Query 032702
Match_columns 135
No_of_seqs 112 out of 1649
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 04:51:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032702.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032702hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03134 glycine-rich RNA-bind 99.9 2.9E-20 6.3E-25 121.0 15.5 88 34-121 31-118 (144)
2 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 3.9E-18 8.5E-23 125.3 14.6 85 35-119 267-351 (352)
3 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 9.2E-18 2E-22 123.3 11.5 84 36-119 2-85 (352)
4 TIGR01659 sex-lethal sex-letha 99.8 7.9E-18 1.7E-22 123.3 11.0 86 33-118 103-188 (346)
5 KOG0122 Translation initiation 99.8 2.9E-17 6.3E-22 112.3 12.0 84 34-117 186-269 (270)
6 PF00076 RRM_1: RNA recognitio 99.7 3.2E-17 7E-22 93.7 9.9 70 40-110 1-70 (70)
7 KOG0149 Predicted RNA-binding 99.7 8.8E-17 1.9E-21 109.4 9.1 81 35-116 10-90 (247)
8 KOG4207 Predicted splicing fac 99.7 1.9E-16 4.1E-21 106.1 8.7 87 32-118 8-94 (256)
9 TIGR01645 half-pint poly-U bin 99.7 1.1E-15 2.5E-20 118.1 13.9 86 35-120 202-287 (612)
10 TIGR01659 sex-lethal sex-letha 99.7 9.2E-16 2E-20 112.5 12.7 84 36-119 192-277 (346)
11 PF14259 RRM_6: RNA recognitio 99.7 1.1E-15 2.5E-20 87.6 10.0 70 40-110 1-70 (70)
12 KOG0107 Alternative splicing f 99.7 4.8E-16 1E-20 101.6 8.0 80 35-119 8-87 (195)
13 TIGR01645 half-pint poly-U bin 99.7 1E-15 2.2E-20 118.4 10.8 82 35-116 105-186 (612)
14 KOG0113 U1 small nuclear ribon 99.7 1.8E-15 3.9E-20 106.1 10.5 85 33-117 97-181 (335)
15 TIGR01642 U2AF_lg U2 snRNP aux 99.7 4.1E-15 9E-20 114.1 13.5 84 35-118 293-376 (509)
16 TIGR01628 PABP-1234 polyadenyl 99.6 2.1E-15 4.6E-20 117.1 11.6 81 39-119 2-82 (562)
17 KOG0117 Heterogeneous nuclear 99.6 2.5E-15 5.3E-20 110.3 10.8 87 31-117 77-164 (506)
18 TIGR01622 SF-CC1 splicing fact 99.6 8.2E-15 1.8E-19 111.2 13.1 85 34-119 86-170 (457)
19 KOG0125 Ataxin 2-binding prote 99.6 3.6E-15 7.8E-20 105.8 9.8 85 32-118 91-175 (376)
20 KOG0148 Apoptosis-promoting RN 99.6 3.6E-15 7.9E-20 103.5 9.2 88 32-119 57-144 (321)
21 TIGR01622 SF-CC1 splicing fact 99.6 9.6E-15 2.1E-19 110.8 12.4 80 37-116 186-265 (457)
22 PLN03120 nucleic acid binding 99.6 9E-15 1.9E-19 102.2 11.2 77 37-117 4-80 (260)
23 TIGR01648 hnRNP-R-Q heterogene 99.6 5.9E-15 1.3E-19 113.8 11.1 81 34-115 55-136 (578)
24 TIGR01628 PABP-1234 polyadenyl 99.6 9E-15 2E-19 113.6 11.0 84 34-118 282-365 (562)
25 KOG0121 Nuclear cap-binding pr 99.6 3.5E-15 7.6E-20 93.1 6.9 84 35-118 34-117 (153)
26 KOG0111 Cyclophilin-type pepti 99.6 9.7E-16 2.1E-20 103.7 4.8 88 34-121 7-94 (298)
27 PLN03213 repressor of silencin 99.6 7.7E-15 1.7E-19 109.3 9.7 80 34-117 7-88 (759)
28 smart00362 RRM_2 RNA recogniti 99.6 3.1E-14 6.8E-19 80.8 9.6 72 39-112 1-72 (72)
29 KOG0126 Predicted RNA-binding 99.6 3.7E-16 8.1E-21 102.8 1.6 81 35-115 33-113 (219)
30 KOG0108 mRNA cleavage and poly 99.6 1.8E-14 3.9E-19 107.6 8.2 82 38-119 19-100 (435)
31 smart00360 RRM RNA recognition 99.6 6.1E-14 1.3E-18 79.3 8.7 71 42-112 1-71 (71)
32 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.5 2E-13 4.4E-18 104.4 13.8 79 34-117 272-351 (481)
33 COG0724 RNA-binding proteins ( 99.5 1.8E-13 3.8E-18 96.0 12.4 80 37-116 115-194 (306)
34 TIGR01648 hnRNP-R-Q heterogene 99.5 1.4E-13 3.1E-18 106.3 12.7 77 35-119 231-309 (578)
35 KOG0114 Predicted RNA-binding 99.5 1.7E-13 3.7E-18 82.6 10.0 84 32-118 13-96 (124)
36 KOG0131 Splicing factor 3b, su 99.5 3.3E-14 7.2E-19 93.6 7.4 83 33-115 5-87 (203)
37 KOG0130 RNA-binding protein RB 99.5 4.2E-14 9.1E-19 89.1 7.5 88 33-120 68-155 (170)
38 PLN03121 nucleic acid binding 99.5 1.4E-13 3E-18 95.0 10.5 77 35-115 3-79 (243)
39 KOG0145 RNA-binding protein EL 99.5 2.6E-13 5.6E-18 94.1 11.3 87 34-120 38-124 (360)
40 cd00590 RRM RRM (RNA recogniti 99.5 3.5E-13 7.5E-18 76.8 10.2 74 39-113 1-74 (74)
41 KOG0105 Alternative splicing f 99.5 1E-13 2.3E-18 91.7 8.6 81 35-118 4-84 (241)
42 KOG0148 Apoptosis-promoting RN 99.5 3E-13 6.6E-18 94.0 10.5 84 33-122 160-243 (321)
43 KOG0144 RNA-binding protein CU 99.5 1.5E-13 3.2E-18 100.8 9.4 88 33-120 30-120 (510)
44 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.5 2.5E-13 5.4E-18 103.9 11.1 77 36-118 1-79 (481)
45 KOG4212 RNA-binding protein hn 99.5 8.1E-13 1.8E-17 97.3 10.3 84 32-116 39-123 (608)
46 KOG0144 RNA-binding protein CU 99.4 1.3E-13 2.8E-18 101.1 5.5 85 35-120 122-209 (510)
47 KOG0117 Heterogeneous nuclear 99.4 5.7E-13 1.2E-17 98.0 8.2 83 32-122 254-336 (506)
48 PF13893 RRM_5: RNA recognitio 99.4 2.2E-12 4.7E-17 70.8 8.6 56 54-114 1-56 (56)
49 KOG0145 RNA-binding protein EL 99.4 6.7E-12 1.5E-16 87.2 10.6 85 33-117 274-358 (360)
50 smart00361 RRM_1 RNA recogniti 99.4 5.2E-12 1.1E-16 72.5 8.2 62 51-112 2-70 (70)
51 KOG0127 Nucleolar protein fibr 99.4 3.3E-12 7.2E-17 96.2 9.2 88 32-119 287-380 (678)
52 KOG0127 Nucleolar protein fibr 99.4 5.5E-12 1.2E-16 95.0 10.3 85 37-122 117-201 (678)
