BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032702
(135 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FNR1|RBG3_ARATH Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis
thaliana GN=RBG3 PE=2 SV=1
Length = 309
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 61/96 (63%), Gaps = 3/96 (3%)
Query: 25 SLNPP---QRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGF 81
SL+ P Q + S+ LF+ G++ +++LR+ F+ +GEVV +++ RE+G S+GF
Sbjct: 24 SLSSPSLFQAIRCMSSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGF 83
Query: 82 GFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKPR 117
GFV + + EAA AI+ +DG+ L G V+ V YA R
Sbjct: 84 GFVTFTSSEAASSAIQALDGRDLHGRVVKVNYANDR 119
>sp|Q9SVM8|RBG2_ARATH Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis
thaliana GN=RBG2 PE=1 SV=1
Length = 158
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/87 (50%), Positives = 55/87 (63%), Gaps = 2/87 (2%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
ST LF+ GLS T D +LRD F+ FG+VV AK++ RE+G S+GFGFV + AA AI
Sbjct: 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93
Query: 97 EGMDGKFLDGWVIFVEYAKPRQPPTLP 123
MDGK L+G I V A R P+ P
Sbjct: 94 SEMDGKELNGRHIRVNPANDR--PSAP 118
>sp|Q43472|GRP_HORVU Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare
GN=blt801 PE=1 SV=1
Length = 161
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 57/87 (65%)
Query: 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAG 93
A+ FV GL T D++L++ FS +G+V+ +KI+ RE+G S+GFGFV +A+ EA
Sbjct: 2 ADVEYRCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMR 61
Query: 94 KAIEGMDGKFLDGWVIFVEYAKPRQPP 120
+AIE M+G+ LDG I V A+ R+
Sbjct: 62 QAIEAMNGQDLDGRNITVNEAQSRRSD 88
>sp|Q9LIS2|RBG4_ARATH Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis
thaliana GN=RBG4 PE=2 SV=1
Length = 136
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 53/81 (65%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
S+ LFV GLS T D +L+ F++FGEV A ++ RE+G S+GFGFV ++ ++A AI
Sbjct: 34 SSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 93
Query: 97 EGMDGKFLDGWVIFVEYAKPR 117
+ MDGK L+G I V A R
Sbjct: 94 KEMDGKELNGRQIRVNLATER 114
>sp|Q03251|RBG8_ARATH Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana GN=RBG8
PE=1 SV=1
Length = 169
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/82 (50%), Positives = 53/82 (64%)
Query: 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAG 93
+E FV GL+ T DE L+ TFS FG+V+ +KI+ RESG S+GFGFV + +A
Sbjct: 2 SEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMR 61
Query: 94 KAIEGMDGKFLDGWVIFVEYAK 115
AIE M+GK LDG VI V A+
Sbjct: 62 DAIEEMNGKELDGRVITVNEAQ 83
>sp|P08199|NUCL_MESAU Nucleolin OS=Mesocricetus auratus GN=NCL PE=1 SV=2
Length = 714
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 57/85 (67%), Gaps = 3/85 (3%)
Query: 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
+++PS LFV GLS+ TT+ETL+++F V A+IV RE+G SKGFGFV + + E A
Sbjct: 567 RSQPSKTLFVKGLSEDTTEETLKESFEG---SVRARIVTDRETGSSKGFGFVDFNSEEDA 623
Query: 93 GKAIEGMDGKFLDGWVIFVEYAKPR 117
A E M+ +DG + +++AKP+
Sbjct: 624 KAAKEAMEDGEIDGNKVTLDWAKPK 648
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
L LS T++ L++ F + + ++V G SKG ++++ + A K +E
Sbjct: 396 LLAKNLSFNITEDELKEVFE---DALEIRLVSQ--DGKSKGIAYIEFKSEADAEKNLEEK 450
Query: 100 DGKFLDGWVIFVEY 113
G +DG + + Y
Sbjct: 451 QGAEIDGRSVSLYY 464
>sp|Q5RF26|NUCL_PONAB Nucleolin OS=Pongo abelii GN=NCL PE=2 SV=3
Length = 712
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 65/116 (56%), Gaps = 19/116 (16%)
Query: 2 ALRAAVAAPRGLRRLFSTSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAF 61
A+R + PRG +P R Q PS LFV GLS+ TT+ETL+++F
Sbjct: 554 AIRLELQGPRG--------------SPNARSQ--PSKTLFVKGLSEDTTEETLKESFDG- 596
Query: 62 GEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKPR 117
V A+IV RE+G SKGFGFV + + E A A E M+ +DG + +++AKP+
Sbjct: 597 --SVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 650
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
L L + T + L++ F E+ ++V + G SKG ++++ T A K E
Sbjct: 397 LLAKNLPYKVTQDELKEVFEDAAEI---RLV--SKDGKSKGIAYIEFKTEADAEKTFEEK 451
Query: 100 DGKFLDGWVIFVEY 113
G +DG I + Y
Sbjct: 452 QGTEIDGRSISLYY 465
>sp|P19338|NUCL_HUMAN Nucleolin OS=Homo sapiens GN=NCL PE=1 SV=3
Length = 710
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 65/116 (56%), Gaps = 19/116 (16%)
Query: 2 ALRAAVAAPRGLRRLFSTSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAF 61
A+R + PRG +P R Q PS LFV GLS+ TT+ETL+++F
Sbjct: 552 AIRLELQGPRG--------------SPNARSQ--PSKTLFVKGLSEDTTEETLKESFDG- 594
Query: 62 GEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKPR 117
V A+IV RE+G SKGFGFV + + E A A E M+ +DG + +++AKP+
Sbjct: 595 --SVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 648
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
L L + T + L++ F E+ ++V + G SKG ++++ T A K E
Sbjct: 395 LLAKNLPYKVTQDELKEVFEDAAEI---RLV--SKDGKSKGIAYIEFKTEADAEKTFEEK 449
Query: 100 DGKFLDGWVIFVEY 113
G +DG I + Y
Sbjct: 450 QGTEIDGRSISLYY 463
>sp|P09405|NUCL_MOUSE Nucleolin OS=Mus musculus GN=Ncl PE=1 SV=2
Length = 707
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 57/85 (67%), Gaps = 3/85 (3%)
Query: 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
