055173 InParanoid:Q3ZCE8 KO:K12876 OMA:WILFVTS
            OrthoDB:EOG42822W NextBio:20872569 Uniprot:Q3ZCE8
        Length = 174

 Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 30/81 (37%), Positives = 50/81 (61%)

Query:    40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
             LFV+G+ +  T+E + D F+ +GE+ +  +   R +GY KG+  V+Y T + A  A+EG+
Sbjct:    75 LFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGL 134

Query:   100 DGKFLDGWVIFVEYAKPRQPP 120
             +G+ L G  I V++   R PP
Sbjct:   135 NGQDLMGQPISVDWCFVRGPP 155


>UNIPROTKB|E2QV85 [details] [associations]
            symbol:RBM8A "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
            evidence=IEA] [GO:0035145 "exon-exon junction complex"
            evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
            process, nonsense-mediated decay" evidence=IEA] [GO:0006396 "RNA
            processing" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR008111
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005737 GO:GO:0000184 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396 GO:GO:0071013
            GO:GO:0035145 ProteinModelPortal:E2QV85 Ensembl:ENSCAFT00000017835
            Uniprot:E2QV85
        Length = 177

 Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 30/81 (37%), Positives = 50/81 (61%)

Query:    40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
             LFV+G+ +  T+E + D F+ +GE+ +  +   R +GY KG+  V+Y T + A  A+EG+
Sbjct:    78 LFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGL 137

Query:   100 DGKFLDGWVIFVEYAKPRQPP 120
             +G+ L G  I V++   R PP
Sbjct:   138 NGQDLMGQPISVDWCFVRGPP 158


>UNIPROTKB|E2R6G2 [details] [associations]
            symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            ProteinModelPortal:E2R6G2 Ensembl:ENSCAFT00000031013 Uniprot:E2R6G2
        Length = 172

 Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 32/81 (39%), Positives = 48/81 (59%)

Query:    34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAG 93
             A     LFV GLS  T +++L   FS +G++    +VK RE+  S+GFGFV +  ++ A 
Sbjct:     2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61

Query:    94 KAIEGMDGKFLDGWVIFVEYA 114
              A+  M+GK +DG  I V+ A
Sbjct:    62 DAMMAMNGKSVDGRQIRVDQA 82


>UNIPROTKB|E2R771 [details] [associations]
            symbol:RBM3 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
            EMBL:AAEX03026334 RefSeq:XP_863171.1 ProteinModelPortal:E2R771
            Ensembl:ENSCAFT00000024556 GeneID:609457 KEGG:cfa:609457
            Uniprot:E2R771
        Length = 162

 Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 31/75 (41%), Positives = 46/75 (61%)

Query:    40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
             LFV GL+  T ++ L D F +FG +    +VK RE+  S+GFGF+ +   E A  A+  M
Sbjct:     8 LFVGGLNFNTDEQALEDHFRSFGPISEVVVVKDRETQRSRGFGFITFTDPEHASDAMRAM 67

Query:   100 DGKFLDGWVIFVEYA 114
             +G+ LDG  I V++A
Sbjct:    68 NGESLDGRQIRVDHA 82


>UNIPROTKB|F6XAE9 [details] [associations]
            symbol:RBM8A "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0006396 "RNA processing" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR008111 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396
            GeneTree:ENSGT00550000074641 CTD:9939 KO:K12876 OMA:WILFVTS
            Ensembl:ENSCAFT00000017835 EMBL:AAEX03011037 RefSeq:XP_533035.1
            ProteinModelPortal:F6XAE9 GeneID:475827 KEGG:cfa:475827
            Uniprot:F6XAE9
        Length = 174

 Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 30/81 (37%), Positives = 50/81 (61%)

Query:    40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
             LFV+G+ +  T+E + D F+ +GE+ +  +   R +GY KG+  V+Y T + A  A+EG+
Sbjct:    75 LFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGL 134

Query:   100 DGKFLDGWVIFVEYAKPRQPP 120
             +G+ L G  I V++   R PP
Sbjct:   135 NGQDLMGQPISVDWCFVRGPP 155


>UNIPROTKB|F6XHA7 [details] [associations]
            symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13195 CTD:1153
            OMA:ENRSRGY GeneTree:ENSGT00700000104309 Ensembl:ENSCAFT00000031013
            EMBL:AAEX03012655 RefSeq:XP_868600.1 GeneID:476755 KEGG:cfa:476755
            Uniprot:F6XHA7
        Length = 185

 Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 32/81 (39%), Positives = 48/81 (59%)

Query:    34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAG 93
             A     LFV GLS  T +++L   FS +G++    +VK RE+  S+GFGFV +  ++ A 
Sbjct:     2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61

Query:    94 KAIEGMDGKFLDGWVIFVEYA 114
              A+  M+GK +DG  I V+ A
Sbjct:    62 DAMMAMNGKSVDGRQIRVDQA 82


>UNIPROTKB|K7EJV5 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000588411 Uniprot:K7EJV5
        Length = 105

 Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 32/81 (39%), Positives = 48/81 (59%)

Query:    34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAG 93
             A     LFV GLS  T +++L   FS +G++    +VK RE+  S+GFGFV +  ++ A 
Sbjct:     2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61

Query:    94 KAIEGMDGKFLDGWVIFVEYA 114
              A+  M+GK +DG  I V+ A
Sbjct:    62 DAMMAMNGKSVDGRQIRVDQA 82


>UNIPROTKB|K7EMY9 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000586548 Uniprot:K7EMY9
        Length = 159

 Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 32/81 (39%), Positives = 48/81 (59%)

Query:    34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAG 93
             A     LFV GLS  T +++L   FS +G++    +VK RE+  S+GFGFV +  ++ A 
Sbjct:     2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61

Query:    94 KAIEGMDGKFLDGWVIFVEYA 114
              A+  M+GK +DG  I V+ A
Sbjct:    62 DAMMAMNGKSVDGRQIRVDQA 82


>UNIPROTKB|K7EPM4 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000585913 Ensembl:ENST00000586636
            Ensembl:ENST00000586773 Ensembl:ENST00000589235
            Ensembl:ENST00000589686 Ensembl:ENST00000591935 Uniprot:K7EPM4
        Length = 168

 Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 32/81 (39%), Positives = 48/81 (59%)

Query:    34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAG 93
             A     LFV GLS  T +++L   FS +G++    +VK RE+  S+GFGFV +  ++ A 
Sbjct:     2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61

Query:    94 KAIEGMDGKFLDGWVIFVEYA 114
              A+  M+GK +DG  I V+ A
Sbjct:    62 DAMMAMNGKSVDGRQIRVDQA 82


>UNIPROTKB|K7EQR7 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000585914 Uniprot:K7EQR7
        Length = 202

 Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 32/81 (39%), Positives = 48/81 (59%)

Query:    34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAG 93
             A     LFV GLS  T +++L   FS +G++    +VK RE+  S+GFGFV +  ++ A 
Sbjct:     2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61

Query:    94 KAIEGMDGKFLDGWVIFVEYA 114
              A+  M+GK +DG  I V+ A
Sbjct:    62 DAMMAMNGKSVDGRQIRVDQA 82


>UNIPROTKB|K7ER40 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000591659 Uniprot:K7ER40
        Length = 174

 Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 32/81 (39%), Positives = 48/81 (59%)

Query:    34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAG 93
             A     LFV GLS  T +++L   FS +G++    +VK RE+  S+GFGFV +  ++ A 
Sbjct:     2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61

Query:    94 KAIEGMDGKFLDGWVIFVEYA 114
              A+  M+GK +DG  I V+ A
Sbjct:    62 DAMMAMNGKSVDGRQIRVDQA 82


>UNIPROTKB|Q14011 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=ISS;IDA] [GO:0048255 "mRNA stabilization"
            evidence=IDA] [GO:0070181 "SSU rRNA binding" evidence=IDA]
            [GO:0030371 "translation repressor activity" evidence=ISS]
            [GO:0034063 "stress granule assembly" evidence=ISS] [GO:0009411
            "response to UV" evidence=IDA] [GO:0010494 "cytoplasmic stress
            granule" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS;IDA]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0003730 "mRNA
            3'-UTR binding" evidence=IDA] [GO:0045727 "positive regulation of
            translation" evidence=IDA] [GO:0009409 "response to cold"
            evidence=TAS] [GO:0017148 "negative regulation of translation"
            evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
            GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
            Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
            GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
            GO:GO:0070181 KO:K13195 CTD:1153 EMBL:D78134 EMBL:AF021336
            EMBL:AC004258 EMBL:BC000403 EMBL:BC000901 IPI:IPI00641579
            RefSeq:NP_001271.1 UniGene:Hs.618145 UniGene:Hs.634522 PDB:1X5S
            PDBsum:1X5S ProteinModelPortal:Q14011 SMR:Q14011 IntAct:Q14011
            MINT:MINT-5004534 STRING:Q14011 PhosphoSite:Q14011 DMDM:5921786
            REPRODUCTION-2DPAGE:IPI00180954 PaxDb:Q14011 PRIDE:Q14011
            DNASU:1153 Ensembl:ENST00000320936 GeneID:1153 KEGG:hsa:1153
            UCSC:uc002lrr.4 GeneCards:GC19P001269 HGNC:HGNC:1982 MIM:602649
            neXtProt:NX_Q14011 PharmGKB:PA26519 HOGENOM:HOG000276232
            InParanoid:Q14011 OMA:ENRSRGY OrthoDB:EOG4HHP40 PhylomeDB:Q14011
            ChiTaRS:CIRBP EvolutionaryTrace:Q14011 GenomeRNAi:1153 NextBio:4788
            ArrayExpress:Q14011 Bgee:Q14011 CleanEx:HS_CIRBP
            Genevestigator:Q14011 GermOnline:ENSG00000099622 Uniprot:Q14011
        Length = 172

 Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 32/81 (39%), Positives = 48/81 (59%)

Query:    34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAG 93
             A     LFV GLS  T +++L   FS +G++    +VK RE+  S+GFGFV +  ++ A 
Sbjct:     2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61

Query:    94 KAIEGMDGKFLDGWVIFVEYA 114
              A+  M+GK +DG  I V+ A
Sbjct:    62 DAMMAMNGKSVDGRQIRVDQA 82


>UNIPROTKB|Q9Y5S9 [details] [associations]
            symbol:RBM8A "RNA-binding protein 8A" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006417
            "regulation of translation" evidence=IEA] [GO:0016607 "nuclear
            speck" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA;NAS]
            [GO:0005737 "cytoplasm" evidence=NAS] [GO:0003729 "mRNA binding"
            evidence=NAS] [GO:0003723 "RNA binding" evidence=NAS] [GO:0005515
            "protein binding" evidence=IPI] [GO:0035145 "exon-exon junction
            complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=IC;TAS] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=IDA] [GO:0000184 "nuclear-transcribed mRNA catabolic
            process, nonsense-mediated decay" evidence=IMP;TAS] [GO:0005654
            "nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
            [GO:0006366 "transcription from RNA polymerase II promoter"
            evidence=TAS] [GO:0006369 "termination of RNA polymerase II
            transcription" evidence=TAS] [GO:0006406 "mRNA export from nucleus"
            evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
            "gene expression" evidence=TAS] [GO:0016070 "RNA metabolic process"
            evidence=TAS] [GO:0016071 "mRNA metabolic process" evidence=TAS]
            [GO:0031124 "mRNA 3'-end processing" evidence=TAS] [GO:0005730
            "nucleolus" evidence=IDA] Reactome:REACT_71 Reactome:REACT_21257
            InterPro:IPR000504 InterPro:IPR008111 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005829 GO:GO:0005654 GO:GO:0006417 GO:GO:0000184
            GO:GO:0000166 GO:GO:0016607 Reactome:REACT_1675 GO:GO:0003729
            Gene3D:3.30.70.330 TCDB:3.A.18.1.1 GO:GO:0006406 EMBL:AL160282
            GO:GO:0000398 GO:GO:0071013 Reactome:REACT_1788 eggNOG:COG0724
            GO:GO:0035145 PDB:2HYI PDB:2J0Q PDB:2J0S PDB:2XB2 PDB:3EX7
            PDBsum:2HYI PDBsum:2J0Q PDBsum:2J0S PDBsum:2XB2 PDBsum:3EX7
            GO:GO:0006369 GO:GO:0031124 Reactome:REACT_78 EMBL:CH471244
            PDB:1P27 PDBsum:1P27 CTD:9939 HOGENOM:HOG000183826
            HOVERGEN:HBG055173 KO:K12876 OMA:WILFVTS OrthoDB:EOG42822W
            EMBL:AF127761 EMBL:AF198620 EMBL:AF231511 EMBL:AF231512
            EMBL:AF299118 EMBL:AF403012 EMBL:AF182415 EMBL:AF161463
            EMBL:CR541823 EMBL:CR541805 EMBL:AK075009 EMBL:BC017088
            IPI:IPI00001757 IPI:IPI00216659 RefSeq:NP_005096.1
            RefSeq:XP_003960226.1 UniGene:Hs.591455 ProteinModelPortal:Q9Y5S9
            SMR:Q9Y5S9 DIP:DIP-33070N IntAct:Q9Y5S9 MINT:MINT-265248
            STRING:Q9Y5S9 PhosphoSite:Q9Y5S9 DMDM:10720244 PaxDb:Q9Y5S9
            PRIDE:Q9Y5S9 DNASU:9939 Ensembl:ENST00000330165
            Ensembl:ENST00000369307 Ensembl:ENST00000578414
            Ensembl:ENST00000583313 GeneID:101060541 GeneID:9939
            KEGG:hsa:101060541 KEGG:hsa:9939 UCSC:uc001ent.2 UCSC:uc001enu.2
            GeneCards:GC01P145507 HGNC:HGNC:9905 HPA:CAB012803 HPA:HPA018403
            MIM:605313 neXtProt:NX_Q9Y5S9 Orphanet:3320 PharmGKB:PA34270
            InParanoid:Q9Y5S9 PhylomeDB:Q9Y5S9 ChiTaRS:RBM8A
            EvolutionaryTrace:Q9Y5S9 GenomeRNAi:9939 NextBio:37498
            PMAP-CutDB:Q9Y5S9 Bgee:Q9Y5S9 CleanEx:HS_RBM8A
            Genevestigator:Q9Y5S9 GermOnline:ENSG00000131795 Uniprot:Q9Y5S9
        Length = 174

 Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 30/81 (37%), Positives = 50/81 (61%)

Query:    40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
             LFV+G+ +  T+E + D F+ +GE+ +  +   R +GY KG+  V+Y T + A  A+EG+
Sbjct:    75 LFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGL 134

Query:   100 DGKFLDGWVIFVEYAKPRQPP 120
             +G+ L G  I V++   R PP
Sbjct:   135 NGQDLMGQPISVDWCFVRGPP 155


>UNIPROTKB|F1S6R1 [details] [associations]
            symbol:CIRBP "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
            "mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
            of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
            evidence=IEA] [GO:0030371 "translation repressor activity"
            evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
            evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
            GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
            GO:GO:0034063 GO:GO:0070181 OMA:ENRSRGY
            GeneTree:ENSGT00700000104309 EMBL:CU929580
            Ensembl:ENSSSCT00000014671 Uniprot:F1S6R1
        Length = 172

 Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 32/81 (39%), Positives = 48/81 (59%)

Query:    34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAG 93
             A     LFV GLS  T +++L   FS +G++    +VK RE+  S+GFGFV +  ++ A 
Sbjct:     2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61

Query:    94 KAIEGMDGKFLDGWVIFVEYA 114
              A+  M+GK +DG  I V+ A
Sbjct:    62 DAMMAMNGKSVDGRQIRVDQA 82


>UNIPROTKB|I3LI59 [details] [associations]
            symbol:RBM8A "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
            [GO:0035145 "exon-exon junction complex" evidence=IEA] [GO:0000184
            "nuclear-transcribed mRNA catabolic process, nonsense-mediated
            decay" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR008111 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005737 GO:GO:0000184 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 GO:GO:0006396 GO:GO:0071013 GO:GO:0035145
            GeneTree:ENSGT00550000074641 OMA:WILFVTS EMBL:CU606940
            Ensembl:ENSSSCT00000022923 Uniprot:I3LI59
        Length = 177

 Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 30/81 (37%), Positives = 50/81 (61%)

Query:    40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
             LFV+G+ +  T+E + D F+ +GE+ +  +   R +GY KG+  V+Y T + A  A+EG+
Sbjct:    78 LFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGL 137

Query:   100 DGKFLDGWVIFVEYAKPRQPP 120
             +G+ L G  I V++   R PP
Sbjct:   138 NGQDLMGQPISVDWCFVRGPP 158


>UNIPROTKB|Q5RF83 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9601 "Pongo abelii" [GO:0003730 "mRNA 3'-UTR binding"
            evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
            "cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
            evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
            evidence=ISS] [GO:0017148 "negative regulation of translation"
            evidence=ISS] [GO:0030371 "translation repressor activity"
            evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
            [GO:0045727 "positive regulation of translation" evidence=ISS]
            [GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
            rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
            GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
            GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
            GO:GO:0070181 KO:K13195 CTD:1153 EMBL:CR857278
            RefSeq:NP_001124692.1 UniGene:Pab.19491 ProteinModelPortal:Q5RF83
            SMR:Q5RF83 PRIDE:Q5RF83 GeneID:100171539 KEGG:pon:100171539
            Uniprot:Q5RF83
        Length = 172

 Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 32/81 (39%), Positives = 48/81 (59%)

Query:    34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAG 93
             A     LFV GLS  T +++L   FS +G++    +VK RE+  S+GFGFV +  ++ A 
Sbjct:     2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61

Query:    94 KAIEGMDGKFLDGWVIFVEYA 114
              A+  M+GK +DG  I V+ A
Sbjct:    62 DAMMAMNGKSVDGRQIRVDQA 82


>RGD|1310099 [details] [associations]
            symbol:Rbm8a "RNA binding motif protein 8A" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0000184 "nuclear-transcribed mRNA catabolic process,
            nonsense-mediated decay" evidence=IEA;ISO] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO]
            [GO:0005634 "nucleus" evidence=ISO] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0006417 "regulation of translation" evidence=IEA] [GO:0008380
            "RNA splicing" evidence=IEA] [GO:0016607 "nuclear speck"
            evidence=IEA] [GO:0035145 "exon-exon junction complex"
            evidence=IEA;ISO] [GO:0051028 "mRNA transport" evidence=IEA]
            [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA;ISO]
            [GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000504
            InterPro:IPR008111 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738
            PROSITE:PS50102 SMART:SM00360 RGD:1310099 GO:GO:0005737
            GO:GO:0006417 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
            GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
            GO:GO:0051028 GO:GO:0071013 eggNOG:COG0724 GO:GO:0035145
            GeneTree:ENSGT00550000074641 CTD:9939 HOGENOM:HOG000183826
            KO:K12876 OMA:WILFVTS OrthoDB:EOG42822W EMBL:DQ359102
            IPI:IPI00210002 RefSeq:NP_001258067.1 RefSeq:XP_001059872.1
            UniGene:Rn.37716 ProteinModelPortal:Q27W01 SMR:Q27W01 STRING:Q27W01
            PhosphoSite:Q27W01 PRIDE:Q27W01 Ensembl:ENSRNOT00000028807
            GeneID:295284 KEGG:rno:295284 UCSC:RGD:1310099 InParanoid:Q27W01
            NextBio:639304 Genevestigator:Q27W01 Uniprot:Q27W01
        Length = 174

 Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 30/81 (37%), Positives = 50/81 (61%)

Query:    40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
             LFV+G+ +  T+E + D F+ +GE+ +  +   R +GY KG+  V+Y T + A  A+EG+
Sbjct:    75 LFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGL 134

Query:   100 DGKFLDGWVIFVEYAKPRQPP 120
             +G+ L G  I V++   R PP
Sbjct:   135 NGQDLMGQPISVDWCFVRGPP 155


>ZFIN|ZDB-GENE-040426-2706 [details] [associations]
            symbol:srsf2a "serine/arginine-rich splicing
            factor 2a" species:7955 "Danio rerio" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-2706
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339
            HOVERGEN:HBG107480 eggNOG:NOG254270 GeneTree:ENSGT00700000104403
            HOGENOM:HOG000276233 KO:K12891 OrthoDB:EOG4D26RH OMA:SAPPRRY
            EMBL:CR352342 EMBL:BC046045 IPI:IPI00482409 RefSeq:NP_998547.1
            UniGene:Dr.76609 SMR:Q7ZV13 STRING:Q7ZV13
            Ensembl:ENSDART00000080173 GeneID:406691 KEGG:dre:406691 CTD:406691
            InParanoid:Q7ZV13 NextBio:20818218 Uniprot:Q7ZV13
        Length = 225

 Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 36/93 (38%), Positives = 51/93 (54%)

Query:    28 PPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYA 87
             PP  P  E  T+L V  L+ RT+ ETLR  F  +G V    I + R +  S+GF FV++ 
Sbjct:     6 PP--PDVEGMTSLKVDNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFH 63

Query:    88 TLEAAGKAIEGMDGKFLDGWVIFVEYAKPRQPP 120
                 A  A++ MDG  LDG  + V+ A+  +PP
Sbjct:    64 DKRDAEDAMDAMDGALLDGRELRVQMARYGRPP 96


>RGD|1563142 [details] [associations]
            symbol:Pabpc1l "poly(A) binding protein, cytoplasmic 1-like"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1563142
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
            SUPFAM:SSF63570 TIGRFAMs:TIGR01628 OrthoDB:EOG4K6G3V
            GeneTree:ENSGT00640000091232 IPI:IPI00778604
            ProteinModelPortal:D3ZAS7 Ensembl:ENSRNOT00000055172
            UCSC:RGD:1563142 Uniprot:D3ZAS7
        Length = 607

 Score = 159 (61.0 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 35/80 (43%), Positives = 50/80 (62%)

Query:    39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
             N+F+  L     ++ L DTFS FG ++ +K+V + E G S+GFGFV + T EAA KAI  
Sbjct:   100 NIFIKNLENSIDNKALYDTFSTFGSILSSKVV-YNEHG-SRGFGFVHFETHEAAQKAINT 157

Query:    99 MDGKFLDGWVIFVEYAKPRQ 118
             M+G  L+   +FV + K RQ
Sbjct:   158 MNGMLLNDRKVFVGHFKSRQ 177

 Score = 138 (53.6 bits), Expect = 2.2e-08, P = 2.2e-08
 Identities = 28/80 (35%), Positives = 49/80 (61%)

Query:    38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
             TN++V  L     ++ L+D FS FG+    K+++   +G S+GFGF+ +   E A KA++
Sbjct:   191 TNIYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRD-SNGQSRGFGFINFEKHEEAQKAVD 249

Query:    98 GMDGKFLDGWVIFVEYAKPR 117
              M+GK + G +++V  A+ R
Sbjct:   250 HMNGKEVSGQLLYVGRAQKR 269

 Score = 138 (53.6 bits), Expect = 2.2e-08, P = 2.2e-08
 Identities = 29/89 (32%), Positives = 51/89 (57%)

Query:    30 QRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATL 89
             +R       NL+V  L     D+ L++ FS +G +  AK++   ES +SKGFGFV +++ 
Sbjct:   286 ERQNRYQGVNLYVKNLDDSINDDRLKEVFSTYGVITSAKVMT--ESSHSKGFGFVCFSSP 343

Query:    90 EAAGKAIEGMDGKFLDGWVIFVEYAKPRQ 118
             E A KA+  M+G+ +    ++V  A+ ++
Sbjct:   344 EEATKAVTEMNGRIVGTKPLYVALAQRKE 372


>UNIPROTKB|D4A964 [details] [associations]
            symbol:Tial1 "Protein Tial1" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:1595845 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            IPI:IPI00949247 Ensembl:ENSRNOT00000066938 Uniprot:D4A964
        Length = 368

 Score = 155 (59.6 bits), Expect = 1.3e-10, P = 1.3e-10
 Identities = 42/126 (33%), Positives = 63/126 (50%)

Query:     5 AAVAAPRGLRRLFSTSPFSSSLNPP-QRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGE 63
             AA+AA  G + L      + +  P  Q+       ++FV  LS   T E ++  F+ FG+
Sbjct:    80 AALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGK 139

Query:    64 VVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKPRQPPTLP 123
             +  A++VK   +G SKG+GFV +     A  AI  M G++L G  I   +A  R+PP   
Sbjct:   140 ISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWAT-RKPPAPK 198

Query:   124 SQNNTN 129
             S   TN
Sbjct:   199 STQETN 204

 Score = 120 (47.3 bits), Expect = 8.7e-07, P = 8.7e-07
 Identities = 30/103 (29%), Positives = 54/103 (52%)

Query:    33 QAEPST-NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEA 91
             Q+ P    ++  G++   TD+ +R TFS FG+++  ++    E GYS    FV+++T E+
Sbjct:   216 QSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFP--EKGYS----FVRFSTHES 269

Query:    92 AGKAIEGMDGKFLDGWVIFVEYAKPRQPPTLPSQNNTNFQYGR 134
             A  AI  ++G  ++G V+   + K     T   Q     Q+G+
Sbjct:   270 AAHAIVSVNGTTIEGHVVKCYWGKESPDMTKNFQQVDYSQWGQ 312


>ZFIN|ZDB-GENE-050308-1 [details] [associations]
            symbol:pabpc1b "poly A binding protein, cytoplasmic 1
            b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-050308-1 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 eggNOG:COG0724
            HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
            GeneTree:ENSGT00640000091232 EMBL:CU468682 EMBL:CU468824
            EMBL:BC059662 EMBL:BC063948 IPI:IPI00493464 RefSeq:NP_957176.1
            UniGene:Dr.99377 SMR:Q6P3L1 STRING:Q6P3L1
            Ensembl:ENSDART00000032474 GeneID:393856 KEGG:dre:393856 CTD:393856
            InParanoid:Q6P3L1 NextBio:20814840 Uniprot:Q6P3L1
        Length = 634

 Score = 159 (61.0 bits), Expect = 1.3e-10, P = 1.3e-10
 Identities = 45/118 (38%), Positives = 61/118 (51%)

Query:    10 PRGLRRLFSTSPFSSSLNPPQR---PQAEPST------NLFVSGLSKRTTDETLRDTFSA 60
             P    R   T  F      P R    Q +PS       N+F+  L K   ++ L DTFSA
Sbjct:    62 PADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSA 121

Query:    61 FGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKPRQ 118
             FG ++  K+V   E+G SKG+GFV + T EAA +AIE M+G  L+   +FV   K R+
Sbjct:   122 FGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 177

 Score = 138 (53.6 bits), Expect = 2.3e-08, P = 2.3e-08
 Identities = 27/85 (31%), Positives = 53/85 (62%)

Query:    33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
             +A+  TN+++    +   D+ L+D FS +G  +  +++   E+G S+GFGFV +   E A
Sbjct:   186 RAKEFTNVYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTD-ENGKSRGFGFVSFERHEDA 244

Query:    93 GKAIEGMDGKFLDGWVIFVEYAKPR 117
              +A++ M+GK ++G +I+V  A+ +
Sbjct:   245 QRAVDEMNGKEMNGKLIYVGRAQKK 269

 Score = 133 (51.9 bits), Expect = 8.1e-08, P = 8.1e-08
 Identities = 30/80 (37%), Positives = 47/80 (58%)

Query:    39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
             NL+V  L     DE LR  FS FG +  AK++   + G SKGFGFV +++ E A KA+  
Sbjct:   295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--DGGRSKGFGFVCFSSPEEATKAVTE 352

Query:    99 MDGKFLDGWVIFVEYAKPRQ 118
             M+G+ +    ++V  A+ ++
Sbjct:   353 MNGRIVATKPLYVALAQRKE 372


>UNIPROTKB|F1LQ36 [details] [associations]
            symbol:Tial1 "Protein Tial1" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
            development" evidence=IEA] [GO:0008284 "positive regulation of cell
            proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
            granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
            evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 RGD:1595845 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
            Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
            GO:GO:0017145 GeneTree:ENSGT00680000099967 IPI:IPI00555194
            Ensembl:ENSRNOT00000027463 Uniprot:F1LQ36
        Length = 371

 Score = 155 (59.6 bits), Expect = 1.3e-10, P = 1.3e-10
 Identities = 42/126 (33%), Positives = 63/126 (50%)

Query:     5 AAVAAPRGLRRLFSTSPFSSSLNPP-QRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGE 63
             AA+AA  G + L      + +  P  Q+       ++FV  LS   T E ++  F+ FG+
Sbjct:    80 AALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGK 139

Query:    64 VVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKPRQPPTLP 123
             +  A++VK   +G SKG+GFV +     A  AI  M G++L G  I   +A  R+PP   
Sbjct:   140 ISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWAT-RKPPAPK 198

Query:   124 SQNNTN 129
             S   TN
Sbjct:   199 STQETN 204

 Score = 120 (47.3 bits), Expect = 8.8e-07, P = 8.8e-07
 Identities = 30/103 (29%), Positives = 54/103 (52%)

Query:    33 QAEPST-NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEA 91
             Q+ P    ++  G++   TD+ +R TFS FG+++  ++    E GYS    FV+++T E+
Sbjct:   216 QSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFP--EKGYS----FVRFSTHES 269

Query:    92 AGKAIEGMDGKFLDGWVIFVEYAKPRQPPTLPSQNNTNFQYGR 134
             A  AI  ++G  ++G V+   + K     T   Q     Q+G+
Sbjct:   270 AAHAIVSVNGTTIEGHVVKCYWGKESPDMTKNFQQVDYSQWGQ 312


>TAIR|locus:2049721 [details] [associations]
            symbol:AT2G37220 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
            evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
            [GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
            [GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009409
            "response to cold" evidence=IEP;RCA] [GO:0010319 "stromule"
            evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
            [GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009737
            "response to abscisic acid stimulus" evidence=IEP] [GO:0009534
            "chloroplast thylakoid" evidence=IDA] [GO:0009697 "salicylic acid
            biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
            incompatible interaction" evidence=RCA] [GO:0019684
            "photosynthesis, light reaction" evidence=RCA] [GO:0042742 "defense
            response to bacterium" evidence=RCA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0009737 GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR
            GO:GO:0008266 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AC005896
            GO:GO:0030529 GO:GO:0009535 GO:GO:0010319 eggNOG:COG0724
            HOGENOM:HOG000276232 EMBL:AC006260 KO:K11294 EMBL:AF370167
            EMBL:AY048251 EMBL:AY059129 IPI:IPI00540246 PIR:A84790
            RefSeq:NP_181259.1 UniGene:At.25300 ProteinModelPortal:Q9ZUU4
            SMR:Q9ZUU4 IntAct:Q9ZUU4 STRING:Q9ZUU4 SWISS-2DPAGE:Q9ZUU4
            PaxDb:Q9ZUU4 PRIDE:Q9ZUU4 ProMEX:Q9ZUU4 EnsemblPlants:AT2G37220.1
            GeneID:818299 KEGG:ath:AT2G37220 GeneFarm:4058 TAIR:At2g37220
            InParanoid:Q9ZUU4 OMA:PFNVDSA PhylomeDB:Q9ZUU4
            ProtClustDB:CLSN2684922 Genevestigator:Q9ZUU4 GermOnline:AT2G37220
            Uniprot:Q9ZUU4
        Length = 289

 Score = 152 (58.6 bits), Expect = 1.4e-10, P = 1.4e-10
 Identities = 41/109 (37%), Positives = 54/109 (49%)

Query:    11 RGLRRLFSTSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIV 70
             RG R  F +S   S         A     ++V  LS    D  L   FS  G+VV A+++
Sbjct:   179 RGPRSSFGSS--GSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVI 236

Query:    71 KHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKPRQP 119
               R+SG SKGFGFV Y + +    AI+ +DG  LDG  I V  A+ R P
Sbjct:   237 YDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEARPP 285

 Score = 100 (40.3 bits), Expect = 8.6e-05, P = 8.6e-05
 Identities = 32/118 (27%), Positives = 49/118 (41%)

Query:     9 APRGLRRLFSTSPFS------SSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFG 62
             A R  R +  TS F       + + PP+         LFV  L        L   F + G
Sbjct:    56 ASRFARNVAITSEFEVEEDGFADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAG 115

Query:    63 EVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKPRQPP 120
              V   +++  + +G S+GFGFV  +++     A +  +G  LDG  + V    P  PP
Sbjct:   116 NVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPP--PP 171


>UNIPROTKB|F1NH81 [details] [associations]
            symbol:PABPC1 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
            EMBL:AADN02025122 IPI:IPI00578358 Ensembl:ENSGALT00000023333
            Uniprot:F1NH81
        Length = 573

 Score = 158 (60.7 bits), Expect = 1.4e-10, P = 1.4e-10
 Identities = 36/80 (45%), Positives = 51/80 (63%)

Query:    39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
             N+F+  L K   ++ L DTFSAFG ++  K+V   E+G SKG+GFV + T EAA +AIE 
Sbjct:    36 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEK 93