53 KOG0146 RNA-binding protein ET 99.4 1.1E-12 2.5E-17 91.3 5.7 89 31-119 279-367 (371)
54 KOG0124 Polypyrimidine tract-b 99.3 1.2E-12 2.6E-17 94.6 4.8 78 38-115 114-191 (544)
55 KOG0109 RNA-binding protein LA 99.3 3.2E-12 7E-17 89.8 6.5 73 38-118 3-75 (346)
56 KOG0415 Predicted peptidyl pro 99.3 3.7E-12 8.1E-17 91.7 6.9 84 33-116 235-318 (479)
57 KOG4206 Spliceosomal protein s 99.3 1.3E-11 2.7E-16 84.0 8.3 82 35-119 7-92 (221)
58 KOG0147 Transcriptional coacti 99.3 6.3E-12 1.4E-16 94.6 6.3 82 39-120 280-361 (549)
59 KOG4208 Nucleolar RNA-binding 99.3 2.6E-11 5.6E-16 81.5 8.3 83 35-117 47-130 (214)
60 KOG0131 Splicing factor 3b, su 99.3 1.1E-11 2.3E-16 81.8 5.9 87 32-118 91-178 (203)
61 KOG0153 Predicted RNA-binding 99.3 6.8E-11 1.5E-15 84.9 10.0 84 28-117 219-303 (377)
62 KOG0123 Polyadenylate-binding 99.3 3.2E-11 7E-16 89.3 8.5 80 40-122 79-158 (369)
63 TIGR01642 U2AF_lg U2 snRNP aux 99.2 1.7E-10 3.6E-15 88.8 10.3 76 33-115 171-258 (509)
64 KOG0124 Polypyrimidine tract-b 99.1 1.5E-10 3.3E-15 83.9 7.3 86 35-120 208-293 (544)
65 KOG0116 RasGAP SH3 binding pro 99.1 1.1E-09 2.3E-14 81.9 10.9 87 35-122 286-372 (419)
66 KOG0109 RNA-binding protein LA 99.1 1.8E-10 4E-15 81.1 6.2 79 34-120 75-153 (346)
67 KOG0146 RNA-binding protein ET 99.1 2E-10 4.4E-15 80.2 6.2 85 35-120 17-104 (371)
68 KOG0132 RNA polymerase II C-te 99.1 1.1E-09 2.3E-14 85.7 10.5 77 37-119 421-497 (894)
69 KOG4205 RNA-binding protein mu 99.1 3.4E-10 7.3E-15 81.7 7.0 86 36-122 96-181 (311)
70 KOG4205 RNA-binding protein mu 99.1 1.9E-10 4.2E-15 83.0 5.6 88 36-124 5-92 (311)
71 PF04059 RRM_2: RNA recognitio 99.1 2.2E-09 4.8E-14 65.0 9.1 78 38-115 2-85 (97)
72 KOG0533 RRM motif-containing p 99.1 1.5E-09 3.3E-14 75.7 8.7 85 34-119 80-164 (243)
73 KOG4212 RNA-binding protein hn 99.0 6.9E-10 1.5E-14 82.1 6.9 76 34-114 533-608 (608)
74 KOG0226 RNA-binding proteins [ 99.0 4E-10 8.7E-15 78.0 5.2 90 28-117 181-270 (290)
75 KOG1457 RNA binding protein (c 99.0 1.1E-08 2.5E-13 69.8 12.0 88 32-119 29-120 (284)
76 KOG0110 RNA-binding protein (R 99.0 3.3E-10 7.2E-15 87.6 4.9 84 36-119 612-695 (725)
77 KOG0123 Polyadenylate-binding 99.0 1.9E-09 4.2E-14 79.9 8.3 76 38-119 2-77 (369)
78 KOG4660 Protein Mei2, essentia 99.0 6.5E-10 1.4E-14 84.0 5.6 72 34-110 72-143 (549)
79 KOG4661 Hsp27-ERE-TATA-binding 99.0 2.5E-09 5.4E-14 81.6 8.2 87 36-122 404-490 (940)
80 KOG1548 Transcription elongati 98.9 1.5E-08 3.2E-13 73.0 10.1 81 34-115 131-219 (382)
81 KOG0110 RNA-binding protein (R 98.9 6.8E-09 1.5E-13 80.5 8.4 79 40-118 518-599 (725)
82 KOG0106 Alternative splicing f 98.9 2.7E-09 5.9E-14 73.1 5.4 74 38-119 2-75 (216)
83 KOG0151 Predicted splicing reg 98.9 2.4E-08 5.1E-13 77.8 9.6 89 34-122 171-262 (877)
84 KOG4209 Splicing factor RNPS1, 98.8 1.5E-08 3.2E-13 70.7 6.2 86 32-118 96-181 (231)
85 KOG4454 RNA binding protein (R 98.8 3.9E-09 8.5E-14 71.8 2.2 81 33-115 5-85 (267)
86 KOG4211 Splicing factor hnRNP- 98.7 1.5E-07 3.3E-12 70.6 8.8 82 34-119 7-88 (510)
87 KOG0120 Splicing factor U2AF, 98.7 5.5E-08 1.2E-12 74.0 5.9 89 33-121 285-373 (500)
88 KOG0147 Transcriptional coacti 98.6 9.4E-09 2E-13 77.8 0.8 90 30-120 172-261 (549)
89 KOG1456 Heterogeneous nuclear 98.4 6.5E-06 1.4E-10 60.4 11.5 81 32-117 282-363 (494)
90 KOG1457 RNA binding protein (c 98.4 4.3E-07 9.3E-12 62.3 4.2 65 36-104 209-273 (284)
91 KOG1190 Polypyrimidine tract-b 98.3 4.6E-06 9.9E-11 61.7 8.5 76 37-117 297-373 (492)
92 KOG4206 Spliceosomal protein s 98.3 7.3E-06 1.6E-10 56.2 8.9 78 33-115 142-220 (221)
93 PF11608 Limkain-b1: Limkain b 98.3 8.2E-06 1.8E-10 47.8 7.2 70 39-118 4-78 (90)
94 KOG4211 Splicing factor hnRNP- 98.2 7.1E-06 1.5E-10 61.9 8.0 79 35-115 101-180 (510)
95 KOG4307 RNA binding protein RB 98.2 2.4E-05 5.1E-10 61.5 11.0 78 35-113 864-943 (944)
96 KOG1995 Conserved Zn-finger pr 98.2 1.9E-06 4.2E-11 62.5 4.4 86 34-119 63-156 (351)
97 KOG3152 TBP-binding protein, a 98.2 9.4E-07 2E-11 61.6 2.2 73 36-108 73-157 (278)
98 PF08777 RRM_3: RNA binding mo 98.2 7.9E-06 1.7E-10 50.4 6.0 60 37-102 1-60 (105)
99 KOG4849 mRNA cleavage factor I 98.1 3.1E-06 6.7E-11 61.6 3.1 79 36-114 79-159 (498)
100 KOG0106 Alternative splicing f 98.1 9E-06 1.9E-10 56.0 4.9 77 31-115 93-169 (216)
101 KOG4210 Nuclear localization s 98.1 6.1E-06 1.3E-10 59.5 4.3 86 34-120 181-267 (285)
102 KOG1190 Polypyrimidine tract-b 98.0 9.2E-06 2E-10 60.2 4.5 80 31-116 22-103 (492)
103 KOG1456 Heterogeneous nuclear 97.9 0.00013 2.8E-09 53.8 9.4 80 35-119 118-201 (494)
104 KOG0129 Predicted RNA-binding 97.9 9.5E-05 2.1E-09 56.3 8.8 70 31-101 253-328 (520)
105 COG5175 MOT2 Transcriptional r 97.9 4.2E-05 9.1E-10 55.6 6.4 78 38-115 115-201 (480)
106 KOG0105 Alternative splicing f 97.8 0.00019 4E-09 48.3 7.6 67 32-105 110-176 (241)
107 KOG2314 Translation initiation 97.7 0.00019 4.1E-09 55.4 7.6 80 35-115 56-142 (698)
108 KOG0129 Predicted RNA-binding 97.7 0.00016 3.5E-09 55.0 6.8 66 33-98 366-432 (520)
109 KOG1365 RNA-binding protein Fu 97.7 0.00017 3.7E-09 53.3 6.5 78 37-115 280-360 (508)