+++PS LFV GLS+ TT+ETL+++F V A+IV RE+G SKGFGFV + + E A
Sbjct: 564 RSQPSKTLFVKGLSEDTTEETLKESFEG---SVRARIVTDRETGSSKGFGFVDFNSEEDA 620
Query: 93 GKAIEGMDGKFLDGWVIFVEYAKPR 117
A E M+ +DG + +++AKP+
Sbjct: 621 KAAKEAMEDGEIDGNKVTLDWAKPK 645
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
L LS T++ L++ F + + ++V + G SKG ++++ + A K +E
Sbjct: 397 LLAKNLSFNITEDELKEVFE---DAMEIRLV--SQDGKSKGIAYIEFKSEADAEKNLEEK 451
Query: 100 DGKFLDGWVIFVEY 113
G +DG + + Y
Sbjct: 452 QGAEIDGRSVSLYY 465
>sp|Q4R4J7|NUCL_MACFA Nucleolin OS=Macaca fascicularis GN=NCL PE=2 SV=3
Length = 711
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 66/116 (56%), Gaps = 19/116 (16%)
Query: 2 ALRAAVAAPRGLRRLFSTSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAF 61
A+R + PRG SP + S +PS LFV GLS+ TT+ETL+++F
Sbjct: 553 AIRLELQGPRG-------SPNARS---------QPSKTLFVKGLSEDTTEETLKESFDG- 595
Query: 62 GEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKPR 117
V A+IV RE+G SKGFGFV + + E A A E M+ +DG + +++AKP+
Sbjct: 596 --SVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 649
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
L L + T + L++ F E+ ++V + G SKG ++++ T A K E
Sbjct: 396 LLAKNLPYKVTQDELKEVFEDAAEI---RLV--SKDGKSKGIAYIEFKTEADAEKTFEEK 450
Query: 100 DGKFLDGWVIFVEY 113
G +DG I + Y
Sbjct: 451 QGTEIDGRSISLYY 464
>sp|P13383|NUCL_RAT Nucleolin OS=Rattus norvegicus GN=Ncl PE=1 SV=3
Length = 713
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 57/85 (67%), Gaps = 3/85 (3%)
Query: 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
+++PS LFV GLS+ TT+ETL+++F V A+IV RE+G SKGFGFV + + E A
Sbjct: 570 RSQPSKTLFVKGLSEDTTEETLKESFEG---SVRARIVTDRETGSSKGFGFVDFNSEEDA 626
Query: 93 GKAIEGMDGKFLDGWVIFVEYAKPR 117
A E M+ +DG + +++AKP+
Sbjct: 627 KAAKEAMEDGEIDGNKVTLDWAKPK 651
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
L LS T++ L++ F + V ++V G SKG ++++ + A K +E
Sbjct: 399 LLAKNLSFNITEDELKEVFE---DAVEIRLVSQ--DGRSKGIAYIEFKSEADAEKNLEEK 453
Query: 100 DGKFLDGWVIFVEY 113
G +DG + + Y
Sbjct: 454 QGAEIDGRSVSLYY 467
>sp|Q9FZ84|RBG6_ARATH Glycine-rich RNA-binding protein 6, mitochondrial OS=Arabidopsis
thaliana GN=RBG6 PE=2 SV=1
Length = 155
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 49/75 (65%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
+ +FV GLS T E L++ F +FG++V A +V RESG S+GFGFV Y ++E A A++
Sbjct: 36 SKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQ 95
Query: 98 GMDGKFLDGWVIFVE 112
M K LDG +I V
Sbjct: 96 AMQNKELDGRIIGVH 110
>sp|Q03878|GRP1_DAUCA Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1
Length = 157
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 51/83 (61%)
Query: 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAG 93
AE FV GL+ T DE+L FS FG++ +KI+ RE+G S+GFGFV + ++
Sbjct: 2 AEVEYRCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMR 61
Query: 94 KAIEGMDGKFLDGWVIFVEYAKP 116
AIEGM+G+ LDG I V A+
Sbjct: 62 DAIEGMNGQELDGRNITVNEAQS 84
>sp|Q99070|GRP2_SORBI Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2 PE=2
SV=1
Length = 168
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 53/83 (63%)
Query: 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAG 93
A+ FV GL+ T +ETL F+ FG+V+ +K++ RE+G S+GFGFV +++ ++
Sbjct: 4 ADVEYRCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSML 63
Query: 94 KAIEGMDGKFLDGWVIFVEYAKP 116
AIE M+GK LDG I V A+
Sbjct: 64 DAIENMNGKELDGRNITVNQAQS 86
>sp|Q9C909|RBG5_ARATH Glycine-rich RNA-binding protein 5, mitochondrial OS=Arabidopsis
thaliana GN=RBG5 PE=2 SV=1
Length = 289
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 63/102 (61%), Gaps = 3/102 (2%)
Query: 15 RLFS--TSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKH 72
RLFS +S ++S + Q + S+ +FV G+S T + LR+ FS +GEVV AKI+
Sbjct: 9 RLFSQTSSHVTASSSMLQSIRCMSSSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVD 68
Query: 73 RESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYA 114
RE+G S+GF FV + + E A A++ +DG+ L G I V YA
Sbjct: 69 RETGRSRGFAFVTFTSTEEASNAMQ-LDGQDLHGRRIRVNYA 109
>sp|O14102|SAP49_SCHPO Spliceosome-associated protein 49 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=sap49 PE=3 SV=2
Length = 335
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 46/80 (57%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
NLFV L + L DTFSA G++V A V E+G SKG+GFV Y + E A AIE
Sbjct: 100 NLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEA 159
Query: 99 MDGKFLDGWVIFVEYAKPRQ 118
M+ +FL I V YA R+
Sbjct: 160 MNNQFLMNKPITVSYAFKRE 179
>sp|P15771|NUCL_CHICK Nucleolin OS=Gallus gallus GN=NCL PE=1 SV=1
Length = 694
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 54/81 (66%), Gaps = 3/81 (3%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
S LFV GLS+ TT+ETLR++F + A+IV R++G SKGFGFV +++ E A A
Sbjct: 552 SKTLFVRGLSEDTTEETLRESFEG---SISARIVTDRDTGSSKGFGFVDFSSPEDAKAAK 608
Query: 97 EGMDGKFLDGWVIFVEYAKPR 117
E M+ +DG + +++AKP+
Sbjct: 609 EAMEDGEIDGNKVTLDFAKPK 629
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
S L V+ LS ++ETL++ F + K+ ++ + G KG+ FV++ T E A +A+
Sbjct: 460 SKTLIVNNLSYAASEETLQELFK---KATSIKMPQNNQ-GRPKGYAFVEFPTAEDAKEAL 515
Query: 97 EGMDGKFLDGWVIFVEYAKP 116
+ ++G I +E++ P
Sbjct: 516 NSCNNTEIEGRAIRLEFSSP 535
Score = 35.8 bits (81), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