Query:    99 MDGKFLDGWVIFVEYAKPRQ 118
             M+G  L+   +FV   K R+
Sbjct:    94 MNGMLLNDRKVFVGRFKSRK 113

 Score = 147 (56.8 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 32/85 (37%), Positives = 51/85 (60%)

Query:    33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
             +A+  TN+++    +   DE L++ F  FG  +  K++   ESG SKGFGFV +   E A
Sbjct:   122 RAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDA 180

Query:    93 GKAIEGMDGKFLDGWVIFVEYAKPR 117
              KA++ M+GK L+G  I+V  A+ +
Sbjct:   181 QKAVDEMNGKELNGKQIYVGRAQKK 205

 Score = 136 (52.9 bits), Expect = 3.3e-08, P = 3.3e-08
 Identities = 31/80 (38%), Positives = 47/80 (58%)

Query:    39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
             NL+V  L     DE LR  FS FG +  AK++   E G SKGFGFV +++ E A KA+  
Sbjct:   231 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTE 288

Query:    99 MDGKFLDGWVIFVEYAKPRQ 118
             M+G+ +    ++V  A+ ++
Sbjct:   289 MNGRIVATKPLYVALAQRKE 308


>MGI|MGI:107913 [details] [associations]
            symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
            protein-like 1" species:10090 "Mus musculus" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
            evidence=IDA] [GO:0006915 "apoptotic process" evidence=IEA]
            [GO:0007281 "germ cell development" evidence=IMP] [GO:0008284
            "positive regulation of cell proliferation" evidence=IMP]
            [GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017091
            "AU-rich element binding" evidence=IDA] [GO:0017145 "stem cell
            division" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:107913
            GO:GO:0005634 GO:GO:0006915 GO:GO:0000166 GO:GO:0008284
            Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
            eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
            HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 ChiTaRS:TIAL1
            EMBL:U55861 IPI:IPI00108085 PIR:S72436 RefSeq:NP_033409.1
            UniGene:Mm.242072 ProteinModelPortal:P70318 SMR:P70318
            IntAct:P70318 STRING:P70318 PhosphoSite:P70318 PaxDb:P70318
            PRIDE:P70318 Ensembl:ENSMUST00000106226 GeneID:21843 KEGG:mmu:21843
            InParanoid:P70318 OMA:NGSKQLR NextBio:301310 Bgee:P70318
            Genevestigator:P70318 GermOnline:ENSMUSG00000030846 Uniprot:P70318
        Length = 392

 Score = 155 (59.6 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 42/126 (33%), Positives = 63/126 (50%)

Query:     5 AAVAAPRGLRRLFSTSPFSSSLNPP-QRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGE 63
             AA+AA  G + L      + +  P  Q+       ++FV  LS   T E ++  F+ FG+
Sbjct:    80 AALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGK 139

Query:    64 VVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKPRQPPTLP 123
             +  A++VK   +G SKG+GFV +     A  AI  M G++L G  I   +A  R+PP   
Sbjct:   140 ISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWAT-RKPPAPK 198

Query:   124 SQNNTN 129
             S   TN
Sbjct:   199 STQETN 204

 Score = 120 (47.3 bits), Expect = 9.7e-07, P = 9.7e-07
 Identities = 30/103 (29%), Positives = 54/103 (52%)

Query:    33 QAEPST-NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEA 91
             Q+ P    ++  G++   TD+ +R TFS FG+++  ++    E GYS    FV+++T E+
Sbjct:   216 QSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFP--EKGYS----FVRFSTHES 269

Query:    92 AGKAIEGMDGKFLDGWVIFVEYAKPRQPPTLPSQNNTNFQYGR 134
             A  AI  ++G  ++G V+   + K     T   Q     Q+G+
Sbjct:   270 AAHAIVSVNGTTIEGHVVKCYWGKESPDMTKNFQQVDYSQWGQ 312


>RGD|1595845 [details] [associations]
            symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
            protein-like 1" species:10116 "Rattus norvegicus" [GO:0005634
            "nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
            [GO:0007281 "germ cell development" evidence=ISO] [GO:0008284
            "positive regulation of cell proliferation" evidence=ISO]
            [GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0017091
            "AU-rich element binding" evidence=ISO] [GO:0017145 "stem cell
            division" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1595845
            GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 EMBL:CH473956
            Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
            eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
            HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 IPI:IPI00555194
            EMBL:BC091409 RefSeq:NP_001013211.1 UniGene:Rn.162475 SMR:Q5BJN3
            STRING:Q5BJN3 GeneID:361655 KEGG:rno:361655 UCSC:RGD:1595845
            InParanoid:Q5BJN3 NextBio:677112 Genevestigator:Q5BJN3
            Uniprot:Q5BJN3
        Length = 392

 Score = 155 (59.6 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 42/126 (33%), Positives = 63/126 (50%)

Query:     5 AAVAAPRGLRRLFSTSPFSSSLNPP-QRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGE 63
             AA+AA  G + L      + +  P  Q+       ++FV  LS   T E ++  F+ FG+
Sbjct:    80 AALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGK 139

Query:    64 VVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKPRQPPTLP 123
             +  A++VK   +G SKG+GFV +     A  AI  M G++L G  I   +A  R+PP   
Sbjct:   140 ISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWAT-RKPPAPK 198

Query:   124 SQNNTN 129
             S   TN
Sbjct:   199 STQETN 204

 Score = 120 (47.3 bits), Expect = 9.7e-07, P = 9.7e-07
 Identities = 30/103 (29%), Positives = 54/103 (52%)

Query:    33 QAEPST-NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEA 91
             Q+ P    ++  G++   TD+ +R TFS FG+++  ++    E GYS    FV+++T E+
Sbjct:   216 QSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFP--EKGYS----FVRFSTHES 269

Query:    92 AGKAIEGMDGKFLDGWVIFVEYAKPRQPPTLPSQNNTNFQYGR 134
             A  AI  ++G  ++G V+   + K     T   Q     Q+G+
Sbjct:   270 AAHAIVSVNGTTIEGHVVKCYWGKESPDMTKNFQQVDYSQWGQ 312


>UNIPROTKB|P60826 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:10029 "Cricetulus griseus" [GO:0003730 "mRNA 3'-UTR
            binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
            [GO:0005737 "cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
            evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
            evidence=ISS] [GO:0017148 "negative regulation of translation"
            evidence=ISS] [GO:0030371 "translation repressor activity"
            evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
            [GO:0045727 "positive regulation of translation" evidence=ISS]
            [GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
            rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
            GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
            GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
            GO:GO:0070181 EMBL:AY359860 RefSeq:NP_001231002.1
            ProteinModelPortal:P60826 SMR:P60826 PRIDE:P60826 GeneID:100689075
            CTD:1153 Uniprot:P60826
        Length = 172

 Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 32/81 (39%), Positives = 47/81 (58%)

Query:    34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAG 93
             A     LFV GLS  T ++ L   FS +G++    +VK RE+  S+GFGFV +  ++ A 
Sbjct:     2 ASDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61

Query:    94 KAIEGMDGKFLDGWVIFVEYA 114
              A+  M+GK +DG  I V+ A
Sbjct:    62 DAMMAMNGKSVDGRQIRVDQA 82


>MGI|MGI:893588 [details] [associations]
            symbol:Cirbp "cold inducible RNA binding protein"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
            binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
            [GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006950 "response to
            stress" evidence=IEA] [GO:0009411 "response to UV" evidence=ISO]
            [GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017148
            "negative regulation of translation" evidence=IDA] [GO:0030371
            "translation repressor activity" evidence=IDA] [GO:0034063 "stress
            granule assembly" evidence=IDA] [GO:0045727 "positive regulation of
            translation" evidence=ISO] [GO:0048255 "mRNA stabilization"
            evidence=ISO] [GO:0070181 "SSU rRNA binding" evidence=ISO]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 MGI:MGI:893588 GO:GO:0005634 GO:GO:0009411
            GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
            Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
            GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
            GO:GO:0070181 KO:K13195 CTD:1153 HOGENOM:HOG000276232 OMA:ENRSRGY
            OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:D78135 EMBL:AK014655
            EMBL:AK132584 EMBL:BC075699 IPI:IPI00121073 RefSeq:NP_031731.1
            UniGene:Mm.17898 ProteinModelPortal:P60824 SMR:P60824 STRING:P60824
            PhosphoSite:P60824 PaxDb:P60824 PRIDE:P60824
            Ensembl:ENSMUST00000105365 GeneID:12696 KEGG:mmu:12696
            UCSC:uc007gce.1 GeneTree:ENSGT00700000104309 InParanoid:P60824
            NextBio:281950 Bgee:P60824 CleanEx:MM_CIRBP Genevestigator:P60824
            GermOnline:ENSMUSG00000045193 Uniprot:P60824
        Length = 172

 Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 32/81 (39%), Positives = 47/81 (58%)

Query:    34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAG 93
             A     LFV GLS  T ++ L   FS +G++    +VK RE+  S+GFGFV +  ++ A 
Sbjct:     2 ASDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61

Query:    94 KAIEGMDGKFLDGWVIFVEYA 114
              A+  M+GK +DG  I V+ A
Sbjct:    62 DAMMAMNGKSVDGRQIRVDQA 82


>RGD|620756 [details] [associations]
            symbol:Cirbp "cold inducible RNA binding protein" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=ISO;ISS] [GO:0005634
            "nucleus" evidence=ISO;ISS] [GO:0005654 "nucleoplasm" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=ISO;ISS] [GO:0009409 "response to
            cold" evidence=IEP] [GO:0009411 "response to UV" evidence=ISO;ISS]
            [GO:0010494 "cytoplasmic stress granule" evidence=ISO;ISS]
            [GO:0017148 "negative regulation of translation" evidence=ISO]
            [GO:0030371 "translation repressor activity" evidence=ISO;ISS]
            [GO:0034063 "stress granule assembly" evidence=ISO;ISS] [GO:0045727
            "positive regulation of translation" evidence=ISO;ISS] [GO:0048255
            "mRNA stabilization" evidence=ISO;ISS] [GO:0070181 "SSU rRNA
            binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620756 GO:GO:0005634
            GO:GO:0009411 GO:GO:0005654 GO:GO:0000166 GO:GO:0030371
            GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
            GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
            HOVERGEN:HBG107480 GO:GO:0070181 HOGENOM:HOG000276232
            OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309 EMBL:AB000362
            IPI:IPI00201031 UniGene:Rn.28931 ProteinModelPortal:P60825
            SMR:P60825 IntAct:P60825 STRING:P60825 PRIDE:P60825
            Ensembl:ENSRNOT00000021648 UCSC:RGD:620756 InParanoid:P60825
            Genevestigator:P60825 GermOnline:ENSRNOG00000015999 Uniprot:P60825
        Length = 172

 Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 32/81 (39%), Positives = 47/81 (58%)

Query:    34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAG 93
             A     LFV GLS  T ++ L   FS +G++    +VK RE+  S+GFGFV +  ++ A 
Sbjct:     2 ASDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61

Query:    94 KAIEGMDGKFLDGWVIFVEYA 114
              A+  M+GK +DG  I V+ A
Sbjct:    62 DAMMAMNGKSVDGRQIRVDQA 82


>CGD|CAL0005232 [details] [associations]
            symbol:orf19.6090 species:5476 "Candida albicans" [GO:0005634
            "nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
            [GO:0044011 "single-species biofilm formation on inanimate
            substrate" evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0003697 "single-stranded DNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 CGD:CAL0005232 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:AACQ01000036 EMBL:AACQ01000035 GO:GO:0044011
            eggNOG:COG0724 KO:K11294 RefSeq:XP_718946.1 RefSeq:XP_719050.1
            ProteinModelPortal:Q5AB84 STRING:Q5AB84 GeneID:3639341
            GeneID:3639464 KEGG:cal:CaO19.13509 KEGG:cal:CaO19.6090
            Uniprot:Q5AB84
        Length = 400

 Score = 155 (59.6 bits), Expect = 1.6e-10, P = 1.6e-10
 Identities = 28/101 (27%), Positives = 57/101 (56%)

Query:    33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
             Q+ PS  LF+  LS     + L + F  +G V+  ++  H ++   KGFG+V++++++ A
Sbjct:   265 QSPPSDTLFIGNLSFNANRDNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEA 324

Query:    93 GKAIEGMDGKFLDGWVIFVEYAKPRQPPTLPSQNNTNFQYG 133
               A+E M+G++++G    ++++ PR      + NN    +G
Sbjct:   325 KAALEAMNGEYIEGRPCRLDFSTPRDNTNNNNNNNRRGGFG 365

 Score = 154 (59.3 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 38/105 (36%), Positives = 57/105 (54%)

Query:    29 PQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYAT 88
             P     EP+T LFV  LS    D  L+  F   G V+ A+++  R +G S+G+G+V + +
Sbjct:   160 PAASTEEPAT-LFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFES 218

Query:    89 LEAAGKAIEGMDGKFLDGWVIFVEYAKPRQPPTLPSQNNTNFQYG 133
               AA KA+E M GK +DG  I ++ +  + P    S N+   QYG
Sbjct:   219 KSAAEKALEEMQGKEIDGRPINLDMSTGK-PHASKSNNDRAKQYG 262


>UNIPROTKB|Q5AB84 [details] [associations]
            symbol:NSR1 "Potential nuclear localization sequence
            binding protein Nsr1p" species:237561 "Candida albicans SC5314"
            [GO:0044011 "single-species biofilm formation on inanimate
            substrate" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 CGD:CAL0005232
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000036
            EMBL:AACQ01000035 GO:GO:0044011 eggNOG:COG0724 KO:K11294
            RefSeq:XP_718946.1 RefSeq:XP_719050.1 ProteinModelPortal:Q5AB84
            STRING:Q5AB84 GeneID:3639341 GeneID:3639464 KEGG:cal:CaO19.13509
            KEGG:cal:CaO19.6090 Uniprot:Q5AB84
        Length = 400

 Score = 155 (59.6 bits), Expect = 1.6e-10, P = 1.6e-10
 Identities = 28/101 (27%), Positives = 57/101 (56%)

Query:    33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
             Q+ PS  LF+  LS     + L + F  +G V+  ++  H ++   KGFG+V++++++ A
Sbjct:   265 QSPPSDTLFIGNLSFNANRDNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEA 324

Query:    93 GKAIEGMDGKFLDGWVIFVEYAKPRQPPTLPSQNNTNFQYG 133
               A+E M+G++++G    ++++ PR      + NN    +G
Sbjct:   325 KAALEAMNGEYIEGRPCRLDFSTPRDNTNNNNNNNRRGGFG 365

 Score = 154 (59.3 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 38/105 (36%), Positives = 57/105 (54%)

Query:    29 PQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYAT 88
             P     EP+T LFV  LS    D  L+  F   G V+ A+++  R +G S+G+G+V + +
Sbjct:   160 PAASTEEPAT-LFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFES 218

Query:    89 LEAAGKAIEGMDGKFLDGWVIFVEYAKPRQPPTLPSQNNTNFQYG 133
               AA KA+E M GK +DG  I ++ +  + P    S N+   QYG
Sbjct:   219 KSAAEKALEEMQGKEIDGRPINLDMSTGK-PHASKSNNDRAKQYG 262


>UNIPROTKB|F1NPM7 [details] [associations]
            symbol:TRA2A "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0000398 "mRNA splicing,
            via spliceosome" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 GO:GO:0000398 GeneTree:ENSGT00700000104309
            OMA:DRYEEYD EMBL:AADN02000941 EMBL:AADN02000942 IPI:IPI00590713
            Ensembl:ENSGALT00000017877 Uniprot:F1NPM7
        Length = 277

 Score = 151 (58.2 bits), Expect = 1.6e-10, P = 1.6e-10
 Identities = 40/111 (36%), Positives = 61/111 (54%)

Query:    14 RRLFSTSPFSSSL-NPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKH 72
             RR  S SP S+   +   R   +P+T L V GLS  TT+  LR+ FS +G +    +V  
Sbjct:    96 RRSRSHSPMSNRRRHTGSRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLTGVNVVYD 155

Query:    73 RESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYA--KPRQPPT 121
             + +G S+GF FV +  ++ + +A+E  +G  LDG  I V+Y+  K    PT
Sbjct:   156 QRTGRSRGFAFVYFERIDDSKEAMEHANGMELDGRRIRVDYSITKRAHTPT 206


>ZFIN|ZDB-GENE-030131-5836 [details] [associations]
            symbol:pabpc1l "poly(A) binding protein,
            cytoplasmic 1-like" species:7955 "Danio rerio" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-5836 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG002295 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 CTD:80336
            HSSP:P11940 EMBL:BC044513 IPI:IPI00863260 RefSeq:NP_956133.1
            UniGene:Dr.14309 ProteinModelPortal:Q803E7 SMR:Q803E7 PRIDE:Q803E7
            GeneID:327625 KEGG:dre:327625 NextBio:20810113 ArrayExpress:Q803E7
            Bgee:Q803E7 Uniprot:Q803E7
        Length = 620

 Score = 158 (60.7 bits), Expect = 1.6e-10, P = 1.6e-10
 Identities = 34/80 (42%), Positives = 52/80 (65%)

Query:    39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
             N+F+  + +   ++ L DTFSAFG ++  K+V   E+G SKG+GFV + T EAA +AIE 
Sbjct:   100 NIFIKNMDESIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAANRAIET 157

Query:    99 MDGKFLDGWVIFVEYAKPRQ 118
             M+G  L+   +FV + K R+
Sbjct:   158 MNGMLLNDRKVFVGHFKSRK 177

 Score = 136 (52.9 bits), Expect = 3.7e-08, P = 3.7e-08
 Identities = 29/89 (32%), Positives = 51/89 (57%)

Query:    30 QRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATL 89
             +R Q     NL+V  L     DE LR  F+ +G +  AK++   + G+S+GFGFV +++ 
Sbjct:   286 ERIQRYQGVNLYVKNLDDSIDDEKLRKEFAPYGTITSAKVMT--DGGHSRGFGFVCFSSP 343

Query:    90 EAAGKAIEGMDGKFLDGWVIFVEYAKPRQ 118
             E A KA+  M+G+ +    ++V  A+ ++
Sbjct:   344 EEATKAVTEMNGRIVSTKPLYVALAQRKE 372

 Score = 120 (47.3 bits), Expect = 8.7e-08, Sum P(2) = 8.7e-08
 Identities = 26/80 (32%), Positives = 46/80 (57%)

Query:    38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
             TN+++    +    E L++ F+ FG+ +   ++   E G S+GFGFV +     A +A+ 
Sbjct:   191 TNVYIKNFGEDIDSEKLKNIFTEFGKTLSVCVMTD-ERGRSRGFGFVNFVNHGDARRAVT 249

Query:    98 GMDGKFLDGWVIFVEYAKPR 117
              M+GK L+G V++V  A+ R
Sbjct:   250 EMNGKELNGRVLYVGRAQKR 269

 Score = 35 (17.4 bits), Expect = 8.7e-08, Sum P(2) = 8.7e-08
 Identities = 7/12 (58%), Positives = 8/12 (66%)

Query:   110 FVEYAKPRQPPT 121
             FV  A PR+P T
Sbjct:   446 FVRQAVPRRPST 457


>TAIR|locus:2122009 [details] [associations]
            symbol:RBP31 "AT4G24770" species:3702 "Arabidopsis
            thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA;TAS]
            [GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
            evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
            [GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
            [GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0045087 "innate
            immune response" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
            evidence=IDA] [GO:0009451 "RNA modification" evidence=IMP]
            [GO:0009073 "aromatic amino acid family biosynthetic process"
            evidence=RCA] [GO:0009965 "leaf morphogenesis" evidence=RCA]
            [GO:0016226 "iron-sulfur cluster assembly" evidence=RCA]
            [GO:0030154 "cell differentiation" evidence=RCA] [GO:0045036
            "protein targeting to chloroplast" evidence=RCA] [GO:0045893
            "positive regulation of transcription, DNA-dependent" evidence=RCA]
            [GO:0009631 "cold acclimation" evidence=IMP] [GO:0016553 "base
            conversion or substitution editing" evidence=IMP] [GO:0043489 "RNA
            stabilization" evidence=IMP] [GO:0006396 "RNA processing"
            evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0009570 EMBL:CP002687
            GenomeReviews:CT486007_GR GO:GO:0008266 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 GO:GO:0009631
            GO:GO:0016553 GO:GO:0006396 GO:GO:0030529 EMBL:AL035356
            EMBL:AL161562 GO:GO:0009535 eggNOG:COG0724 HOGENOM:HOG000276232
            EMBL:M94554 EMBL:X65255 EMBL:U08467 EMBL:D31712 EMBL:D31713
            IPI:IPI00523699 IPI:IPI00542634 IPI:IPI00760320 PIR:S28057
            PIR:S53492 RefSeq:NP_194208.1 UniGene:At.38112 UniGene:At.70990
            ProteinModelPortal:Q04836 SMR:Q04836 STRING:Q04836 PaxDb:Q04836
            PRIDE:Q04836 ProMEX:Q04836 EnsemblPlants:AT4G24770.1 GeneID:828579
            KEGG:ath:AT4G24770 GeneFarm:4009 TAIR:At4g24770 InParanoid:Q04836
            OMA:NRYDLNG PhylomeDB:Q04836 ProtClustDB:CLSN2915857
            Genevestigator:Q04836 GermOnline:AT4G24770 GO:GO:0043489
            Uniprot:Q04836
        Length = 329

 Score = 153 (58.9 bits), Expect = 1.6e-10, P = 1.6e-10
 Identities = 37/107 (34%), Positives = 60/107 (56%)

Query:    15 RLFSTSPFSSSLNPPQR-PQA-EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKH 72
             RL + +  +   + P+R P+  EP+  ++V  L     +  L   FS  G+VV A++V  
Sbjct:   219 RLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYD 278

Query:    73 RESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKPRQP 119
             RE+G S+GFGFV  + ++   +AI  +DG+ L+G  I V  A+ R P
Sbjct:   279 RETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEERPP 325

 Score = 117 (46.2 bits), Expect = 1.5e-06, P = 1.5e-06
 Identities = 29/94 (30%), Positives = 48/94 (51%)

Query:    32 PQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEA 91
             P+      LFV  L+     + L   F   G V  A+++ +RE+  S+GFGFV  ++++ 
Sbjct:   144 PEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDE 203

Query:    92 AGKAIEGMDGKFLDGWVIFVEYAKPR--QPPTLP 123
             A  A+E  +   L+G ++ V  A PR  +P   P
Sbjct:   204 AETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAP 237


>ZFIN|ZDB-GENE-030131-3238 [details] [associations]
            symbol:pabpc1a "poly A binding protein,
            cytoplasmic 1 a" species:7955 "Danio rerio" [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0007507 "heart development" evidence=IMP] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-3238 GO:GO:0007507
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
            HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 OrthoDB:EOG40ZQX5
            EMBL:BC099992 IPI:IPI00485280 RefSeq:NP_001026846.1
            UniGene:Dr.24504 ProteinModelPortal:Q499B6 SMR:Q499B6 STRING:Q499B6
            GeneID:606498 KEGG:dre:606498 CTD:606498 InParanoid:Q499B6
            NextBio:20892436 ArrayExpress:Q499B6 Uniprot:Q499B6
        Length = 634

 Score = 158 (60.7 bits), Expect = 1.7e-10, P = 1.7e-10
 Identities = 45/118 (38%), Positives = 61/118 (51%)

Query:    10 PRGLRRLFSTSPFSSSLNPPQR---PQAEPST------NLFVSGLSKRTTDETLRDTFSA 60
             P    R   T  F      P R    Q +PS       N+F+  L K   ++ L DTFSA
Sbjct:    62 PADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSA 121

Query:    61 FGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKPRQ 118
             FG ++  K+V   E+G SKG+GFV + T EAA +AIE M+G  L+   +FV   K R+
Sbjct:   122 FGNILSCKVVCD-ENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRK 177

 Score = 136 (52.9 bits), Expect = 3.9e-08, P = 3.9e-08
 Identities = 31/80 (38%), Positives = 47/80 (58%)

Query:    39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
             NL+V  L     DE LR  FS FG +  AK++   E G SKGFGFV +++ E A KA+  
Sbjct:   295 NLYVKNLDDGLDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTE 352

Query:    99 MDGKFLDGWVIFVEYAKPRQ 118
             M+G+ +    ++V  A+ ++
Sbjct:   353 MNGRIVATKPLYVALAQRKE 372

 Score = 130 (50.8 bits), Expect = 1.7e-07, P = 1.7e-07
 Identities = 26/85 (30%), Positives = 51/85 (60%)

Query:    33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
             +A+  TN+++    +   DE L++ F  +G  +  +++   +SG SKGFGFV +   E A
Sbjct:   186 RAKEFTNVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTD-DSGKSKGFGFVSFERHEDA 244

Query:    93 GKAIEGMDGKFLDGWVIFVEYAKPR 117
              +A++ M+GK ++G  ++V  A+ +
Sbjct:   245 QRAVDEMNGKEMNGKQVYVGRAQKK 269


>TAIR|locus:2044370 [details] [associations]
            symbol:AT2G46780 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 EMBL:BT022057
            IPI:IPI00944264 RefSeq:NP_182201.4 UniGene:At.22279
            ProteinModelPortal:Q501B0 SMR:Q501B0 PRIDE:Q501B0
            EnsemblPlants:AT2G46780.1 GeneID:819291 KEGG:ath:AT2G46780
            TAIR:At2g46780 OMA:FPYSTYG PhylomeDB:Q501B0 ProtClustDB:CLSN2722623
            Genevestigator:Q501B0 Uniprot:Q501B0
        Length = 336

 Score = 153 (58.9 bits), Expect = 1.7e-10, P = 1.7e-10
 Identities = 36/98 (36%), Positives = 54/98 (55%)

Query:    38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
             T +FV GL+  T  +T+R  F  FGE+V A ++  + +G SKG+GFV +   EAA +A +
Sbjct:    22 TKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQ 81

Query:    98 GM----DGKFLDGWVIFVEYAKPRQPPTLPSQNNTNFQ 131
              M    DG+  +  +  +   KPR PPT P      F+
Sbjct:    82 NMNPVIDGRRANCNLACLGAQKPR-PPTSPRHGTGRFR 118


>TAIR|locus:2179939 [details] [associations]
            symbol:AtRZ-1c "AtRZ-1c" species:3702 "Arabidopsis
            thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA;IDA] [GO:0003723
            "RNA binding" evidence=ISS] [GO:0008270 "zinc ion binding"
            evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005634
            "nucleus" evidence=IDA] [GO:0009409 "response to cold"
            evidence=IGI;IEP] [GO:0009414 "response to water deprivation"
            evidence=IEP] [GO:0009651 "response to salt stress" evidence=IEP]
            InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
            SMART:SM00343 SMART:SM00360 EMBL:CP002688 GO:GO:0005730
            GO:GO:0000166 GO:GO:0046872 GO:GO:0009409 GO:GO:0009414
            GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10
            SUPFAM:SSF57756 HOGENOM:HOG000276232 HSSP:Q14103 KO:K12885
            ProtClustDB:CLSN2718554 EMBL:AY092975 EMBL:AY114645 IPI:IPI00520891
            RefSeq:NP_196048.1 UniGene:At.33149 ProteinModelPortal:Q8RWN5
            SMR:Q8RWN5 IntAct:Q8RWN5 STRING:Q8RWN5 PRIDE:Q8RWN5
            EnsemblPlants:AT5G04280.1 GeneID:830307 KEGG:ath:AT5G04280
            TAIR:At5g04280 InParanoid:Q8RWN5 OMA:ESIREMH PhylomeDB:Q8RWN5
            ArrayExpress:Q8RWN5 Genevestigator:Q8RWN5 Uniprot:Q8RWN5
        Length = 310

 Score = 152 (58.6 bits), Expect = 1.8e-10, P = 1.8e-10
 Identities = 31/84 (36%), Positives = 49/84 (58%)

Query:    34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAG 93
             A+  + +FV GLS   TD  L   FS FG+++  +I+  R++G S+GFGF+ +A   A  
Sbjct:     3 AKEGSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMD 62

Query:    94 KAIEGMDGKFLDGWVIFVEYAKPR 117
             ++I  M G+     VI V  A+P+
Sbjct:    63 ESIREMHGRDFGDRVISVNRAEPK 86


>RGD|1310724 [details] [associations]
            symbol:Snrnp35 "small nuclear ribonucleoprotein 35 (U11/U12)"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=ISO] [GO:0005681 "spliceosomal complex" evidence=IEA]
            [GO:0005689 "U12-type spliceosomal complex" evidence=IEA;ISO]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
            splicing" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310724
            GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0003723 HSSP:Q9V535 eggNOG:COG0724 GO:GO:0005689 CTD:11066
            HOGENOM:HOG000006374 HOVERGEN:HBG104583 KO:K13155 OrthoDB:EOG4MSD0C
            EMBL:BC086435 IPI:IPI00189830 RefSeq:NP_001014149.1
            UniGene:Rn.79076 ProteinModelPortal:Q5U1W5 STRING:Q5U1W5
            GeneID:360803 KEGG:rno:360803 UCSC:RGD:1310724 InParanoid:Q5U1W5
            NextBio:674154 Genevestigator:Q5U1W5 Uniprot:Q5U1W5
        Length = 244

 Score = 148 (57.2 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 30/90 (33%), Positives = 51/90 (56%)

Query:    28 PPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYA 87
             P +    +P   LFV+ L+ +T +E L++ FS +G++   ++V+   +G+SKG+ F++Y 
Sbjct:    41 PNKGVTGDPLLTLFVARLNSQTKEEKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYK 100

Query:    88 TLEAAGKAIEGMDGKFLDGWVIFVEYAKPR 117
                A  KA    DG  +D   IFV+Y   R
Sbjct:   101 EERALLKAYRDADGLVIDQHEIFVDYELER 130


>UNIPROTKB|Q5U1W5 [details] [associations]
            symbol:Snrnp35 "U11/U12 small nuclear ribonucleoprotein 35
            kDa protein" species:10116 "Rattus norvegicus" [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:1310724 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q9V535 eggNOG:COG0724
            GO:GO:0005689 CTD:11066 HOGENOM:HOG000006374 HOVERGEN:HBG104583
            KO:K13155 OrthoDB:EOG4MSD0C EMBL:BC086435 IPI:IPI00189830
            RefSeq:NP_001014149.1 UniGene:Rn.79076 ProteinModelPortal:Q5U1W5
            STRING:Q5U1W5 GeneID:360803 KEGG:rno:360803 UCSC:RGD:1310724
            InParanoid:Q5U1W5 NextBio:674154 Genevestigator:Q5U1W5
            Uniprot:Q5U1W5
        Length = 244

 Score = 148 (57.2 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 30/90 (33%), Positives = 51/90 (56%)

Query:    28 PPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYA 87
             P +    +P   LFV+ L+ +T +E L++ FS +G++   ++V+   +G+SKG+ F++Y 
Sbjct:    41 PNKGVTGDPLLTLFVARLNSQTKEEKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYK 100

Query:    88 TLEAAGKAIEGMDGKFLDGWVIFVEYAKPR 117
                A  KA    DG  +D   IFV+Y   R
Sbjct:   101 EERALLKAYRDADGLVIDQHEIFVDYELER 130


>UNIPROTKB|Q6IP09 [details] [associations]
            symbol:pabpc1-b "Polyadenylate-binding protein 1-B"
            species:8355 "Xenopus laevis" [GO:0005844 "polysome" evidence=ISS]
            [GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
            "eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043621
            "protein self-association" evidence=ISS] [GO:0048255 "mRNA
            stabilization" evidence=ISS] [GO:0060212 "negative regulation of
            nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
            GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0005844
            GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            GO:GO:0031370 EMBL:BC072110 EMBL:BC108462 RefSeq:NP_001085069.1
            UniGene:Xl.60751 ProteinModelPortal:Q6IP09 SMR:Q6IP09 PRIDE:Q6IP09
            GeneID:432140 KEGG:xla:432140 CTD:432140 Xenbase:XB-GENE-6255999
            Uniprot:Q6IP09
        Length = 633

 Score = 157 (60.3 bits), Expect = 2.1e-10, P = 2.1e-10
 Identities = 44/118 (37%), Positives = 61/118 (51%)

Query:    10 PRGLRRLFSTSPFSSSLNPPQR---PQAEPST------NLFVSGLSKRTTDETLRDTFSA 60
             P    R   T  F      P R    Q +PS       N+F+  L K   ++ L DTFSA
Sbjct:    62 PADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSA 121

Query:    61 FGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKPRQ 118
             FG ++  K+V   E+G SKG+GFV + T EAA +AI+ M+G  L+   +FV   K R+
Sbjct:   122 FGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRK 177

 Score = 138 (53.6 bits), Expect = 2.3e-08, P = 2.3e-08
 Identities = 29/85 (34%), Positives = 50/85 (58%)