110 PF14605 Nup35_RRM_2: Nup53/35 97.7 0.00019 4.1E-09 38.7 5.1 52 38-96 2-53 (53)
111 KOG1548 Transcription elongati 97.6 0.00046 1E-08 50.3 7.4 82 33-118 261-353 (382)
112 KOG0120 Splicing factor U2AF, 97.5 0.00061 1.3E-08 52.4 7.5 64 54-117 426-492 (500)
113 KOG2202 U2 snRNP splicing fact 97.2 0.00016 3.4E-09 50.7 1.8 55 60-115 92-146 (260)
114 PF08952 DUF1866: Domain of un 97.2 0.0022 4.8E-08 41.6 6.8 57 53-118 52-108 (146)
115 KOG2416 Acinus (induces apopto 97.2 0.00039 8.6E-09 54.0 3.8 77 33-115 440-520 (718)
116 PF05172 Nup35_RRM: Nup53/35/4 97.2 0.0037 7.9E-08 38.2 7.0 77 36-114 5-89 (100)
117 KOG0128 RNA-binding protein SA 97.1 0.00022 4.8E-09 57.2 1.6 80 37-117 736-815 (881)
118 KOG1855 Predicted RNA-binding 97.1 0.0013 2.9E-08 49.3 5.3 71 32-102 226-309 (484)
119 KOG1365 RNA-binding protein Fu 97.1 0.0059 1.3E-07 45.4 8.4 62 36-98 160-225 (508)
120 KOG4676 Splicing factor, argin 97.1 0.0015 3.4E-08 48.5 5.3 80 39-119 9-91 (479)
121 KOG0112 Large RNA-binding prot 97.0 0.0023 4.9E-08 52.0 6.5 80 33-118 451-532 (975)
122 KOG1996 mRNA splicing factor [ 97.0 0.0045 9.8E-08 44.5 6.9 65 52-116 301-366 (378)
123 PF08675 RNA_bind: RNA binding 97.0 0.0079 1.7E-07 35.3 6.8 60 33-101 5-64 (87)
124 KOG4660 Protein Mei2, essentia 96.7 0.0042 9.1E-08 48.0 5.5 55 61-115 413-471 (549)
125 PF03467 Smg4_UPF3: Smg-4/UPF3 96.6 0.0041 8.9E-08 41.9 4.5 84 35-118 5-99 (176)
126 KOG0128 RNA-binding protein SA 96.4 0.0003 6.6E-09 56.5 -2.3 82 36-119 666-747 (881)
127 PF10309 DUF2414: Protein of u 96.4 0.035 7.5E-07 30.8 6.5 54 38-99 6-62 (62)
128 KOG4307 RNA binding protein RB 96.3 0.0078 1.7E-07 48.0 4.9 81 34-115 431-512 (944)
129 KOG2193 IGF-II mRNA-binding pr 96.3 0.0046 1E-07 46.6 3.3 76 39-121 3-80 (584)
130 PF07576 BRAP2: BRCA1-associat 96.2 0.15 3.2E-06 31.7 9.4 66 38-105 13-80 (110)
131 KOG0112 Large RNA-binding prot 96.1 0.0023 5E-08 51.9 1.1 83 33-116 368-450 (975)
132 KOG0115 RNA-binding protein p5 96.1 0.0098 2.1E-07 41.9 3.9 64 38-102 32-95 (275)
133 PF15023 DUF4523: Protein of u 95.9 0.089 1.9E-06 34.2 7.3 74 33-114 82-159 (166)
134 PF04847 Calcipressin: Calcipr 95.5 0.082 1.8E-06 35.9 6.5 61 51-117 9-71 (184)
135 PF03880 DbpA: DbpA RNA bindin 95.4 0.16 3.5E-06 29.0 6.7 67 39-114 2-74 (74)
136 KOG2068 MOT2 transcription fac 95.2 0.0092 2E-07 43.5 1.2 81 38-118 78-164 (327)
137 KOG2135 Proteins containing th 95.1 0.021 4.6E-07 43.6 2.9 76 37-119 372-448 (526)
138 KOG4574 RNA-binding protein (c 94.3 0.065 1.4E-06 43.8 4.1 77 41-123 302-380 (1007)
139 KOG0804 Cytoplasmic Zn-finger 94.0 0.3 6.5E-06 37.4 6.8 68 35-105 72-141 (493)
140 KOG2253 U1 snRNP complex, subu 93.8 0.12 2.5E-06 41.2 4.5 72 33-113 36-107 (668)
141 KOG4483 Uncharacterized conser 93.7 0.36 7.7E-06 36.5 6.6 59 33-98 387-446 (528)
142 PF11767 SET_assoc: Histone ly 93.7 0.67 1.5E-05 26.0 6.6 56 47-111 10-65 (66)
143 KOG2591 c-Mpl binding protein, 93.7 0.15 3.2E-06 40.0 4.8 73 35-114 173-249 (684)
144 KOG4410 5-formyltetrahydrofola 92.0 1.6 3.4E-05 31.8 7.7 55 29-89 322-377 (396)
145 KOG4210 Nuclear localization s 89.1 0.63 1.4E-05 33.8 3.7 81 35-115 86-166 (285)
146 KOG4285 Mitotic phosphoprotein 87.1 7.5 0.00016 28.6 8.0 69 37-113 197-266 (350)
147 PF07530 PRE_C2HC: Associated 84.4 3.7 8E-05 23.1 4.4 64 52-118 2-66 (68)
148 KOG2318 Uncharacterized conser 77.9 16 0.00034 29.4 7.1 81 34-114 171-305 (650)
149 PF10567 Nab6_mRNP_bdg: RNA-re 76.8 9.4 0.0002 27.9 5.3 85 31-115 9-106 (309)
150 KOG2193 IGF-II mRNA-binding pr 76.7 0.055 1.2E-06 41.0 -6.0 81 35-119 78-159 (584)
151 KOG2295 C2H2 Zn-finger protein 76.0 0.34 7.3E-06 38.1 -2.1 75 35-109 229-303 (648)
152 smart00596 PRE_C2HC PRE_C2HC d 74.4 8.7 0.00019 21.8 3.8 65 52-119 2-67 (69)
153 KOG4676 Splicing factor, argin 67.2 0.47 1E-05 35.8 -3.0 63 38-105 152-214 (479)
154 PF15513 DUF4651: Domain of un 67.0 15 0.00033 20.3 3.6 21 52-72 9-29 (62)
155 KOG2891 Surface glycoprotein [ 55.9 19 0.00042 26.3 3.5 66 38-103 150-246 (445)
156 COG0724 RNA-binding proteins ( 54.5 29 0.00062 23.7 4.3 41 32-72 220-260 (306)
157 PF03468 XS: XS domain; Inter 53.0 50 0.0011 20.6 4.7 45 50-97 30-75 (116)
158 KOG4019 Calcineurin-mediated s 52.0 16 0.00034 24.9 2.4 73 39-117 12-90 (193)
159 PF07292 NID: Nmi/IFP 35 domai 51.0 11 0.00023 22.5 1.4 25 35-59 50-74 (88)
160 KOG1295 Nonsense-mediated deca 51.0 27 0.00058 26.5 3.7 65 38-103 8-76 (376)
161 PF02714 DUF221: Domain of unk 46.9 34 0.00075 24.9 3.8 36 82-119 1-36 (325)
162 PF03439 Spt5-NGN: Early trans 43.4 56 0.0012 18.9 3.7 27 78-104 43-69 (84)
163 KOG4454 RNA binding protein (R 41.5 5.4 0.00012 28.0 -1.0 69 34-103 77-149 (267)
164 PRK11634 ATP-dependent RNA hel 41.0 2E+02 0.0044 23.6 8.7 71 38-117 487-563 (629)
165 PF09707 Cas_Cas2CT1978: CRISP 38.5 86 0.0019 18.6 4.1 47 38-87 26-72 (86)
166 COG0030 KsgA Dimethyladenosine 38.1 55 0.0012 23.6 3.6 34 38-71 96-129 (259)
167 PRK11901 hypothetical protein; 36.4 92 0.002 23.3 4.5 61 38-102 246-307 (327)