LFV L R T++ +++ F EV ++V ++E G SKG ++++ T A KA+E
Sbjct: 373 LFVKNLPYRVTEDEMKNVFENALEV---RLVLNKE-GSSKGMAYIEFKTEAEAEKALEEK 428
Query: 100 DGKFLDGWVIFVEY 113
G +DG + ++Y
Sbjct: 429 QGTEVDGRAMVIDY 442
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
+LFV L+ E LR F + ++ + R G SK FG+V + + E KA++
Sbjct: 282 SLFVKNLTPTKDYEELRTAIKEFFGKKNLQVSEVR-IGSSKRFGYVDFLSAEDMDKALQ- 339
Query: 99 MDGKFLDGWVIFVEYAKPRQ 118
++GK L G I +E AK ++
Sbjct: 340 LNGKKLMGLEIKLEKAKSKE 359
>sp|P10979|GRPA_MAIZE Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea
mays GN=RAB15 PE=1 SV=1
Length = 157
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 55/83 (66%)
Query: 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAG 93
A+ FV GL+ T++E+L + F+++GE++ +K++ RE+G S+GFGFV +++ +
Sbjct: 4 ADVEYRCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSML 63
Query: 94 KAIEGMDGKFLDGWVIFVEYAKP 116
AIE M+GK LDG I V A+
Sbjct: 64 DAIENMNGKELDGRNITVNQAQS 86
>sp|Q05966|GRP10_BRANA Glycine-rich RNA-binding protein 10 OS=Brassica napus GN=GRP10 PE=2
SV=1
Length = 169
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 50/83 (60%)
Query: 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAG 93
+E FV GL+ T D L TFS FGEV+ +KI+ RE+G S+GFGFV + ++
Sbjct: 2 SEVEYRCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMK 61
Query: 94 KAIEGMDGKFLDGWVIFVEYAKP 116
AI+ M+GK LDG I V A+
Sbjct: 62 DAIDEMNGKELDGRTITVNEAQS 84
>sp|Q09442|SF3B4_CAEEL Splicing factor 3B subunit 4 OS=Caenorhabditis elegans GN=sap-49
PE=1 SV=2
Length = 388
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHA-KIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
N+FV L ++ L DTFSAFG ++ KI++ +SG SKGF F+ +A+ EA+ A+E
Sbjct: 101 NIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALE 160
Query: 98 GMDGKFLDGWVIFVEYAKPRQ 118
M+G+FL I V YA R
Sbjct: 161 AMNGQFLCNRAITVSYAFKRD 181
Score = 36.2 bits (82), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
++V GL ++ ++ L + G VV + K R + +GFGFV++ E A AI+ +
Sbjct: 15 IYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKIL 74
Query: 100 DGKFLDGWVIFVEYAKPRQ 118
+ L G I V A +
Sbjct: 75 NMIKLYGKPIKVNKASAHE 93
>sp|P49310|GRP1_SINAL Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba PE=2 SV=1
Length = 166
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 48/76 (63%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
FV GL+ T D L FS +GEV+ +KI+ RE+G S+GFGFV + ++ AIEGM
Sbjct: 10 CFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGM 69
Query: 100 DGKFLDGWVIFVEYAK 115
+G+ LDG I V A+
Sbjct: 70 NGQDLDGRSITVNEAQ 85
>sp|P49311|GRP2_SINAL Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba PE=2 SV=1
Length = 169
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 49/76 (64%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
FV GL+ T + +L FS FGE+V +KI+ RE+G S+GFGFV + ++ AIEGM
Sbjct: 10 CFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGM 69
Query: 100 DGKFLDGWVIFVEYAK 115
+G+ LDG I V A+
Sbjct: 70 NGQDLDGRSITVNEAQ 85
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1
Length = 644
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
+A+ TN+++ + DE+L++ FS FG+ + K+++ +G SKGFGFV Y E A
Sbjct: 186 KAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHEDA 244
Query: 93 GKAIEGMDGKFLDGWVIFVEYAKPR 117
KA+E M+GK + G +IFV A+ +
Sbjct: 245 NKAVEEMNGKEISGKIIFVGRAQKK 269
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 50/80 (62%), Gaps = 2/80 (2%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+ FV + T EAA KAIE
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEK 157
Query: 99 MDGKFLDGWVIFVEYAKPRQ 118
M+G L+ +FV K R+
Sbjct: 158 MNGMLLNDRKVFVGRFKSRK 177
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL++ L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 294 VNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVT 351
Query: 98 GMDGKFLDGWVIFVEYAKPRQ 118
M+G+ + ++V A+ ++
Sbjct: 352 EMNGRIVGSKPLYVALAQRKE 372
>sp|P0CB38|PAB4L_HUMAN Polyadenylate-binding protein 4-like OS=Homo sapiens GN=PABPC4L
PE=2 SV=1
Length = 370
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 54/87 (62%), Gaps = 1/87 (1%)
Query: 31 RPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLE 90
R +A TN+++ DE L+D FS +G+ + K++ SG SKGFGFV + + E
Sbjct: 183 RSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTD-SSGKSKGFGFVSFDSHE 241
Query: 91 AAGKAIEGMDGKFLDGWVIFVEYAKPR 117
AA KA+E M+G+ ++G +IFV A+ +
Sbjct: 242 AAKKAVEEMNGRDINGQLIFVGRAQKK 268
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 49/81 (60%), Gaps = 2/81 (2%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++TL + FSAFG+++ +K++ + SKG+ FV + AA +AIE
Sbjct: 99 NVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG--SKGYAFVHFQNQSAADRAIEE 156
Query: 99 MDGKFLDGWVIFVEYAKPRQP 119
M+GK L G +FV K R+
Sbjct: 157 MNGKLLKGCKVFVGRFKNRKD 177
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 30 QRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATL 89
+R + L++ L DE LR+ FS+FG + K+++ E G SKGFG + +++
Sbjct: 285 ERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQ--EEGQSKGFGLICFSSP 342
Query: 90 EAAGKAIEGMDGKFL 104
E A KA+ M+G+ L
Sbjct: 343 EDATKAMTEMNGRIL 357
>sp|Q5R8F7|PABP1_PONAB Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1
Length = 636