Query:    33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
             +A+  TN+++    +   DE L++ F  +G  +  K++   + G S+GFGFV +   E A
Sbjct:   186 RAKEFTNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTD-DHGKSRGFGFVSFERHEDA 244

Query:    93 GKAIEGMDGKFLDGWVIFVEYAKPR 117
              KA++ M+GK L+G  IFV  A+ +
Sbjct:   245 QKAVDDMNGKDLNGKAIFVGRAQKK 269

 Score = 134 (52.2 bits), Expect = 6.3e-08, P = 6.3e-08
 Identities = 30/80 (37%), Positives = 47/80 (58%)

Query:    39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
             NL+V  L     DE LR  F+ FG +  AK++   E G SKGFGFV +++ E A KA+  
Sbjct:   295 NLYVKNLDDGIDDERLRKEFTPFGSITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTE 352

Query:    99 MDGKFLDGWVIFVEYAKPRQ 118
             M+G+ +    ++V  A+ ++
Sbjct:   353 MNGRIVATKPLYVALAQRKE 372


>SGD|S000003391 [details] [associations]
            symbol:NSR1 "Nucleolar protein that binds nuclear
            localization sequences" species:4932 "Saccharomyces cerevisiae"
            [GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0003677 "DNA
            binding" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
            evidence=IDA] [GO:0006364 "rRNA processing" evidence=IEA;TAS]
            [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005739 "mitochondrion"
            evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0006950 "response to stress"
            evidence=IEA] [GO:0000028 "ribosomal small subunit assembly"
            evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 SGD:S000003391 GO:GO:0005739
            GO:GO:0005730 GO:GO:0006950 EMBL:BK006941 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697 GO:GO:0000028
            GO:GO:0006364 eggNOG:COG0724 EMBL:X85807 KO:K11294 OMA:VITDRES
            OrthoDB:EOG422DTZ GeneTree:ENSGT00550000074656 EMBL:X57185
            EMBL:Z72944 EMBL:Z72946 PIR:A39205 RefSeq:NP_011675.1
            ProteinModelPortal:P27476 SMR:P27476 DIP:DIP-5537N IntAct:P27476
            MINT:MINT-543806 STRING:P27476 PaxDb:P27476 PeptideAtlas:P27476
            EnsemblFungi:YGR159C GeneID:853064 KEGG:sce:YGR159C CYGD:YGR159c
            HOGENOM:HOG000113864 NextBio:973004 Genevestigator:P27476
            GermOnline:YGR159C Uniprot:P27476
        Length = 414

 Score = 154 (59.3 bits), Expect = 2.2e-10, P = 2.2e-10
 Identities = 28/84 (33%), Positives = 52/84 (61%)

Query:    34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAG 93
             +EPS  LF+  LS     + + + F+  GEVV  +I  H E+   KGFG+V+++ +E A 
Sbjct:   263 SEPSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAK 322

Query:    94 KAIEGMDGKFLDGWVIFVEYAKPR 117
             KA++ + G+++D   + ++++ PR
Sbjct:   323 KALDALQGEYIDNRPVRLDFSSPR 346

 Score = 127 (49.8 bits), Expect = 1.9e-07, P = 1.9e-07
 Identities = 30/84 (35%), Positives = 45/84 (53%)

Query:    23 SSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFG 82
             SS+         EP+T +FV  LS    DE L+  F   G V+ A+++  R +  S+G+G
Sbjct:   154 SSNKKQKNEETEEPAT-IFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYG 212

Query:    83 FVKYATLEAAGKAIEGMDGKFLDG 106
             +V +     A KAI+ M GK +DG
Sbjct:   213 YVDFENKSYAEKAIQEMQGKEIDG 236


>UNIPROTKB|B4E2X2 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AC004221 HOVERGEN:HBG107480 EMBL:AC004258 UniGene:Hs.618145
            UniGene:Hs.634522 HGNC:HGNC:1982 HOGENOM:HOG000276232
            OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:AK304470 IPI:IPI00909097
            SMR:B4E2X2 STRING:B4E2X2 Ensembl:ENST00000413636 UCSC:uc010xgl.1
            Uniprot:B4E2X2
        Length = 263

 Score = 149 (57.5 bits), Expect = 2.2e-10, P = 2.2e-10
 Identities = 32/81 (39%), Positives = 48/81 (59%)

Query:    34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAG 93
             A     LFV GLS  T +++L   FS +G++    +VK RE+  S+GFGFV +  ++ A 
Sbjct:     2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61

Query:    94 KAIEGMDGKFLDGWVIFVEYA 114
              A+  M+GK +DG  I V+ A
Sbjct:    62 DAMMAMNGKSVDGRQIRVDQA 82


>WB|WBGene00003902 [details] [associations]
            symbol:pab-1 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0040010 "positive regulation of growth
            rate" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
            [GO:0009792 "embryo development ending in birth or egg hatching"
            evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
            evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
            [GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
            [GO:0007276 "gamete generation" evidence=IMP] [GO:0006898
            "receptor-mediated endocytosis" evidence=IMP] [GO:0040007 "growth"
            evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0043186
            "P granule" evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing
            body" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0009792
            GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
            GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0010171
            GO:GO:0040035 GO:GO:0000932 GO:GO:0007276 GO:GO:0043186 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            EMBL:AL032631 HSSP:P11940 GeneTree:ENSGT00640000091232
            GeneID:172920 KEGG:cel:CELE_Y106G6H.2 UCSC:Y106G6H.2b CTD:172920
            NextBio:877531 PIR:T26427 RefSeq:NP_001021709.1
            ProteinModelPortal:Q9U302 SMR:Q9U302 DIP:DIP-26308N IntAct:Q9U302
            MINT:MINT-226577 STRING:Q9U302 PRIDE:Q9U302
            EnsemblMetazoa:Y106G6H.2a.1 EnsemblMetazoa:Y106G6H.2a.2
            EnsemblMetazoa:Y106G6H.2a.3 EnsemblMetazoa:Y106G6H.2a.4
            EnsemblMetazoa:Y106G6H.2a.5 EnsemblMetazoa:Y106G6H.2a.6
            WormBase:Y106G6H.2a InParanoid:Q9U302 OMA:CKVAMDE
            ArrayExpress:Q9U302 Uniprot:Q9U302
        Length = 646

 Score = 157 (60.3 bits), Expect = 2.2e-10, P = 2.2e-10
 Identities = 40/117 (34%), Positives = 60/117 (51%)

Query:    10 PRGLRRLFSTSPFSSSLNPPQR---PQAEPST------NLFVSGLSKRTTDETLRDTFSA 60
             P    R   T  F +    P R    Q +P+       N+F+  L K   ++++ DTFS 
Sbjct:    83 PADAERAMDTMNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSL 142

Query:    61 FGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKPR 117
             FG ++  K+    E G+SKG+GFV + T EAA  AI+ ++G  L G  +FV   +PR
Sbjct:   143 FGNILSCKVAID-EDGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPR 198

 Score = 126 (49.4 bits), Expect = 4.7e-07, P = 4.7e-07
 Identities = 28/89 (31%), Positives = 48/89 (53%)

Query:    30 QRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATL 89
             +R Q     NL+V  L +   D+ L+  F ++G +  AK++   E+G SKGFGFV +   
Sbjct:   309 ERMQKYQGVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTD-ENGRSKGFGFVCFEKP 367

Query:    90 EAAGKAIEGMDGKFLDGWVIFVEYAKPRQ 118
             E A  A+  M+ K +    ++V  A+ ++
Sbjct:   368 EEATSAVTEMNSKMVCSKPLYVAIAQRKE 396

 Score = 106 (42.4 bits), Expect = 6.5e-05, P = 6.5e-05
 Identities = 23/73 (31%), Positives = 37/73 (50%)

Query:    34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAG 93
             A+  TN++V         ETL   F+ FG +   +++     G SKGFGFV +A  E A 
Sbjct:   209 AKQFTNVYVKNFGDHYNKETLEKLFAKFGNITSCEVMT--VEGKSKGFGFVAFANPEEAE 266

Query:    94 KAIEGMDGKFLDG 106
              A++ +    ++G
Sbjct:   267 TAVQALHDSTIEG 279


>UNIPROTKB|Q01085 [details] [associations]
            symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006915
            "apoptotic process" evidence=IEA] [GO:0007281 "germ cell
            development" evidence=IEA] [GO:0008284 "positive regulation of cell
            proliferation" evidence=IEA] [GO:0017091 "AU-rich element binding"
            evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634 "nucleus"
            evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
            evidence=ISS] [GO:0003723 "RNA binding" evidence=TAS] [GO:0006952
            "defense response" evidence=TAS] [GO:0005764 "lysosome"
            evidence=TAS] [GO:0006357 "regulation of transcription from RNA
            polymerase II promoter" evidence=TAS] [GO:0006917 "induction of
            apoptosis" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0006915 GO:GO:0006952 GO:GO:0006917 GO:GO:0000166
            GO:GO:0008284 Gene3D:3.30.70.330 GO:GO:0006357 GO:GO:0005764
            GO:GO:0003723 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
            eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
            HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:M96954 EMBL:AK290695
            EMBL:AK290984 IPI:IPI00005615 IPI:IPI00644708 PIR:A46174
            RefSeq:NP_001029097.1 RefSeq:NP_003243.1 UniGene:Hs.501203 PDB:1X4G
            PDB:2CQI PDB:2DH7 PDBsum:1X4G PDBsum:2CQI PDBsum:2DH7
            ProteinModelPortal:Q01085 SMR:Q01085 DIP:DIP-42425N IntAct:Q01085
            MINT:MINT-1203913 STRING:Q01085 PhosphoSite:Q01085 DMDM:267131
            PaxDb:Q01085 PRIDE:Q01085 Ensembl:ENST00000369093
            Ensembl:ENST00000436547 GeneID:7073 KEGG:hsa:7073 UCSC:uc001lei.1
            CTD:7073 GeneCards:GC10M121324 HGNC:HGNC:11804 MIM:603413
            neXtProt:NX_Q01085 PharmGKB:PA36513 OMA:EEVYNQS PhylomeDB:Q01085
            ChiTaRS:TIAL1 EvolutionaryTrace:Q01085 GenomeRNAi:7073
            NextBio:27661 ArrayExpress:Q01085 Bgee:Q01085 CleanEx:HS_TIAL1
            Genevestigator:Q01085 GermOnline:ENSG00000151923 Uniprot:Q01085
        Length = 375

 Score = 153 (58.9 bits), Expect = 2.3e-10, P = 2.3e-10
 Identities = 41/126 (32%), Positives = 63/126 (50%)

Query:     5 AAVAAPRGLRRLFSTSPFSSSLNPP-QRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGE 63
             AA+AA  G + L      + +  P  Q+       ++FV  LS   T E ++  F+ FG+
Sbjct:    63 AALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGK 122

Query:    64 VVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKPRQP-PTL 122
             +  A++VK   +G SKG+GFV +     A  AI  M G++L G  I   +A  + P P  
Sbjct:   123 ISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKS 182

Query:   123 PSQNNT 128
               +NNT
Sbjct:   183 TQENNT 188

 Score = 120 (47.3 bits), Expect = 9.0e-07, P = 9.0e-07
 Identities = 30/103 (29%), Positives = 54/103 (52%)

Query:    33 QAEPST-NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEA 91
             Q+ P    ++  G++   TD+ +R TFS FG+++  ++    E GYS    FV+++T E+
Sbjct:   199 QSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFP--EKGYS----FVRFSTHES 252

Query:    92 AGKAIEGMDGKFLDGWVIFVEYAKPRQPPTLPSQNNTNFQYGR 134
             A  AI  ++G  ++G V+   + K     T   Q     Q+G+
Sbjct:   253 AAHAIVSVNGTTIEGHVVKCYWGKESPDMTKNFQQVDYSQWGQ 295


>UNIPROTKB|F2Z4H8 [details] [associations]
            symbol:TIAL1 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0017145 "stem cell division" evidence=IEA] [GO:0017091
            "AU-rich element binding" evidence=IEA] [GO:0010494 "cytoplasmic
            stress granule" evidence=IEA] [GO:0008284 "positive regulation of
            cell proliferation" evidence=IEA] [GO:0007281 "germ cell
            development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
            GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
            GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:NGSKQLR
            EMBL:DAAA02059399 IPI:IPI00707976 RefSeq:NP_001179985.1
            UniGene:Bt.15754 ProteinModelPortal:F2Z4H8
            Ensembl:ENSBTAT00000005331 GeneID:614540 KEGG:bta:614540
            NextBio:20899153 Uniprot:F2Z4H8
        Length = 380

 Score = 153 (58.9 bits), Expect = 2.3e-10, P = 2.3e-10
 Identities = 41/126 (32%), Positives = 63/126 (50%)

Query:     5 AAVAAPRGLRRLFSTSPFSSSLNPP-QRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGE 63
             AA+AA  G + L      + +  P  Q+       ++FV  LS   T E ++  F+ FG+
Sbjct:    63 AALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGK 122

Query:    64 VVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKPRQP-PTL 122
             +  A++VK   +G SKG+GFV +     A  AI  M G++L G  I   +A  + P P  
Sbjct:   123 ISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKS 182

Query:   123 PSQNNT 128
               +NNT
Sbjct:   183 TQENNT 188

 Score = 116 (45.9 bits), Expect = 2.5e-06, P = 2.5e-06
 Identities = 26/84 (30%), Positives = 48/84 (57%)

Query:    33 QAEPST-NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEA 91
             Q+ P    ++  G++   TD+ +R TFS FG+++  ++    E GYS    FV+++T E+
Sbjct:   199 QSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFP--EKGYS----FVRFSTHES 252

Query:    92 AGKAIEGMDGKFLDGWVIFVEYAK 115
             A  AI  ++G  ++G V+   + K
Sbjct:   253 AAHAIVSVNGTTIEGHVVKCYWGK 276


>UNIPROTKB|F1NY49 [details] [associations]
            symbol:374274 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
            development" evidence=IEA] [GO:0008284 "positive regulation of cell
            proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
            granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
            evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
            Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
            GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
            IPI:IPI00575679 Ensembl:ENSGALT00000015349 ArrayExpress:F1NY49
            Uniprot:F1NY49
        Length = 388

 Score = 153 (58.9 bits), Expect = 2.4e-10, P = 2.4e-10
 Identities = 41/126 (32%), Positives = 63/126 (50%)

Query:     5 AAVAAPRGLRRLFSTSPFSSSLNPP-QRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGE 63
             AA+AA  G + L      + +  P  Q+       ++FV  LS   T E ++  F+ FG+
Sbjct:    79 AALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGK 138

Query:    64 VVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKPRQP-PTL 122
             +  A++VK   +G SKG+GFV +     A  AI  M G++L G  I   +A  + P P  
Sbjct:   139 ISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKS 198

Query:   123 PSQNNT 128
               +NNT
Sbjct:   199 TQENNT 204

 Score = 120 (47.3 bits), Expect = 9.6e-07, P = 9.6e-07
 Identities = 30/103 (29%), Positives = 54/103 (52%)

Query:    33 QAEPST-NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEA 91
             Q+ P    ++  G++   TD+ +R TFS FG+++  ++    E GYS    FV+++T E+
Sbjct:   215 QSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFP--EKGYS----FVRFSTHES 268

Query:    92 AGKAIEGMDGKFLDGWVIFVEYAKPRQPPTLPSQNNTNFQYGR 134
             A  AI  ++G  ++G V+   + K     T   Q     Q+G+
Sbjct:   269 AAHAIVSVNGTTIEGHVVKCYWGKESPDMTKNFQQVDYSQWGQ 311


>UNIPROTKB|F1NS94 [details] [associations]
            symbol:374274 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
            development" evidence=IEA] [GO:0008284 "positive regulation of cell
            proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
            granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
            evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
            Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
            GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
            IPI:IPI00681845 Ensembl:ENSGALT00000029737 ArrayExpress:F1NS94
            Uniprot:F1NS94
        Length = 389

 Score = 153 (58.9 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 41/126 (32%), Positives = 63/126 (50%)

Query:     5 AAVAAPRGLRRLFSTSPFSSSLNPP-QRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGE 63
             AA+AA  G + L      + +  P  Q+       ++FV  LS   T E ++  F+ FG+
Sbjct:    80 AALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGK 139

Query:    64 VVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKPRQP-PTL 122
             +  A++VK   +G SKG+GFV +     A  AI  M G++L G  I   +A  + P P  
Sbjct:   140 ISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKS 199

Query:   123 PSQNNT 128
               +NNT
Sbjct:   200 TQENNT 205

 Score = 120 (47.3 bits), Expect = 9.6e-07, P = 9.6e-07
 Identities = 30/103 (29%), Positives = 54/103 (52%)

Query:    33 QAEPST-NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEA 91
             Q+ P    ++  G++   TD+ +R TFS FG+++  ++    E GYS    FV+++T E+
Sbjct:   216 QSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFP--EKGYS----FVRFSTHES 269

Query:    92 AGKAIEGMDGKFLDGWVIFVEYAKPRQPPTLPSQNNTNFQYGR 134
             A  AI  ++G  ++G V+   + K     T   Q     Q+G+
Sbjct:   270 AAHAIVSVNGTTIEGHVVKCYWGKESPDMTKNFQQVDYSQWGQ 312


>UNIPROTKB|E2R228 [details] [associations]
            symbol:E2R228 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 EMBL:AAEX03026350
            Ensembl:ENSCAFT00000025375 OMA:SDVEYRC Uniprot:E2R228
        Length = 149

 Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 31/75 (41%), Positives = 46/75 (61%)

Query:    40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
             LF+ GL+  T ++ L D FS+FG +    +VK RE+  S+GF F+ +   E A  A+  M
Sbjct:     8 LFLGGLNFNTNEQALEDHFSSFGPISEVVVVKDRETQRSRGFCFITFTNPEHASDAMRPM 67

Query:   100 DGKFLDGWVIFVEYA 114
             +GK LDG  I V++A
Sbjct:    68 NGKSLDGRQIRVDHA 82


>UNIPROTKB|Q74DJ2 [details] [associations]
            symbol:GSU1324 "RNA-binding protein" species:243231
            "Geobacter sulfurreducens PCA" [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR HSSP:P19339
            HOGENOM:HOG000276232 RefSeq:NP_952377.1 ProteinModelPortal:Q74DJ2
            GeneID:2685944 KEGG:gsu:GSU1324 PATRIC:22025425 OMA:HMSYEAT
            ProtClustDB:CLSK828302 BioCyc:GSUL243231:GH27-1311-MONOMER
            Uniprot:Q74DJ2
        Length = 107

 Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 34/85 (40%), Positives = 48/85 (56%)

Query:    40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
             L+V  +S   T++ LR  FS  G V    I+   E+G SKG G+V+  T E A +AIE +
Sbjct:     5 LYVGHMSYEATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAIETL 64

Query:   100 DGKFLDGWVIFVEYAKPRQPPTLPS 124
             DG  L   VI V  A+P++  T P+
Sbjct:    65 DGALLRNRVITVSVARPQKQATRPA 89


>TIGR_CMR|GSU_1324 [details] [associations]
            symbol:GSU_1324 "RNA-binding protein" species:243231
            "Geobacter sulfurreducens PCA" [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AE017180 GenomeReviews:AE017180_GR HSSP:P19339
            HOGENOM:HOG000276232 RefSeq:NP_952377.1 ProteinModelPortal:Q74DJ2
            GeneID:2685944 KEGG:gsu:GSU1324 PATRIC:22025425 OMA:HMSYEAT
            ProtClustDB:CLSK828302 BioCyc:GSUL243231:GH27-1311-MONOMER
            Uniprot:Q74DJ2
        Length = 107

 Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 34/85 (40%), Positives = 48/85 (56%)

Query:    40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
             L+V  +S   T++ LR  FS  G V    I+   E+G SKG G+V+  T E A +AIE +
Sbjct:     5 LYVGHMSYEATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAIETL 64

Query:   100 DGKFLDGWVIFVEYAKPRQPPTLPS 124
             DG  L   VI V  A+P++  T P+
Sbjct:    65 DGALLRNRVITVSVARPQKQATRPA 89


>ZFIN|ZDB-GENE-030131-2420 [details] [associations]
            symbol:srsf2b "serine/arginine-rich splicing
            factor 2b" species:7955 "Danio rerio" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-2420
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339
            HOVERGEN:HBG107480 eggNOG:NOG254270 GeneTree:ENSGT00700000104403
            HOGENOM:HOG000276233 OrthoDB:EOG4D26RH EMBL:CU463857 EMBL:BC065971
            IPI:IPI00484778 UniGene:Dr.77943 SMR:Q6NZT9 STRING:Q6NZT9
            Ensembl:ENSDART00000017706 Ensembl:ENSDART00000105586
            InParanoid:Q6NZT9 OMA:YVEMESA Uniprot:Q6NZT9
        Length = 220

 Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 35/93 (37%), Positives = 51/93 (54%)

Query:    28 PPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYA 87
             PP  P  +  T+L V  L+ RT+ ETLR  F  +G V    I + R +  S+GF FV++ 
Sbjct:     6 PP--PDVDGMTSLKVDNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFH 63

Query:    88 TLEAAGKAIEGMDGKFLDGWVIFVEYAKPRQPP 120
                 A  A++ MDG  LDG  + V+ A+  +PP
Sbjct:    64 DKRDAEDAMDAMDGAILDGRELRVQMARYGRPP 96


>UNIPROTKB|E2RA41 [details] [associations]
            symbol:TIAL1 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0017145 "stem cell division" evidence=IEA]
            [GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
            "cytoplasmic stress granule" evidence=IEA] [GO:0008284 "positive
            regulation of cell proliferation" evidence=IEA] [GO:0007281 "germ
            cell development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
            GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
            GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
            EMBL:AAEX03015584 EMBL:AAEX03015585 RefSeq:XP_852319.1
            ProteinModelPortal:E2RA41 SMR:E2RA41 Ensembl:ENSCAFT00000019370
            GeneID:477841 KEGG:cfa:477841 NextBio:20853261 Uniprot:E2RA41
        Length = 392

 Score = 153 (58.9 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 41/126 (32%), Positives = 63/126 (50%)

Query:     5 AAVAAPRGLRRLFSTSPFSSSLNPP-QRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGE 63
             AA+AA  G + L      + +  P  Q+       ++FV  LS   T E ++  F+ FG+
Sbjct:    80 AALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGK 139

Query:    64 VVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKPRQP-PTL 122
             +  A++VK   +G SKG+GFV +     A  AI  M G++L G  I   +A  + P P  
Sbjct:   140 ISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKS 199

Query:   123 PSQNNT 128
               +NNT
Sbjct:   200 TQENNT 205

 Score = 120 (47.3 bits), Expect = 9.7e-07, P = 9.7e-07
 Identities = 30/103 (29%), Positives = 54/103 (52%)

Query:    33 QAEPST-NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEA 91
             Q+ P    ++  G++   TD+ +R TFS FG+++  ++    E GYS    FV+++T E+
Sbjct:   216 QSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFP--EKGYS----FVRFSTHES 269

Query:    92 AGKAIEGMDGKFLDGWVIFVEYAKPRQPPTLPSQNNTNFQYGR 134
             A  AI  ++G  ++G V+   + K     T   Q     Q+G+
Sbjct:   270 AAHAIVSVNGTTIEGHVVKCYWGKESPDMTKNFQQVDYSQWGQ 312


>UNIPROTKB|F2Z5F9 [details] [associations]
            symbol:LOC100736782 "Uncharacterized protein" species:9823
            "Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
            EMBL:CT826370 EMBL:CT867965 RefSeq:XP_003133244.1 UniGene:Ssc.56271
            ProteinModelPortal:F2Z5F9 SMR:F2Z5F9 Ensembl:ENSSSCT00000011686
            GeneID:100158186 KEGG:ssc:100158186 Uniprot:F2Z5F9
        Length = 392

 Score = 153 (58.9 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 41/126 (32%), Positives = 63/126 (50%)

Query:     5 AAVAAPRGLRRLFSTSPFSSSLNPP-QRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGE 63
             AA+AA  G + L      + +  P  Q+       ++FV  LS   T E ++  F+ FG+
Sbjct:    80 AALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGK 139

Query:    64 VVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKPRQP-PTL 122
             +  A++VK   +G SKG+GFV +     A  AI  M G++L G  I   +A  + P P  
Sbjct:   140 ISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKS 199

Query:   123 PSQNNT 128
               +NNT
Sbjct:   200 TQENNT 205

 Score = 120 (47.3 bits), Expect = 9.7e-07, P = 9.7e-07
 Identities = 30/103 (29%), Positives = 54/103 (52%)

Query:    33 QAEPST-NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEA 91
             Q+ P    ++  G++   TD+ +R TFS FG+++  ++    E GYS    FV+++T E+
Sbjct:   216 QSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFP--EKGYS----FVRFSTHES 269

Query:    92 AGKAIEGMDGKFLDGWVIFVEYAKPRQPPTLPSQNNTNFQYGR 134
             A  AI  ++G  ++G V+   + K     T   Q     Q+G+
Sbjct:   270 AAHAIVSVNGTTIEGHVVKCYWGKESPDMTKNFQQVDYSQWGQ 312


>ASPGD|ASPL0000000406 [details] [associations]
            symbol:AN6501 species:162425 "Emericella nidulans"
            [GO:0008150 "biological_process" evidence=ND] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BN001301 EMBL:AACD01000109
            eggNOG:COG0724 HOGENOM:HOG000200535 KO:K12831 OrthoDB:EOG4Q886Z
            RefSeq:XP_664105.1 ProteinModelPortal:Q5AYX9 SMR:Q5AYX9
            STRING:Q5AYX9 EnsemblFungi:CADANIAT00007269 GeneID:2870231
            KEGG:ani:AN6501.2 OMA:GDQAERM Uniprot:Q5AYX9
        Length = 352

 Score = 152 (58.6 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 34/100 (34%), Positives = 53/100 (53%)

Query:    15 RLFSTSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRE 74
             RL+      +  +  ++   E    LFV  L    T++ L DTFS FG +V+   V   +
Sbjct:    78 RLYGKPIRVNKASADKQKSVEIGAELFVGNLDPMVTEQVLYDTFSRFGNLVNLPKVARDD 137

Query:    75 SGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYA 114
             S  SKG+GFV +A  E++  AI  M+G++L    + V+YA
Sbjct:   138 SNLSKGYGFVSFADFESSDAAIANMNGQYLMNKQVSVQYA 177


>MGI|MGI:1923417 [details] [associations]
            symbol:Snrnp35 "small nuclear ribonucleoprotein 35
            (U11/U12)" species:10090 "Mus musculus" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003674 "molecular_function"
            evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=ISS] [GO:0005681 "spliceosomal complex" evidence=IEA]
            [GO:0005689 "U12-type spliceosomal complex" evidence=ISO]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0008150
            "biological_process" evidence=ND] [GO:0008380 "RNA splicing"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 MGI:MGI:1923417 GO:GO:0008380
            GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
            eggNOG:COG0724 GO:GO:0005689 HSSP:Q14103
            GeneTree:ENSGT00530000063750 CTD:11066 HOGENOM:HOG000006374
            HOVERGEN:HBG104583 KO:K13155 OMA:QHEVFVD OrthoDB:EOG4MSD0C
            ChiTaRS:SNRNP35 EMBL:AK018232 EMBL:AK039064 EMBL:BC043031
            EMBL:BC058361 IPI:IPI00135531 RefSeq:NP_083808.1 UniGene:Mm.156035
            ProteinModelPortal:Q9D384 SMR:Q9D384 STRING:Q9D384
            PhosphoSite:Q9D384 PRIDE:Q9D384 Ensembl:ENSMUST00000031349
            Ensembl:ENSMUST00000111453 GeneID:76167 KEGG:mmu:76167
            UCSC:uc008zpy.1 InParanoid:Q9D384 NextBio:344705 Bgee:Q9D384
            Genevestigator:Q9D384 Uniprot:Q9D384
        Length = 244

 Score = 147 (56.8 bits), Expect = 2.6e-10, P = 2.6e-10
 Identities = 30/90 (33%), Positives = 51/90 (56%)

Query:    28 PPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYA 87
             P +    +P   LFV+ L+ +T +E L++ FS +G++   ++V+   +G+SKG+ F++Y 
Sbjct:    41 PNKGVTGDPLLTLFVARLNLQTKEEKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYK 100

Query:    88 TLEAAGKAIEGMDGKFLDGWVIFVEYAKPR 117
                A  KA    DG  +D   IFV+Y   R
Sbjct:   101 EERALMKAYRDADGLVIDQHEIFVDYELER 130


>RGD|1310759 [details] [associations]
            symbol:Pabpc2 "poly(A) binding protein, cytoplasmic 2"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1310759
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            EMBL:CH473974 GeneTree:ENSGT00640000091232 IPI:IPI00200243
            RefSeq:NP_001099621.1 UniGene:Rn.127161 Ensembl:ENSRNOT00000019467
            GeneID:291615 KEGG:rno:291615 UCSC:RGD:1310759 CTD:18459
            OMA:VSEMNGR OrthoDB:EOG4BK55N NextBio:632859 Uniprot:D4A233
        Length = 630

 Score = 156 (60.0 bits), Expect = 2.7e-10, P = 2.7e-10
 Identities = 45/118 (38%), Positives = 61/118 (51%)

Query:    10 PRGLRRLFSTSPFSSSLNPPQR---PQAEPST------NLFVSGLSKRTTDETLRDTFSA 60
             P    R   T  F      P R    Q +PS       N+F+  L+K   ++ L DTFSA
Sbjct:    62 PADAERALDTMNFDVIKGKPVRIMWSQRDPSLRRSGVGNVFIKNLNKTIDNKALYDTFSA 121

Query:    61 FGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKPRQ 118
             FG ++  K+V   E+G SKG GFV + T EAA +AIE M+G  L+   +FV   K R+
Sbjct:   122 FGNILSCKVVCD-ENG-SKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFVGQFKSRK 177

 Score = 147 (56.8 bits), Expect = 2.5e-09, P = 2.5e-09
 Identities = 32/80 (40%), Positives = 48/80 (60%)

Query:    38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
             TN+++     R  D+TL   F  FG+V+  K++   E G SKGFGFV +   E A KA++
Sbjct:   191 TNVYIKNFGDRMDDKTLNGLFGRFGQVLSVKVMTD-EGGKSKGFGFVSFERHEDAQKAVD 249

Query:    98 GMDGKFLDGWVIFVEYAKPR 117
              M+GK L+G  I+V  A+ +
Sbjct:   250 EMNGKELNGKHIYVGPAQKK 269

 Score = 129 (50.5 bits), Expect = 2.2e-07, P = 2.2e-07
 Identities = 29/80 (36%), Positives = 46/80 (57%)

Query:    39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
             NL+V  L     DE L+  FS FG +   K++   E G SKGFGFV +++ E A KA+  
Sbjct:   295 NLYVKNLDDGIDDERLQKEFSPFGTITSTKVMT--EGGRSKGFGFVCFSSPEEATKAVSE 352

Query:    99 MDGKFLDGWVIFVEYAKPRQ 118
             M+G+ +    ++V  A+ ++
Sbjct:   353 MNGRIVATKPLYVALAQRKE 372


>UNIPROTKB|E2R4B2 [details] [associations]
            symbol:TRA2A "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 OMA:DRYEEYD EMBL:AAEX03009371
            Ensembl:ENSCAFT00000004456 Uniprot:E2R4B2
        Length = 278

 Score = 149 (57.5 bits), Expect = 2.7e-10, P = 2.7e-10
 Identities = 40/111 (36%), Positives = 61/111 (54%)

Query:    14 RRLFSTSPFSSSL-NPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKH 72
             RR  S SP S+   +   R   +P+T L V GLS  TT+  LR+ FS +G +    +V  
Sbjct:    94 RRSRSHSPMSNRRRHTGSRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYD 153

Query:    73 RESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYA--KPRQPPT 121
             + +G S+GF FV +  ++ + +A+E  +G  LDG  I V+Y+  K    PT
Sbjct:   154 QRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVDYSITKRAHTPT 204


>UNIPROTKB|P20965 [details] [associations]
            symbol:pabpc1-a "Polyadenylate-binding protein 1-A"
            species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
            evidence=IPI] [GO:0005844 "polysome" evidence=IDA] [GO:0008143
            "poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
            initiation factor 4G binding" evidence=IPI] [GO:0043621 "protein
            self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
            evidence=IDA] [GO:0060212 "negative regulation of
            nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
            GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0005844 GO:GO:0060212
            GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
            SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:M27072 EMBL:X57483
            EMBL:BC052100 PIR:A32323 RefSeq:NP_001080204.1 UniGene:Xl.35547
            ProteinModelPortal:P20965 SMR:P20965 PRIDE:P20965 GeneID:379896
            KEGG:xla:379896 CTD:379896 Xenbase:XB-GENE-963463 Uniprot:P20965
        Length = 633

 Score = 156 (60.0 bits), Expect = 2.7e-10, P = 2.7e-10
 Identities = 44/118 (37%), Positives = 61/118 (51%)