168 PF13046 DUF3906: Protein of u 36.3 56 0.0012 18.2 2.6 34 49-84 30-63 (64)
169 PHA01632 hypothetical protein 36.2 44 0.00095 18.1 2.1 19 42-60 21-39 (64)
170 PRK01178 rps24e 30S ribosomal 34.8 1.1E+02 0.0023 18.6 4.8 47 48-95 30-81 (99)
171 PF15063 TC1: Thyroid cancer p 34.1 41 0.00088 19.4 1.9 30 35-64 23-52 (79)
172 cd00027 BRCT Breast Cancer Sup 33.7 74 0.0016 16.4 3.2 27 38-64 2-28 (72)
173 PF04800 ETC_C1_NDUFA4: ETC co 33.2 1.2E+02 0.0025 18.6 4.2 50 76-133 44-94 (101)
174 PF14893 PNMA: PNMA 33.1 38 0.00083 25.3 2.2 25 35-59 16-40 (331)
175 PF11411 DNA_ligase_IV: DNA li 33.1 36 0.00079 16.6 1.4 16 47-62 19-34 (36)
176 PRK11558 putative ssRNA endonu 31.7 1.1E+02 0.0025 18.5 3.7 48 38-88 28-75 (97)
177 PF11823 DUF3343: Protein of u 31.2 87 0.0019 17.5 3.1 24 81-104 3-26 (73)
178 PF15407 Spo7_2_N: Sporulation 31.0 17 0.00036 20.5 0.1 24 35-58 25-48 (67)
179 PF04127 DFP: DNA / pantothena 30.9 1.7E+02 0.0037 19.8 5.6 60 38-99 19-79 (185)
180 KOG4213 RNA-binding protein La 30.5 1.7E+02 0.0037 20.1 4.7 49 49-98 118-169 (205)
181 KOG4008 rRNA processing protei 29.0 55 0.0012 23.4 2.3 33 34-66 37-69 (261)
182 KOG0226 RNA-binding proteins [ 28.9 43 0.00094 24.2 1.8 83 38-121 97-182 (290)
183 PRK11230 glycolate oxidase sub 28.6 3E+02 0.0065 21.8 6.9 49 51-100 203-255 (499)
184 PRK10629 EnvZ/OmpR regulon mod 26.6 1.8E+02 0.0038 18.5 7.7 70 38-115 36-109 (127)
185 PF00398 RrnaAD: Ribosomal RNA 26.2 78 0.0017 22.5 2.8 23 37-59 97-119 (262)
186 PHA03008 hypothetical protein; 25.5 87 0.0019 21.8 2.7 37 36-72 20-56 (234)
187 PRK10905 cell division protein 25.2 2.2E+02 0.0047 21.4 4.9 61 38-102 248-309 (328)
188 PF08734 GYD: GYD domain; Int 24.8 1.6E+02 0.0034 17.4 5.9 45 52-100 23-68 (91)
189 PF00403 HMA: Heavy-metal-asso 24.1 1.2E+02 0.0027 15.8 5.9 54 39-98 1-58 (62)
190 PRK00274 ksgA 16S ribosomal RN 23.8 1.1E+02 0.0024 21.8 3.2 22 39-60 107-128 (272)
191 PF02946 GTF2I: GTF2I-like rep 23.4 1.2E+02 0.0027 17.5 2.7 30 38-67 35-72 (76)
192 PF00585 Thr_dehydrat_C: C-ter 22.8 1.7E+02 0.0038 17.1 4.4 60 41-102 13-74 (91)
193 PTZ00338 dimethyladenosine tra 22.5 1.2E+02 0.0025 22.3 3.1 32 39-70 103-134 (294)
194 COG5193 LHP1 La protein, small 22.5 46 0.001 25.6 1.0 61 37-97 174-244 (438)
195 PF05189 RTC_insert: RNA 3'-te 21.7 1.8E+02 0.004 17.3 3.5 48 39-86 12-64 (103)
196 smart00650 rADc Ribosomal RNA 21.5 1.8E+02 0.004 18.9 3.7 23 38-60 78-100 (169)
197 KOG0156 Cytochrome P450 CYP2 s 20.7 3.5E+02 0.0075 21.5 5.6 58 42-109 37-97 (489)
198 KOG0738 AAA+-type ATPase [Post 20.3 94 0.002 24.3 2.3 21 37-57 350-373 (491)
199 PTZ00071 40S ribosomal protein 20.2 2.6E+02 0.0056 18.1 5.2 47 48-95 35-87 (132)
No 1
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.87 E-value=2.9e-20 Score=120.95 Aligned_cols=88 Identities=48% Similarity=0.688 Sum_probs=82.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEe
Q 032702 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEY 113 (135)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 113 (135)
.....+|||+|||+++++++|+++|.+||.|..+.++.+..+++++|||||+|.+.++|+.|++.|++..+.|+.|+|.+
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 35567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCC
Q 032702 114 AKPRQPPT 121 (135)
Q Consensus 114 a~~~~~~~ 121 (135)
+..++...
T Consensus 111 a~~~~~~~ 118 (144)
T PLN03134 111 ANDRPSAP 118 (144)
T ss_pred CCcCCCCC
Confidence 98776543
No 2
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.79 E-value=3.9e-18 Score=125.28 Aligned_cols=85 Identities=28% Similarity=0.464 Sum_probs=80.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEee
Q 032702 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYA 114 (135)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 114 (135)
..+..|||+|||+++++++|+++|.+||.|..+.++.+..++.++|||||+|.+.++|..|+..|||..++|+.|+|.|+
T Consensus 267 ~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~ 346 (352)
T TIGR01661 267 GAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFK 346 (352)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 44557999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 032702 115 KPRQP 119 (135)
Q Consensus 115 ~~~~~ 119 (135)
..+..
T Consensus 347 ~~~~~ 351 (352)
T TIGR01661 347 TNKAY 351 (352)
T ss_pred cCCCC
Confidence 87764
No 3
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.76 E-value=9.2e-18 Score=123.32 Aligned_cols=84 Identities=37% Similarity=0.615 Sum_probs=79.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEeeC
Q 032702 36 PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAK 115 (135)
Q Consensus 36 ~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 115 (135)
+..+|||+|||..+++++|+++|..||.|..+.++.++.+|+++|||||+|.+.++|.+|++.|++..+.|+.|+|.+++
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 35699999999999999999999999999999999998899999999999999999999999999999999999999998
Q ss_pred CCCC
Q 032702 116 PRQP 119 (135)
Q Consensus 116 ~~~~ 119 (135)
+...