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+GFV + T EAA +AIE
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEK 157
Query: 99 MDGKFLDGWVIFVEYAKPRQ 118
M+G L+ +FV K R+
Sbjct: 158 MNGMLLNDRKVFVGRFKSRK 177
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + DE L+D F FG + K++ ESG SKGFGFV + E A KA++
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVD 249
Query: 98 GMDGKFLDGWVIFVEYAK 115
M+GK L+G I+V A+
Sbjct: 250 EMNGKELNGKQIYVGRAQ 267
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL+V L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 294 VNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVT 351
Query: 98 GMDGKFLDGWVIFVEYAKPRQ 118
M+G+ + ++V A+ ++
Sbjct: 352 EMNGRIVATKPLYVALAQRKE 372
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2
Length = 636
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+GFV + T EAA +AIE
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEK 157
Query: 99 MDGKFLDGWVIFVEYAKPRQ 118
M+G L+ +FV K R+
Sbjct: 158 MNGMLLNDRKVFVGRFKSRK 177
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + DE L++ F FG + K++ ESG SKGFGFV + E A KA++
Sbjct: 191 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVD 249
Query: 98 GMDGKFLDGWVIFVEYAK 115
M+GK L+G I+V A+
Sbjct: 250 EMNGKELNGKQIYVGRAQ 267
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL+V L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 294 VNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVT 351
Query: 98 GMDGKFLDGWVIFVEYAKPRQ 118
M+G+ + ++V A+ ++
Sbjct: 352 EMNGRIVATKPLYVALAQRKE 372
>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2
Length = 636
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+GFV + T EAA +AIE
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEK 157
Query: 99 MDGKFLDGWVIFVEYAKPRQ 118
M+G L+ +FV K R+
Sbjct: 158 MNGMLLNDRKVFVGRFKSRK 177
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + DE L+D F FG + K++ ESG SKGFGFV + E A KA++
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVD 249
Query: 98 GMDGKFLDGWVIFVEYAK 115
M+GK L+G I+V A+
Sbjct: 250 EMNGKELNGKQIYVGRAQ 267
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL+V L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 294 VNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVT 351
Query: 98 GMDGKFLDGWVIFVEYAKPRQ 118
M+G+ + ++V A+ ++
Sbjct: 352 EMNGRIVATKPLYVALAQRKE 372
>sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1
Length = 636
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+GFV + T EAA +AIE
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEK 157
Query: 99 MDGKFLDGWVIFVEYAKPRQ 118
M+G L+ +FV K R+
Sbjct: 158 MNGMLLNDRKVFVGRFKSRK 177
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + DE L+D F FG + K++ ESG SKGFGFV + E A KA++
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVD 249
Query: 98 GMDGKFLDGWVIFVEYAK 115
M+GK L+G I+V A+
Sbjct: 250 EMNGKELNGKQIYVGRAQ 267
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL+V L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 294 VNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVT 351
Query: 98 GMDGKFLDGWVIFVEYAKPRQ 118
M+G+ + ++V A+ ++
Sbjct: 352 EMNGRIVATKPLYVALAQRKE 372
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2
SV=1
Length = 636
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+GFV + T EAA +AIE
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEK 157
Query: 99 MDGKFLDGWVIFVEYAKPRQ 118
M+G L+ +FV K R+
Sbjct: 158 MNGMLLNDRKVFVGRFKSRK 177
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + DE L++ F FG + K++ ESG SKGFGFV + E A KA++
Sbjct: 191 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVD 249
Query: 98 GMDGKFLDGWVIFVEYAKPR 117
M+GK L+G I+V A+ +
Sbjct: 250 EMNGKELNGKQIYVGRAQKK 269
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL+V L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 294 VNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVT 351
Query: 98 GMDGKFLDGWVIFVEYAKPRQ 118
M+G+ + ++V A+ ++
Sbjct: 352 EMNGRIVATKPLYVALAQRKE 372
>sp|Q03250|RBG7_ARATH Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana GN=RBG7
PE=1 SV=1
Length = 176
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 48/76 (63%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
FV GL+ T D L F+ +G+V+ +KI+ RE+G S+GFGFV + +A AIEGM
Sbjct: 10 CFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGM 69
Query: 100 DGKFLDGWVIFVEYAK 115
+G+ LDG I V A+
Sbjct: 70 NGQDLDGRSITVNEAQ 85
>sp|P39697|RT19_ARATH 40S ribosomal protein S19, mitochondrial OS=Arabidopsis thaliana
GN=RPS19 PE=1 SV=2
Length = 212
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 57/87 (65%), Gaps = 2/87 (2%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
ST L++ GLS T + +L+D FS+F V A+++ ++ +G S+G+GFV + + ++A AI
Sbjct: 30 STKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAI 89
Query: 97 EGMDGKFLDGWVIFVEYAKPRQPPTLP 123
M+G+ L+G+ I V AK P+LP
Sbjct: 90 SAMNGQELNGFNISVNVAK--DWPSLP 114
>sp|P20965|PABPA_XENLA Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-a
PE=1 SV=3
Length = 633
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+GFV + T EAA +AI+
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIDK 157
Query: 99 MDGKFLDGWVIFVEYAKPRQ 118
M+G L+ +FV K R+
Sbjct: 158 MNGMLLNDRKVFVGRFKSRK 177