Query:    10 PRGLRRLFSTSPFSSSLNPPQR---PQAEPST------NLFVSGLSKRTTDETLRDTFSA 60
             P    R   T  F      P R    Q +PS       N+F+  L K   ++ L DTFSA
Sbjct:    62 PADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSA 121

Query:    61 FGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKPRQ 118
             FG ++  K+V   E+G SKG+GFV + T EAA +AI+ M+G  L+   +FV   K R+
Sbjct:   122 FGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRK 177

 Score = 135 (52.6 bits), Expect = 4.9e-08, P = 4.9e-08
 Identities = 28/85 (32%), Positives = 50/85 (58%)

Query:    33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
             +A+  TN+++        DE L++ F  +G  +  K++   ++G SKGFGFV +   E A
Sbjct:   186 RAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTD-DNGKSKGFGFVSFERHEDA 244

Query:    93 GKAIEGMDGKFLDGWVIFVEYAKPR 117
              KA++ M+GK ++G  +FV  A+ +
Sbjct:   245 QKAVDEMNGKDMNGKSMFVGRAQKK 269

 Score = 130 (50.8 bits), Expect = 1.7e-07, P = 1.7e-07
 Identities = 30/80 (37%), Positives = 46/80 (57%)

Query:    39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
             NL+V  L     DE LR  F  FG +  AK++   E G SKGFGFV +++ E A KA+  
Sbjct:   295 NLYVKNLDDGIDDERLRKEFLPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTE 352

Query:    99 MDGKFLDGWVIFVEYAKPRQ 118
             M+G+ +    ++V  A+ ++
Sbjct:   353 MNGRIVATKPLYVALAQRKE 372


>UNIPROTKB|Q06AA6 [details] [associations]
            symbol:TRA2A "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0000398 "mRNA
            splicing, via spliceosome" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0000398 eggNOG:COG0724
            HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309 CTD:29896
            HOVERGEN:HBG102125 KO:K12897 OMA:DRYEEYD OrthoDB:EOG4BVRW2
            EMBL:CU928731 EMBL:DQ972958 RefSeq:NP_001070691.1 UniGene:Ssc.14084
            SMR:Q06AA6 Ensembl:ENSSSCT00000016762 GeneID:768110 KEGG:ssc:768110
            Uniprot:Q06AA6
        Length = 279

 Score = 149 (57.5 bits), Expect = 2.8e-10, P = 2.8e-10
 Identities = 40/111 (36%), Positives = 61/111 (54%)

Query:    14 RRLFSTSPFSSSL-NPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKH 72
             RR  S SP S+   +   R   +P+T L V GLS  TT+  LR+ FS +G +    +V  
Sbjct:    94 RRSRSHSPMSNRRRHTGSRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYD 153

Query:    73 RESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYA--KPRQPPT 121
             + +G S+GF FV +  ++ + +A+E  +G  LDG  I V+Y+  K    PT
Sbjct:   154 QRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVDYSITKRAHTPT 204


>TAIR|locus:2173338 [details] [associations]
            symbol:SC35 "ortholog of human splicing factor SC35"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISM] [GO:0000398 "mRNA splicing, via
            spliceosome" evidence=RCA;TAS] [GO:0016607 "nuclear speck"
            evidence=IDA] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0016020
            "membrane" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
            [GO:0030422 "production of siRNA involved in RNA interference"
            evidence=RCA] [GO:0035196 "production of miRNAs involved in gene
            silencing by miRNA" evidence=RCA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005829 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0016020
            GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AB008268 HSSP:P19339 GO:GO:0000398 eggNOG:COG0724
            HOGENOM:HOG000276233 KO:K12891 OMA:DHRRRTR EMBL:AY063890
            EMBL:AY122917 EMBL:AY127004 EMBL:AY143851 IPI:IPI00549029
            RefSeq:NP_201225.1 RefSeq:NP_851261.1 UniGene:At.23698
            UniGene:At.49215 ProteinModelPortal:Q9FMG4 SMR:Q9FMG4 STRING:Q9FMG4
            PaxDb:Q9FMG4 PRIDE:Q9FMG4 EnsemblPlants:AT5G64200.1
            EnsemblPlants:AT5G64200.2 GeneID:836541 KEGG:ath:AT5G64200
            TAIR:At5g64200 InParanoid:Q9FMG4 ProtClustDB:CLSN2914827
            ArrayExpress:Q9FMG4 Genevestigator:Q9FMG4 Uniprot:Q9FMG4
        Length = 303

 Score = 150 (57.9 bits), Expect = 2.8e-10, P = 2.8e-10
 Identities = 32/84 (38%), Positives = 51/84 (60%)

Query:    32 PQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEA 91
             P    + +L V  ++ RTT + L   F+ +G+VV   I + R +G S+GF FV+Y   + 
Sbjct:    10 PDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDE 69

Query:    92 AGKAIEGMDGKFLDGWVIFVEYAK 115
             A KA+E +DG+ +DG  I V++AK
Sbjct:    70 AHKAVERLDGRVVDGREITVQFAK 93


>UNIPROTKB|Q2KJ71 [details] [associations]
            symbol:TRA2A "Transformer 2 alpha homolog (Drosophila)"
            species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
            [GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GO:GO:0000398 eggNOG:COG0724 HOGENOM:HOG000276232
            GeneTree:ENSGT00700000104309 CTD:29896 HOVERGEN:HBG102125 KO:K12897
            OMA:DRYEEYD OrthoDB:EOG4BVRW2 EMBL:DAAA02010222 EMBL:BC105489
            IPI:IPI00695902 RefSeq:NP_001039845.1 UniGene:Bt.43563 SMR:Q2KJ71
            STRING:Q2KJ71 Ensembl:ENSBTAT00000016756 GeneID:534586
            KEGG:bta:534586 InParanoid:Q2KJ71 NextBio:20876456 Uniprot:Q2KJ71
        Length = 281

 Score = 149 (57.5 bits), Expect = 2.8e-10, P = 2.8e-10
 Identities = 40/111 (36%), Positives = 61/111 (54%)

Query:    14 RRLFSTSPFSSSL-NPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKH 72
             RR  S SP S+   +   R   +P+T L V GLS  TT+  LR+ FS +G +    +V  
Sbjct:    94 RRSRSHSPMSNRRRHTGSRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYD 153

Query:    73 RESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYA--KPRQPPT 121
             + +G S+GF FV +  ++ + +A+E  +G  LDG  I V+Y+  K    PT
Sbjct:   154 QRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVDYSITKRAHTPT 204


>MGI|MGI:1933972 [details] [associations]
            symbol:Tra2a "transformer 2 alpha homolog (Drosophila)"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=ISS] [GO:0005515 "protein
            binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;IDA]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
            splicing" evidence=IEA] [GO:0042802 "identical protein binding"
            evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 MGI:MGI:1933972 GO:GO:0005634
            GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000276232
            HOVERGEN:HBG102125 OrthoDB:EOG4BVRW2 ChiTaRS:TRA2A EMBL:BC057448
            IPI:IPI01008014 UniGene:Mm.196598 ProteinModelPortal:Q6PFR5
            SMR:Q6PFR5 IntAct:Q6PFR5 STRING:Q6PFR5 PhosphoSite:Q6PFR5
            PaxDb:Q6PFR5 PRIDE:Q6PFR5 UCSC:uc009bwm.1 InParanoid:Q6PFR5
            CleanEx:MM_TRA2A Genevestigator:Q6PFR5
            GermOnline:ENSMUSG00000029817 Uniprot:Q6PFR5
        Length = 281

 Score = 149 (57.5 bits), Expect = 2.8e-10, P = 2.8e-10
 Identities = 40/111 (36%), Positives = 61/111 (54%)

Query:    14 RRLFSTSPFSSSL-NPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKH 72
             RR  S SP S+   +   R   +P+T L V GLS  TT+  LR+ FS +G +    +V  
Sbjct:    92 RRSRSHSPMSNRRRHTGSRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYD 151

Query:    73 RESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYA--KPRQPPT 121
             + +G S+GF FV +  ++ + +A+E  +G  LDG  I V+Y+  K    PT
Sbjct:   152 QRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVDYSITKRAHTPT 202


>POMBASE|SPAC57A7.04c [details] [associations]
            symbol:pabp "mRNA export shuttling protein"
            species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
            translational initiation" evidence=NAS] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
            "cytosol" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
            evidence=IMP] [GO:0006446 "regulation of translational initiation"
            evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=TAS]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 PomBase:SPAC57A7.04c
            GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR
            GO:GO:0000166 GO:GO:0006446 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0006406 eggNOG:COG0724 GO:GO:0002183 GO:GO:0008143 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            HOGENOM:HOG000217922 OrthoDB:EOG4QJVWJ EMBL:M64603 PIR:T38950
            RefSeq:NP_593377.1 ProteinModelPortal:P31209 SMR:P31209
            IntAct:P31209 STRING:P31209 PRIDE:P31209
            EnsemblFungi:SPAC57A7.04c.1 GeneID:2541505 KEGG:spo:SPAC57A7.04c
            OMA:ANHECAQ NextBio:20802604 Uniprot:P31209
        Length = 653

 Score = 156 (60.0 bits), Expect = 2.9e-10, P = 2.9e-10
 Identities = 35/80 (43%), Positives = 47/80 (58%)

Query:    39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
             NLF+  L     DE L+  FSAFG +  AKI+   E G SKGFGFV Y T E A KA+  
Sbjct:   365 NLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTD-EQGKSKGFGFVCYTTPEEANKAVTE 423

Query:    99 MDGKFLDGWVIFVEYAKPRQ 118
             M+ + L G  ++V  A+ ++
Sbjct:   424 MNQRMLAGKPLYVALAQRKE 443

 Score = 136 (52.9 bits), Expect = 4.0e-08, P = 4.0e-08
 Identities = 28/80 (35%), Positives = 49/80 (61%)

Query:    39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
             N+F+  L     ++ L DTFSAFG+++  K+    E G +KG+GFV + ++E+A  AIE 
Sbjct:   169 NVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVD-ELGNAKGYGFVHFDSVESANAAIEH 227

Query:    99 MDGKFLDGWVIFVEYAKPRQ 118
             ++G  L+   ++V +   R+
Sbjct:   228 VNGMLLNDKKVYVGHHVSRR 247

 Score = 126 (49.4 bits), Expect = 4.7e-07, P = 4.7e-07
 Identities = 26/80 (32%), Positives = 44/80 (55%)

Query:    38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
             TN+++  L    T++   D F  FGE+    +VK  ++   +GFGFV YA  E A KA++
Sbjct:   261 TNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKD-QNDKPRGFGFVNYANHECAQKAVD 319

Query:    98 GMDGKFLDGWVIFVEYAKPR 117
              ++ K   G  ++V  A+ +
Sbjct:   320 ELNDKEYKGKKLYVGRAQKK 339


>UNIPROTKB|Q13595 [details] [associations]
            symbol:TRA2A "Transformer-2 protein homolog alpha"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000398
            "mRNA splicing, via spliceosome" evidence=IDA] [GO:0005634
            "nucleus" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000398
            eggNOG:COG0724 HOGENOM:HOG000276232 EMBL:U53209 EMBL:BC017094
            IPI:IPI00013891 IPI:IPI00220447 RefSeq:NP_037425.1
            UniGene:Hs.445652 ProteinModelPortal:Q13595 SMR:Q13595
            IntAct:Q13595 MINT:MINT-1683046 STRING:Q13595 PhosphoSite:Q13595
            DMDM:4033480 PaxDb:Q13595 PRIDE:Q13595 DNASU:29896
            Ensembl:ENST00000297071 GeneID:29896 KEGG:hsa:29896 UCSC:uc003swi.3
            CTD:29896 GeneCards:GC07M023544 HGNC:HGNC:16645 HPA:HPA054018
            MIM:602718 neXtProt:NX_Q13595 PharmGKB:PA164726707
            HOVERGEN:HBG102125 InParanoid:Q13595 KO:K12897 OMA:DRYEEYD
            OrthoDB:EOG4BVRW2 PhylomeDB:Q13595 ChiTaRS:TRA2A GenomeRNAi:29896
            NextBio:52459 ArrayExpress:Q13595 Bgee:Q13595 Genevestigator:Q13595
            GermOnline:ENSG00000164548 Uniprot:Q13595
        Length = 282

 Score = 149 (57.5 bits), Expect = 2.9e-10, P = 2.9e-10
 Identities = 40/111 (36%), Positives = 61/111 (54%)

Query:    14 RRLFSTSPFSSSL-NPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKH 72
             RR  S SP S+   +   R   +P+T L V GLS  TT+  LR+ FS +G +    +V  
Sbjct:    94 RRSRSHSPMSNRRRHTGSRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYD 153

Query:    73 RESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYA--KPRQPPT 121
             + +G S+GF FV +  ++ + +A+E  +G  LDG  I V+Y+  K    PT
Sbjct:   154 QRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVDYSITKRAHTPT 204


>RGD|1562563 [details] [associations]
            symbol:Tra2a "transformer 2 alpha homolog (Drosophila)"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=IEA;ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
            evidence=IEA;ISO] [GO:0042802 "identical protein binding"
            evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 RGD:1562563 GO:GO:0005634
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0000398
            eggNOG:COG0724 HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309
            HOVERGEN:HBG102125 OrthoDB:EOG4BVRW2 EMBL:BC161978 IPI:IPI00201580
            UniGene:Rn.203363 SMR:B1WC25 STRING:B1WC25
            Ensembl:ENSRNOT00000012325 UCSC:RGD:1562563 Genevestigator:B1WC25
            Uniprot:B1WC25
        Length = 282

 Score = 149 (57.5 bits), Expect = 2.9e-10, P = 2.9e-10
 Identities = 40/111 (36%), Positives = 61/111 (54%)

Query:    14 RRLFSTSPFSSSL-NPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKH 72
             RR  S SP S+   +   R   +P+T L V GLS  TT+  LR+ FS +G +    +V  
Sbjct:    92 RRSRSHSPMSNRRRHTGSRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYD 151

Query:    73 RESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYA--KPRQPPT 121
             + +G S+GF FV +  ++ + +A+E  +G  LDG  I V+Y+  K    PT
Sbjct:   152 QRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVDYSITKRAHTPT 202


>UNIPROTKB|H3BNY3 [details] [associations]
            symbol:PABPC3 "Polyadenylate-binding protein 3"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL359757 TIGRFAMs:TIGR01628
            HGNC:HGNC:8556 ProteinModelPortal:H3BNY3 SMR:H3BNY3
            Ensembl:ENST00000569397 Bgee:H3BNY3 Uniprot:H3BNY3
        Length = 347

 Score = 151 (58.2 bits), Expect = 3.1e-10, P = 3.1e-10
 Identities = 35/80 (43%), Positives = 50/80 (62%)

Query:    39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
             N+FV  L K   ++ L DT SAFG ++   +V   E+G SKG+GFV + T EAA +AI+ 
Sbjct:   100 NIFVKNLDKSINNKALYDTVSAFGNILSCNVVCD-ENG-SKGYGFVHFETHEAAERAIKK 157

Query:    99 MDGKFLDGWVIFVEYAKPRQ 118
             M+G  L+G  +FV   K R+
Sbjct:   158 MNGMLLNGRKVFVGQFKSRK 177

 Score = 145 (56.1 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 32/85 (37%), Positives = 50/85 (58%)

Query:    33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
             +A+   N+++    +   DE L+D F  FG  +  K++   ESG SKGFGFV +   E A
Sbjct:   186 RAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDA 244

Query:    93 GKAIEGMDGKFLDGWVIFVEYAKPR 117
              KA++ M+GK L+G  I+V  A+ +
Sbjct:   245 QKAVDEMNGKELNGKQIYVGRAQKK 269

 Score = 110 (43.8 bits), Expect = 9.6e-06, P = 9.6e-06
 Identities = 25/54 (46%), Positives = 32/54 (59%)

Query:    39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
             NL+V  L     DE LR  FS FG +  AK++   E G SKGFGFV +++ E A
Sbjct:   295 NLYVKNLDDGIDDERLRKAFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEA 346


>UNIPROTKB|P30352 [details] [associations]
            symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
            species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
            "mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 KO:K12891 CTD:6427
            EMBL:X62446 IPI:IPI00591371 PIR:B42701 RefSeq:NP_001001305.1
            UniGene:Gga.9923 ProteinModelPortal:P30352 SMR:P30352 PRIDE:P30352
            GeneID:396195 KEGG:gga:396195 NextBio:20816247 Uniprot:P30352
        Length = 221

 Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
 Identities = 35/93 (37%), Positives = 51/93 (54%)

Query:    28 PPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYA 87
             PP  P  E  T+L V  L+ RT+ +TLR  F  +G V    I + R +  S+GF FV++ 
Sbjct:     6 PP--PDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFH 63

Query:    88 TLEAAGKAIEGMDGKFLDGWVIFVEYAKPRQPP 120
                 A  A++ MDG  LDG  + V+ A+  +PP
Sbjct:    64 DKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 96


>UNIPROTKB|Q3MHR5 [details] [associations]
            symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
            species:9913 "Bos taurus" [GO:0016607 "nuclear speck" evidence=IEA]
            [GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0008380 "RNA
            splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
            GO:GO:0000166 GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0005681 GO:GO:0003723 HOVERGEN:HBG107480 eggNOG:NOG254270
            GeneTree:ENSGT00700000104403 KO:K12891 EMBL:BC105138
            IPI:IPI00690339 RefSeq:NP_001029490.1 UniGene:Bt.2466
            ProteinModelPortal:Q3MHR5 SMR:Q3MHR5 STRING:Q3MHR5 PRIDE:Q3MHR5
            Ensembl:ENSBTAT00000024299 GeneID:508312 KEGG:bta:508312 CTD:6427
            InParanoid:Q3MHR5 OMA:DHRRRTR OrthoDB:EOG4D26RH NextBio:20868455
            Uniprot:Q3MHR5
        Length = 221

 Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
 Identities = 35/93 (37%), Positives = 51/93 (54%)

Query:    28 PPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYA 87
             PP  P  E  T+L V  L+ RT+ +TLR  F  +G V    I + R +  S+GF FV++ 
Sbjct:     6 PP--PDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFH 63

Query:    88 TLEAAGKAIEGMDGKFLDGWVIFVEYAKPRQPP 120
                 A  A++ MDG  LDG  + V+ A+  +PP
Sbjct:    64 DKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 96


>UNIPROTKB|E2RDB2 [details] [associations]
            symbol:SRSF2 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0016607 "nuclear speck" evidence=IEA]
            [GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003676
            GeneTree:ENSGT00700000104403 KO:K12891 OMA:DHRRRTR
            EMBL:AAEX03006277 RefSeq:XP_003639286.1 RefSeq:XP_003639287.1
            ProteinModelPortal:E2RDB2 Ensembl:ENSCAFT00000008286
            GeneID:100856058 KEGG:cfa:100856058 NextBio:20898320 Uniprot:E2RDB2
        Length = 221

 Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
 Identities = 35/93 (37%), Positives = 51/93 (54%)

Query:    28 PPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYA 87
             PP  P  E  T+L V  L+ RT+ +TLR  F  +G V    I + R +  S+GF FV++ 
Sbjct:     6 PP--PDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFH 63

Query:    88 TLEAAGKAIEGMDGKFLDGWVIFVEYAKPRQPP 120
                 A  A++ MDG  LDG  + V+ A+  +PP
Sbjct:    64 DKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 96


>UNIPROTKB|B4DN89 [details] [associations]
            symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:CH471099 EMBL:AC005837 UniGene:Hs.584801 HGNC:HGNC:10783
            ChiTaRS:SRSF2 EMBL:AK297813 IPI:IPI01011463
            ProteinModelPortal:B4DN89 STRING:B4DN89 PRIDE:B4DN89
            Ensembl:ENST00000508921 UCSC:uc010wtg.2 ArrayExpress:B4DN89
            Bgee:B4DN89 Uniprot:B4DN89
        Length = 209

 Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
 Identities = 35/93 (37%), Positives = 51/93 (54%)

Query:    28 PPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYA 87
             PP  P  E  T+L V  L+ RT+ +TLR  F  +G V    I + R +  S+GF FV++ 
Sbjct:     6 PP--PDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFH 63

Query:    88 TLEAAGKAIEGMDGKFLDGWVIFVEYAKPRQPP 120
                 A  A++ MDG  LDG  + V+ A+  +PP
Sbjct:    64 DKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 96


>UNIPROTKB|H0YEQ8 [details] [associations]
            symbol:PABPC4 "Polyadenylate-binding protein 4"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
            Ensembl:ENST00000470443 Uniprot:H0YEQ8
        Length = 112

 Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
 Identities = 41/105 (39%), Positives = 54/105 (51%)

Query:    10 PRGLRRLFSTSPFSSSLNPPQR---PQAEPST------NLFVSGLSKRTTDETLRDTFSA 60
             P    R   T  F      P R    Q +PS       N+F+  L K   ++ L DTFSA
Sbjct:     6 PADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 65

Query:    61 FGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLD 105
             FG ++  K+V   E+G SKG+ FV + T EAA KAIE M+G  L+
Sbjct:    66 FGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKMNGMLLN 108


>UNIPROTKB|J3KP15 [details] [associations]
            symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AC005837 HGNC:HGNC:10783 ChiTaRS:SRSF2 Ensembl:ENST00000358156
            Uniprot:J3KP15
        Length = 134

 Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
 Identities = 35/93 (37%), Positives = 51/93 (54%)

Query:    28 PPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYA 87
             PP  P  E  T+L V  L+ RT+ +TLR  F  +G V    I + R +  S+GF FV++ 
Sbjct:     6 PP--PDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFH 63

Query:    88 TLEAAGKAIEGMDGKFLDGWVIFVEYAKPRQPP 120
                 A  A++ MDG  LDG  + V+ A+  +PP
Sbjct:    64 DKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 96


>UNIPROTKB|J3QL05 [details] [associations]
            symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AC005837 HGNC:HGNC:10783 ChiTaRS:SRSF2 Ensembl:ENST00000583836
            Uniprot:J3QL05
        Length = 130

 Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
 Identities = 35/93 (37%), Positives = 51/93 (54%)

Query:    28 PPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYA 87
             PP  P  E  T+L V  L+ RT+ +TLR  F  +G V    I + R +  S+GF FV++ 
Sbjct:     6 PP--PDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFH 63

Query:    88 TLEAAGKAIEGMDGKFLDGWVIFVEYAKPRQPP 120
                 A  A++ MDG  LDG  + V+ A+  +PP
Sbjct:    64 DKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 96


>UNIPROTKB|Q01130 [details] [associations]
            symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005681
            "spliceosomal complex" evidence=IEA] [GO:0016605 "PML body"
            evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0003714
            "transcription corepressor activity" evidence=NAS] [GO:0016607
            "nuclear speck" evidence=IDA] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0006397 "mRNA processing" evidence=TAS]
            [GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS]
            [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366 "transcription
            from RNA polymerase II promoter" evidence=TAS] [GO:0006369
            "termination of RNA polymerase II transcription" evidence=TAS]
            [GO:0006406 "mRNA export from nucleus" evidence=TAS] [GO:0008380
            "RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
            evidence=TAS] [GO:0031124 "mRNA 3'-end processing" evidence=TAS]
            Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0003714
            GO:GO:0000166 GO:GO:0016607 Reactome:REACT_1675 Gene3D:3.30.70.330
            GO:GO:0005681 GO:GO:0003723 EMBL:CH471099 GO:GO:0006406
            GO:GO:0000398 Reactome:REACT_1788 GO:GO:0006369 GO:GO:0031124
            HOVERGEN:HBG107480 Reactome:REACT_78 eggNOG:NOG254270 KO:K12891
            CTD:6427 OMA:DHRRRTR EMBL:M90104 EMBL:X62447 EMBL:X75755
            EMBL:BT007250 EMBL:AK124792 EMBL:BC000339 EMBL:BC001303
            EMBL:BC070086 EMBL:L03693 IPI:IPI00005978 RefSeq:NP_001182356.1
            RefSeq:NP_003007.2 UniGene:Hs.584801 PDB:2KN4 PDB:2LEA PDB:2LEB
            PDB:2LEC PDBsum:2KN4 PDBsum:2LEA PDBsum:2LEB PDBsum:2LEC
            ProteinModelPortal:Q01130 SMR:Q01130 IntAct:Q01130
            MINT:MINT-2863034 STRING:Q01130 PhosphoSite:Q01130 DMDM:60416437
            PaxDb:Q01130 PeptideAtlas:Q01130 PRIDE:Q01130 DNASU:6427
            Ensembl:ENST00000359995 Ensembl:ENST00000392485
            Ensembl:ENST00000452355 Ensembl:ENST00000585202 GeneID:6427
            KEGG:hsa:6427 UCSC:uc002jsv.3 GeneCards:GC17M074731 HGNC:HGNC:10783
            MIM:600813 neXtProt:NX_Q01130 PharmGKB:PA35699 InParanoid:Q01130
            ChiTaRS:SRSF2 EvolutionaryTrace:Q01130 GenomeRNAi:6427
            NextBio:24961 ArrayExpress:Q01130 Bgee:Q01130 CleanEx:HS_SFRS2
            Genevestigator:Q01130 GermOnline:ENSG00000161547 Uniprot:Q01130
        Length = 221

 Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
 Identities = 35/93 (37%), Positives = 51/93 (54%)

Query:    28 PPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYA 87
             PP  P  E  T+L V  L+ RT+ +TLR  F  +G V    I + R +  S+GF FV++ 
Sbjct:     6 PP--PDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFH 63

Query:    88 TLEAAGKAIEGMDGKFLDGWVIFVEYAKPRQPP 120
                 A  A++ MDG  LDG  + V+ A+  +PP
Sbjct:    64 DKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 96


>UNIPROTKB|Q06A98 [details] [associations]
            symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
            species:9823 "Sus scrofa" [GO:0016607 "nuclear speck" evidence=IEA]
            [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
            processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 KO:K12891 CTD:6427 EMBL:DQ972966
            RefSeq:NP_001070697.1 UniGene:Ssc.1002 ProteinModelPortal:Q06A98
            SMR:Q06A98 GeneID:768117 KEGG:ssc:768117 Uniprot:Q06A98
        Length = 221

 Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
 Identities = 35/93 (37%), Positives = 51/93 (54%)

Query:    28 PPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYA 87
             PP  P  E  T+L V  L+ RT+ +TLR  F  +G V    I + R +  S+GF FV++ 
Sbjct:     6 PP--PDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFH 63

Query:    88 TLEAAGKAIEGMDGKFLDGWVIFVEYAKPRQPP 120
                 A  A++ MDG  LDG  + V+ A+  +PP
Sbjct:    64 DKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 96


>MGI|MGI:98284 [details] [associations]
            symbol:Srsf2 "serine/arginine-rich splicing factor 2"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
            binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;IDA]
            [GO:0005681 "spliceosomal complex" evidence=IDA] [GO:0006397 "mRNA
            processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
            [GO:0016607 "nuclear speck" evidence=ISO;IDA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            MGI:MGI:98284 GO:GO:0008380 GO:GO:0000166 GO:GO:0016607
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
            HOVERGEN:HBG107480 UniGene:Mm.429312 eggNOG:NOG254270
            GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427 OMA:DHRRRTR
            OrthoDB:EOG4D26RH ChiTaRS:SRSF2 EMBL:U14648 EMBL:AF077858
            EMBL:AK086103 EMBL:AK088042 EMBL:AK165670 EMBL:BC005493 EMBL:X98511
            IPI:IPI00121135 PIR:A55335 RefSeq:NP_035488.1 UniGene:Mm.21841
            UniGene:Mm.469331 ProteinModelPortal:Q62093 SMR:Q62093
            DIP:DIP-44831N IntAct:Q62093 STRING:Q62093 PhosphoSite:Q62093
            PaxDb:Q62093 PRIDE:Q62093 Ensembl:ENSMUST00000092404
            Ensembl:ENSMUST00000136914 GeneID:20382 KEGG:mmu:20382
            NextBio:298298 Bgee:Q62093 CleanEx:MM_SFRS2 Genevestigator:Q62093
            GermOnline:ENSMUSG00000034120 Uniprot:Q62093
        Length = 221

 Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
 Identities = 35/93 (37%), Positives = 51/93 (54%)

Query:    28 PPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYA 87
             PP  P  E  T+L V  L+ RT+ +TLR  F  +G V    I + R +  S+GF FV++ 
Sbjct:     6 PP--PDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFH 63

Query:    88 TLEAAGKAIEGMDGKFLDGWVIFVEYAKPRQPP 120
                 A  A++ MDG  LDG  + V+ A+  +PP
Sbjct:    64 DKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 96


>RGD|1359422 [details] [associations]
            symbol:Srsf2 "serine/arginine-rich splicing factor 2"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=ISO] [GO:0005681 "spliceosomal complex" evidence=IEA;ISO]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
            splicing" evidence=IEA] [GO:0016607 "nuclear speck"
            evidence=IEA;ISO] [GO:0016605 "PML body" evidence=ISO]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 RGD:1359422 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG107480
            eggNOG:NOG254270 GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427
            OrthoDB:EOG4D26RH EMBL:BC058508 IPI:IPI00389420
            RefSeq:NP_001009720.1 UniGene:Rn.136644 ProteinModelPortal:Q6PDU1
            SMR:Q6PDU1 STRING:Q6PDU1 PhosphoSite:Q6PDU1 PRIDE:Q6PDU1
            Ensembl:ENSRNOT00000067739 GeneID:494445 KEGG:rno:494445
            NextBio:697633 ArrayExpress:Q6PDU1 Genevestigator:Q6PDU1
            Uniprot:Q6PDU1
        Length = 221

 Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
 Identities = 35/93 (37%), Positives = 51/93 (54%)

Query:    28 PPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYA 87
             PP  P  E  T+L V  L+ RT+ +TLR  F  +G V    I + R +  S+GF FV++ 
Sbjct:     6 PP--PDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFH 63

Query:    88 TLEAAGKAIEGMDGKFLDGWVIFVEYAKPRQPP 120
                 A  A++ MDG  LDG  + V+ A+  +PP
Sbjct:    64 DKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 96


>UNIPROTKB|Q6PDU1 [details] [associations]
            symbol:Srsf2 "Serine/arginine-rich splicing factor 2"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 RGD:1359422 GO:GO:0005634
            GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0003723 HOVERGEN:HBG107480 eggNOG:NOG254270
            GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427 OrthoDB:EOG4D26RH
            EMBL:BC058508 IPI:IPI00389420 RefSeq:NP_001009720.1
            UniGene:Rn.136644 ProteinModelPortal:Q6PDU1 SMR:Q6PDU1
            STRING:Q6PDU1 PhosphoSite:Q6PDU1 PRIDE:Q6PDU1
            Ensembl:ENSRNOT00000067739 GeneID:494445 KEGG:rno:494445
            NextBio:697633 ArrayExpress:Q6PDU1 Genevestigator:Q6PDU1
            Uniprot:Q6PDU1
        Length = 221

 Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
 Identities = 35/93 (37%), Positives = 51/93 (54%)

Query:    28 PPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYA 87
             PP  P  E  T+L V  L+ RT+ +TLR  F  +G V    I + R +  S+GF FV++ 
Sbjct:     6 PP--PDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFH 63

Query:    88 TLEAAGKAIEGMDGKFLDGWVIFVEYAKPRQPP 120
                 A  A++ MDG  LDG  + V+ A+  +PP
Sbjct:    64 DKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 96


>WB|WBGene00007396 [details] [associations]
            symbol:tiar-3 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0019722
            "calcium-mediated signaling" evidence=IEA] [GO:0016021 "integral to
            membrane" evidence=IEA] [GO:0009792 "embryo development ending in
            birth or egg hatching" evidence=IMP] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            eggNOG:COG0724 GeneTree:ENSGT00680000099967 EMBL:Z78536
            RefSeq:NP_509705.3 ProteinModelPortal:Q93194 SMR:Q93194
            EnsemblMetazoa:C07A4.1 GeneID:182350 KEGG:cel:CELE_C07A4.1
            UCSC:C07A4.1 CTD:182350 WormBase:C07A4.1 OMA:ASEPPME Uniprot:Q93194
        Length = 450

 Score = 153 (58.9 bits), Expect = 3.3e-10, P = 3.3e-10
 Identities = 32/83 (38%), Positives = 52/83 (62%)

Query:    24 SSLNPPQRPQAEPSTN--LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGF 81
             S+  PP   + + S +  +FV  LSK  ++E L+ TF+ FGEV  AK+++  ++  SKG+
Sbjct:   209 SASEPPMEMRIDTSKHFHVFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGY 268

Query:    82 GFVKYATLEAAGKAIEGMDGKFL 104
             GFV +   + A  AI GM+GK++
Sbjct:   269 GFVSFPNKQNAENAIAGMNGKWI 291

 Score = 121 (47.7 bits), Expect = 9.5e-07, P = 9.5e-07
 Identities = 27/84 (32%), Positives = 48/84 (57%)