T Consensus 82 ~~~~ 85 (352)
T TIGR01661 82 PSSD 85 (352)
T ss_pred cccc
Confidence 7654
No 4
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.76 E-value=7.9e-18 Score=123.35 Aligned_cols=86 Identities=28% Similarity=0.507 Sum_probs=80.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEE
Q 032702 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVE 112 (135)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 112 (135)
.....++|||++||+++++++|+++|..||.|..+.|+.+..+++++|||||+|.+.++|++|++.|++..+.+++|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 44567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred eeCCCC
Q 032702 113 YAKPRQ 118 (135)
Q Consensus 113 ~a~~~~ 118 (135)
++++..
T Consensus 183 ~a~p~~ 188 (346)
T TIGR01659 183 YARPGG 188 (346)
T ss_pred cccccc
Confidence 987654
No 5
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.75 E-value=2.9e-17 Score=112.25 Aligned_cols=84 Identities=29% Similarity=0.594 Sum_probs=80.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEe
Q 032702 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEY 113 (135)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 113 (135)
..+..+|-|.||+.++++.+|+++|..||.|..+.+..++.||.++|||||.|.+.++|.+|+..|+|.-+.+--|+|+|
T Consensus 186 R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEw 265 (270)
T KOG0122|consen 186 RDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEW 265 (270)
T ss_pred CCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEe
Confidence 34677999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCC
Q 032702 114 AKPR 117 (135)
Q Consensus 114 a~~~ 117 (135)
++|+
T Consensus 266 skP~ 269 (270)
T KOG0122|consen 266 SKPS 269 (270)
T ss_pred cCCC
Confidence 9986
No 6
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.75 E-value=3.2e-17 Score=93.74 Aligned_cols=70 Identities=41% Similarity=0.710 Sum_probs=66.9
Q ss_pred EEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEE
Q 032702 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIF 110 (135)
Q Consensus 40 v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~ 110 (135)
|||+|||.++++++|+++|..||.+..+.+..+ .++..+++|||+|.+.++|+.|++.|++..+.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999987 6788999999999999999999999999999999886
No 7
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.71 E-value=8.8e-17 Score=109.39 Aligned_cols=81 Identities=37% Similarity=0.596 Sum_probs=74.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEee
Q 032702 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYA 114 (135)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 114 (135)
..-.+||||+|+|.+..+.|++.|++||+|.+..|+.|+.+|+++||+||+|.+.++|.+|++. ..-.|+||+..|.+|
T Consensus 10 T~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA 88 (247)
T KOG0149|consen 10 TTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLA 88 (247)
T ss_pred ceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchh
Confidence 3446999999999999999999999999999999999999999999999999999999999983 446799999999988
Q ss_pred CC
Q 032702 115 KP 116 (135)
Q Consensus 115 ~~ 116 (135)
.-
T Consensus 89 ~l 90 (247)
T KOG0149|consen 89 SL 90 (247)
T ss_pred hh
Confidence 54
No 8
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.69 E-value=1.9e-16 Score=106.08 Aligned_cols=87 Identities=34% Similarity=0.547 Sum_probs=81.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEE
Q 032702 32 PQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFV 111 (135)
Q Consensus 32 ~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 111 (135)
++......|-|-||..-++.++|..+|++||.|.+|.|..|+.|+..+|||||.|.+..+|+.|+++|+|..++|+.|.|
T Consensus 8 Pdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrV 87 (256)
T KOG4207|consen 8 PDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRV 87 (256)
T ss_pred CCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeee
Confidence 44566679999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCC
Q 032702 112 EYAKPRQ 118 (135)
Q Consensus 112 ~~a~~~~ 118 (135)
++|+-..
T Consensus 88 q~arygr 94 (256)
T KOG4207|consen 88 QMARYGR 94 (256)
T ss_pred hhhhcCC
Confidence 9996443
No 9
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.68 E-value=1.1e-15 Score=118.11 Aligned_cols=86 Identities=22% Similarity=0.429 Sum_probs=80.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEee
Q 032702 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYA 114 (135)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 114 (135)
....+|||+|||.++++++|+++|+.||.|..+.+..+..+++++|||||+|.+.++|..|+..||+..++|+.|+|.++
T Consensus 202 ~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kA 281 (612)
T TIGR01645 202 KKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 281 (612)
T ss_pred cccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEec
Confidence 34579999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 032702 115 KPRQPP 120 (135)
Q Consensus 115 ~~~~~~ 120 (135)
.+++..
T Consensus 282 i~pP~~ 287 (612)
T TIGR01645 282 VTPPDA 287 (612)
T ss_pred CCCccc
Confidence 876543
No 10
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.68 E-value=9.2e-16 Score=112.52 Aligned_cols=84 Identities=27% Similarity=0.542 Sum_probs=77.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC--eEEEEEe
Q 032702 36 PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDG--WVIFVEY 113 (135)
Q Consensus 36 ~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g--~~l~v~~ 113 (135)
...+|||+|||.++++++|+++|.+||.|..+.++.++.+++.+++|||+|.+.++|++|++.|++..+.+ +.|+|.+
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~ 271 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRL 271 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 45689999999999999999999999999999999998899999999999999999999999999998765 6899999
Q ss_pred eCCCCC
Q 032702 114 AKPRQP 119 (135)
Q Consensus 114 a~~~~~ 119 (135)
+.....
T Consensus 272 a~~~~~ 277 (346)
T TIGR01659 272 AEEHGK 277 (346)
T ss_pred CCcccc
Confidence 876544
No 11
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.68 E-value=1.1e-15 Score=87.63 Aligned_cols=70 Identities=39% Similarity=0.723 Sum_probs=64.2
Q ss_pred EEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEE
Q 032702 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIF 110 (135)
Q Consensus 40 v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~ 110 (135)
|||+|||+++++++|.++|..||.|..+.+..++. +..+++|||+|.+.++|..|+..+++..+.|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999865 88999999999999999999999998999999874
No 12
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.66 E-value=4.8e-16 Score=101.60 Aligned_cols=80 Identities=29% Similarity=0.471 Sum_probs=72.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEee
Q 032702 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYA 114 (135)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 114 (135)
...+.||||||+..+++.+|+.+|..||.+..+.|-.. +.|||||+|++..+|+.|+..|+|..|.|..|+|+++
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S 82 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELS 82 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEee
Confidence 44679999999999999999999999999999988654 4689999999999999999999999999999999999
Q ss_pred CCCCC
Q 032702 115 KPRQP 119 (135)
Q Consensus 115 ~~~~~ 119 (135)
.-...
T Consensus 83 ~G~~r 87 (195)
T KOG0107|consen 83 TGRPR 87 (195)
T ss_pred cCCcc
Confidence 76554
No 13
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.66 E-value=1e-15 Score=118.37 Aligned_cols=82 Identities=30% Similarity=0.490 Sum_probs=77.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEee
Q 032702 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYA 114 (135)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 114 (135)
...++|||+|||+++++++|+++|..||.|..+.++.++.+++++|||||+|.+.++|+.|++.|++..+.|+.|+|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred CC
Q 032702 115 KP 116 (135)
Q Consensus 115 ~~ 116 (135)
..
T Consensus 185 ~~ 186 (612)
T TIGR01645 185 SN 186 (612)
T ss_pred cc
Confidence 43
No 14
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.65 E-value=1.8e-15 Score=106.11 Aligned_cols=85 Identities=29% Similarity=0.569 Sum_probs=79.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEE
Q 032702 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVE 112 (135)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 112 (135)
...+-+||||+.|+.+++|..|++.|..||.|+.+.|+.+.-||+++|||||+|....++..|.+..+|..|.|+.|.|.