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ DE L++ F +G + K++ ++G SKGFGFV + E A KA++
Sbjct: 191 TNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTD-DNGKSKGFGFVSFERHEDAQKAVD 249
Query: 98 GMDGKFLDGWVIFVEYAKPR 117
M+GK ++G +FV A+ +
Sbjct: 250 EMNGKDMNGKSMFVGRAQKK 269
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL+V L DE LR F FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 294 VNLYVKNLDDGIDDERLRKEFLPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVT 351
Query: 98 GMDGKFLDGWVIFVEYAKPRQ 118
M+G+ + ++V A+ ++
Sbjct: 352 EMNGRIVATKPLYVALAQRKE 372
>sp|Q98SP8|EPABA_XENLA Embryonic polyadenylate-binding protein A OS=Xenopus laevis
GN=epabp-a PE=1 SV=2
Length = 629
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + D+ LR+ FSAFG + K++ +SG S+GFGFV Y E A KA+
Sbjct: 191 TNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD-DSGRSRGFGFVNYGNHEEAQKAVS 249
Query: 98 GMDGKFLDGWVIFVEYAKPR 117
M+GK ++G +I+V A+ R
Sbjct: 250 EMNGKEVNGRMIYVGRAQKR 269
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L + ++ L DTFSAFG ++ K+V E G S+G+GFV + T EAA +AI+
Sbjct: 100 NVFIKNLDESIDNKALYDTFSAFGNILSCKVVCD-EHG-SRGYGFVHFETHEAANRAIQT 157
Query: 99 MDGKFLDGWVIFVEYAKPRQ 118
M+G L+ +FV + K R+
Sbjct: 158 MNGMLLNDRKVFVGHFKSRR 177
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL+V L D+ LR F +G + AK++ E G+SKGFGFV +++ E A KA+
Sbjct: 294 VNLYVKNLDDGIDDDRLRKEFLPYGTITSAKVMT--EGGHSKGFGFVCFSSPEEATKAVT 351
Query: 98 GMDGKFLDGWVIFVEYAKPRQ 118
M+G+ + ++V A+ ++
Sbjct: 352 EMNGRIVSTKPLYVALAQRKE 372
>sp|Q6IP09|PABPB_XENLA Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-b
PE=2 SV=1
Length = 633
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+GFV + T EAA +AI+
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIDK 157
Query: 99 MDGKFLDGWVIFVEYAKPRQ 118
M+G L+ +FV K R+
Sbjct: 158 MNGMLLNDRKVFVGRFKSRK 177
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL+V L DE LR F+ FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 294 VNLYVKNLDDGIDDERLRKEFTPFGSITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVT 351
Query: 98 GMDGKFLDGWVIFVEYAKPRQ 118
M+G+ + ++V A+ ++
Sbjct: 352 EMNGRIVATKPLYVALAQRKE 372
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + DE L++ F +G + K++ + G S+GFGFV + E A KA++
Sbjct: 191 TNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTD-DHGKSRGFGFVSFERHEDAQKAVD 249
Query: 98 GMDGKFLDGWVIFVEYAKPR 117
M+GK L+G IFV A+ +
Sbjct: 250 DMNGKDLNGKAIFVGRAQKK 269
>sp|Q1DXH0|PABP_COCIM Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Coccidioides immitis (strain RS) GN=PAB1 PE=3 SV=1
Length = 768
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 48/81 (59%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN++V + + TT+E RD F FGE+ A + + ESG S+GFGFV + + + A A+E
Sbjct: 236 TNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVE 295
Query: 98 GMDGKFLDGWVIFVEYAKPRQ 118
++ K G ++V A+ +
Sbjct: 296 ALNDKDFKGQKLYVGRAQKKH 316
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L ++ L DTF+AFG ++ K+ + E G SKG+GFV Y T EAA AI+
Sbjct: 144 NVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAAQNAIKH 202
Query: 99 MDGKFLDGWVIFV 111
++G L+ +FV
Sbjct: 203 VNGMLLNDKKVFV 215
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 52/130 (40%), Gaps = 52/130 (40%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVK-------------------------- 71
NL++ LS DE LR+ FS++G + AK+++
Sbjct: 340 VNLYIKNLSDDIDDEKLRELFSSYGTITSAKVMRDFAPESTSDSEKEAKKDSKEPETKEE 399
Query: 72 --------------HRES------------GYSKGFGFVKYATLEAAGKAIEGMDGKFLD 105
++E+ G SKGFGFV +++ + A KA+ M+ + +
Sbjct: 400 EPKDEAGDNAENKDNKENKAESKKSEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVH 459
Query: 106 GWVIFVEYAK 115
G ++V A+
Sbjct: 460 GKPLYVALAQ 469
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 34/70 (48%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
S +L+V L T+ L + FS+ G+V ++ + + S G+ +V Y +A+
Sbjct: 54 SASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERAL 113
Query: 97 EGMDGKFLDG 106
E ++ + G
Sbjct: 114 EDLNYTLIKG 123
>sp|P70372|ELAV1_MOUSE ELAV-like protein 1 OS=Mus musculus GN=Elavl1 PE=1 SV=2
Length = 326
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 49/79 (62%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TNL V+ L + T E LR FS+ GEV AK+++ + +G+S G+GFV Y T + A +AI
Sbjct: 20 TNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIS 79
Query: 98 GMDGKFLDGWVIFVEYAKP 116
++G L I V YA+P
Sbjct: 80 TLNGLRLQSKTIKVSYARP 98
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 52/98 (53%), Gaps = 7/98 (7%)
Query: 6 AVAAPRGLRRLFSTSPFSSSLNPPQRPQAE--PSTNLFVSGLSKRTTDETLRDTFSAFGE 63
A++ GLR T S + RP +E NL++SGL + T + + D FS FG
Sbjct: 77 AISTLNGLRLQSKTIKVSYA-----RPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGR 131
Query: 64 VVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDG 101
+++++++ + +G S+G F+++ A +AI +G
Sbjct: 132 IINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
+F+ L + + L F FG V + K+++ + KGFGFV E A AI +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 100 DGKFLDGWVIFVEY 113
+G L ++ V +
Sbjct: 306 NGYRLGDKILQVSF 319
>sp|P31209|PABP_SCHPO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pab1 PE=1 SV=2
Length = 653