Query:    37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
             +T+++V  +S++TTD  LRD FS +G++   +I K      ++ + FV+Y   E A KAI
Sbjct:   326 NTSVYVGNISQQTTDADLRDLFSTYGDIAEVRIFK------TQRYAFVRYEKKECATKAI 379

Query:    97 EGMDGKFLDGWVIFVEYAKPRQPP 120
               M+GK + G  +   + + +  P
Sbjct:   380 MEMNGKEMAGNQVRCSWGRTQAVP 403


>GENEDB_PFALCIPARUM|PF14_0194 [details] [associations]
            symbol:PF14_0194 "spliceosome-associated
            protein, putative" species:5833 "Plasmodium falciparum" [GO:0005681
            "spliceosomal complex" evidence=ISS] [GO:0008380 "RNA splicing"
            evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0008380 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003676 EMBL:AE014187
            HSSP:P11940 KO:K12831 RefSeq:XP_001348367.1
            ProteinModelPortal:Q8ILQ0 IntAct:Q8ILQ0 MINT:MINT-1577513
            EnsemblProtists:PF14_0194:mRNA GeneID:811775 KEGG:pfa:PF14_0194
            EuPathDB:PlasmoDB:PF3D7_1420000 ProtClustDB:CLSZ2501032
            Uniprot:Q8ILQ0
        Length = 484

 Score = 135 (52.6 bits), Expect = 3.3e-10, Sum P(2) = 3.3e-10
 Identities = 26/76 (34%), Positives = 45/76 (59%)

Query:    39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
             NLF+  L     ++ L D FS+FG+++  K++++ E   SKG GF+ Y   E++  AIE 
Sbjct:   108 NLFIGNLDDEVDEKMLFDIFSSFGQIMTVKVMRN-EDDTSKGHGFISYDNFESSDLAIEN 166

Query:    99 MDGKFLDGWVIFVEYA 114
             M+ +F+    + + YA
Sbjct:   167 MNNQFICNKKVHISYA 182

 Score = 40 (19.1 bits), Expect = 3.3e-10, Sum P(2) = 3.3e-10
 Identities = 8/16 (50%), Positives = 10/16 (62%)

Query:   116 PRQPPTLPS--QNNTN 129
             P  PP +PS  +NN N
Sbjct:   458 PNLPPNIPSYSENNLN 473

 Score = 35 (17.4 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
 Identities = 6/8 (75%), Positives = 6/8 (75%)

Query:   116 PRQPPTLP 123
             P  PPTLP
Sbjct:   382 PNLPPTLP 389

 Score = 35 (17.4 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
 Identities = 6/8 (75%), Positives = 6/8 (75%)

Query:   116 PRQPPTLP 123
             P  PPTLP
Sbjct:   370 PNLPPTLP 377

 Score = 35 (17.4 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
 Identities = 6/8 (75%), Positives = 6/8 (75%)

Query:   116 PRQPPTLP 123
             P  PPTLP
Sbjct:   350 PNLPPTLP 357

 Score = 34 (17.0 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
 Identities = 6/8 (75%), Positives = 6/8 (75%)

Query:   116 PRQPPTLP 123
             P  PPTLP
Sbjct:   438 PNFPPTLP 445

 Score = 34 (17.0 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
 Identities = 6/8 (75%), Positives = 6/8 (75%)

Query:   116 PRQPPTLP 123
             P  PPTLP
Sbjct:   418 PNFPPTLP 425

 Score = 34 (17.0 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
 Identities = 6/8 (75%), Positives = 6/8 (75%)

Query:   116 PRQPPTLP 123
             P  PPTLP
Sbjct:   410 PNFPPTLP 417

 Score = 34 (17.0 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
 Identities = 6/8 (75%), Positives = 6/8 (75%)

Query:   116 PRQPPTLP 123
             P  PPTLP
Sbjct:   402 PNFPPTLP 409

 Score = 34 (17.0 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
 Identities = 6/8 (75%), Positives = 6/8 (75%)

Query:   116 PRQPPTLP 123
             P  PPTLP
Sbjct:   386 PTLPPTLP 393

 Score = 34 (17.0 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
 Identities = 6/8 (75%), Positives = 6/8 (75%)

Query:   116 PRQPPTLP 123
             P  PPTLP
Sbjct:   374 PTLPPTLP 381

 Score = 34 (17.0 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
 Identities = 6/8 (75%), Positives = 6/8 (75%)

Query:   116 PRQPPTLP 123
             P  PPTLP
Sbjct:   362 PTLPPTLP 369

 Score = 34 (17.0 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
 Identities = 6/8 (75%), Positives = 6/8 (75%)

Query:   116 PRQPPTLP 123
             P  PPTLP
Sbjct:   358 PTLPPTLP 365

 Score = 34 (17.0 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
 Identities = 6/8 (75%), Positives = 6/8 (75%)

Query:   116 PRQPPTLP 123
             P  PPTLP
Sbjct:   354 PTLPPTLP 361

 Score = 34 (17.0 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
 Identities = 7/15 (46%), Positives = 7/15 (46%)

Query:   116 PRQPPTLPSQNNTNF 130
             P  PP LP     NF
Sbjct:   390 PTLPPNLPPNLPPNF 404

 Score = 34 (17.0 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
 Identities = 7/15 (46%), Positives = 7/15 (46%)

Query:   116 PRQPPTLPSQNNTNF 130
             P  PP LP     NF
Sbjct:   330 PNIPPNLPPNFPPNF 344


>UNIPROTKB|Q8ILQ0 [details] [associations]
            symbol:PF14_0194 "Spliceosome-associated protein, putative"
            species:36329 "Plasmodium falciparum 3D7" [GO:0005681 "spliceosomal
            complex" evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0008380 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0005681 GO:GO:0003676 EMBL:AE014187 HSSP:P11940 KO:K12831
            RefSeq:XP_001348367.1 ProteinModelPortal:Q8ILQ0 IntAct:Q8ILQ0
            MINT:MINT-1577513 EnsemblProtists:PF14_0194:mRNA GeneID:811775
            KEGG:pfa:PF14_0194 EuPathDB:PlasmoDB:PF3D7_1420000
            ProtClustDB:CLSZ2501032 Uniprot:Q8ILQ0
        Length = 484

 Score = 135 (52.6 bits), Expect = 3.3e-10, Sum P(2) = 3.3e-10
 Identities = 26/76 (34%), Positives = 45/76 (59%)

Query:    39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
             NLF+  L     ++ L D FS+FG+++  K++++ E   SKG GF+ Y   E++  AIE 
Sbjct:   108 NLFIGNLDDEVDEKMLFDIFSSFGQIMTVKVMRN-EDDTSKGHGFISYDNFESSDLAIEN 166

Query:    99 MDGKFLDGWVIFVEYA 114
             M+ +F+    + + YA
Sbjct:   167 MNNQFICNKKVHISYA 182

 Score = 40 (19.1 bits), Expect = 3.3e-10, Sum P(2) = 3.3e-10
 Identities = 8/16 (50%), Positives = 10/16 (62%)

Query:   116 PRQPPTLPS--QNNTN 129
             P  PP +PS  +NN N
Sbjct:   458 PNLPPNIPSYSENNLN 473

 Score = 35 (17.4 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
 Identities = 6/8 (75%), Positives = 6/8 (75%)

Query:   116 PRQPPTLP 123
             P  PPTLP
Sbjct:   382 PNLPPTLP 389

 Score = 35 (17.4 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
 Identities = 6/8 (75%), Positives = 6/8 (75%)

Query:   116 PRQPPTLP 123
             P  PPTLP
Sbjct:   370 PNLPPTLP 377

 Score = 35 (17.4 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
 Identities = 6/8 (75%), Positives = 6/8 (75%)

Query:   116 PRQPPTLP 123
             P  PPTLP
Sbjct:   350 PNLPPTLP 357

 Score = 34 (17.0 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
 Identities = 6/8 (75%), Positives = 6/8 (75%)

Query:   116 PRQPPTLP 123
             P  PPTLP
Sbjct:   438 PNFPPTLP 445

 Score = 34 (17.0 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
 Identities = 6/8 (75%), Positives = 6/8 (75%)

Query:   116 PRQPPTLP 123
             P  PPTLP
Sbjct:   418 PNFPPTLP 425

 Score = 34 (17.0 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
 Identities = 6/8 (75%), Positives = 6/8 (75%)

Query:   116 PRQPPTLP 123
             P  PPTLP
Sbjct:   410 PNFPPTLP 417

 Score = 34 (17.0 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
 Identities = 6/8 (75%), Positives = 6/8 (75%)

Query:   116 PRQPPTLP 123
             P  PPTLP
Sbjct:   402 PNFPPTLP 409

 Score = 34 (17.0 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
 Identities = 6/8 (75%), Positives = 6/8 (75%)

Query:   116 PRQPPTLP 123
             P  PPTLP
Sbjct:   386 PTLPPTLP 393

 Score = 34 (17.0 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
 Identities = 6/8 (75%), Positives = 6/8 (75%)

Query:   116 PRQPPTLP 123
             P  PPTLP
Sbjct:   374 PTLPPTLP 381

 Score = 34 (17.0 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
 Identities = 6/8 (75%), Positives = 6/8 (75%)

Query:   116 PRQPPTLP 123
             P  PPTLP
Sbjct:   362 PTLPPTLP 369

 Score = 34 (17.0 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
 Identities = 6/8 (75%), Positives = 6/8 (75%)

Query:   116 PRQPPTLP 123
             P  PPTLP
Sbjct:   358 PTLPPTLP 365

 Score = 34 (17.0 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
 Identities = 6/8 (75%), Positives = 6/8 (75%)

Query:   116 PRQPPTLP 123
             P  PPTLP
Sbjct:   354 PTLPPTLP 361

 Score = 34 (17.0 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
 Identities = 7/15 (46%), Positives = 7/15 (46%)

Query:   116 PRQPPTLPSQNNTNF 130
             P  PP LP     NF
Sbjct:   390 PTLPPNLPPNLPPNF 404

 Score = 34 (17.0 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
 Identities = 7/15 (46%), Positives = 7/15 (46%)

Query:   116 PRQPPTLPSQNNTNF 130
             P  PP LP     NF
Sbjct:   330 PNIPPNLPPNFPPNF 344


>UNIPROTKB|D6W5Y5 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:CH471139 EMBL:AC004221 EMBL:AC004258 IPI:IPI00641579
            UniGene:Hs.618145 UniGene:Hs.634522 HGNC:HGNC:1982
            HOGENOM:HOG000276232 ChiTaRS:CIRBP ProteinModelPortal:D6W5Y5
            PRIDE:D6W5Y5 Ensembl:ENST00000587323 Ensembl:ENST00000587896
            Ensembl:ENST00000588230 Ensembl:ENST00000589710 ArrayExpress:D6W5Y5
            Bgee:D6W5Y5 Uniprot:D6W5Y5
        Length = 297

 Score = 149 (57.5 bits), Expect = 3.4e-10, P = 3.4e-10
 Identities = 32/81 (39%), Positives = 48/81 (59%)

Query:    34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAG 93
             A     LFV GLS  T +++L   FS +G++    +VK RE+  S+GFGFV +  ++ A 
Sbjct:     2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61

Query:    94 KAIEGMDGKFLDGWVIFVEYA 114
              A+  M+GK +DG  I V+ A
Sbjct:    62 DAMMAMNGKSVDGRQIRVDQA 82


>UNIPROTKB|Q98SP8 [details] [associations]
            symbol:epabp-a "Embryonic polyadenylate-binding protein A"
            species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
            evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008143
            "poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
            initiation factor 4G binding" evidence=IPI] [GO:0043009 "chordate
            embryonic development" evidence=IEP] [GO:0043621 "protein
            self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
            evidence=IDA] [GO:0060212 "negative regulation of
            nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
            GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0048255 GO:GO:0043009 GO:GO:0060212 GO:GO:0008143
            HOVERGEN:HBG002295 EMBL:AF338225 EMBL:BC080020
            RefSeq:NP_001082094.1 UniGene:Xl.777 ProteinModelPortal:Q98SP8
            SMR:Q98SP8 PRIDE:Q98SP8 GeneID:398221 KEGG:xla:398221 CTD:398221
            Xenbase:XB-GENE-5742498 KO:K13126 Gene3D:1.10.1900.10
            SUPFAM:SSF63570 TIGRFAMs:TIGR01628 Uniprot:Q98SP8
        Length = 629

 Score = 155 (59.6 bits), Expect = 3.5e-10, P = 3.5e-10
 Identities = 32/80 (40%), Positives = 50/80 (62%)

Query:    38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
             TN+++    +   D+ LR+ FSAFG  +  K++   +SG S+GFGFV Y   E A KA+ 
Sbjct:   191 TNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD-DSGRSRGFGFVNYGNHEEAQKAVS 249

Query:    98 GMDGKFLDGWVIFVEYAKPR 117
              M+GK ++G +I+V  A+ R
Sbjct:   250 EMNGKEVNGRMIYVGRAQKR 269

 Score = 150 (57.9 bits), Expect = 1.2e-09, P = 1.2e-09
 Identities = 33/80 (41%), Positives = 51/80 (63%)

Query:    39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
             N+F+  L +   ++ L DTFSAFG ++  K+V   E G S+G+GFV + T EAA +AI+ 
Sbjct:   100 NVFIKNLDESIDNKALYDTFSAFGNILSCKVVCD-EHG-SRGYGFVHFETHEAANRAIQT 157

Query:    99 MDGKFLDGWVIFVEYAKPRQ 118
             M+G  L+   +FV + K R+
Sbjct:   158 MNGMLLNDRKVFVGHFKSRR 177

 Score = 130 (50.8 bits), Expect = 1.7e-07, P = 1.7e-07
 Identities = 28/80 (35%), Positives = 47/80 (58%)

Query:    39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
             NL+V  L     D+ LR  F  +G +  AK++   E G+SKGFGFV +++ E A KA+  
Sbjct:   295 NLYVKNLDDGIDDDRLRKEFLPYGTITSAKVMT--EGGHSKGFGFVCFSSPEEATKAVTE 352

Query:    99 MDGKFLDGWVIFVEYAKPRQ 118
             M+G+ +    ++V  A+ ++
Sbjct:   353 MNGRIVSTKPLYVALAQRKE 372


>CGD|CAL0003839 [details] [associations]
            symbol:TIF35 species:5476 "Candida albicans" [GO:0016282
            "eukaryotic 43S preinitiation complex" evidence=IEA] [GO:0071541
            "eukaryotic translation initiation factor 3 complex, eIF3m"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0071540
            "eukaryotic translation initiation factor 3 complex, eIF3e"
            evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0002188
            "translation reinitiation" evidence=IEA] [GO:0003743 "translation
            initiation factor activity" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 InterPro:IPR017334 Pfam:PF00076
            PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360 CGD:CAL0003839
            GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003743
            eggNOG:COG0724 HSSP:O75821 KO:K03248 HAMAP:MF_03006
            InterPro:IPR024675 PANTHER:PTHR10352 Pfam:PF12353 EMBL:AACQ01000092
            RefSeq:XP_715036.1 ProteinModelPortal:Q59ZV5 STRING:Q59ZV5
            GeneID:3643308 KEGG:cal:CaO19.7236 Uniprot:Q59ZV5
        Length = 279

 Score = 148 (57.2 bits), Expect = 3.6e-10, P = 3.6e-10
 Identities = 32/93 (34%), Positives = 56/93 (60%)

Query:    27 NPPQRPQAEPSTNLFVSGLSKRTTDETLR-DTFSAFGEVVHAKIVKHRESGYSKGFGFVK 85
             N P R   + ST L VS L+    ++ LR + F+ FG +    IV++RE+G S+GF +V 
Sbjct:   186 NVPTREARDDSTTLKVSQLNSFVDEDMLRNELFAKFGPLQRVTIVRNRETGESRGFAYVS 245

Query:    86 YATLEAAGKAIEGMDGKFLDGWVIFVEYAKPRQ 118
             +AT E A +A++  +GK     ++ +E++K ++
Sbjct:   246 FATEEIAQRALDTFNGKGYHSLILHLEWSKKKK 278


>UNIPROTKB|D4A7H4 [details] [associations]
            symbol:Tia1 "Protein Tia1" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            IPI:IPI00214634 ProteinModelPortal:D4A7H4
            Ensembl:ENSRNOT00000023323 Uniprot:D4A7H4
        Length = 281

 Score = 148 (57.2 bits), Expect = 3.7e-10, P = 3.7e-10
 Identities = 40/126 (31%), Positives = 63/126 (50%)

Query:     5 AAVAAPRGLRRLFSTSPFSSSLNPP-QRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGE 63
             AA+AA  G + +      + +  P  Q+       ++FV  LS   T E ++  F+ FG 
Sbjct:    57 AALAAMNGRKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGR 116

Query:    64 VVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKPRQPPTLP 123
             +  A++VK   +G SKG+GFV +     A  AI+ M G++L G  I   +A  R+PP   
Sbjct:   117 ISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT-RKPPAPK 175

Query:   124 SQNNTN 129
             S   +N
Sbjct:   176 STYESN 181


>UNIPROTKB|C9JTN7 [details] [associations]
            symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000206748
            EMBL:AC016700 HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00927286
            ProteinModelPortal:C9JTN7 SMR:C9JTN7 STRING:C9JTN7
            Ensembl:ENST00000445587 ArrayExpress:C9JTN7 Bgee:C9JTN7
            Uniprot:C9JTN7
        Length = 285

 Score = 148 (57.2 bits), Expect = 3.9e-10, P = 3.9e-10
 Identities = 40/126 (31%), Positives = 63/126 (50%)

Query:     5 AAVAAPRGLRRLFSTSPFSSSLNPP-QRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGE 63
             AA+AA  G + +      + +  P  Q+       ++FV  LS   T E ++  F+ FG 
Sbjct:    61 AALAAMNGRKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGR 120

Query:    64 VVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKPRQPPTLP 123
             +  A++VK   +G SKG+GFV +     A  AI+ M G++L G  I   +A  R+PP   
Sbjct:   121 ISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT-RKPPAPK 179

Query:   124 SQNNTN 129
             S   +N
Sbjct:   180 STYESN 185


>ASPGD|ASPL0000078272 [details] [associations]
            symbol:AN4330 species:162425 "Emericella nidulans"
            [GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:BN001303 eggNOG:COG0724 HOGENOM:HOG000187841 KO:K14573
            OrthoDB:EOG4K6KCP EMBL:AACD01000075 OMA:MHALECL RefSeq:XP_661934.1
            ProteinModelPortal:Q5B550 STRING:Q5B550
            EnsemblFungi:CADANIAT00006131 GeneID:2872127 KEGG:ani:AN4330.2
            Uniprot:Q5B550
        Length = 724

 Score = 155 (59.6 bits), Expect = 4.3e-10, P = 4.3e-10
 Identities = 38/96 (39%), Positives = 55/96 (57%)

Query:    23 SSSLNPPQRPQA-EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGF 81
             SSS N  Q   A +P   LF+  L    T+E+L + FS    + HA +V   ++  SKG+
Sbjct:    21 SSSKNNVQEDGATQPRRELFIRSLPASATNESLAEHFSQSYVIKHAVVVVDPKTKQSKGY 80

Query:    82 GFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKPR 117
             GFV +A +E A  A+E ++G   +G  I VEYA+PR
Sbjct:    81 GFVTFADVEDAKAALEELNGSTFEGKKIKVEYAQPR 116


>DICTYBASE|DDB_G0267714 [details] [associations]
            symbol:sf3b4 "splicing factor 3B subunit 4"
            species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA;ISS]
            [GO:0005681 "spliceosomal complex" evidence=IEA;ISS] [GO:0006397
            "mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            dictyBase:DDB_G0267714 GenomeReviews:CM000150_GR GO:GO:0008380
            GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 EMBL:AAFI02000003
            GO:GO:0005681 GO:GO:0003723 HSSP:Q15427 eggNOG:NOG282907 KO:K12831
            RefSeq:XP_647248.1 ProteinModelPortal:Q55GD6 SMR:Q55GD6
            STRING:Q55GD6 EnsemblProtists:DDB0233172 GeneID:8616053
            KEGG:ddi:DDB_G0267714 OMA:ERNHEAC Uniprot:Q55GD6
        Length = 359

 Score = 150 (57.9 bits), Expect = 4.4e-10, P = 4.4e-10
 Identities = 31/87 (35%), Positives = 47/87 (54%)

Query:    31 RPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLE 90
             + + +   NLF+  L     +  L DTFS FG ++    V   E+G SKGF F+ + + E
Sbjct:    91 KDKVDIGANLFIGNLDADVDERILHDTFSRFGTIIFTPKVMRDENGVSKGFAFINFDSFE 150

Query:    91 AAGKAIEGMDGKFLDGWVIFVEYAKPR 117
             A+  AIE M+ +FL    I V YA+ +
Sbjct:   151 ASDAAIEAMNSQFLCNKPISVTYARKK 177


>TAIR|locus:2124261 [details] [associations]
            symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
            thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
            "translation initiation factor activity" evidence=ISS] [GO:0009651
            "response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
            evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
            "translational initiation" evidence=ISS] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
            GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
            EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
            SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
            EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
            UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
            STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
            EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
            TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
            ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
            Uniprot:P42731
        Length = 629

 Score = 154 (59.3 bits), Expect = 4.5e-10, P = 4.5e-10
 Identities = 36/92 (39%), Positives = 52/92 (56%)

Query:    39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
             N+F+  L +    + L DTFS+FG +V  K+     SG SKG+GFV+YA  E+A KAIE 
Sbjct:   125 NIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVD-SSGQSKGYGFVQYANEESAQKAIEK 183

Query:    99 MDGKFLDGWVIFVEYAKPRQPPTLPSQNNTNF 130
             ++G  L+   ++V     RQ     + N T F
Sbjct:   184 LNGMLLNDKQVYVGPFLRRQERD-STANKTKF 214

 Score = 144 (55.7 bits), Expect = 5.3e-09, P = 5.3e-09
 Identities = 29/74 (39%), Positives = 48/74 (64%)

Query:    38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
             TN++V  L++ TTD+ L++ F  +G++  A ++K  E G SKGFGFV +   + A +A+E
Sbjct:   215 TNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGE-GKSKGFGFVNFENADDAARAVE 273

Query:    98 GMDG-KFLDG-WVI 109
              ++G KF D  W +
Sbjct:   274 SLNGHKFDDKEWYV 287

 Score = 143 (55.4 bits), Expect = 6.8e-09, P = 6.8e-09
 Identities = 30/82 (36%), Positives = 51/82 (62%)

Query:    37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
             S+NL+V  L    +DE L++ FS FG V  +K+++   +G SKG GFV +AT E A +A+
Sbjct:   317 SSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRD-PNGTSKGSGFVAFATPEEATEAM 375

Query:    97 EGMDGKFLDGWVIFVEYAKPRQ 118
               + GK ++   ++V  A+ ++
Sbjct:   376 SQLSGKMIESKPLYVAIAQRKE 397


>UNIPROTKB|G4MY43 [details] [associations]
            symbol:MGG_01268 "Nuclear localization sequence binding
            protein" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:CM001232 KO:K11294 RefSeq:XP_003714181.1
            ProteinModelPortal:G4MY43 EnsemblFungi:MGG_01268T0 GeneID:2679652
            KEGG:mgr:MGG_01268 Uniprot:G4MY43
        Length = 486

 Score = 152 (58.6 bits), Expect = 4.8e-10, P = 4.8e-10
 Identities = 36/80 (45%), Positives = 47/80 (58%)

Query:    35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGK 94
             +PST LFV  LS    D  L + F   G V  A+++  RESG SKGFG+V +AT E A K
Sbjct:   237 KPST-LFVGNLSWNVDDAMLAEEFKFCGTVTSARVITDRESGRSKGFGYVDFATPEEAEK 295

Query:    95 AIEGMDGKFLDGWVIFVEYA 114
             A     G F+DG  I V+++
Sbjct:   296 AHGEKQGAFIDGREIKVDFS 315

 Score = 120 (47.3 bits), Expect = 1.4e-06, P = 1.4e-06
 Identities = 27/83 (32%), Positives = 46/83 (55%)

Query:    37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
             S  LFV  L     ++++   FS   EV   ++   +ESG  KGFG+V + ++E A  A 
Sbjct:   341 SDTLFVGNLPFDADEDSVGAFFSEVAEVKSLRLPTEQESGRRKGFGYVTFNSVEDAKSAF 400

Query:    97 EGMDGKFLDGWVIFVEYAKPRQP 119
             E ++G+ ++G    ++Y+ PR P
Sbjct:   401 EQLNGQSINGRNCRLDYSTPRPP 423


>UNIPROTKB|I3LQ36 [details] [associations]
            symbol:I3LQ36 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 EMBL:CU210877
            Ensembl:ENSSSCT00000005974 Uniprot:I3LQ36
        Length = 161

 Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
 Identities = 30/75 (40%), Positives = 45/75 (60%)

Query:    40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
             LFV GL+  T ++ L D FS+FG +    +VK  E+  S+GFGF+ +   E A  A+   
Sbjct:     8 LFVGGLNFNTYEQALEDHFSSFGPIFEVVVVKDWETRRSQGFGFITFTNPEHASNAMRAT 67

Query:   100 DGKFLDGWVIFVEYA 114
             +G+ LDG  I V++A
Sbjct:    68 NGESLDGRQIHVDHA 82


>ZFIN|ZDB-GENE-020419-22 [details] [associations]
            symbol:sf3b4 "splicing factor 3b, subunit 4"
            species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 ZFIN:ZDB-GENE-020419-22 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295 EMBL:AY099515
            IPI:IPI00495328 UniGene:Dr.1505 ProteinModelPortal:Q8JGT1
            SMR:Q8JGT1 STRING:Q8JGT1 InParanoid:Q8JGT1 ArrayExpress:Q8JGT1
            Uniprot:Q8JGT1
        Length = 400

 Score = 150 (57.9 bits), Expect = 5.5e-10, P = 5.5e-10
 Identities = 30/77 (38%), Positives = 49/77 (63%)

Query:    39 NLFVSGLSKRTTDETLRDTFSAFGEVVHA-KIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
             N+F+  L     ++ L DTFSAFG ++   KI++  ++G SKG+ F+ +A+ +A+  AIE
Sbjct:   101 NIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIE 160

Query:    98 GMDGKFLDGWVIFVEYA 114
              M+G++L    I V YA
Sbjct:   161 AMNGQYLCNRPITVSYA 177


>UNIPROTKB|Q5U259 [details] [associations]
            symbol:elavl1-b "ELAV-like protein 1-B" species:8355
            "Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
            evidence=IDA] [GO:0005938 "cell cortex" evidence=IDA] [GO:0007369
            "gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA binding"
            evidence=ISS] [GO:0008298 "intracellular mRNA localization"
            evidence=IMP] [GO:0030529 "ribonucleoprotein complex" evidence=IPI]
            [GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0051259 "protein
            oligomerization" evidence=ISS] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
            GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 KO:K13088
            TIGRFAMs:TIGR01661 EMBL:BC086269 RefSeq:NP_001088628.1
            UniGene:Xl.22886 ProteinModelPortal:Q5U259 SMR:Q5U259 PRIDE:Q5U259
            GeneID:495680 KEGG:xla:495680 CTD:495680 Xenbase:XB-GENE-865489
            Uniprot:Q5U259
        Length = 326

 Score = 148 (57.2 bits), Expect = 5.7e-10, P = 5.7e-10
 Identities = 31/79 (39%), Positives = 48/79 (60%)

Query:    38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
             TNL V+ L +  T + LR  FS+ GEV  AK+++ + +G+S G+GFV Y   + A +AI 
Sbjct:    20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAIN 79

Query:    98 GMDGKFLDGWVIFVEYAKP 116
              ++G  L    I V +A+P
Sbjct:    80 TLNGLRLQSKTIKVSFARP 98

 Score = 114 (45.2 bits), Expect = 3.1e-06, P = 3.1e-06
 Identities = 21/73 (28%), Positives = 42/73 (57%)

Query:    31 RPQAEP--STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYAT 88
             RP +E     NL++SGL +  T + + D F  FG +++++++  + +G S+G  F+++  
Sbjct:    97 RPSSETIKDANLYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDK 156

Query:    89 LEAAGKAIEGMDG 101
                A +AI   +G
Sbjct:   157 RSEAEEAIASFNG 169


>UNIPROTKB|H9L019 [details] [associations]
            symbol:SF3B4 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0005689 "U12-type
            spliceosomal complex" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00690000101901 KO:K12831 OMA:VSETLLW CTD:10262
            EMBL:AADN02044320 RefSeq:XP_423721.2 UniGene:Gga.51399
            ProteinModelPortal:H9L019 Ensembl:ENSGALT00000021786 GeneID:426042
            KEGG:gga:426042 Uniprot:H9L019
        Length = 418

 Score = 150 (57.9 bits), Expect = 6.0e-10, P = 6.0e-10
 Identities = 30/77 (38%), Positives = 49/77 (63%)

Query:    39 NLFVSGLSKRTTDETLRDTFSAFGEVVHA-KIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
             N+F+  L     ++ L DTFSAFG ++   KI++  ++G SKG+ F+ +A+ +A+  AIE
Sbjct:   101 NIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIE 160

Query:    98 GMDGKFLDGWVIFVEYA 114
              M+G++L    I V YA
Sbjct:   161 AMNGQYLCNRPITVSYA 177


>UNIPROTKB|F1MWR2 [details] [associations]
            symbol:SF3B4 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00690000101901 KO:K12831 OMA:VSETLLW CTD:10262
            EMBL:DAAA02007272 IPI:IPI00717302 RefSeq:NP_001192513.1
            UniGene:Bt.3914 ProteinModelPortal:F1MWR2
            Ensembl:ENSBTAT00000016577 GeneID:506123 KEGG:bta:506123
            NextBio:20867458 ArrayExpress:F1MWR2 Uniprot:F1MWR2
        Length = 424

 Score = 150 (57.9 bits), Expect = 6.2e-10, P = 6.2e-10
 Identities = 30/77 (38%), Positives = 49/77 (63%)

Query:    39 NLFVSGLSKRTTDETLRDTFSAFGEVVHA-KIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
             N+F+  L     ++ L DTFSAFG ++   KI++  ++G SKG+ F+ +A+ +A+  AIE
Sbjct:   101 NIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIE 160

Query:    98 GMDGKFLDGWVIFVEYA 114
              M+G++L    I V YA
Sbjct:   161 AMNGQYLCNRPITVSYA 177


>UNIPROTKB|E2R5T2 [details] [associations]
            symbol:SF3B4 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005689 "U12-type spliceosomal complex"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00690000101901 GO:GO:0005689 KO:K12831 OMA:VSETLLW
            CTD:10262 EMBL:AAEX03011046 EMBL:AAEX03011045 RefSeq:XP_540295.3
            ProteinModelPortal:E2R5T2 Ensembl:ENSCAFT00000018450 GeneID:483177
            KEGG:cfa:483177 NextBio:20857615 Uniprot:E2R5T2
        Length = 424

 Score = 150 (57.9 bits), Expect = 6.2e-10, P = 6.2e-10
 Identities = 30/77 (38%), Positives = 49/77 (63%)

Query:    39 NLFVSGLSKRTTDETLRDTFSAFGEVVHA-KIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
             N+F+  L     ++ L DTFSAFG ++   KI++  ++G SKG+ F+ +A+ +A+  AIE
Sbjct:   101 NIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIE 160

Query:    98 GMDGKFLDGWVIFVEYA 114
              M+G++L    I V YA
Sbjct:   161 AMNGQYLCNRPITVSYA 177


>UNIPROTKB|Q15427 [details] [associations]
            symbol:SF3B4 "Splicing factor 3B subunit 4" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0005689 "U12-type
            spliceosomal complex" evidence=IDA] [GO:0006397 "mRNA processing"
            evidence=TAS] [GO:0000375 "RNA splicing, via transesterification
            reactions" evidence=TAS] [GO:0000398 "mRNA splicing, via
            spliceosome" evidence=IC;TAS] [GO:0005681 "spliceosomal complex"
            evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380
            "RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
            evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
            Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005654
            GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723
            EMBL:CH471121 GO:GO:0000398 EMBL:AL591493 eggNOG:COG0724
            HOVERGEN:HBG002295 GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831
            EMBL:AL590487 OMA:VSETLLW EMBL:L35013 EMBL:BC004273 EMBL:BC013886
            EMBL:BC090883 IPI:IPI00017339 PIR:A54964 RefSeq:NP_005841.1
            UniGene:Hs.516160 PDB:1X5T PDB:1X5U PDBsum:1X5T PDBsum:1X5U
            ProteinModelPortal:Q15427 SMR:Q15427 IntAct:Q15427
            MINT:MINT-1032702 STRING:Q15427 PhosphoSite:Q15427 DMDM:2500587
            PaxDb:Q15427 PeptideAtlas:Q15427 PRIDE:Q15427 DNASU:10262
            Ensembl:ENST00000271628 Ensembl:ENST00000582851 GeneID:10262
            KEGG:hsa:10262 UCSC:uc001etk.2 CTD:10262 GeneCards:GC01M149895
            HGNC:HGNC:10771 HPA:HPA028578 MIM:154400 MIM:605593
            neXtProt:NX_Q15427 Orphanet:245 PharmGKB:PA35689 InParanoid:Q15427
            OrthoDB:EOG4M65JJ PhylomeDB:Q15427 EvolutionaryTrace:Q15427
            GenomeRNAi:10262 NextBio:38880 ArrayExpress:Q15427 Bgee:Q15427
            CleanEx:HS_SF3B4 Genevestigator:Q15427 GermOnline:ENSG00000143368
            Uniprot:Q15427
        Length = 424