T Consensus 97 ~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VD 176 (335)
T KOG0113|consen 97 IGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVD 176 (335)
T ss_pred cCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEE
Confidence 44667899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred eeCCC
Q 032702 113 YAKPR 117 (135)
Q Consensus 113 ~a~~~ 117 (135)
+-.-.
T Consensus 177 vERgR 181 (335)
T KOG0113|consen 177 VERGR 181 (335)
T ss_pred ecccc
Confidence 87533
No 15
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.65 E-value=4.1e-15 Score=114.12 Aligned_cols=84 Identities=19% Similarity=0.406 Sum_probs=78.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEee
Q 032702 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYA 114 (135)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 114 (135)
....+|||+|||..+++++|+++|..||.|..+.++.+..+|.++|||||+|.+.++|..|+..|++..+.|+.|.|.++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 45579999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred CCCC
Q 032702 115 KPRQ 118 (135)
Q Consensus 115 ~~~~ 118 (135)
....
T Consensus 373 ~~~~ 376 (509)
T TIGR01642 373 CVGA 376 (509)
T ss_pred ccCC
Confidence 6543
No 16
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.65 E-value=2.1e-15 Score=117.07 Aligned_cols=81 Identities=27% Similarity=0.480 Sum_probs=76.6
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEeeCCCC
Q 032702 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKPRQ 118 (135)
Q Consensus 39 ~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~~ 118 (135)
+|||+|||.++++++|+++|..||.|..+.+.++..+++++|||||+|.+.++|++|++.+++..+.|+.|+|.|+....
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 79999999999999999999999999999999998889999999999999999999999999999999999999986544
Q ss_pred C
Q 032702 119 P 119 (135)
Q Consensus 119 ~ 119 (135)
.
T Consensus 82 ~ 82 (562)
T TIGR01628 82 S 82 (562)
T ss_pred c
Confidence 3
No 17
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.64 E-value=2.5e-15 Score=110.30 Aligned_cols=87 Identities=21% Similarity=0.381 Sum_probs=80.0
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCcee-CCeEE
Q 032702 31 RPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFL-DGWVI 109 (135)
Q Consensus 31 ~~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~-~g~~l 109 (135)
.+....++.||||.||.++.|++|.-+|+..|.|.++++|+|+.+|.++|||||+|.+.+.|+.|++.||+..| .|+.|
T Consensus 77 g~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~i 156 (506)
T KOG0117|consen 77 GPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLL 156 (506)
T ss_pred CCCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEe
Confidence 44457889999999999999999999999999999999999999999999999999999999999999999987 68889
Q ss_pred EEEeeCCC
Q 032702 110 FVEYAKPR 117 (135)
Q Consensus 110 ~v~~a~~~ 117 (135)
.|..+...
T Consensus 157 gvc~Svan 164 (506)
T KOG0117|consen 157 GVCVSVAN 164 (506)
T ss_pred EEEEeeec
Confidence 98887543
No 18
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.63 E-value=8.2e-15 Score=111.21 Aligned_cols=85 Identities=27% Similarity=0.455 Sum_probs=78.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEe
Q 032702 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEY 113 (135)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 113 (135)
..+..+|||+|||..+++++|+++|..||.|..+.++.++.+++.+|||||+|.+.++|.+|+. |++..+.|+.|.|.+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEee
Confidence 4557799999999999999999999999999999999998899999999999999999999997 999999999999998
Q ss_pred eCCCCC
Q 032702 114 AKPRQP 119 (135)
Q Consensus 114 a~~~~~ 119 (135)
+.....
T Consensus 165 ~~~~~~ 170 (457)
T TIGR01622 165 SQAEKN 170 (457)
T ss_pred cchhhh
Confidence 765443
No 19
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.62 E-value=3.6e-15 Score=105.83 Aligned_cols=85 Identities=32% Similarity=0.478 Sum_probs=76.2
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEE
Q 032702 32 PQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFV 111 (135)
Q Consensus 32 ~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 111 (135)
+......+|+|.|||+...+.||+..|++||.|.+|.|+.+ ..-+|||+||+|++.+||++|-++|||..+.||+|.|
T Consensus 91 ~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfN--ERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEV 168 (376)
T KOG0125|consen 91 SSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFN--ERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEV 168 (376)
T ss_pred CCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEec--cCCCCccceEEecChhhHHHHHHHhhcceeeceEEEE
Confidence 34455679999999999999999999999999999998876 2347899999999999999999999999999999999
Q ss_pred EeeCCCC
Q 032702 112 EYAKPRQ 118 (135)
Q Consensus 112 ~~a~~~~ 118 (135)
..+.++-
T Consensus 169 n~ATarV 175 (376)
T KOG0125|consen 169 NNATARV 175 (376)
T ss_pred eccchhh
Confidence 9997653
No 20
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=3.6e-15 Score=103.48 Aligned_cols=88 Identities=35% Similarity=0.658 Sum_probs=82.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEE
Q 032702 32 PQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFV 111 (135)
Q Consensus 32 ~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 111 (135)
+.......|||+.|-..++-++|++.|.+||+|.++++++|.+|++++||+||-|.+.++|+.||..++|.+|++|.|+-
T Consensus 57 ~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRT 136 (321)
T KOG0148|consen 57 PTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRT 136 (321)
T ss_pred CccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeec
Confidence 33344669999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCC
Q 032702 112 EYAKPRQP 119 (135)
Q Consensus 112 ~~a~~~~~ 119 (135)
.||..++.
T Consensus 137 NWATRKp~ 144 (321)
T KOG0148|consen 137 NWATRKPS 144 (321)
T ss_pred cccccCcc
Confidence 99977764
No 21
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.62 E-value=9.6e-15 Score=110.83 Aligned_cols=80 Identities=36% Similarity=0.604 Sum_probs=76.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEeeCC
Q 032702 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKP 116 (135)
Q Consensus 37 ~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~ 116 (135)
..+|||+|||..+++++|+++|..||.|..+.++.+..+|..+|||||+|.+.++|..|+..|++..+.|+.|+|.++..
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 67999999999999999999999999999999999988889999999999999999999999999999999999999863
No 22
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.62 E-value=9e-15 Score=102.15 Aligned_cols=77 Identities=17% Similarity=0.274 Sum_probs=70.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEeeCC
Q 032702 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKP 116 (135)
Q Consensus 37 ~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~ 116 (135)
.++|||+|||+.+++++|+++|..||.|..+.|..++. .+|+|||+|.+.++++.|+. |++..+.|+.|.|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 56999999999999999999999999999999988753 46899999999999999996 999999999999999964
Q ss_pred C
Q 032702 117 R 117 (135)
Q Consensus 117 ~ 117 (135)
-
T Consensus 80 ~ 80 (260)
T PLN03120 80 Y 80 (260)
T ss_pred C
Confidence 3
No 23
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.62 E-value=5.9e-15 Score=113.83 Aligned_cols=81 Identities=19% Similarity=0.340 Sum_probs=73.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeC-CeEEEEE
Q 032702 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLD-GWVIFVE 112 (135)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~-g~~l~v~ 112 (135)
....++|||+|||+++++++|.++|..||.|.+++|+.+ .+++++|||||+|.+.++|++|++.|++..+. ++.|.|.
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~ 133 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVC 133 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccc
Confidence 445689999999999999999999999999999999999 79999999999999999999999999999874 6777776
Q ss_pred eeC
Q 032702 113 YAK 115 (135)
Q Consensus 113 ~a~ 115 (135)
.+.