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NLF+ L DE L+ FSAFG + AKI+ E G SKGFGFV Y T E A KA+
Sbjct: 364 VNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTD-EQGKSKGFGFVCYTTPEEANKAVT 422
Query: 98 GMDGKFLDGWVIFVEYAKPRQ 118
M+ + L G ++V A+ ++
Sbjct: 423 EMNQRMLAGKPLYVALAQRKE 443
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L ++ L DTFSAFG+++ K+ E G +KG+GFV + ++E+A AIE
Sbjct: 169 NVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVD-ELGNAKGYGFVHFDSVESANAAIEH 227
Query: 99 MDGKFLDGWVIFV 111
++G L+ ++V
Sbjct: 228 VNGMLLNDKKVYV 240
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ L T++ D F FGE+ +VK ++ +GFGFV YA E A KA++
Sbjct: 261 TNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKD-QNDKPRGFGFVNYANHECAQKAVD 319
Query: 98 GMDGKFLDGWVIFVEYAKPRQ 118
++ K G ++V A+ +
Sbjct: 320 ELNDKEYKGKKLYVGRAQKKH 340
>sp|Q54BM2|PAP1A_DICDI Polyadenylate-binding protein 1-A OS=Dictyostelium discoideum
GN=pabpc1A PE=1 SV=1
Length = 565
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 51/86 (59%), Gaps = 4/86 (4%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K + L DTFSAFG ++ K+V + SKGFGFV Y T E+A KAI
Sbjct: 99 NVFIKNLDKGIDHKALYDTFSAFGNILSCKVVTD-DGNSSKGFGFVHYETQESADKAIAK 157
Query: 99 MDGKFLDGWVIFV---EYAKPRQPPT 121
++G ++G +FV + +K R PT
Sbjct: 158 VNGMMINGQKVFVGPFKSSKERGQPT 183
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL++ + ++ LR+ FS FG + A ++K ++ SKGFGFV Y + A +A+
Sbjct: 284 VNLYIKNIDDSIDNDKLREVFSQFGTITSAIVMKDDKATTSKGFGFVCYTAPDEATRAVT 343
Query: 98 GMDGKFLDGWVIFVEYAK 115
M+G+ + ++V A+
Sbjct: 344 EMNGRMIGTKPLYVALAQ 361
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 7/116 (6%)
Query: 6 AVAAPRGL----RRLFSTSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAF 61
A+A G+ +++F PF SS Q P TN+F LS+ + L++ +
Sbjct: 154 AIAKVNGMMINGQKVF-VGPFKSSKERGQ-PTEVKFTNVFFKNLSEDVGPDQLKELLQQY 211
Query: 62 GEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKPR 117
GE+ + I+ + G SKGFGF + + EAA +E +GK G I+ A+ +
Sbjct: 212 GEITNITIMAD-DKGKSKGFGFANFESAEAAKNVVENENGKIFHGKPIYAGRAQKK 266
>sp|Q2GSX8|PABP_CHAGB Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 /
DSM 1962 / NBRC 6347 / NRRL 1970) GN=PAB1 PE=3 SV=1
Length = 783
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN++V +S TDE RD F+ +G+V + + + E G S+GFGFV + T E A KA+E
Sbjct: 246 TNIYVKNISLEATDEEFRDLFAKYGDVTSSSLARDSE-GKSRGFGFVNFTTHECAAKAVE 304
Query: 98 GMDGKFLDGWVIFVEYAKPRQ 118
++GK G ++V A+ +
Sbjct: 305 ELNGKEFRGQDLYVGRAQKKH 325
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L ++ L DTF+AFG ++ K+ + E+G SKG+GFV Y T EAA +AI+
Sbjct: 154 NVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQD-ENGNSKGYGFVHYETDEAAAQAIKH 212
Query: 99 MDGKFLDGWVIFVEYAKPRQ 118
++ L+ ++V Y P++
Sbjct: 213 VNNMLLNEKKVYVGYHIPKK 232
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 47/122 (38%), Gaps = 44/122 (36%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKH------------------------- 72
NL++ L+ D+ LR FS +G + AK+++
Sbjct: 349 VNLYIKNLADDIDDDKLRQMFSEYGPITSAKVMRDAVTEGSAEEETEGKDKENKKEGEQA 408
Query: 73 -------------------RESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEY 113
R G SKGFGFV ++ + A KA+ M+ + ++G ++V
Sbjct: 409 AEAEGEAEGAEKKTEKKGDRRLGKSKGFGFVCFSNPDDATKAVAEMNQRMIEGKPLYVAL 468
Query: 114 AK 115
A+
Sbjct: 469 AQ 470
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 35/75 (46%)
Query: 32 PQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEA 91
P + S +L+V L T+ L + FS G V ++ + + S G+ +V Y +
Sbjct: 59 PHPQSSASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDTITRRSLGYAYVNYNSTSD 118
Query: 92 AGKAIEGMDGKFLDG 106
KA+E ++ + G
Sbjct: 119 GEKALEELNYTLIKG 133
>sp|P21187|PABP_DROME Polyadenylate-binding protein OS=Drosophila melanogaster GN=pAbp
PE=1 SV=3
Length = 634
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 60/118 (50%), Gaps = 10/118 (8%)
Query: 10 PRGLRRLFSTSPFSSSLNPPQR---PQAEPST------NLFVSGLSKRTTDETLRDTFSA 60
P R T F N P R Q +PS N+F+ L + ++ + DTFSA
Sbjct: 53 PADAERALDTMNFDLVRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSA 112
Query: 61 FGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKPRQ 118
FG ++ K+ E G SKG+GFV + T EAA +I+ ++G L+G ++V PR+
Sbjct: 113 FGNILSCKVATD-EKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRK 169
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 51/81 (62%), Gaps = 2/81 (2%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN++V ++ DE L++ F +G++ K++ +E G SKGFGFV + T EAA A++
Sbjct: 183 TNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMS-KEDGKSKGFGFVAFETTEAAEAAVQ 241
Query: 98 GMDGKFL-DGWVIFVEYAKPR 117
++GK + +G ++V A+ +
Sbjct: 242 ALNGKDMGEGKSLYVARAQKK 262
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL+V L D+ LR FS +G + AK++ E G SKGFGFV + A A+
Sbjct: 287 VNLYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTD-EEGRSKGFGFVCFNAASEATCAVT 345
Query: 98 GMDGKFLDGWVIFVEYAKPRQ 118
++G+ + ++V A+ ++
Sbjct: 346 ELNGRVVGSKPLYVALAQRKE 366
>sp|Q6DEY7|EPAB_XENTR Embryonic polyadenylate-binding protein OS=Xenopus tropicalis
GN=epabp PE=2 SV=1
Length = 629
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + D+ LR+ FSAFG + K++ ++G S+GFGFV Y E A KA+
Sbjct: 191 TNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD-DTGRSRGFGFVNYGNHEEAQKAVS 249