 Score = 150 (57.9 bits), Expect = 6.2e-10, P = 6.2e-10
 Identities = 30/77 (38%), Positives = 49/77 (63%)

Query:    39 NLFVSGLSKRTTDETLRDTFSAFGEVVHA-KIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
             N+F+  L     ++ L DTFSAFG ++   KI++  ++G SKG+ F+ +A+ +A+  AIE
Sbjct:   101 NIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIE 160

Query:    98 GMDGKFLDGWVIFVEYA 114
              M+G++L    I V YA
Sbjct:   161 AMNGQYLCNRPITVSYA 177


>UNIPROTKB|F1SDG0 [details] [associations]
            symbol:SF3B4 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005689 "U12-type spliceosomal complex" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00690000101901 GO:GO:0005689 KO:K12831 OMA:VSETLLW
            CTD:10262 EMBL:CU468464 RefSeq:XP_001926524.1 UniGene:Ssc.3222
            ProteinModelPortal:F1SDG0 Ensembl:ENSSSCT00000007303
            GeneID:100157814 KEGG:ssc:100157814 Uniprot:F1SDG0
        Length = 424

 Score = 150 (57.9 bits), Expect = 6.2e-10, P = 6.2e-10
 Identities = 30/77 (38%), Positives = 49/77 (63%)

Query:    39 NLFVSGLSKRTTDETLRDTFSAFGEVVHA-KIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
             N+F+  L     ++ L DTFSAFG ++   KI++  ++G SKG+ F+ +A+ +A+  AIE
Sbjct:   101 NIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIE 160

Query:    98 GMDGKFLDGWVIFVEYA 114
              M+G++L    I V YA
Sbjct:   161 AMNGQYLCNRPITVSYA 177


>MGI|MGI:109580 [details] [associations]
            symbol:Sf3b4 "splicing factor 3b, subunit 4" species:10090
            "Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
            complex" evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
            evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            MGI:MGI:109580 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
            GeneTree:ENSGT00690000101901 HSSP:Q15427 HOVERGEN:HBG002295
            GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831 CTD:10262
            OrthoDB:EOG4M65JJ EMBL:AK047751 EMBL:AK135543 EMBL:BC024418
            EMBL:BC026567 EMBL:BC085273 IPI:IPI00154082 RefSeq:NP_694693.1
            UniGene:Mm.219671 ProteinModelPortal:Q8QZY9 SMR:Q8QZY9
            IntAct:Q8QZY9 STRING:Q8QZY9 PhosphoSite:Q8QZY9 PaxDb:Q8QZY9
            PRIDE:Q8QZY9 Ensembl:ENSMUST00000076372 GeneID:107701
            KEGG:mmu:107701 UCSC:uc008qme.1 InParanoid:Q8QZY9 OMA:FASISHH
            NextBio:359278 Bgee:Q8QZY9 Genevestigator:Q8QZY9 Uniprot:Q8QZY9
        Length = 424

 Score = 150 (57.9 bits), Expect = 6.2e-10, P = 6.2e-10
 Identities = 30/77 (38%), Positives = 49/77 (63%)

Query:    39 NLFVSGLSKRTTDETLRDTFSAFGEVVHA-KIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
             N+F+  L     ++ L DTFSAFG ++   KI++  ++G SKG+ F+ +A+ +A+  AIE
Sbjct:   101 NIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIE 160

Query:    98 GMDGKFLDGWVIFVEYA 114
              M+G++L    I V YA
Sbjct:   161 AMNGQYLCNRPITVSYA 177


>RGD|1309667 [details] [associations]
            symbol:Sf3b4 "splicing factor 3b, subunit 4" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0005681 "spliceosomal
            complex" evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
            evidence=IEA;ISO] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:1309667 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
            GeneTree:ENSGT00690000101901 HSSP:Q15427 HOVERGEN:HBG002295
            GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831 OMA:VSETLLW CTD:10262
            OrthoDB:EOG4M65JJ EMBL:BC078997 IPI:IPI00371860
            RefSeq:NP_001011951.1 UniGene:Rn.116275 ProteinModelPortal:Q6AYL5
            SMR:Q6AYL5 STRING:Q6AYL5 PRIDE:Q6AYL5 Ensembl:ENSRNOT00000028758
            GeneID:295270 KEGG:rno:295270 UCSC:RGD:1309667 InParanoid:Q6AYL5
            NextBio:639268 Genevestigator:Q6AYL5 Uniprot:Q6AYL5
        Length = 424

 Score = 150 (57.9 bits), Expect = 6.2e-10, P = 6.2e-10
 Identities = 30/77 (38%), Positives = 49/77 (63%)

Query:    39 NLFVSGLSKRTTDETLRDTFSAFGEVVHA-KIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
             N+F+  L     ++ L DTFSAFG ++   KI++  ++G SKG+ F+ +A+ +A+  AIE
Sbjct:   101 NIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIE 160

Query:    98 GMDGKFLDGWVIFVEYA 114
              M+G++L    I V YA
Sbjct:   161 AMNGQYLCNRPITVSYA 177


>GENEDB_PFALCIPARUM|PFL1170w [details] [associations]
            symbol:PFL1170w "polyadenylate-binding protein,
            putative" species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA
            binding" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
            [GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0005575
            "cellular_component" evidence=ND] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
            ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
            MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
            KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
            ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
        Length = 875

 Score = 136 (52.9 bits), Expect = 6.5e-10, Sum P(2) = 6.5e-10
 Identities = 35/108 (32%), Positives = 56/108 (51%)

Query:    11 RGLRRLFSTSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIV 70
             R  R     + F + LN   + + +   NL++  L     D  LR+ F  FG +  AK++
Sbjct:   425 RARRHAILKAKFDN-LNVENKNKHQ-GVNLYIKNLDDGIDDIMLRELFEPFGTITSAKVM 482

Query:    71 KHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKPRQ 118
             +  E   SKGFGFV +A+ E A KA+  M  K ++G  ++V  A+ R+
Sbjct:   483 RD-EKEQSKGFGFVCFASQEEANKAVTEMHLKIINGKPLYVGLAEKRE 529

 Score = 127 (49.8 bits), Expect = 5.4e-07, P = 5.4e-07
 Identities = 34/93 (36%), Positives = 50/93 (53%)

Query:    39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
             N+FV  L K   ++ L DTFS FG ++  K+    E G SK +GFV Y   E+A +AIE 
Sbjct:   105 NIFVKNLDKSIDNKALFDTFSMFGNILSCKVATD-EFGKSKSYGFVHYEDEESAKEAIEK 163

Query:    99 MDGKFLDGWVIFV-EYAKPRQPPTLPSQNNTNF 130
             ++G  L    ++V  + K  +  T    N+T F
Sbjct:   164 VNGVQLGSKNVYVGPFIKKSERAT----NDTKF 192

 Score = 43 (20.2 bits), Expect = 6.5e-10, Sum P(2) = 6.5e-10
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query:   111 VEYAKPRQPPTLPSQNNTNFQYGR 134
             ++YA P+ P    SQN  +  YGR
Sbjct:   556 MQYASPQSPQLQFSQNTLS--YGR 577


>UNIPROTKB|Q8I5H4 [details] [associations]
            symbol:PFL1170w "Polyadenylate-binding protein, putative"
            species:36329 "Plasmodium falciparum 3D7" [GO:0003729 "mRNA
            binding" evidence=ISS] [GO:0005575 "cellular_component"
            evidence=ND] [GO:0006396 "RNA processing" evidence=ISS] [GO:0008143
            "poly(A) RNA binding" evidence=ISS] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
            ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
            MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
            KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
            ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
        Length = 875

 Score = 136 (52.9 bits), Expect = 6.5e-10, Sum P(2) = 6.5e-10
 Identities = 35/108 (32%), Positives = 56/108 (51%)

Query:    11 RGLRRLFSTSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIV 70
             R  R     + F + LN   + + +   NL++  L     D  LR+ F  FG +  AK++
Sbjct:   425 RARRHAILKAKFDN-LNVENKNKHQ-GVNLYIKNLDDGIDDIMLRELFEPFGTITSAKVM 482

Query:    71 KHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKPRQ 118
             +  E   SKGFGFV +A+ E A KA+  M  K ++G  ++V  A+ R+
Sbjct:   483 RD-EKEQSKGFGFVCFASQEEANKAVTEMHLKIINGKPLYVGLAEKRE 529

 Score = 127 (49.8 bits), Expect = 5.4e-07, P = 5.4e-07
 Identities = 34/93 (36%), Positives = 50/93 (53%)

Query:    39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
             N+FV  L K   ++ L DTFS FG ++  K+    E G SK +GFV Y   E+A +AIE 
Sbjct:   105 NIFVKNLDKSIDNKALFDTFSMFGNILSCKVATD-EFGKSKSYGFVHYEDEESAKEAIEK 163

Query:    99 MDGKFLDGWVIFV-EYAKPRQPPTLPSQNNTNF 130
             ++G  L    ++V  + K  +  T    N+T F
Sbjct:   164 VNGVQLGSKNVYVGPFIKKSERAT----NDTKF 192

 Score = 43 (20.2 bits), Expect = 6.5e-10, Sum P(2) = 6.5e-10
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query:   111 VEYAKPRQPPTLPSQNNTNFQYGR 134
             ++YA P+ P    SQN  +  YGR
Sbjct:   556 MQYASPQSPQLQFSQNTLS--YGR 577


>UNIPROTKB|E1C875 [details] [associations]
            symbol:TRA2A "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 EMBL:AADN02000941 EMBL:AADN02000942
            IPI:IPI00681985 ProteinModelPortal:E1C875
            Ensembl:ENSGALT00000031186 Uniprot:E1C875
        Length = 182

 Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 34/93 (36%), Positives = 53/93 (56%)

Query:    31 RPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLE 90
             R   +P+T L V GLS  TT+  LR+ FS +G +    +V  + +G S+GF FV +  ++
Sbjct:    11 RANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLTGVNVVYDQRTGRSRGFAFVYFERID 70

Query:    91 AAGKAIEGMDGKFLDGWVIFVEYA--KPRQPPT 121
              + +A+E  +G  LDG  I V+Y+  K    PT
Sbjct:    71 DSKEAMEHANGMELDGRRIRVDYSITKRAHTPT 103


>UNIPROTKB|H9KZV5 [details] [associations]
            symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730
            "mRNA 3'-UTR binding" evidence=IEA] [GO:0009411 "response to UV"
            evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
            evidence=IEA] [GO:0030371 "translation repressor activity"
            evidence=IEA] [GO:0034063 "stress granule assembly" evidence=IEA]
            [GO:0045727 "positive regulation of translation" evidence=IEA]
            [GO:0048255 "mRNA stabilization" evidence=IEA] [GO:0070181 "SSU
            rRNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 OMA:ENRSRGY
            GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
            Ensembl:ENSGALT00000019966 Uniprot:H9KZV5
        Length = 190

 Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 30/75 (40%), Positives = 46/75 (61%)

Query:    40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
             L V GLS  T +++L   FS +G++    +VK RE+  S+GFGFV +  ++ A  A+  M
Sbjct:     8 LLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67

Query:   100 DGKFLDGWVIFVEYA 114
             +GK +DG  I V+ A
Sbjct:    68 NGKSVDGRQIRVDQA 82


>UNIPROTKB|H9L0U4 [details] [associations]
            symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
            Ensembl:ENSGALT00000029134 Uniprot:H9L0U4
        Length = 167

 Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 30/75 (40%), Positives = 46/75 (61%)

Query:    40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
             L V GLS  T +++L   FS +G++    +VK RE+  S+GFGFV +  ++ A  A+  M
Sbjct:     8 LLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67

Query:   100 DGKFLDGWVIFVEYA 114
             +GK +DG  I V+ A
Sbjct:    68 NGKSVDGRQIRVDQA 82


>UNIPROTKB|H9L3B3 [details] [associations]
            symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
            Ensembl:ENSGALT00000036191 Uniprot:H9L3B3
        Length = 172

 Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 30/75 (40%), Positives = 46/75 (61%)

Query:    40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
             L V GLS  T +++L   FS +G++    +VK RE+  S+GFGFV +  ++ A  A+  M
Sbjct:     8 LLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67

Query:   100 DGKFLDGWVIFVEYA 114
             +GK +DG  I V+ A
Sbjct:    68 NGKSVDGRQIRVDQA 82


>UNIPROTKB|K7GNR2 [details] [associations]
            symbol:RBMX "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
            Ensembl:ENSSSCT00000034855 Uniprot:K7GNR2
        Length = 129

 Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 32/85 (37%), Positives = 47/85 (55%)

Query:    33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
             +A+    LF+ GL+  T ++ L   F  +G +V   ++K RE+  S+GF FV + +   A
Sbjct:     3 EADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADA 62

Query:    93 GKAIEGMDGKFLDGWVIFVEYA-KP 116
               A   M+GK LDG  I VE A KP
Sbjct:    63 KDAARDMNGKSLDGKAIKVEQATKP 87


>UNIPROTKB|Q9DED4 [details] [associations]
            symbol:cirbp-b "Cold-inducible RNA-binding protein B"
            species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
            evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007369
            "gastrulation" evidence=IMP] [GO:0009409 "response to cold"
            evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
            [GO:0016477 "cell migration" evidence=IMP] [GO:0019899 "enzyme
            binding" evidence=IPI] [GO:0022008 "neurogenesis" evidence=IMP]
            [GO:0045727 "positive regulation of translation" evidence=ISS]
            [GO:0048255 "mRNA stabilization" evidence=IGI;IMP] [GO:0048793
            "pronephros development" evidence=ISS] [GO:0060212 "negative
            regulation of nuclear-transcribed mRNA poly(A) tail shortening"
            evidence=IMP] [GO:0005840 "ribosome" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
            GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
            Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
            GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480 GO:GO:0060212
            EMBL:AB044535 EMBL:BC054250 RefSeq:NP_001079794.1 UniGene:Xl.8151
            HSSP:P09651 ProteinModelPortal:Q9DED4 SMR:Q9DED4 MINT:MINT-274223
            PRIDE:Q9DED4 GeneID:379484 KEGG:xla:379484 CTD:379484
            Xenbase:XB-GENE-492785 KO:K13195 Uniprot:Q9DED4
        Length = 166

 Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 30/75 (40%), Positives = 46/75 (61%)

Query:    40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
             LF+ GL+  T +E+L   FS +G++    +VK RE+  S+GFGFV +   + A  A+  M
Sbjct:     7 LFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMAM 66

Query:   100 DGKFLDGWVIFVEYA 114
             +GK +DG  I V+ A
Sbjct:    67 NGKAVDGRQIRVDQA 81


>TAIR|locus:2033888 [details] [associations]
            symbol:Y14 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IEA]
            [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0005654 "nucleoplasm"
            evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0016604
            "nuclear body" evidence=IDA] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0035145 "exon-exon junction complex"
            evidence=IPI] [GO:0010628 "positive regulation of gene expression"
            evidence=IEP] InterPro:IPR000504 InterPro:IPR008111
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102
            SMART:SM00360 EMBL:CP002684 GO:GO:0005737 GO:GO:0005730
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396
            GO:GO:0010628 GO:GO:0016604 GO:GO:0035145 KO:K12876 IPI:IPI00540540
            RefSeq:NP_564591.1 UniGene:At.18276 ProteinModelPortal:F4I9J7
            SMR:F4I9J7 PRIDE:F4I9J7 EnsemblPlants:AT1G51510.1 GeneID:841576
            KEGG:ath:AT1G51510 OMA:WIILVTG Uniprot:F4I9J7
        Length = 202

 Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 41/124 (33%), Positives = 60/124 (48%)

Query:    14 RRLFSTSPFSSSLNPPQRPQAEPSTN---LFVSGLSKRTTDETLRDTFSAFGEVVHAKIV 70
             RRL S+  F S L    RP  + S     + VSG+ + T +E + + F  FGE+ +  + 
Sbjct:    70 RRL-SSRDFES-LGSDGRPGPQRSVEGWIILVSGVHEETQEEDITNAFGDFGEIKNLNLN 127

Query:    71 KHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKPRQPPTLPSQNNTNF 130
               R SGY KG+  ++Y   E A  AI  M+G  L    + V++A    P    S    N 
Sbjct:   128 LDRRSGYVKGYALIEYEKKEEAQSAISAMNGAELLTQNVSVDWAFSSGPSGGESYRRKNS 187

Query:   131 QYGR 134
             +YGR
Sbjct:   188 RYGR 191


>FB|FBgn0010263 [details] [associations]
            symbol:Rbp9 "RNA-binding protein 9" species:7227 "Drosophila
            melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0007293
            "germarium-derived egg chamber formation" evidence=TAS] [GO:0005634
            "nucleus" evidence=TAS] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0048477
            "oogenesis" evidence=IMP] [GO:0036093 "germ cell proliferation"
            evidence=IMP] [GO:0060856 "establishment of blood-brain barrier"
            evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0007293 TIGRFAMs:TIGR01661
            HSSP:P26378 GO:GO:0060856 FlyBase:FBgn0010263 EMBL:S55886
            ProteinModelPortal:Q26293 SMR:Q26293 STRING:Q26293 PRIDE:Q26293
            InParanoid:Q26293 ArrayExpress:Q26293 Bgee:Q26293 Uniprot:Q26293
        Length = 444

 Score = 150 (57.9 bits), Expect = 6.8e-10, P = 6.8e-10
 Identities = 32/94 (34%), Positives = 52/94 (55%)

Query:    23 SSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFG 82
             +++ N     + +P TNL V+ L +  + + +R  F +FGEV   K+++ + +G S G+G
Sbjct:    95 NATANNNNNNEPDPKTNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYG 154

Query:    83 FVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKP 116
             FV Y   E A KAI  ++G  L    I V  A+P
Sbjct:   155 FVNYVKQEDAEKAINALNGLRLQNKTIKVSIARP 188

 Score = 111 (44.1 bits), Expect = 1.1e-05, P = 1.1e-05
 Identities = 33/103 (32%), Positives = 52/103 (50%)

Query:     6 AVAAPRGLRRLFSTSPFSSSLNPPQRPQAEP--STNLFVSGLSKRTTDETLRDTFSAFGE 63
             A+ A  GLR    T   S +     RP +E     NL+VSGL K  T   L   FS +G+
Sbjct:   167 AINALNGLRLQNKTIKVSIA-----RPSSESIKGANLYVSGLPKNMTQSDLESLFSPYGK 221

Query:    64 VVHAKIV-----KHRESGYSKGFGFVKYATLEAAGKAIEGMDG 101
             ++ ++I+         +G SKG GF+++     A +AI+ ++G
Sbjct:   222 IITSRILCDNITGEHAAGLSKGVGFIRFDQRFEADRAIKELNG 264

 Score = 107 (42.7 bits), Expect = 3.0e-05, P = 3.0e-05
 Identities = 26/82 (31%), Positives = 39/82 (47%)

Query:    40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
             +FV  L+  T +  L   F  FG V   K+++  +S   KGFGFV     E A  AI+ +
Sbjct:   363 IFVYNLAPDTEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQSL 422

Query:   100 DGKFLDGWVIFVEYAKPRQPPT 121
             +G  L   V+ V +   +   T
Sbjct:   423 NGYTLGNRVLQVSFKTNKNKQT 444


>UNIPROTKB|Q9DDU8 [details] [associations]
            symbol:TRA2B "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
            "regulation of alternative mRNA splicing, via spliceosome"
            evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0048026 "positive regulation of mRNA
            splicing, via spliceosome" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
            GO:GO:0000398 HSSP:Q9V535 GO:GO:0048026 GO:GO:0000381
            HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309 KO:K12897
            OrthoDB:EOG4BVRW2 CTD:6434 eggNOG:NOG297815 OMA:YDDREYY
            EMBL:AADN02024287 EMBL:AF282244 IPI:IPI00571265 RefSeq:NP_990009.1
            UniGene:Gga.4158 SMR:Q9DDU8 Ensembl:ENSGALT00000010555
            GeneID:395403 KEGG:gga:395403 InParanoid:Q9DDU8 NextBio:20815487
            Uniprot:Q9DDU8
        Length = 289

 Score = 146 (56.5 bits), Expect = 6.8e-10, P = 6.8e-10
 Identities = 39/109 (35%), Positives = 58/109 (53%)

Query:    14 RRLFSTSPFSSSLNP-PQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKH 72
             R   S SP S+       R   +P+  L V GLS  TT+  LR+ FS +G +    IV  
Sbjct:    93 RHSHSHSPMSTRRRHIGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYD 152

Query:    73 RESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKPRQPPT 121
             ++S  S+GF FV +  +E A +A E  +G  LDG  I V+++  ++P T
Sbjct:   153 QQSRRSRGFAFVYFENVEDAKEAKERANGMELDGRRIRVDFSITKRPHT 201


>UNIPROTKB|Q6DEY7 [details] [associations]
            symbol:epabp "Embryonic polyadenylate-binding protein"
            species:8364 "Xenopus (Silurana) tropicalis" [GO:0005737
            "cytoplasm" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
            evidence=ISS] [GO:0031370 "eukaryotic initiation factor 4G binding"
            evidence=ISS] [GO:0043009 "chordate embryonic development"
            evidence=ISS] [GO:0043621 "protein self-association" evidence=ISS]
            [GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0060212
            "negative regulation of nuclear-transcribed mRNA poly(A) tail
            shortening" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0043009
            eggNOG:COG0724 GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295
            KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            GO:GO:0031370 EMBL:BC076956 RefSeq:NP_001005062.1 UniGene:Str.8393
            ProteinModelPortal:Q6DEY7 SMR:Q6DEY7 STRING:Q6DEY7 PRIDE:Q6DEY7
            GeneID:448615 KEGG:xtr:448615 CTD:80336 Xenbase:XB-GENE-5742459
            HOGENOM:HOG000217922 InParanoid:Q6DEY7 OrthoDB:EOG4K6G3V
            Uniprot:Q6DEY7
        Length = 629

 Score = 152 (58.6 bits), Expect = 7.3e-10, P = 7.3e-10
 Identities = 31/80 (38%), Positives = 50/80 (62%)

Query:    38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
             TN+++    +   D+ LR+ FSAFG  +  K++   ++G S+GFGFV Y   E A KA+ 
Sbjct:   191 TNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD-DTGRSRGFGFVNYGNHEEAQKAVS 249

Query:    98 GMDGKFLDGWVIFVEYAKPR 117
              M+GK ++G +I+V  A+ R
Sbjct:   250 EMNGKEVNGRMIYVGRAQKR 269

 Score = 151 (58.2 bits), Expect = 9.4e-10, P = 9.4e-10
 Identities = 33/80 (41%), Positives = 51/80 (63%)

Query:    39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
             N+F+  L +   ++ L DTFSAFG ++  K+V   E G S+G+GFV + T EAA +AI+ 
Sbjct:   100 NVFIKNLDESIDNKALYDTFSAFGNILSCKVVCD-EHG-SRGYGFVHFETQEAANRAIQT 157

Query:    99 MDGKFLDGWVIFVEYAKPRQ 118
             M+G  L+   +FV + K R+
Sbjct:   158 MNGMLLNDRKVFVGHFKSRR 177

 Score = 136 (52.9 bits), Expect = 3.8e-08, P = 3.8e-08
 Identities = 29/80 (36%), Positives = 48/80 (60%)

Query:    39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
             NL+V  L     D+ LR  FS +G +  AK++   E G+SKGFGFV +++ E A KA+  
Sbjct:   295 NLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMT--EGGHSKGFGFVCFSSPEEATKAVTE 352

Query:    99 MDGKFLDGWVIFVEYAKPRQ 118
             M+G+ +    ++V  A+ ++
Sbjct:   353 MNGRIVSTKPLYVALAQRKE 372


>UNIPROTKB|Q1LZH0 [details] [associations]
            symbol:SNRNP35 "U11/U12 small nuclear ribonucleoprotein 35
            kDa protein" species:9913 "Bos taurus" [GO:0005689 "U12-type
            spliceosomal complex" evidence=IEA] [GO:0008380 "RNA splicing"
            evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
            GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
            eggNOG:COG0724 GO:GO:0005689 GeneTree:ENSGT00530000063750
            EMBL:BC116002 IPI:IPI00730647 RefSeq:NP_001069024.1 UniGene:Bt.5294
            ProteinModelPortal:Q1LZH0 STRING:Q1LZH0 PRIDE:Q1LZH0
            Ensembl:ENSBTAT00000010602 GeneID:512142 KEGG:bta:512142 CTD:11066
            HOGENOM:HOG000006374 HOVERGEN:HBG104583 InParanoid:Q1LZH0 KO:K13155
            OMA:QHEVFVD OrthoDB:EOG4MSD0C NextBio:20870261 Uniprot:Q1LZH0
        Length = 245

 Score = 143 (55.4 bits), Expect = 7.9e-10, P = 7.9e-10
 Identities = 29/90 (32%), Positives = 51/90 (56%)

Query:    28 PPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYA 87
             P +    +P   LFV+ L+ +T +E L++ FS +G++   ++V+   +G+SKG+ F++Y 
Sbjct:    41 PNKGVTGDPLLTLFVARLNLQTKEEKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYK 100

Query:    88 TLEAAGKAIEGMDGKFLDGWVIFVEYAKPR 117
                +  KA    DG  +D   IFV+Y   R
Sbjct:   101 DERSLLKAYRDADGLVIDQHEIFVDYELER 130


>RGD|1305742 [details] [associations]
            symbol:Tia1 "TIA1 cytotoxic granule-associated RNA binding
            protein" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO]
            [GO:0005737 "cytoplasm" evidence=ISO] [GO:0010494 "cytoplasmic
            stress granule" evidence=IEA;ISO] [GO:0017091 "AU-rich element
            binding" evidence=IEA;ISO] [GO:0017148 "negative regulation of
            translation" evidence=IEA;ISO] [GO:0042036 "negative regulation of
            cytokine biosynthetic process" evidence=IEA;ISO] [GO:0048024
            "regulation of mRNA splicing, via spliceosome" evidence=IEA;ISO]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:CH473957 eggNOG:COG0724
            GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
            CTD:7072 HOVERGEN:HBG105006 EMBL:BC087064 IPI:IPI00563419
            RefSeq:NP_001012096.1 UniGene:Rn.198158 SMR:Q5PQR7 STRING:Q5PQR7
            Ensembl:ENSRNOT00000023103 GeneID:312510 KEGG:rno:312510
            UCSC:RGD:1305742 NextBio:664964 Genevestigator:Q5PQR7
            Uniprot:Q5PQR7
        Length = 375

 Score = 148 (57.2 bits), Expect = 8.0e-10, P = 8.0e-10
 Identities = 40/126 (31%), Positives = 63/126 (50%)

Query:     5 AAVAAPRGLRRLFSTSPFSSSLNPP-QRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGE 63
             AA+AA  G + +      + +  P  Q+       ++FV  LS   T E ++  F+ FG 
Sbjct:    61 AALAAMNGRKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGR 120

Query:    64 VVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKPRQPPTLP 123
             +  A++VK   +G SKG+GFV +     A  AI+ M G++L G  I   +A  R+PP   
Sbjct:   121 ISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT-RKPPAPK 179

Query:   124 SQNNTN 129
             S   +N
Sbjct:   180 STYESN 185

 Score = 109 (43.4 bits), Expect = 1.4e-05, P = 1.4e-05
 Identities = 24/101 (23%), Positives = 50/101 (49%)

Query:    33 QAEPST-NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEA 91
             Q+ P    ++  G++   T++ +R TFS FG+++  ++         KG+ F+++++ E+
Sbjct:   197 QSSPGNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFP------DKGYSFIRFSSHES 250

Query:    92 AGKAIEGMDGKFLDGWVIFVEYAKPRQPPTLPSQNNTNFQY 132
             A  AI  ++G  ++G V+   + K       P Q      Y
Sbjct:   251 AAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQQQNQIGY 291


>UNIPROTKB|Q16560 [details] [associations]
            symbol:SNRNP35 "U11/U12 small nuclear ribonucleoprotein 35
            kDa protein" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005689 "U12-type spliceosomal complex"
            evidence=IDA] [GO:0008380 "RNA splicing" evidence=IC]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 EMBL:CH471054 GO:GO:0003723 HSSP:Q9V535
            eggNOG:COG0724 GO:GO:0005689 CTD:11066 HOGENOM:HOG000006374
            HOVERGEN:HBG104583 KO:K13155 OMA:QHEVFVD OrthoDB:EOG4MSD0C
            EMBL:U44798 EMBL:U44799 EMBL:AK290127 EMBL:BC009622 EMBL:BC047678
            EMBL:BC054034 EMBL:BC093671 EMBL:BC111955 EMBL:BK005197
            IPI:IPI00007576 IPI:IPI00377030 PIR:G02371 RefSeq:NP_073208.1
            RefSeq:NP_851030.1 UniGene:Hs.632738 ProteinModelPortal:Q16560
            SMR:Q16560 STRING:Q16560 PhosphoSite:Q16560 DMDM:74754517
            PRIDE:Q16560 DNASU:11066 Ensembl:ENST00000350887
            Ensembl:ENST00000412157 Ensembl:ENST00000526639 GeneID:11066
            KEGG:hsa:11066 UCSC:uc001ufb.1 UCSC:uc021rfv.1
            GeneCards:GC12P123891 HGNC:HGNC:30852 neXtProt:NX_Q16560
            PharmGKB:PA164726115 InParanoid:Q16560 ChiTaRS:SNRNP35
            GenomeRNAi:11066 NextBio:42065 Bgee:Q16560 CleanEx:HS_SNRNP35
            Genevestigator:Q16560 Uniprot:Q16560
        Length = 246

 Score = 143 (55.4 bits), Expect = 8.1e-10, P = 8.1e-10
 Identities = 28/83 (33%), Positives = 49/83 (59%)

Query:    35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGK 94
             +P   LFV+ L+ +T ++ L++ FS +G++   ++V+   +G+SKG+ F++Y    A  K
Sbjct:    48 DPLLTLFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIK 107

Query:    95 AIEGMDGKFLDGWVIFVEYAKPR 117
             A    DG  +D   IFV+Y   R
Sbjct:   108 AYRDADGLVIDQHEIFVDYELER 130


>UNIPROTKB|I3LN96 [details] [associations]
            symbol:SNRNP35 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005689 "U12-type spliceosomal complex" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005689
            GeneTree:ENSGT00530000063750 KO:K13155 OMA:QHEVFVD EMBL:CU468910
            RefSeq:XP_003359137.1 Ensembl:ENSSSCT00000023937 GeneID:100626152
            KEGG:ssc:100626152 Uniprot:I3LN96
        Length = 246

 Score = 143 (55.4 bits), Expect = 8.1e-10, P = 8.1e-10
 Identities = 29/90 (32%), Positives = 51/90 (56%)

Query:    28 PPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYA 87
             P +    +P   LFV+ L+ +T +E L++ FS +G++   ++V+   +G+SKG+ F++Y 
Sbjct:    41 PNKGVTGDPLLTLFVARLNLQTKEEKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYK 100

Query:    88 TLEAAGKAIEGMDGKFLDGWVIFVEYAKPR 117
                +  KA    DG  +D   IFV+Y   R
Sbjct:   101 EERSLLKAYRDADGLVIDQHEIFVDYELER 130


>RGD|2322083 [details] [associations]
            symbol:LOC100360473 "poly A binding protein, cytoplasmic 5-like"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 RGD:2322083 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 KO:K13126 EMBL:CH473969 GeneTree:ENSGT00640000091232
            CTD:140886 OMA:FSEYGPT IPI:IPI00369761 RefSeq:NP_001103836.1
            UniGene:Rn.218841 Ensembl:ENSRNOT00000004462 GeneID:688518
            KEGG:rno:688518 OrthoDB:EOG4DZ1VH NextBio:736678 Uniprot:D4A5H0
        Length = 382

 Score = 148 (57.2 bits), Expect = 8.3e-10, P = 8.3e-10
 Identities = 33/80 (41%), Positives = 47/80 (58%)

Query:    38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
             TN+FV        DE L+  FS +G     K+++   +G SKGFGFV+Y T EAA KA+ 
Sbjct:   199 TNVFVKNFGDDIDDEKLKKLFSEYGPTESVKVIRDA-TGKSKGFGFVRYETHEAAQKAVL 257