T Consensus 134 ~S~ 136 (578)
T TIGR01648 134 ISV 136 (578)
T ss_pred ccc
Confidence 653
No 24
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.60 E-value=9e-15 Score=113.60 Aligned_cols=84 Identities=38% Similarity=0.684 Sum_probs=78.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEe
Q 032702 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEY 113 (135)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 113 (135)
.....+|||+||++++++++|+++|..||.|.++.++.+ .++.++|+|||+|.+.++|.+|+..|++..+.|+.|.|.+
T Consensus 282 ~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~ 360 (562)
T TIGR01628 282 KAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVAL 360 (562)
T ss_pred ccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEe
Confidence 345678999999999999999999999999999999999 7899999999999999999999999999999999999999
Q ss_pred eCCCC
Q 032702 114 AKPRQ 118 (135)
Q Consensus 114 a~~~~ 118 (135)
+..+.
T Consensus 361 a~~k~ 365 (562)
T TIGR01628 361 AQRKE 365 (562)
T ss_pred ccCcH
Confidence 98654
No 25
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.60 E-value=3.5e-15 Score=93.07 Aligned_cols=84 Identities=26% Similarity=0.346 Sum_probs=78.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEee
Q 032702 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYA 114 (135)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 114 (135)
..+++|||+||...++|++|.++|...|.|..+.|-.++.+..+.|+|||+|.+.++|+.|++.+++..+..+.|++.|.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 45789999999999999999999999999999999999888888999999999999999999999999999999999987
Q ss_pred CCCC
Q 032702 115 KPRQ 118 (135)
Q Consensus 115 ~~~~ 118 (135)
--=.
T Consensus 114 ~GF~ 117 (153)
T KOG0121|consen 114 AGFV 117 (153)
T ss_pred ccch
Confidence 5333
No 26
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=9.7e-16 Score=103.69 Aligned_cols=88 Identities=34% Similarity=0.541 Sum_probs=82.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEe
Q 032702 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEY 113 (135)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 113 (135)
....++||||+|...+++..|...|-.||+|..+.++.|..+++++||+||+|...++|.+|+..+++..+.|+.|+|.+
T Consensus 7 a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~ 86 (298)
T KOG0111|consen 7 ANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNL 86 (298)
T ss_pred cccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEee
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCC
Q 032702 114 AKPRQPPT 121 (135)
Q Consensus 114 a~~~~~~~ 121 (135)
|+|.+.-.
T Consensus 87 AkP~kike 94 (298)
T KOG0111|consen 87 AKPEKIKE 94 (298)
T ss_pred cCCccccC
Confidence 99887643
No 27
>PLN03213 repressor of silencing 3; Provisional
Probab=99.60 E-value=7.7e-15 Score=109.30 Aligned_cols=80 Identities=24% Similarity=0.401 Sum_probs=72.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCH--HHHHHHHHhhCCceeCCeEEEE
Q 032702 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATL--EAAGKAIEGMDGKFLDGWVIFV 111 (135)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~--~~a~~a~~~l~~~~~~g~~l~v 111 (135)
.....+||||||.+.+++++|..+|..||.|..+.|+ +.+| +|||||+|.+. .++.+|+..|++..|.|+.|+|
T Consensus 7 ~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKV 82 (759)
T PLN03213 7 GGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRL 82 (759)
T ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEE
Confidence 3456799999999999999999999999999999998 4566 89999999976 6899999999999999999999
Q ss_pred EeeCCC
Q 032702 112 EYAKPR 117 (135)
Q Consensus 112 ~~a~~~ 117 (135)
..|++.
T Consensus 83 NKAKP~ 88 (759)
T PLN03213 83 EKAKEH 88 (759)
T ss_pred eeccHH
Confidence 999853
No 28
>smart00362 RRM_2 RNA recognition motif.
Probab=99.59 E-value=3.1e-14 Score=80.83 Aligned_cols=72 Identities=44% Similarity=0.686 Sum_probs=66.4
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEE
Q 032702 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVE 112 (135)
Q Consensus 39 ~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 112 (135)
+|||+|||..+++++|+++|..||.+..+.+..+. +.+.+++||+|.+.++|+.|+..+++..+.|+.|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999888774 6778999999999999999999999999999998873
No 29
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.59 E-value=3.7e-16 Score=102.76 Aligned_cols=81 Identities=26% Similarity=0.511 Sum_probs=77.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEee
Q 032702 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYA 114 (135)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 114 (135)
.++.-|||||||...||.+|..+|++||++..+-+++|+.||+++||||++|++-.+..-|+..|||..+.|+.|+|...
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred C
Q 032702 115 K 115 (135)
Q Consensus 115 ~ 115 (135)
-
T Consensus 113 ~ 113 (219)
T KOG0126|consen 113 S 113 (219)
T ss_pred c
Confidence 4
No 30
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.55 E-value=1.8e-14 Score=107.64 Aligned_cols=82 Identities=33% Similarity=0.608 Sum_probs=79.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEeeCCC
Q 032702 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKPR 117 (135)
Q Consensus 38 ~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~ 117 (135)
+.|||||+|+++++++|..+|...|.|..++++.|+.+|+.+||+|++|.+.+++..|++.|++..+.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred CC
Q 032702 118 QP 119 (135)
Q Consensus 118 ~~ 119 (135)
+.
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 66
No 31
>smart00360 RRM RNA recognition motif.
Probab=99.55 E-value=6.1e-14 Score=79.31 Aligned_cols=71 Identities=41% Similarity=0.722 Sum_probs=66.0
Q ss_pred EcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEE
Q 032702 42 VSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVE 112 (135)
Q Consensus 42 v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 112 (135)
|+|||..+++++|+++|..||.+..+.+..++.++.++++|||+|.+.++|..|+..+++..+.|+.|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57999999999999999999999999998887778899999999999999999999999999999998873
No 32
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.55 E-value=2e-13 Score=104.41 Aligned_cols=79 Identities=27% Similarity=0.365 Sum_probs=72.3
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEE
Q 032702 34 AEPSTNLFVSGLSK-RTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVE 112 (135)
Q Consensus 34 ~~~~~~v~v~nlp~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 112 (135)
..++.+|||+|||+ .+++++|+++|..||.|..+.++.++ +|+|||+|.+.++|..|+..|++..+.|+.|+|.
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~ 346 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVC 346 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEE
Confidence 34678999999998 69999999999999999999998763 4799999999999999999999999999999999
Q ss_pred eeCCC
Q 032702 113 YAKPR 117 (135)
Q Consensus 113 ~a~~~ 117 (135)
+++..
T Consensus 347 ~s~~~ 351 (481)
T TIGR01649 347 PSKQQ 351 (481)
T ss_pred Ecccc
Confidence 98654
No 33
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.55 E-value=1.8e-13 Score=96.04 Aligned_cols=80 Identities=43% Similarity=0.727 Sum_probs=76.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEeeCC
Q 032702 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKP 116 (135)
Q Consensus 37 ~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~ 116 (135)
..+|||+|||.++++++|.++|..||.+..+.+..++.++..+|+|||+|.+.+++..|+..+++..+.|+.|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 68999999999999999999999999999999999988999999999999999999999999999999999999999654
No 34
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.54 E-value=1.4e-13 Score=106.27 Aligned_cols=77 Identities=35% Similarity=0.545 Sum_probs=70.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcc--CCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEE
Q 032702 35 EPSTNLFVSGLSKRTTDETLRDTFSAF--GEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVE 112 (135)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~--g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 112 (135)
....+|||+||++++++++|+++|..| |.|..+.++. +||||+|.+.++|++|++.|++..+.|+.|+|.