Query: 98 GMDGKFLDGWVIFVEYAKPR 117
M+GK ++G +I+V A+ R
Sbjct: 250 EMNGKEVNGRMIYVGRAQKR 269
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L + ++ L DTFSAFG ++ K+V E G S+G+GFV + T EAA +AI+
Sbjct: 100 NVFIKNLDESIDNKALYDTFSAFGNILSCKVVCD-EHG-SRGYGFVHFETQEAANRAIQT 157
Query: 99 MDGKFLDGWVIFVEYAKPRQ 118
M+G L+ +FV + K R+
Sbjct: 158 MNGMLLNDRKVFVGHFKSRR 177
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 48/81 (59%), Gaps = 2/81 (2%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL+V L D+ LR FS +G + AK++ E G+SKGFGFV +++ E A KA+
Sbjct: 294 VNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMT--EGGHSKGFGFVCFSSPEEATKAVT 351
Query: 98 GMDGKFLDGWVIFVEYAKPRQ 118
M+G+ + ++V A+ ++
Sbjct: 352 EMNGRIVSTKPLYVALAQRKE 372
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2
PE=1 SV=1
Length = 629
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L + + L DTFS+FG +V K+ SG SKG+GFV+YA E+A KAIE
Sbjct: 125 NIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVD-SSGQSKGYGFVQYANEESAQKAIEK 183
Query: 99 MDGKFLDGWVIFV 111
++G L+ ++V
Sbjct: 184 LNGMLLNDKQVYV 196
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN++V L++ TTD+ L++ F +G++ A ++K E G SKGFGFV + + A +A+E
Sbjct: 215 TNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGE-GKSKGFGFVNFENADDAARAVE 273
Query: 98 GMDGKFLDGWVIFVEYAKPR 117
++G D +V A+ +
Sbjct: 274 SLNGHKFDDKEWYVGRAQKK 293
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
S+NL+V L +DE L++ FS FG V +K+++ +G SKG GFV +AT E A +A+
Sbjct: 317 SSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRD-PNGTSKGSGFVAFATPEEATEAM 375
Query: 97 EGMDGKFLDGWVIFVEYAKPRQ 118
+ GK ++ ++V A+ ++
Sbjct: 376 SQLSGKMIESKPLYVAIAQRKE 397
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
+T+L+V L TD L D F G VV ++ + + S G+G+V + + A +AI
Sbjct: 35 NTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAI 94
Query: 97 EGMDGKFLDGWVIFVEYA 114
+ ++ L G I V Y+
Sbjct: 95 QELNYIPLYGKPIRVMYS 112
>sp|Q10422|YDC1_SCHPO Uncharacterized RNA-binding protein C25G10.01
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC25G10.01 PE=1 SV=1
Length = 297
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 57/96 (59%), Gaps = 6/96 (6%)
Query: 30 QRPQAEPS------TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGF 83
+ PQ+ P +LFVSG++ R ++ L+ FS FG V H +I++ + S+GFGF
Sbjct: 87 KEPQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGF 146
Query: 84 VKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKPRQP 119
+ ++T+E A AI+ ++ + G V+ V+ AK +P
Sbjct: 147 LSFSTVEEATSAIDNLNSQEFYGRVLNVQKAKRSRP 182
>sp|Q28IQ9|CIRBP_XENTR Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp
PE=2 SV=1
Length = 166
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 47/75 (62%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
LFV GL+ TT+E+L FS +G+V +VK RES S+GFGFV + E A A+ M
Sbjct: 8 LFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAM 67
Query: 100 DGKFLDGWVIFVEYA 114
+GK +DG I V+ A
Sbjct: 68 NGKSVDGRQIRVDQA 82
>sp|Q15717|ELAV1_HUMAN ELAV-like protein 1 OS=Homo sapiens GN=ELAVL1 PE=1 SV=2
Length = 326
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 49/79 (62%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TNL V+ L + T + LR FS+ GEV AK+++ + +G+S G+GFV Y T + A +AI
Sbjct: 20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIN 79
Query: 98 GMDGKFLDGWVIFVEYAKP 116
++G L I V YA+P
Sbjct: 80 TLNGLRLQSKTIKVSYARP 98
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 31 RPQAE--PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYAT 88
RP +E NL++SGL + T + + D FS FG +++++++ + +G S+G F+++
Sbjct: 97 RPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDK 156
Query: 89 LEAAGKAIEGMDG 101
A +AI +G
Sbjct: 157 RSEAEEAITSFNG 169
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
+F+ L + + L F FG V + K+++ + KGFGFV E A AI +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 100 DGKFLDGWVIFVEY 113
+G L ++ V +
Sbjct: 306 NGYRLGDKILQVSF 319
>sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2
Length = 631
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 50/80 (62%), Gaps = 2/80 (2%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+FV L K ++ L DT SAFG ++ +V E+G SKG+GFV + T EAA +AI+
Sbjct: 100 NIFVKNLDKSINNKALYDTVSAFGNILSCNVVCD-ENG-SKGYGFVHFETHEAAERAIKK 157
Query: 99 MDGKFLDGWVIFVEYAKPRQ 118
M+G L+G +FV K R+
Sbjct: 158 MNGMLLNGRKVFVGQFKSRK 177
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+++ + DE L+D F FG + K++ ESG SKGFGFV + E A KA++
Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 99 MDGKFLDGWVIFVEYAKPR 117
M+GK L+G I+V A+ +
Sbjct: 251 MNGKELNGKQIYVGRAQKK 269
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL+V L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 294 VNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVT 351
Query: 98 GMDGKFLDGWVIFVEYAKPRQ 118
M+G+ + ++V A+ ++
Sbjct: 352 EMNGRIVATKPLYVALAQRKE 372
>sp|Q6GR16|EPABB_XENLA Embryonic polyadenylate-binding protein B OS=Xenopus laevis
GN=epabp-b PE=2 SV=1
Length = 629
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L ++ L DTFSAFG+++ K+V E G S+G+GFV + T EAA +AI+
Sbjct: 100 NVFIKNLDDSIDNKALYDTFSAFGDILSCKVVCD-EYG-SRGYGFVHFETQEAANRAIQT 157
Query: 99 MDGKFLDGWVIFVEYAKPRQ 118
M+G L+ +FV + K R+
Sbjct: 158 MNGMLLNDRKVFVGHFKSRR 177