Query:    98 GMDGKFLDGWVIFVEYAKPR 117
              + GK +DG V+ V  A+ +
Sbjct:   258 ELHGKSIDGKVLCVGRAQKK 277

 Score = 131 (51.2 bits), Expect = 5.9e-08, P = 5.9e-08
 Identities = 32/105 (30%), Positives = 50/105 (47%)

Query:    13 LRRLFSTSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKH 72
             LRR F          PP  P       +++  L +   DE L++ FS FG +  AK++  
Sbjct:   284 LRRRFERLKLKDKTRPPGVP-------IYIKNLDETINDEKLKEEFSLFGSISRAKVMM- 335

Query:    73 RESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKPR 117
              E G  KGFG V +++ E A KA+  M+G+ +    + V   + R
Sbjct:   336 -EVGQGKGFGVVCFSSFEEASKAVNEMNGRVVGSKTLHVTLGQAR 379

 Score = 109 (43.4 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 30/97 (30%), Positives = 50/97 (51%)

Query:    16 LFSTSPFSSSLNPPQRPQAEPST-NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRE 74
             L +  PF    + P     +    N+F+  L K   +  L   FSAFG ++  K+V   +
Sbjct:    83 LINGKPFRLMWSQPDDHLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD-D 141

Query:    75 SGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFV 111
             +G SKG+ +V + +L AA +AI  M+G  L+   ++V
Sbjct:   142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYV 177


>ZFIN|ZDB-GENE-030131-2167 [details] [associations]
            symbol:tia1l "cytotoxic granule-associated RNA
            binding protein 1, like" species:7955 "Danio rerio" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            ZFIN:ZDB-GENE-030131-2167 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 HSSP:P11940 GeneTree:ENSGT00680000099967 KO:K13201
            OMA:PAYNTTV HOVERGEN:HBG105006 EMBL:BX088551 EMBL:BC045485
            EMBL:BC066734 IPI:IPI00499030 RefSeq:NP_956476.1 UniGene:Dr.5585
            SMR:Q7ZVM6 Ensembl:ENSDART00000003957 GeneID:323447 KEGG:dre:323447
            CTD:323447 InParanoid:Q7ZVM6 NextBio:20808253 Uniprot:Q7ZVM6
        Length = 342

 Score = 147 (56.8 bits), Expect = 8.3e-10, P = 8.3e-10
 Identities = 38/124 (30%), Positives = 64/124 (51%)

Query:     5 AAVAAPRGLRRLFSTSPFSSSLNPP-QRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGE 63
             AA+AA  G + L      + +  P  Q+       ++FV  LS   + + +R  F+ FG+
Sbjct:    63 AALAAMNGRKILGKDMKVNWASTPSSQKKDTSNHFHVFVGDLSPEISTDDVRAAFAPFGK 122

Query:    64 VVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKPRQPPTLP 123
             +  A++VK   +G SKG+GF+ +     A  AI+ M+G++L G  I   +A  +  P+ P
Sbjct:   123 ISDARVVKDLATGKSKGYGFISFINKWDAESAIQQMNGQWLGGRQIRTNWATRK--PSAP 180

Query:   124 SQNN 127
               NN
Sbjct:   181 KSNN 184

 Score = 106 (42.4 bits), Expect = 2.6e-05, P = 2.6e-05
 Identities = 28/105 (26%), Positives = 52/105 (49%)

Query:    33 QAEPST-NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEA 91
             Q+ PS   ++  G++   +D+ +R TFS FG+++  ++    E GYS    FV++ + E 
Sbjct:   200 QSSPSNCTVYCGGIASGLSDQLMRQTFSPFGQIMEIRVFP--EKGYS----FVRFDSHEG 253

Query:    92 AGKAIEGMDGKFLDGWVIFVEYAKPR------QPPTLPSQNNTNF 130
             A  AI  ++G  ++G  +   + K        Q   +P QN   +
Sbjct:   254 AAHAIVSVNGTCIEGHTVKCYWGKETADMRSMQQMPMPQQNKPTY 298


>TAIR|locus:2119797 [details] [associations]
            symbol:AT4G20030 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0008150 "biological_process" evidence=ND] [GO:0009507
            "chloroplast" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BT025729
            EMBL:AK176834 IPI:IPI00538556 RefSeq:NP_567594.1 UniGene:At.26265
            UniGene:At.71246 ProteinModelPortal:Q67XI5 SMR:Q67XI5 STRING:Q67XI5
            EnsemblPlants:AT4G20030.1 GeneID:827748 KEGG:ath:AT4G20030
            TAIR:At4g20030 HOGENOM:HOG000005780 InParanoid:Q67XI5 OMA:DEVADCW
            PhylomeDB:Q67XI5 ProtClustDB:CLSN2689522 Genevestigator:Q67XI5
            Uniprot:Q67XI5
        Length = 152

 Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
 Identities = 27/80 (33%), Positives = 49/80 (61%)

Query:    37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
             ++ + V  L   T+++ L+  FSAFGE+   K++K      SKG+ F+++ + + A  AI
Sbjct:    39 ASKIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAI 98

Query:    97 EGMDGKFLDGWVIFVEYAKP 116
             E MD +  +G +I+++ AKP
Sbjct:    99 ETMDRRMYNGRMIYIDIAKP 118


>ZFIN|ZDB-GENE-030131-1506 [details] [associations]
            symbol:tia1 "cytotoxic granule-associated RNA
            binding protein 1" species:7955 "Danio rerio" [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 ZFIN:ZDB-GENE-030131-1506 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 HSSP:P11940
            GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
            CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:WAVEPGQ
            EMBL:CT027545 EMBL:AL928954 EMBL:BC045368 IPI:IPI00511851
            RefSeq:NP_997793.1 UniGene:Dr.159520 SMR:Q7ZVY0
            Ensembl:ENSDART00000074400 GeneID:793165 KEGG:dre:793165
            InParanoid:Q7ZVY0 NextBio:20931339 Uniprot:Q7ZVY0
        Length = 386

 Score = 148 (57.2 bits), Expect = 8.5e-10, P = 8.5e-10
 Identities = 39/129 (30%), Positives = 66/129 (51%)

Query:     5 AAVAAPRGLRRLFSTSPFSSSLNPP-QRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGE 63
             A++AA  G + +      + + +P  Q+       ++FV  LS   T + +R  F+ FG 
Sbjct:    62 ASLAAMNGRKIMGKEVKVNWATSPSSQKKDTSNHFHVFVGDLSPEITTDDIRAAFAPFGR 121

Query:    64 VVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKPRQPPTLP 123
             +  A++VK   +G SKG+GFV +     A  AI+ M G++L G  I   +A  R+PP   
Sbjct:   122 ISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT-RKPPAPK 180

Query:   124 SQNNTNFQY 132
             +   TN ++
Sbjct:   181 ATYETNTKH 189

 Score = 114 (45.2 bits), Expect = 4.2e-06, P = 4.2e-06
 Identities = 28/106 (26%), Positives = 54/106 (50%)

Query:    33 QAEPST-NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEA 91
             Q+ PS   ++  G++   T++ +R TFS FG+++  ++         KG+ FV++ + E+
Sbjct:   198 QSSPSNCTVYCGGVTTGLTEQLMRQTFSPFGQIMEVRVFP------DKGYSFVRFNSHES 251

Query:    92 AGKAIEGMDGKFLDGWVIFVEYAK-------PRQPPTLPSQNNTNF 130
             A  AI  ++G  L+G ++   + K       P Q   +P Q+   F
Sbjct:   252 AAHAIVSVNGTSLEGHIVKCYWGKETTDMVSPMQQVQVPQQSKVGF 297


>UNIPROTKB|E7ERJ7 [details] [associations]
            symbol:PABPC1 "Polyadenylate-binding protein 1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00909378
            ProteinModelPortal:E7ERJ7 SMR:E7ERJ7 PRIDE:E7ERJ7
            Ensembl:ENST00000522387 UCSC:uc011lhc.1 ArrayExpress:E7ERJ7
            Bgee:E7ERJ7 Uniprot:E7ERJ7
        Length = 604

 Score = 151 (58.2 bits), Expect = 8.8e-10, P = 8.8e-10
 Identities = 33/85 (38%), Positives = 51/85 (60%)

Query:    33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
             +A+  TN+++    +   DE L+D F  FG  +  K++   ESG SKGFGFV +   E A
Sbjct:   154 RAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDA 212

Query:    93 GKAIEGMDGKFLDGWVIFVEYAKPR 117
              KA++ M+GK L+G  I+V  A+ +
Sbjct:   213 QKAVDEMNGKELNGKQIYVGRAQKK 237

 Score = 136 (52.9 bits), Expect = 3.6e-08, P = 3.6e-08
 Identities = 31/80 (38%), Positives = 47/80 (58%)

Query:    39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
             NL+V  L     DE LR  FS FG +  AK++   E G SKGFGFV +++ E A KA+  
Sbjct:   263 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTE 320

Query:    99 MDGKFLDGWVIFVEYAKPRQ 118
             M+G+ +    ++V  A+ ++
Sbjct:   321 MNGRIVATKPLYVALAQRKE 340


>UNIPROTKB|Q9H361 [details] [associations]
            symbol:PABPC3 "Polyadenylate-binding protein 3"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA;NAS] [GO:0008143
            "poly(A) RNA binding" evidence=IDA] [GO:0016071 "mRNA metabolic
            process" evidence=NAS] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0005737 GO:GO:0016071 GO:GO:0000166 Gene3D:3.30.70.330
            eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            HOGENOM:HOG000217922 HPA:HPA045423 EMBL:AF132026 EMBL:AL136900
            EMBL:BC027617 IPI:IPI00301154 RefSeq:NP_112241.2 UniGene:Hs.458280
            PDB:2D9P PDBsum:2D9P ProteinModelPortal:Q9H361 SMR:Q9H361
            IntAct:Q9H361 STRING:Q9H361 PhosphoSite:Q9H361 DMDM:28201852
            PaxDb:Q9H361 PRIDE:Q9H361 DNASU:5042 Ensembl:ENST00000281589
            GeneID:5042 KEGG:hsa:5042 UCSC:uc001upy.3 CTD:5042
            GeneCards:GC13P025670 HGNC:HGNC:8556 MIM:604680 neXtProt:NX_Q9H361
            PharmGKB:PA32882 InParanoid:Q9H361 OMA:RTVPRYK OrthoDB:EOG4KH2TN
            PhylomeDB:Q9H361 EvolutionaryTrace:Q9H361 GenomeRNAi:5042
            NextBio:19414 ArrayExpress:Q9H361 Bgee:Q9H361 CleanEx:HS_PABPC3
            Genevestigator:Q9H361 GermOnline:ENSG00000151846 Uniprot:Q9H361
        Length = 631

 Score = 151 (58.2 bits), Expect = 9.4e-10, P = 9.4e-10
 Identities = 35/80 (43%), Positives = 50/80 (62%)

Query:    39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
             N+FV  L K   ++ L DT SAFG ++   +V   E+G SKG+GFV + T EAA +AI+ 
Sbjct:   100 NIFVKNLDKSINNKALYDTVSAFGNILSCNVVCD-ENG-SKGYGFVHFETHEAAERAIKK 157

Query:    99 MDGKFLDGWVIFVEYAKPRQ 118
             M+G  L+G  +FV   K R+
Sbjct:   158 MNGMLLNGRKVFVGQFKSRK 177

 Score = 145 (56.1 bits), Expect = 4.1e-09, P = 4.1e-09
 Identities = 32/85 (37%), Positives = 50/85 (58%)

Query:    33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
             +A+   N+++    +   DE L+D F  FG  +  K++   ESG SKGFGFV +   E A
Sbjct:   186 RAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDA 244

Query:    93 GKAIEGMDGKFLDGWVIFVEYAKPR 117
              KA++ M+GK L+G  I+V  A+ +
Sbjct:   245 QKAVDEMNGKELNGKQIYVGRAQKK 269

 Score = 137 (53.3 bits), Expect = 3.0e-08, P = 3.0e-08
 Identities = 31/80 (38%), Positives = 47/80 (58%)

Query:    39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
             NL+V  L     DE LR  FS FG +  AK++   E G SKGFGFV +++ E A KA+  
Sbjct:   295 NLYVKNLDDGIDDERLRKAFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTE 352

Query:    99 MDGKFLDGWVIFVEYAKPRQ 118
             M+G+ +    ++V  A+ ++
Sbjct:   353 MNGRIVATKPLYVALAQRKE 372


>FB|FBgn0015818 [details] [associations]
            symbol:Spx "Spliceosomal protein on the X" species:7227
            "Drosophila melanogaster" [GO:0000398 "mRNA splicing, via
            spliceosome" evidence=IC;ISS] [GO:0005681 "spliceosomal complex"
            evidence=ISS;NAS] [GO:0003729 "mRNA binding" evidence=ISS]
            [GO:0005686 "U2 snRNP" evidence=ISS] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0007052 "mitotic spindle organization"
            evidence=IMP] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
            [GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0007052 GO:GO:0022008 GO:GO:0000166 GO:GO:0003729
            Gene3D:3.30.70.330 GO:GO:0071011 GO:GO:0000398 GO:GO:0005686
            eggNOG:COG0724 HSSP:P11940 EMBL:X97197 ProteinModelPortal:Q24534
            SMR:Q24534 IntAct:Q24534 STRING:Q24534 PRIDE:Q24534
            FlyBase:FBgn0015818 InParanoid:Q24534 OrthoDB:EOG41894B
            ArrayExpress:Q24534 Bgee:Q24534 Uniprot:Q24534
        Length = 366

 Score = 147 (56.8 bits), Expect = 9.7e-10, P = 9.7e-10
 Identities = 30/77 (38%), Positives = 48/77 (62%)

Query:    39 NLFVSGLSKRTTDETLRDTFSAFGEVVHA-KIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
             N+F+  L     ++ L DTFSAFG ++   KI++  E+G SK F F+ +A+ EA+  A++
Sbjct:   120 NIFIGNLDVEVDEKLLYDTFSAFGVILQTPKIMRDPETGKSKSFAFINFASFEASDAAMD 179

Query:    98 GMDGKFLDGWVIFVEYA 114
              M+G++L    I V YA
Sbjct:   180 AMNGQYLCNRPISVSYA 196


>UNIPROTKB|J9P972 [details] [associations]
            symbol:DAZAP1 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104255 EMBL:AAEX03012650 EMBL:AAEX03012651
            Ensembl:ENSCAFT00000049246 Uniprot:J9P972
        Length = 258

 Score = 143 (55.4 bits), Expect = 9.9e-10, P = 9.9e-10
 Identities = 36/92 (39%), Positives = 50/92 (54%)

Query:    18 STSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGY 77
             S +P  SS++  +  QA     LFV GL   TT ETLR  FS +GEVV   I+K + +  
Sbjct:    36 SGAPSHSSVSARKAAQAA-LRKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQ 94

Query:    78 SKGFGFVKYATLEAAGKAIEG----MDGKFLD 105
             S+GFGFVK+      G  +      +DG+ +D
Sbjct:    95 SRGFGFVKFKDPNCVGTVLASRPHTLDGRNID 126

 Score = 100 (40.3 bits), Expect = 6.8e-05, P = 6.8e-05
 Identities = 29/113 (25%), Positives = 56/113 (49%)

Query:    25 SLNPPQR-PQAE--PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGF 81
             +++P Q+ P+++   S  +FV G+     +  LR+ F  FG V    ++   E    +GF
Sbjct:   124 NIDPKQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGF 183

Query:    82 GFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKPRQPPT-LPSQNNTNFQYG 133
             GF+ +   ++  +A+  M    + G  + V+ A+PR   +  P Q   + Q+G
Sbjct:   184 GFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRAEPRDSKSQAPGQPGAS-QWG 234


>UNIPROTKB|I3LBN9 [details] [associations]
            symbol:TRA2B "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0048026 "positive regulation of mRNA splicing, via
            spliceosome" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000398 "mRNA
            splicing, via spliceosome" evidence=IEA] [GO:0000381 "regulation of
            alternative mRNA splicing, via spliceosome" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
            GO:GO:0000398 GO:GO:0048026 GO:GO:0000381
            GeneTree:ENSGT00700000104309 OMA:YDDREYY Ensembl:ENSSSCT00000025696
            Uniprot:I3LBN9
        Length = 280

 Score = 144 (55.7 bits), Expect = 1.0e-09, P = 1.0e-09
 Identities = 38/109 (34%), Positives = 59/109 (54%)

Query:    14 RRLFSTSPFSSSL-NPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKH 72
             R   S SP S+   +   R   +P+  L V GLS  TT+  LR+ FS +G +    IV  
Sbjct:    85 RHSHSHSPMSTRRRHVGNRANPDPNCCLGVFGLSLYTTESDLREVFSKYGPIADVSIVYD 144

Query:    73 RESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKPRQPPT 121
             ++S  S+GF FV +  ++ A +A E  +G  LDG  I V+++  ++P T
Sbjct:   145 QQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKRPHT 193


>ZFIN|ZDB-GENE-990415-245 [details] [associations]
            symbol:elavl1 "ELAV (embryonic lethal, abnormal
            vision, Drosophila)-like 1 (Hu antigen R)" species:7955 "Danio
            rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 ZFIN:ZDB-GENE-990415-245 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 EMBL:BX649372 IPI:IPI00817195
            PRIDE:F1QM02 Ensembl:ENSDART00000146123 ArrayExpress:F1QM02
            Bgee:F1QM02 Uniprot:F1QM02
        Length = 340

 Score = 146 (56.5 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 31/82 (37%), Positives = 48/82 (58%)

Query:    35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGK 94
             +  TNL V+ L +  + + LR  FS+ GEV  AK+++ + +G+S G+GFV Y     A +
Sbjct:    31 DSKTNLIVNYLPQNMSQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNPNDAER 90

Query:    95 AIEGMDGKFLDGWVIFVEYAKP 116
             AI  ++G  L    I V YA+P
Sbjct:    91 AISTLNGLRLQSKTIKVSYARP 112

 Score = 114 (45.2 bits), Expect = 3.4e-06, P = 3.4e-06
 Identities = 26/99 (26%), Positives = 53/99 (53%)

Query:     6 AVAAPRGLRRLFSTSPFSSSLNPPQRPQAEP--STNLFVSGLSKRTTDETLRDTFSAFGE 63
             A++   GLR    T   S +     RP ++     NL++SGL K  T + + + F  +G 
Sbjct:    91 AISTLNGLRLQSKTIKVSYA-----RPSSDSIKDANLYISGLPKTMTQKDVEEMFGRYGR 145

Query:    64 VVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGK 102
             +++++++  + SG S+G  F+++     A  AI+ ++G+
Sbjct:   146 IINSRVLVDQASGLSRGVAFIRFDKRAEAEDAIKDLNGQ 184


>UNIPROTKB|B1AM48 [details] [associations]
            symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 HOVERGEN:HBG002295 HOGENOM:HOG000231162
            TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623 UniGene:Hs.166109
            HGNC:HGNC:3313 OrthoDB:EOG4JHCFV IPI:IPI00184721 SMR:B1AM48
            Ensembl:ENST00000440102 Uniprot:B1AM48
        Length = 189

 Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 34/91 (37%), Positives = 49/91 (53%)

Query:    27 NPPQRPQAEPS-TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVK 85
             +P      E S TNL V+ L +  T E L+  F + GE+   K+V+ + +G S G+GFV 
Sbjct:    27 SPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVN 86

Query:    86 YATLEAAGKAIEGMDGKFLDGWVIFVEYAKP 116
             Y   + A KAI  ++G  L    I V YA+P
Sbjct:    87 YIDPKDAEKAINTLNGLRLQTKTIKVSYARP 117

 Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
 Identities = 30/97 (30%), Positives = 51/97 (52%)

Query:     6 AVAAPRGLRRLFSTSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVV 65
             A+    GLR    T     S   P       + NL+VSGL K  T + L   FS +G ++
Sbjct:    96 AINTLNGLR--LQTKTIKVSYARPSSASIRDA-NLYVSGLPKTMTQKELEQLFSQYGRII 152

Query:    66 HAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGK 102
              ++I+  + +G S+G GF+++     A +AI+G++G+
Sbjct:   153 TSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189


>UNIPROTKB|B4DQI6 [details] [associations]
            symbol:TRA2A "cDNA FLJ50614, highly similar to
            Transformer-2 protein homolog" species:9606 "Homo sapiens"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG107480 IPI:IPI00220447
            UniGene:Hs.445652 HGNC:HGNC:16645 ChiTaRS:TRA2A EMBL:AC023105
            EMBL:AK298815 SMR:B4DQI6 STRING:B4DQI6 Ensembl:ENST00000392502
            Uniprot:B4DQI6
        Length = 180

 Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 34/93 (36%), Positives = 53/93 (56%)

Query:    31 RPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLE 90
             R   +P+T L V GLS  TT+  LR+ FS +G +    +V  + +G S+GF FV +  ++
Sbjct:    11 RANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERID 70

Query:    91 AAGKAIEGMDGKFLDGWVIFVEYA--KPRQPPT 121
              + +A+E  +G  LDG  I V+Y+  K    PT
Sbjct:    71 DSKEAMERANGMELDGRRIRVDYSITKRAHTPT 103


>UNIPROTKB|B4DUA9 [details] [associations]
            symbol:TRA2A "Transformer-2 protein homolog alpha"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            HOVERGEN:HBG107480 UniGene:Hs.445652 HGNC:HGNC:16645 ChiTaRS:TRA2A
            EMBL:AC023105 EMBL:AK300565 EMBL:AK300741 IPI:IPI01014274
            SMR:B4DUA9 STRING:B4DUA9 Ensembl:ENST00000538367 Uniprot:B4DUA9
        Length = 181

 Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 34/93 (36%), Positives = 53/93 (56%)

Query:    31 RPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLE 90
             R   +P+T L V GLS  TT+  LR+ FS +G +    +V  + +G S+GF FV +  ++
Sbjct:    11 RANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERID 70

Query:    91 AAGKAIEGMDGKFLDGWVIFVEYA--KPRQPPT 121
              + +A+E  +G  LDG  I V+Y+  K    PT
Sbjct:    71 DSKEAMERANGMELDGRRIRVDYSITKRAHTPT 103


>UNIPROTKB|F8W646 [details] [associations]
            symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022306
            ProteinModelPortal:F8W646 SMR:F8W646 PRIDE:F8W646
            Ensembl:ENST00000547708 ArrayExpress:F8W646 Bgee:F8W646
            Uniprot:F8W646
        Length = 156

 Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 36/105 (34%), Positives = 53/105 (50%)

Query:    24 SSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGF 83
             S    P+ P  E    LF+ GLS  TTDE+LR  F  +G +    +++   +  S+GFGF
Sbjct:     2 SKSESPKEP--EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGF 59

Query:    84 VKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKPRQPPTLPSQNNT 128
             V YAT+E    A+     K +DG V+  + A  R+    P  + T
Sbjct:    60 VTYATVEEVDAAMNARPHK-VDGRVVEPKRAVSREDSQRPGAHLT 103


>UNIPROTKB|Q96B58 [details] [associations]
            symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
            protein, isoform CRA_d" species:9606 "Homo sapiens" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CH471053
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
            HSSP:P11940 EMBL:AC016700 UniGene:Hs.413123 HGNC:HGNC:11802
            ChiTaRS:TIA1 EMBL:BC015944 IPI:IPI00743479 SMR:Q96B58 STRING:Q96B58
            Ensembl:ENST00000416149 UCSC:uc002sgm.3 Uniprot:Q96B58
        Length = 214

 Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 36/98 (36%), Positives = 54/98 (55%)

Query:    23 SSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFG 82
             SS++   QR Q     ++FV  LS   T E ++  F+ FG +  A++VK   +G SKG+G
Sbjct:    93 SSTVVSTQRSQDH--FHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYG 150

Query:    83 FVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKPRQPP 120
             FV +     A  AI+ M G++L G  I   +A  R+PP
Sbjct:   151 FVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT-RKPP 187


>ZFIN|ZDB-GENE-040426-1547 [details] [associations]
            symbol:tial1 "TIA1 cytotoxic granule-associated
            RNA binding protein-like 1" species:7955 "Danio rerio" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            ZFIN:ZDB-GENE-040426-1547 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 GeneTree:ENSGT00680000099967 EMBL:BX530079
            IPI:IPI00920337 ProteinModelPortal:E9QJJ0
            Ensembl:ENSDART00000135321 ArrayExpress:E9QJJ0 Bgee:E9QJJ0
            Uniprot:E9QJJ0
        Length = 389

 Score = 147 (56.8 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 42/126 (33%), Positives = 65/126 (51%)

Query:     5 AAVAAPRGLRRLFSTSPFSSSLNPP-QRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGE 63
             AA+AA  G + L      + +  P  Q+       ++FV  LS   T + +R  F+ FG+
Sbjct:    81 AALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTDDIRAAFAPFGK 140

Query:    64 VVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKPRQPPTLP 123
             +  A++VK   +G SKG+GFV +     A  AI  M G++L G  I   +A  R+PP   
Sbjct:   141 ISDARVVKDMTTGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWAT-RKPPAPK 199

Query:   124 S-QNNT 128
             S Q+N+
Sbjct:   200 SVQDNS 205

 Score = 111 (44.1 bits), Expect = 9.1e-06, P = 9.1e-06
 Identities = 27/103 (26%), Positives = 56/103 (54%)

Query:    33 QAEPST-NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEA 91
             Q+ P    ++  G+    T+  +R TFS FG+++  ++    E GYS    F+++++ E+
Sbjct:   217 QSSPQNCTVYCGGIQSGLTEHLMRQTFSPFGQIMEIRVFP--EKGYS----FIRFSSHES 270

Query:    92 AGKAIEGMDGKFLDGWVIFVEYAKPRQPPTLPSQNNTNFQYGR 134
             A  AI  ++G  ++G V+   + K  + P + ++N    +YG+
Sbjct:   271 AAHAIVSVNGTTIEGHVVKCYWGK--ESPDM-AKNVQPMEYGQ 310


>UNIPROTKB|Q3ZBT6 [details] [associations]
            symbol:TRA2B "Transformer-2 protein homolog beta"
            species:9913 "Bos taurus" [GO:0003729 "mRNA binding" evidence=ISS]
            [GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
            evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
            GO:GO:0000398 GO:GO:0048026 GO:GO:0000381 HOGENOM:HOG000276232
            GeneTree:ENSGT00700000104309 HSSP:P62995 KO:K12897
            OrthoDB:EOG4BVRW2 EMBL:BC103113 IPI:IPI00717759
            RefSeq:NP_001029948.1 UniGene:Bt.49333 ProteinModelPortal:Q3ZBT6
            SMR:Q3ZBT6 STRING:Q3ZBT6 PRIDE:Q3ZBT6 Ensembl:ENSBTAT00000002225
            GeneID:615156 KEGG:bta:615156 CTD:6434 eggNOG:NOG297815
            HOVERGEN:HBG104971 InParanoid:Q3ZBT6 OMA:YDDREYY NextBio:20899475
            Uniprot:Q3ZBT6
        Length = 288

 Score = 144 (55.7 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 38/109 (34%), Positives = 59/109 (54%)

Query:    14 RRLFSTSPFSSSL-NPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKH 72
             R   S SP S+   +   R   +P+  L V GLS  TT+  LR+ FS +G +    IV  
Sbjct:    93 RHSHSHSPMSTRRRHVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYD 152

Query:    73 RESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKPRQPPT 121
             ++S  S+GF FV +  ++ A +A E  +G  LDG  I V+++  ++P T
Sbjct:   153 QQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKRPHT 201


>UNIPROTKB|E2RD37 [details] [associations]
            symbol:TRA2B "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 OMA:YDDREYY EMBL:AAEX03017294
            ProteinModelPortal:E2RD37 PRIDE:E2RD37 Ensembl:ENSCAFT00000021194
            NextBio:20853966 Uniprot:E2RD37
        Length = 288

 Score = 144 (55.7 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 38/109 (34%), Positives = 59/109 (54%)

Query:    14 RRLFSTSPFSSSL-NPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKH 72
             R   S SP S+   +   R   +P+  L V GLS  TT+  LR+ FS +G +    IV  
Sbjct:    93 RHSHSHSPMSTRRRHVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYD 152

Query:    73 RESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKPRQPPT 121
             ++S  S+GF FV +  ++ A +A E  +G  LDG  I V+++  ++P T
Sbjct:   153 QQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKRPHT 201


>UNIPROTKB|P62995 [details] [associations]
            symbol:TRA2B "Transformer-2 protein homolog beta"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005515
            "protein binding" evidence=IPI] [GO:0000375 "RNA splicing, via
            transesterification reactions" evidence=TAS] [GO:0000381
            "regulation of alternative mRNA splicing, via spliceosome"
            evidence=IDA] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0048026
            "positive regulation of mRNA splicing, via spliceosome"
            evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
            EMBL:CH471052 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000398
            GO:GO:0048026 GO:GO:0000381 HOGENOM:HOG000276232 KO:K12897
            OrthoDB:EOG4BVRW2 CTD:6434 eggNOG:NOG297815 HOVERGEN:HBG104971
            OMA:YDDREYY EMBL:U61267 EMBL:U87836 EMBL:AF057159 EMBL:U68063
            EMBL:AK301118 EMBL:BC000160 EMBL:BC000451 EMBL:BC005898
            IPI:IPI00220938 IPI:IPI00301503 IPI:IPI00472633
            RefSeq:NP_001230808.1 RefSeq:NP_004584.1 UniGene:Hs.533122 PDB:2CQC
            PDB:2KXN PDB:2RRA PDB:2RRB PDBsum:2CQC PDBsum:2KXN PDBsum:2RRA
            PDBsum:2RRB ProteinModelPortal:P62995 SMR:P62995 DIP:DIP-42278N
            IntAct:P62995 MINT:MINT-5004415 STRING:P62995 PhosphoSite:P62995
            DMDM:51703330 PaxDb:P62995 PRIDE:P62995 DNASU:6434
            Ensembl:ENST00000342294 Ensembl:ENST00000382191
            Ensembl:ENST00000453386 Ensembl:ENST00000456380 GeneID:6434
            KEGG:hsa:6434 UCSC:uc003fpv.3 GeneCards:GC03M185632
            H-InvDB:HIX0003928 HGNC:HGNC:10781 HPA:CAB011692 MIM:602719
            neXtProt:NX_P62995 PharmGKB:PA35697 InParanoid:P62995
            PhylomeDB:P62995 ChiTaRS:TRA2B EvolutionaryTrace:P62995
            GenomeRNAi:6434 NextBio:24991 Bgee:P62995 CleanEx:HS_SFRS10
            Genevestigator:P62995 GermOnline:ENSG00000136527 Uniprot:P62995
        Length = 288

 Score = 144 (55.7 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 38/109 (34%), Positives = 59/109 (54%)

Query:    14 RRLFSTSPFSSSL-NPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKH 72
             R   S SP S+   +   R   +P+  L V GLS  TT+  LR+ FS +G +    IV  
Sbjct:    93 RHSHSHSPMSTRRRHVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYD 152

Query:    73 RESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKPRQPPT 121
             ++S  S+GF FV +  ++ A +A E  +G  LDG  I V+++  ++P T
Sbjct:   153 QQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKRPHT 201


>MGI|MGI:106016 [details] [associations]
            symbol:Tra2b "transformer 2 beta homolog (Drosophila)"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=ISO] [GO:0000398 "mRNA splicing, via
            spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003729
            "mRNA binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
            splicing" evidence=IEA] [GO:0048026 "positive regulation of mRNA
            splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            MGI:MGI:106016 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
            Gene3D:3.30.70.330 GO:GO:0000398 GO:GO:0048026 GO:GO:0000381
            HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309 KO:K12897
            OrthoDB:EOG4BVRW2 CTD:6434 eggNOG:NOG297815 HOVERGEN:HBG104971
            OMA:YDDREYY EMBL:X80232 EMBL:AK049573 EMBL:AK077418 EMBL:AK080378
            EMBL:BC061177 IPI:IPI00139259 IPI:IPI00457594 PIR:S68798
            RefSeq:NP_033212.1 UniGene:Mm.210352 UniGene:Mm.389440
            UniGene:Mm.442193 ProteinModelPortal:P62996 SMR:P62996
            STRING:P62996 PhosphoSite:P62996 PaxDb:P62996 PRIDE:P62996
            Ensembl:ENSMUST00000161286 Ensembl:ENSMUST00000162413 GeneID:20462
            KEGG:mmu:20462 UCSC:uc007ysc.1 InParanoid:P62996 NextBio:298551
            Bgee:P62996 Genevestigator:P62996 GermOnline:ENSMUSG00000022858
            Uniprot:P62996
        Length = 288

 Score = 144 (55.7 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 38/109 (34%), Positives = 59/109 (54%)

Query:    14 RRLFSTSPFSSSL-NPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKH 72
             R   S SP S+   +   R   +P+  L V GLS  TT+  LR+ FS +G +    IV  
Sbjct:    93 RHSHSHSPMSTRRRHVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYD 152