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + D+ L++ FSAFG + K++ SG S+GFGFV Y E A KA+
Sbjct: 191 TNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMD-NSGRSRGFGFVNYGNHEEAQKAVT 249
Query: 98 GMDGKFLDGWVIFVEYAKPR 117
M+GK ++G +++V A+ R
Sbjct: 250 EMNGKEVNGRMVYVGRAQKR 269
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL+V L D+ LR FS +G + K++ E G+SKGFGFV +++ E A KA+
Sbjct: 294 VNLYVKNLDDGIDDDRLRKEFSPYGTITSTKVMT--EGGHSKGFGFVCFSSPEEATKAVT 351
Query: 98 GMDGKFLDGWVIFVEYAKPRQ 118
M+G+ + ++V A+ ++
Sbjct: 352 EMNGRIVSTKPLYVALAQRKE 372
>sp|Q0U1G2|PABP_PHANO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 /
FGSC 10173) GN=PAB1 PE=3 SV=3
Length = 744
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L ++ L DTF+AFG ++ K+ + E G SKG+GFV Y T EAA AI+
Sbjct: 137 NVFIKNLDHAIDNKALHDTFAAFGNILSCKVAQD-ELGNSKGYGFVHYETAEAANNAIKH 195
Query: 99 MDGKFLDGWVIFVEYAKPRQ 118
++G L+ +FV + P++
Sbjct: 196 VNGMLLNEKKVFVGHHIPKK 215
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN++V + TDE R+ F G++ A I + + G S+GFGFV Y EAA A++
Sbjct: 229 TNIYVKNIDLDVTDEDFRELFEKHGDITSASIARD-DQGKSRGFGFVNYIRHEAAAVAVD 287
Query: 98 GMDGKFLDGWVIFVEYAKPRQ 118
++ G ++V A+ +
Sbjct: 288 HLNDIEFKGQKLYVGRAQKKH 308
Score = 36.2 bits (82), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIV 70
NL++ L+ DE LRD F+ FG + AK++
Sbjct: 332 VNLYIKNLNDDVDDEKLRDMFTPFGTITSAKVI 364
Score = 36.2 bits (82), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 36/70 (51%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
S +L+V L T+ L + FS+ G+V ++ + + S G+ +V Y + E KA+
Sbjct: 47 SASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKAL 106
Query: 97 EGMDGKFLDG 106
E ++ + G
Sbjct: 107 EELNYTVIKG 116
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 26/40 (65%)
Query: 76 GYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAK 115
G SKGFGFV ++ + A KA+ M+ K ++G ++V A+
Sbjct: 422 GKSKGFGFVCFSNPDEATKAVTEMNQKMIEGKPLYVALAQ 461
>sp|P20397|NUCL_XENLA Nucleolin OS=Xenopus laevis GN=ncl PE=2 SV=3
Length = 651
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 55/81 (67%), Gaps = 3/81 (3%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
S LFV GLS+ TT+ETL++ AF V+A+IV R++G SKGFGFV ++T E A A
Sbjct: 502 SKTLFVRGLSEDTTEETLKE---AFDGSVNARIVTDRDTGASKGFGFVDFSTAEDAKAAK 558
Query: 97 EGMDGKFLDGWVIFVEYAKPR 117
E M+ +DG + +++AKP+
Sbjct: 559 EAMEDGEIDGNKVTLDFAKPK 579
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 14/95 (14%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVK--HRESGYSKGFGFVKYATLEAAGK 94
S LFV + TT E L++ F +AK ++ + G +KG +V+++ + A K
Sbjct: 324 SRTLFVKNIPYSTTVEELQEIFE------NAKDIRIPTGKDGSNKGIAYVEFSNEDEANK 377
Query: 95 AIEGMDGKFLDGWVIFVEYAKPRQPPTLPSQNNTN 129
A+E G ++G IFV++ + SQN+ N
Sbjct: 378 ALEEKQGAEIEGRSIFVDFTGEK------SQNSGN 406
Score = 36.2 bits (82), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 44/75 (58%), Gaps = 5/75 (6%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
L V+ LS T+++LR+ F + +I +++ G +KGF F+++++ E A A++
Sbjct: 417 LVVNNLSYSATEDSLREVFE---KATSIRIPQNQ--GRAKGFAFIEFSSAEDAKDAMDSC 471
Query: 100 DGKFLDGWVIFVEYA 114
+ ++G I +E++
Sbjct: 472 NNTEIEGRSIRLEFS 486
>sp|Q7S6N6|PABP_NEUCR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=pab-1 PE=3 SV=1
Length = 764
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN++V ++ TDE R+ F+ FGEV + + + +E G S+GFGFV + T EAA +A++
Sbjct: 241 TNVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQE-GKSRGFGFVNFTTHEAAAQAVD 299
Query: 98 GMDGKFLDGWVIFVEYAKPRQ 118
++GK G ++V A+ +
Sbjct: 300 ELNGKDFRGQDLYVGRAQKKH 320
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L ++ L DTF+AFG ++ K+ + E G SKG+GFV Y T EAA +AI+
Sbjct: 149 NIFIKNLDAAIDNKALHDTFAAFGNILSCKVAQD-EHGNSKGYGFVHYETDEAASQAIKH 207
Query: 99 MDGKFLDGWVIFVEYAKPRQ 118
++G L+ ++V + P++
Sbjct: 208 VNGMLLNEKKVYVGHHIPKK 227
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 47/118 (39%), Gaps = 40/118 (33%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKH------------------------- 72
NL++ L D+ LR FS +G + AK+++
Sbjct: 344 VNLYIKNLGDDVDDDKLRAMFSEYGPITSAKVMRDSLIEGSEEKDEKDKENKKEGETKEE 403
Query: 73 ---------------RESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAK 115
R+ G SKGFGFV ++ + A KA+ M+ + +DG ++V A+
Sbjct: 404 EQNEGSEKKTEKKGDRKLGKSKGFGFVCFSNPDDATKAVTEMNQRMVDGKPLYVALAQ 461
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 34/72 (47%)
Query: 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGK 94
+ S +L+V L T+ L + FS G V ++ + + S G+ +V Y T K
Sbjct: 57 QASASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEK 116
Query: 95 AIEGMDGKFLDG 106
A+E ++ + G
Sbjct: 117 ALEELNYTLIKG 128
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,118,034
Number of Sequences: 539616
Number of extensions: 2150355
Number of successful extensions: 7034
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 254
Number of HSP's that attempted gapping in prelim test: 5327
Number of HSP's gapped (non-prelim): 1613
length of query: 135
length of database: 191,569,459
effective HSP length: 100
effective length of query: 35
effective length of database: 137,607,859
effective search space: 4816275065
effective search space used: 4816275065
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)