Query:    73 RESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKPRQPPT 121
             ++S  S+GF FV +  ++ A +A E  +G  LDG  I V+++  ++P T
Sbjct:   153 QQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKRPHT 201


>RGD|619886 [details] [associations]
            symbol:Tra2b "transformer 2 beta homolog (Drosophila)"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000302 "response to reactive oxygen species"
            evidence=IEP] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=ISO;ISS] [GO:0000398 "mRNA splicing, via
            spliceosome" evidence=ISO;ISS] [GO:0003723 "RNA binding"
            evidence=NAS] [GO:0003729 "mRNA binding" evidence=ISO;ISS]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
            evidence=ISO;ISS] [GO:0048026 "positive regulation of mRNA
            splicing, via spliceosome" evidence=ISO;ISS] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:619886 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
            Gene3D:3.30.70.330 GO:GO:0000302 GO:GO:0000398 GO:GO:0048026
            GO:GO:0000381 HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309
            KO:K12897 OrthoDB:EOG4BVRW2 CTD:6434 eggNOG:NOG297815
            HOVERGEN:HBG104971 EMBL:D49708 EMBL:BC070948 IPI:IPI00202484
            RefSeq:NP_476460.1 UniGene:Rn.8538 ProteinModelPortal:P62997
            SMR:P62997 IntAct:P62997 STRING:P62997 PhosphoSite:P62997
            PRIDE:P62997 Ensembl:ENSRNOT00000002429 GeneID:117259
            KEGG:rno:117259 UCSC:RGD:619886 InParanoid:P62997 NextBio:620130
            Genevestigator:P62997 GermOnline:ENSRNOG00000001783 Uniprot:P62997
        Length = 288

 Score = 144 (55.7 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 38/109 (34%), Positives = 59/109 (54%)

Query:    14 RRLFSTSPFSSSL-NPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKH 72
             R   S SP S+   +   R   +P+  L V GLS  TT+  LR+ FS +G +    IV  
Sbjct:    93 RHSHSHSPMSTRRRHVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYD 152

Query:    73 RESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKPRQPPT 121
             ++S  S+GF FV +  ++ A +A E  +G  LDG  I V+++  ++P T
Sbjct:   153 QQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKRPHT 201


>ASPGD|ASPL0000076731 [details] [associations]
            symbol:AN4865 species:162425 "Emericella nidulans"
            [GO:0008150 "biological_process" evidence=ND] [GO:0005575
            "cellular_component" evidence=ND] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:BN001303 EMBL:AACD01000084 eggNOG:COG0724
            KO:K11294 OrthoDB:EOG422DTZ RefSeq:XP_662469.1
            ProteinModelPortal:Q5B3L5 STRING:Q5B3L5
            EnsemblFungi:CADANIAT00005540 GeneID:2872664 KEGG:ani:AN4865.2
            HOGENOM:HOG000195050 OMA:SARIMTE Uniprot:Q5B3L5
        Length = 524

 Score = 149 (57.5 bits), Expect = 1.2e-09, P = 1.2e-09
 Identities = 34/81 (41%), Positives = 47/81 (58%)

Query:    37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
             S NLFV  LS   T+E L   F  FGE+  A+I+  R++G S+GFG+V++     A KA 
Sbjct:   276 SANLFVGNLSWNVTEEWLHQEFEQFGEL-SARIMTERDTGRSRGFGYVEFTNAADAAKAY 334

Query:    97 EGMDGKFLDGWVIFVEYAKPR 117
             E M    +DG  I ++YA  R
Sbjct:   335 EAMKEHEIDGRKINLDYATGR 355

 Score = 130 (50.8 bits), Expect = 1.3e-07, P = 1.3e-07
 Identities = 28/86 (32%), Positives = 48/86 (55%)

Query:    33 QAEP-STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEA 91
             Q  P S  LFV  L     ++++ + F   G V+  ++    ESG  KGFG+V+Y++++ 
Sbjct:   378 QTSPESDTLFVGNLPFSANEDSVHEVFGPQGNVLGIRLPTDMESGRPKGFGYVQYSSVDE 437

Query:    92 AGKAIEGMDGKFLDGWVIFVEYAKPR 117
             A KA   + G  +DG  I ++++ PR
Sbjct:   438 ARKAYNELQGAEIDGRPIRLDFSTPR 463


>UNIPROTKB|Q6GR16 [details] [associations]
            symbol:epabp-b "Embryonic polyadenylate-binding protein B"
            species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm" evidence=ISS]
            [GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
            "eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043009
            "chordate embryonic development" evidence=ISS] [GO:0043621 "protein
            self-association" evidence=ISS] [GO:0048255 "mRNA stabilization"
            evidence=ISS] [GO:0060212 "negative regulation of
            nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
            GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0043621 GO:GO:0048255 GO:GO:0043009 GO:GO:0060212
            GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
            SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:BC071118
            RefSeq:NP_001085351.1 UniGene:Xl.3974 ProteinModelPortal:Q6GR16
            SMR:Q6GR16 PRIDE:Q6GR16 GeneID:443777 KEGG:xla:443777 CTD:443777
            Xenbase:XB-GENE-6251876 GO:GO:0031370 Uniprot:Q6GR16
        Length = 629

 Score = 150 (57.9 bits), Expect = 1.2e-09, P = 1.2e-09
 Identities = 33/80 (41%), Positives = 51/80 (63%)

Query:    39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
             N+F+  L     ++ L DTFSAFG+++  K+V   E G S+G+GFV + T EAA +AI+ 
Sbjct:   100 NVFIKNLDDSIDNKALYDTFSAFGDILSCKVVCD-EYG-SRGYGFVHFETQEAANRAIQT 157

Query:    99 MDGKFLDGWVIFVEYAKPRQ 118
             M+G  L+   +FV + K R+
Sbjct:   158 MNGMLLNDRKVFVGHFKSRR 177

 Score = 148 (57.2 bits), Expect = 2.0e-09, P = 2.0e-09
 Identities = 30/80 (37%), Positives = 49/80 (61%)

Query:    38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
             TN+++    +   D+ L++ FSAFG  +  K++    SG S+GFGFV Y   E A KA+ 
Sbjct:   191 TNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDN-SGRSRGFGFVNYGNHEEAQKAVT 249

Query:    98 GMDGKFLDGWVIFVEYAKPR 117
              M+GK ++G +++V  A+ R
Sbjct:   250 EMNGKEVNGRMVYVGRAQKR 269

 Score = 132 (51.5 bits), Expect = 1.0e-07, P = 1.0e-07
 Identities = 28/80 (35%), Positives = 47/80 (58%)

Query:    39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
             NL+V  L     D+ LR  FS +G +   K++   E G+SKGFGFV +++ E A KA+  
Sbjct:   295 NLYVKNLDDGIDDDRLRKEFSPYGTITSTKVMT--EGGHSKGFGFVCFSSPEEATKAVTE 352

Query:    99 MDGKFLDGWVIFVEYAKPRQ 118
             M+G+ +    ++V  A+ ++
Sbjct:   353 MNGRIVSTKPLYVALAQRKE 372


>UNIPROTKB|E1C903 [details] [associations]
            symbol:PABPC4 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
            binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
            evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            GeneTree:ENSGT00640000091232 CTD:8761 OMA:XVVCDEN EMBL:AADN02043739
            EMBL:AADN02043740 IPI:IPI00587440 RefSeq:XP_417821.2
            UniGene:Gga.11375 ProteinModelPortal:E1C903 PRIDE:E1C903
            Ensembl:ENSGALT00000006028 GeneID:419674 KEGG:gga:419674
            NextBio:20822696 Uniprot:E1C903
        Length = 630

 Score = 150 (57.9 bits), Expect = 1.2e-09, P = 1.2e-09
 Identities = 43/118 (36%), Positives = 60/118 (50%)

Query:    10 PRGLRRLFSTSPFSSSLNPPQR---PQAEPST------NLFVSGLSKRTTDETLRDTFSA 60
             P    R   T  F      P R    Q +PS       N+F+  L K   ++ L DTFSA
Sbjct:    62 PADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 121

Query:    61 FGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKPRQ 118
             FG ++  K+V   E+G SKG+ FV + T +AA +AIE M+G  L+   +FV   K R+
Sbjct:   122 FGNILSCKVVCD-ENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRK 177

 Score = 147 (56.8 bits), Expect = 2.5e-09, P = 2.5e-09
 Identities = 30/85 (35%), Positives = 52/85 (61%)

Query:    33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
             +A+  TN+++        DE L++ FS +G+ +  K++    +G SKGFGFV +   E A
Sbjct:   186 KAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTD-PTGKSKGFGFVSFEKHEDA 244

Query:    93 GKAIEGMDGKFLDGWVIFVEYAKPR 117
              KA+E M+GK ++G ++FV  A+ +
Sbjct:   245 NKAVEEMNGKDINGKMVFVGRAQKK 269

 Score = 139 (54.0 bits), Expect = 1.8e-08, P = 1.8e-08
 Identities = 30/80 (37%), Positives = 47/80 (58%)

Query:    39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
             NL++  L     DE LR  FS FG +  AK++   E G SKGFGFV +++ E A KA+  
Sbjct:   295 NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTE 352

Query:    99 MDGKFLDGWVIFVEYAKPRQ 118
             M+G+ +    ++V  A+ ++
Sbjct:   353 MNGRIVGSKPLYVALAQRKE 372


>ZFIN|ZDB-GENE-030131-9663 [details] [associations]
            symbol:pabpc4 "poly(A) binding protein,
            cytoplasmic 4 (inducible form)" species:7955 "Danio rerio"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            ZFIN:ZDB-GENE-030131-9663 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            HOGENOM:HOG000217922 HSSP:P11940 CTD:8761 OrthoDB:EOG4T1HM1
            EMBL:BC053126 IPI:IPI00489290 RefSeq:NP_958453.1 UniGene:Dr.16284
            ProteinModelPortal:Q7T3G5 SMR:Q7T3G5 STRING:Q7T3G5 PRIDE:Q7T3G5
            GeneID:321035 KEGG:dre:321035 InParanoid:Q7T3G5 OMA:NGMEASA
            NextBio:20807204 ArrayExpress:Q7T3G5 Bgee:Q7T3G5 Uniprot:Q7T3G5
        Length = 637

 Score = 150 (57.9 bits), Expect = 1.2e-09, P = 1.2e-09
 Identities = 43/118 (36%), Positives = 60/118 (50%)

Query:    10 PRGLRRLFSTSPFSSSLNPPQR---PQAEPST------NLFVSGLSKRTTDETLRDTFSA 60
             P    R   T  F      P R    Q +PS       N+F+  L K   ++ L DTFSA
Sbjct:    63 PADAERALDTMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 122

Query:    61 FGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKPRQ 118
             FG ++  K+V   E+G SKG+ FV + T +AA +AIE M+G  L+   +FV   K R+
Sbjct:   123 FGNILSCKVVCD-ENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRK 178

 Score = 139 (54.0 bits), Expect = 1.8e-08, P = 1.8e-08
 Identities = 30/80 (37%), Positives = 47/80 (58%)

Query:    39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
             NL++  L     DE LR  FS FG +  AK++   E G SKGFGFV +++ E A KA+  
Sbjct:   296 NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EEGRSKGFGFVCFSSPEEATKAVTE 353

Query:    99 MDGKFLDGWVIFVEYAKPRQ 118
             M+G+ +    ++V  A+ ++
Sbjct:   354 MNGRIVGSKPLYVALAQRKE 373

 Score = 136 (52.9 bits), Expect = 3.9e-08, P = 3.9e-08
 Identities = 28/85 (32%), Positives = 49/85 (57%)

Query:    33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
             +A+  TN+++        D+ L++ F  +G+ +  K++    +G S+GFGFV Y   E A
Sbjct:   187 KAKEFTNVYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTD-PTGKSRGFGFVSYEKHEDA 245

Query:    93 GKAIEGMDGKFLDGWVIFVEYAKPR 117
              KA+E M+G  L+G  +FV  A+ +
Sbjct:   246 NKAVEEMNGTELNGKTVFVGRAQKK 270


>RGD|1559517 [details] [associations]
            symbol:Pabpc4l "poly(A) binding protein, cytoplasmic 4-like"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1559517
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
            TIGRFAMs:TIGR01628 OrthoDB:EOG4M398T GeneTree:ENSGT00640000091232
            CTD:132430 EMBL:CH474091 IPI:IPI00367682 RefSeq:NP_001099899.1
            UniGene:Rn.218503 Ensembl:ENSRNOT00000017012 GeneID:295010
            KEGG:rno:295010 UCSC:RGD:1559517 NextBio:638845 Uniprot:D3ZGA4
        Length = 370

 Score = 146 (56.5 bits), Expect = 1.3e-09, P = 1.3e-09
 Identities = 32/80 (40%), Positives = 48/80 (60%)

Query:    39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
             N+F+  L K   ++TL + FS FG+++ +K++   E   SKG+GFV Y    AA +AIE 
Sbjct:    99 NVFIKNLDKSIDNKTLYEHFSPFGKIMSSKVMTDEEG--SKGYGFVHYQDQRAADRAIEE 156

Query:    99 MDGKFLDGWVIFVEYAKPRQ 118
             M+GK L    +FV   K R+
Sbjct:   157 MNGKLLRDSTLFVARFKSRK 176

 Score = 145 (56.1 bits), Expect = 1.7e-09, P = 1.7e-09
 Identities = 30/80 (37%), Positives = 49/80 (61%)

Query:    38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
             TN+++        DE+LR  FS +G+ +  K++K   SG SK FGFV + + +AA  A+E
Sbjct:   190 TNVYIKNFGDDMDDESLRSVFSKYGQTLSVKVMKDA-SGKSKRFGFVSFDSHKAAKNAVE 248

Query:    98 GMDGKFLDGWVIFVEYAKPR 117
              M+G+ ++G  IFV  A+ +
Sbjct:   249 DMNGRDINGQTIFVGRAQKK 268

 Score = 140 (54.3 bits), Expect = 5.8e-09, P = 5.8e-09
 Identities = 29/75 (38%), Positives = 45/75 (60%)

Query:    30 QRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATL 89
             +R +A  +  L++  L     DETLR  FS FG +   K+++  E+G SKGFG + + + 
Sbjct:   285 ERIRARQAAKLYIKNLDDTIDDETLRKEFSVFGSICRVKVMQ--EAGQSKGFGLICFFSP 342

Query:    90 EAAGKAIEGMDGKFL 104
             EAA KA+  M+G+ L
Sbjct:   343 EAAAKAMAEMNGRIL 357


>POMBASE|SPBC18H10.03 [details] [associations]
            symbol:tif35 "translation initiation factor eIF3g"
            species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
            translational initiation" evidence=NAS] [GO:0003723 "RNA binding"
            evidence=ISM] [GO:0005634 "nucleus" evidence=IDA] [GO:0005829
            "cytosol" evidence=IDA] [GO:0006413 "translational initiation"
            evidence=ISS] [GO:0016282 "eukaryotic 43S preinitiation complex"
            evidence=IDA] [GO:0071540 "eukaryotic translation initiation factor
            3 complex, eIF3e" evidence=IDA] [GO:0071541 "eukaryotic translation
            initiation factor 3 complex, eIF3m" evidence=IDA] [GO:0003743
            "translation initiation factor activity" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017334
            Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360
            PomBase:SPBC18H10.03 GO:GO:0005829 GO:GO:0005634 GO:GO:0000166
            EMBL:CU329671 Gene3D:3.30.70.330 GenomeReviews:CU329671_GR
            GO:GO:0003723 GO:GO:0003743 eggNOG:COG0724 GO:GO:0002183 KO:K03248
            HAMAP:MF_03006 InterPro:IPR024675 PANTHER:PTHR10352 Pfam:PF12353
            GO:GO:0016282 GO:GO:0071540 GO:GO:0071541 HOGENOM:HOG000239560
            OMA:NSEFDAP OrthoDB:EOG4QJVX7 EMBL:AB011823 EMBL:D89144 PIR:T39767
            RefSeq:NP_595727.1 ProteinModelPortal:P78795 STRING:P78795
            EnsemblFungi:SPBC18H10.03.1 GeneID:2540819 KEGG:spo:SPBC18H10.03
            NextBio:20801936 Uniprot:P78795
        Length = 282

 Score = 143 (55.4 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 31/85 (36%), Positives = 48/85 (56%)

Query:    33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
             + + S  L V+ LS  T +E LRD F  FG +    + K +E+G +KGF FV Y   + A
Sbjct:   197 ERDDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCA 256

Query:    93 GKAIEGMDGKFLDGWVIFVEYAKPR 117
              KA + +DG   +  ++  E++KPR
Sbjct:   257 IKARDRLDGYGWNNLILRCEFSKPR 281


>UNIPROTKB|F1SDR6 [details] [associations]
            symbol:PABPC1L "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
            EMBL:CU633343 Ensembl:ENSSSCT00000008080 Uniprot:F1SDR6
        Length = 608

 Score = 149 (57.5 bits), Expect = 1.5e-09, P = 1.5e-09
 Identities = 30/80 (37%), Positives = 51/80 (63%)

Query:    38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
             TN++V  L     +  L+D FS FG+++  K+++  +SG+S+GFGFV +   E A KA+ 
Sbjct:   191 TNIYVKNLHVDVDERCLQDLFSQFGKILSVKVMRD-DSGHSRGFGFVNFEKHEDAQKAVT 249

Query:    98 GMDGKFLDGWVIFVEYAKPR 117
              M+GK + G +++V  A+ R
Sbjct:   250 DMNGKEVSGRLLYVGRAQKR 269

 Score = 138 (53.6 bits), Expect = 2.2e-08, P = 2.2e-08
 Identities = 32/80 (40%), Positives = 47/80 (58%)

Query:    39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
             N+F+  L     ++ L DTFS FG ++  K+V   + G S+GFGFV + T EAA  AI  
Sbjct:   100 NVFIKNLEDSIDNKALYDTFSTFGNILSCKVVCD-DHG-SRGFGFVHFETHEAAQNAIRT 157

Query:    99 MDGKFLDGWVIFVEYAKPRQ 118
             M+G  L+   +FV + K R+
Sbjct:   158 MNGMLLNDRKVFVGHFKSRR 177

 Score = 135 (52.6 bits), Expect = 4.7e-08, P = 4.7e-08
 Identities = 29/80 (36%), Positives = 48/80 (60%)

Query:    39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
             NL+V  L     DE LR  F+ +G +  AK++   E G+SKGFGFV +++ E A KA+  
Sbjct:   295 NLYVKNLDDSIDDEKLRKEFAPYGMITSAKVMT--EGGHSKGFGFVCFSSPEEATKAVTE 352

Query:    99 MDGKFLDGWVIFVEYAKPRQ 118
             M+G+ +    ++V  A+ ++
Sbjct:   353 MNGRIVGTKPLYVALAQRKE 372

WARNING:  HSPs involving 1174 database sequences were not reported due to the
          limiting value of parameter B = 250.


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.132   0.389    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      135       135   0.00091  102 3  11 22  0.43    31
                                                     30  0.44    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1424
  No. of states in DFA:  548 (58 KB)
  Total size of DFA:  120 KB (2079 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.05u 0.08s 16.13t   Elapsed:  00:00:02
  Total cpu time:  16.08u 0.08s 16.16t   Elapsed:  00:00:02
  Start:  Thu May  9 22:36:04 2013   End:  Thu May  9 22:36:06 2013
WARNINGS ISSUED:  2
the Gene Ontology

BLAST Results

Query Summary

Query Sequence

High Scoring Gene Products

Raw Blast Data


Symbol, full name	Information	P value
BLAST match view associations BLAST with AT5G54580 AT5G54580 AT5G54580	protein from Arabidopsis thaliana	4.4e-36
BLAST match view associations BLAST with AT2G37510 AT2G37510 AT2G37510	protein from Arabidopsis thaliana	2.9e-23
BLAST match view associations BLAST with AT1G73530 AT1G73530 AT1G73530	protein from Arabidopsis thaliana	3.0e-21
BLAST match view associations BLAST with ORRM1 ORRM1 ORRM1 AT3G20930	protein from Arabidopsis thaliana	3.1e-15
BLAST match view associations BLAST with AT3G46020 AT3G46020 AT3G46020	protein from Arabidopsis thaliana	6.9e-15
BLAST match view associations BLAST with CCR1 CCR1 CCR1 AT4G39260	protein from Arabidopsis thaliana	1.1e-14
BLAST match view associations BLAST with GR-RBP2 GR-RBP2 GR-RBP2 AT4G13850	protein from Arabidopsis thaliana	1.4e-14
BLAST match view associations BLAST with AT5G06210 AT5G06210 AT5G06210	protein from Arabidopsis thaliana	1.8e-14
BLAST match view associations BLAST with GR-RBP3 GR-RBP3 GR-RBP3 AT5G61030	protein from Arabidopsis thaliana	1.9e-14
BLAST match view associations BLAST with GRP4 GRP4 GRP4 AT3G23830	protein from Arabidopsis thaliana	6.2e-14
BLAST match view associations BLAST with AT5G51300 AT5G51300 AT5G51300	protein from Arabidopsis thaliana	8.9e-14
BLAST match view associations BLAST with blt801 blt801 blt801 Glycine-rich RNA-binding protein blt801	protein from Hordeum vulgare	1.0e-13
BLAST match view associations BLAST with GR-RBP6 GR-RBP6 GR-RBP6 AT1G18630	protein from Arabidopsis thaliana	1.6e-13
BLAST match view associations BLAST with GR-RBP5 GR-RBP5 GR-RBP5 AT1G74230	protein from Arabidopsis thaliana	3.2e-13
BLAST match view associations BLAST with ATRZ-1A ATRZ-1A ATRZ-1A AT3G26420	protein from Arabidopsis thaliana	5.6e-13
BLAST match view associations BLAST with NCL NCL NCL Nucleolin	protein from Homo sapiens	6.4e-13
BLAST match view associations BLAST with CG5213 CG5213 CG5213	protein from Drosophila melanogaster	7.1e-13
BLAST match view associations BLAST with LOC100737174 LOC100737174 LOC100737174 Uncharacterized protein	protein from Sus scrofa	1.0e-12
BLAST match view associations BLAST with emb2444 emb2444 emb2444 AT2G18510	protein from Arabidopsis thaliana	1.5e-12
BLAST match view associations BLAST with PABPC4 PABPC4 PABPC4 Polyadenylate-binding protein 4	protein from Homo sapiens	1.9e-12
BLAST match view associations BLAST with RPS19 RPS19 RPS19 AT5G47320	protein from Arabidopsis thaliana	1.9e-12
BLAST match view associations BLAST with GRP7 GRP7 GRP7 AT2G21660	protein from Arabidopsis thaliana	2.4e-12
BLAST match view associations BLAST with zgc:112425 zgc:112425 zgc:112425	gene_product from Danio rerio	2.4e-12
BLAST match view associations BLAST with AT3G08000 AT3G08000 AT3G08000	protein from Arabidopsis thaliana	3.1e-12
BLAST match view associations BLAST with E9PTI5 E9PTI5 E9PTI5 Uncharacterized protein	protein from Rattus norvegicus	3.4e-12
BLAST match view associations BLAST with LOC100737210 LOC100737210 LOC100737210 Uncharacterized protein	protein from Sus scrofa	3.9e-12
BLAST match view associations BLAST with AT4G13860 AT4G13860 AT4G13860	protein from Arabidopsis thaliana	3.9e-12
BLAST match view associations BLAST with Ncl Ncl Ncl nucleolin	protein from Mus musculus	4.9e-12
BLAST match view associations BLAST with NCL NCL NCL Nucleolin	protein from Homo sapiens	4.9e-12
BLAST match view associations BLAST with NCL NCL NCL Nucleolin	protein from Macaca fascicularis	4.9e-12
BLAST match view associations BLAST with NCL NCL NCL Nucleolin	protein from Pongo abelii	4.9e-12
BLAST match view associations BLAST with Ncl Ncl Ncl nucleolin	gene from Rattus norvegicus	4.9e-12
BLAST match view associations BLAST with NCL NCL NCL Nucleolin	protein from Mesocricetus auratus	4.9e-12
BLAST match view associations BLAST with Ncl Ncl Ncl Nucleolin	protein from Rattus norvegicus	4.9e-12
BLAST match view associations BLAST with NCL NCL NCL Uncharacterized protein	protein from Canis lupus familiaris	4.9e-12
BLAST match view associations BLAST with G3MYJ0 G3MYJ0 G3MYJ0 Uncharacterized protein	protein from Bos taurus	5.1e-12
BLAST match view associations BLAST with G3MXT4 G3MXT4 G3MXT4 Uncharacterized protein	protein from Bos taurus	5.2e-12
BLAST match view associations BLAST with G3X7M4 G3X7M4 G3X7M4 Uncharacterized protein	protein from Bos taurus	5.2e-12
BLAST match view associations BLAST with NCL NCL NCL Uncharacterized protein	protein from Bos taurus	6.4e-12
BLAST match view associations BLAST with PABPC4 PABPC4 PABPC4 Uncharacterized protein	protein from Canis lupus familiaris	8.6e-12
BLAST match view associations BLAST with PABPC4 PABPC4 PABPC4 Uncharacterized protein	protein from Canis lupus familiaris	1.0e-11
BLAST match view associations BLAST with cirbp cirbp cirbp Cold-inducible RNA-binding protein	protein from Xenopus (Silurana) tropicalis	1.0e-11
BLAST match view associations BLAST with PABPC4 PABPC4 PABPC4 Uncharacterized protein	protein from Sus scrofa	1.1e-11
BLAST match view associations BLAST with DDB_G0292698 DDB_G0292698 DDB_G0292698 RNA-binding region RNP-1 domain-containing protein	gene from Dictyostelium discoideum	1.1e-11
BLAST match view associations BLAST with PABPC4 PABPC4 PABPC4 PABPC4 protein	protein from Bos taurus	1.5e-11
BLAST match view associations BLAST with sap-49 sap-49 sap-49	gene from Caenorhabditis elegans	1.5e-11
BLAST match view associations BLAST with sap-49 sap-49 sap-49 Splicing factor 3B subunit 4	protein from Caenorhabditis elegans	1.5e-11
BLAST match view associations BLAST with PABPC5 PABPC5 PABPC5 Polyadenylate-binding protein 5	protein from Homo sapiens	1.7e-11
BLAST match view associations BLAST with PABPC4 PABPC4 PABPC4 Polyadenylate-binding protein 4	protein from Homo sapiens	1.8e-11
BLAST match view associations BLAST with Elavl1 Elavl1 Elavl1 ELAV (embryonic lethal, abnormal vision)-like 1 (Hu antigen R)	protein from Mus musculus	2.1e-11
BLAST match view associations BLAST with Elavl1 Elavl1 Elavl1 ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R)	gene from Rattus norvegicus	2.1e-11
BLAST match view associations BLAST with RBM3 RBM3 RBM3 Uncharacterized protein	protein from Sus scrofa	2.2e-11
BLAST match view associations BLAST with AT5G19030 AT5G19030 AT5G19030	protein from Arabidopsis thaliana	2.2e-11
BLAST match view associations BLAST with PABPC4 PABPC4 PABPC4 Polyadenylate-binding protein 4	protein from Homo sapiens	2.2e-11
BLAST match view associations BLAST with PABPC4L PABPC4L PABPC4L Polyadenylate-binding protein 4-like	protein from Homo sapiens	2.3e-11
BLAST match view associations BLAST with PABPC4 PABPC4 PABPC4 Polyadenylate-binding protein 4	protein from Homo sapiens	2.4e-11
BLAST match view associations BLAST with ELAVL1 ELAVL1 ELAVL1 ELAV-like 1 (Hu antigen R)	protein from Sus scrofa	2.7e-11
BLAST match view associations BLAST with Rbm3 Rbm3 Rbm3 RNA binding motif protein 3	protein from Mus musculus	2.8e-11
BLAST match view associations BLAST with AT5G59860 AT5G59860 AT5G59860	protein from Arabidopsis thaliana	2.8e-11
BLAST match view associations BLAST with PABPC4L PABPC4L PABPC4L Polyadenylate-binding protein 4-like	protein from Homo sapiens	3.1e-11
BLAST match view associations BLAST with NCL NCL NCL Nucleolin	protein from Gallus gallus	3.4e-11
BLAST match view associations BLAST with NCL NCL NCL Nucleolin	protein from Gallus gallus	3.4e-11
BLAST match view associations BLAST with NCL NCL NCL Nucleolin	protein from Gallus gallus	3.4e-11
BLAST match view associations BLAST with F6RBQ9 F6RBQ9 F6RBQ9 Uncharacterized protein	protein from Bos taurus	3.5e-11
BLAST match view associations BLAST with RBM3 RBM3 RBM3 Putative RNA-binding protein 3	protein from Homo sapiens	3.5e-11
BLAST match view associations BLAST with ELAVL1 ELAVL1 ELAVL1 ELAV (Embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R)	protein from Bos taurus	4.4e-11
BLAST match view associations BLAST with ELAVL1 ELAVL1 ELAVL1 Uncharacterized protein	protein from Gallus gallus	4.4e-11
BLAST match view associations BLAST with ELAVL1 ELAVL1 ELAVL1 ELAV-like protein 1	protein from Homo sapiens	4.4e-11
BLAST match view associations BLAST with rbm8a rbm8a rbm8a RNA binding motif protein 8A	gene_product from Danio rerio	4.5e-11
BLAST match view associations BLAST with ELAVL1 ELAVL1 ELAVL1 Uncharacterized protein	protein from Canis lupus familiaris	4.8e-11
BLAST match view associations BLAST with ELAVL1 ELAVL1 ELAVL1 ELAV-like protein 1	protein from Homo sapiens	5.5e-11
BLAST match view associations BLAST with ncl ncl ncl nucleolin	gene_product from Danio rerio	5.7e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	5.8e-11
BLAST match view associations BLAST with PABPC5 PABPC5 PABPC5 Uncharacterized protein	protein from Bos taurus	6.7e-11
BLAST match view associations BLAST with cirbp cirbp cirbp Cold-inducible RNA-binding protein	protein from Rana catesbeiana	7.4e-11
BLAST match view associations BLAST with Rbm3 Rbm3 Rbm3 RNA binding motif (RNP1, RRM) protein 3	gene from Rattus norvegicus	7.4e-11
BLAST match view associations BLAST with cirbp cirbp cirbp cold inducible RNA binding protein	gene_product from Danio rerio	7.4e-11
BLAST match view associations BLAST with DDB_G0290307 DDB_G0290307 DDB_G0290307 ELAVL1-like protein	gene from Dictyostelium discoideum	7.6e-11
BLAST match view associations BLAST with AT2G43370 AT2G43370 AT2G43370	protein from Arabidopsis thaliana	7.9e-11
BLAST match view associations BLAST with Pabpc6 Pabpc6 Pabpc6 poly(A) binding protein, cytoplasmic 6	gene from Rattus norvegicus	8.2e-11
BLAST match view associations BLAST with pabpc1A pabpc1A pabpc1A polyadenylate binding protein (PABP)	gene from Dictyostelium discoideum	8.5e-11
BLAST match view associations BLAST with PABPC5 PABPC5 PABPC5 Polyadenylate-binding protein 5	protein from Homo sapiens	8.6e-11
BLAST match view associations BLAST with PABPC5 PABPC5 PABPC5 Uncharacterized protein	protein from Canis lupus familiaris	8.6e-11
BLAST match view associations BLAST with PABPC1 PABPC1 PABPC1 Polyadenylate-binding protein 1	protein from Homo sapiens	9.2e-11
BLAST match view associations BLAST with PABPC1 PABPC1 PABPC1 Uncharacterized protein	protein from Canis lupus familiaris	9.3e-11
BLAST match view associations BLAST with tra2a tra2a tra2a transformer-2 alpha	gene_product from Danio rerio	9.3e-11
BLAST match view associations BLAST with SF3B4 SF3B4 SF3B4 Splicing factor 3b, subunit 4, 49kDa	protein from Homo sapiens	9.4e-11
BLAST match view associations BLAST with MCA1010 MCA1010 MCA1010 RNA-binding protein	protein from Methylococcus capsulatus str. Bath	9.4e-11
BLAST match view associations BLAST with PABPC1 PABPC1 PABPC1 Polyadenylate-binding protein 1	protein from Bos taurus	1.0e-10
BLAST match view associations BLAST with PABPC1 PABPC1 PABPC1 Uncharacterized protein	protein from Canis lupus familiaris	1.0e-10
BLAST match view associations BLAST with PABPC1 PABPC1 PABPC1 Polyadenylate-binding protein 1	protein from Homo sapiens	1.0e-10
BLAST match view associations BLAST with PABPC1 PABPC1 PABPC1 Uncharacterized protein	protein from Sus scrofa	1.0e-10
BLAST match view associations BLAST with PABPC1 PABPC1 PABPC1 Polyadenylate-binding protein 1	protein from Pongo abelii	1.0e-10