T Consensus 231 ~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r--------gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~ 302 (578)
T TIGR01648 231 AKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR--------DYAFVHFEDREDAVKAMDELNGKELEGSEIEVT 302 (578)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec--------CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 345789999999999999999999999 9999987754 399999999999999999999999999999999
Q ss_pred eeCCCCC
Q 032702 113 YAKPRQP 119 (135)
Q Consensus 113 ~a~~~~~ 119 (135)
++++...
T Consensus 303 ~Akp~~~ 309 (578)
T TIGR01648 303 LAKPVDK 309 (578)
T ss_pred EccCCCc
Confidence 9987654
No 35
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.54 E-value=1.7e-13 Score=82.63 Aligned_cols=84 Identities=25% Similarity=0.413 Sum_probs=73.8
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEE
Q 032702 32 PQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFV 111 (135)
Q Consensus 32 ~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 111 (135)
-++.....+||.|||.+++.++..++|..||.|..+++-.. ...+|.|||.|++..+|.+|+++|.|..+.++.|.|
T Consensus 13 lppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~---k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~v 89 (124)
T KOG0114|consen 13 LPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNT---KETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVV 89 (124)
T ss_pred CChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCc---cCcCceEEEEehHhhhHHHHHHHhcccccCCceEEE
Confidence 34456679999999999999999999999999999988544 345789999999999999999999999999999999
Q ss_pred EeeCCCC
Q 032702 112 EYAKPRQ 118 (135)
Q Consensus 112 ~~a~~~~ 118 (135)
-+-.+..
T Consensus 90 lyyq~~~ 96 (124)
T KOG0114|consen 90 LYYQPED 96 (124)
T ss_pred EecCHHH
Confidence 8876543
No 36
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.54 E-value=3.3e-14 Score=93.58 Aligned_cols=83 Identities=30% Similarity=0.418 Sum_probs=78.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEE
Q 032702 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVE 112 (135)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 112 (135)
+...+.+|||+||+..++++.|.++|-+.|.|..+.+.+++-+..++||||++|.++++|+-|++-|+...+.|++|+|.
T Consensus 5 ~rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ 84 (203)
T KOG0131|consen 5 ERNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVN 84 (203)
T ss_pred ccCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEE
Confidence 44667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeC
Q 032702 113 YAK 115 (135)
Q Consensus 113 ~a~ 115 (135)
.+.
T Consensus 85 kas 87 (203)
T KOG0131|consen 85 KAS 87 (203)
T ss_pred ecc
Confidence 887
No 37
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.53 E-value=4.2e-14 Score=89.08 Aligned_cols=88 Identities=30% Similarity=0.579 Sum_probs=81.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEE
Q 032702 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVE 112 (135)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 112 (135)
..-.+-.|||.++...++++++.+.|..||.|+.+.+..++.||.-+||++|+|.....|++|+..+|+..+.++.|.|.
T Consensus 68 rSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VD 147 (170)
T KOG0130|consen 68 RSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVD 147 (170)
T ss_pred cceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEE
Confidence 34566799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCC
Q 032702 113 YAKPRQPP 120 (135)
Q Consensus 113 ~a~~~~~~ 120 (135)
|+-.+...
T Consensus 148 w~Fv~gp~ 155 (170)
T KOG0130|consen 148 WCFVKGPE 155 (170)
T ss_pred EEEecCCc
Confidence 99555443
No 38
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.53 E-value=1.4e-13 Score=94.98 Aligned_cols=77 Identities=19% Similarity=0.252 Sum_probs=70.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEee
Q 032702 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYA 114 (135)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 114 (135)
..+.+|||+||++.+++++|+++|..||.|..+.+..+.. ..++|||+|.+.++++.|+. |+|..|.++.|.|...
T Consensus 3 ~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~e---t~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~ 78 (243)
T PLN03121 3 PGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGE---YACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRW 78 (243)
T ss_pred CCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCC---cceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeC
Confidence 4568999999999999999999999999999999998743 44799999999999999995 9999999999999886
Q ss_pred C
Q 032702 115 K 115 (135)
Q Consensus 115 ~ 115 (135)
.
T Consensus 79 ~ 79 (243)
T PLN03121 79 G 79 (243)
T ss_pred c
Confidence 5
No 39
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.52 E-value=2.6e-13 Score=94.11 Aligned_cols=87 Identities=37% Similarity=0.592 Sum_probs=81.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEe
Q 032702 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEY 113 (135)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 113 (135)
+.....+.|.=||..+++++++.+|...|+|+.|++++|+-+|.+.||+||.|.++.||++|+..|||..+.++.|+|.+
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 34445788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCC
Q 032702 114 AKPRQPP 120 (135)
Q Consensus 114 a~~~~~~ 120 (135)
++|..+.
T Consensus 118 ARPSs~~ 124 (360)
T KOG0145|consen 118 ARPSSDS 124 (360)
T ss_pred ccCChhh
Confidence 9987753
No 40
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.52 E-value=3.5e-13 Score=76.84 Aligned_cols=74 Identities=43% Similarity=0.729 Sum_probs=67.7
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEe
Q 032702 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEY 113 (135)
Q Consensus 39 ~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 113 (135)
+|+|++||..+++++|+++|..+|.+..+.+..+..+ ...+++||+|.+.++|..|+..+++..+.|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999887543 6788999999999999999999999999999998864
No 41
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.52 E-value=1e-13 Score=91.67 Aligned_cols=81 Identities=23% Similarity=0.414 Sum_probs=72.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEee
Q 032702 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYA 114 (135)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 114 (135)
...++|||+|||.++.+.+|+.+|.+||.|.++.+.... ....||||+|++..+|+.|+..-++..+.|..|+|+++
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 456799999999999999999999999999999885432 24579999999999999999999999999999999999
Q ss_pred CCCC
Q 032702 115 KPRQ 118 (135)
Q Consensus 115 ~~~~ 118 (135)
..-.
T Consensus 81 rggr 84 (241)
T KOG0105|consen 81 RGGR 84 (241)
T ss_pred cCCC
Confidence 7554
No 42
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=3e-13 Score=94.04 Aligned_cols=84 Identities=26% Similarity=0.506 Sum_probs=76.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEE
Q 032702 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVE 112 (135)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 112 (135)
...+.++||||||+..+++++|++.|..||.|.++++-+++ ||+||.|.+.+.|.+||..+|+..+.|..++|.
T Consensus 160 ssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~q------GYaFVrF~tkEaAahAIv~mNntei~G~~VkCs 233 (321)
T KOG0148|consen 160 SSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQ------GYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCS 233 (321)
T ss_pred CCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEeccc------ceEEEEecchhhHHHHHHHhcCceeCceEEEEe
Confidence 45667899999999999999999999999999999997763 699999999999999999999999999999999
Q ss_pred eeCCCCCCCC
Q 032702 113 YAKPRQPPTL 122 (135)
Q Consensus 113 ~a~~~~~~~~ 122 (135)
|-+.......
T Consensus 234 WGKe~~~~~~ 243 (321)
T KOG0148|consen 234 WGKEGDDGIN 243 (321)
T ss_pred ccccCCCCCC
Confidence 9987776544
No 43
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.50 E-value=1.5e-13 Score=100.80 Aligned_cols=88 Identities=28% Similarity=0.502 Sum_probs=79.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCce-e--CCeEE
Q 032702 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKF-L--DGWVI 109 (135)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-~--~g~~l 109 (135)
++.+...+|||.||..++|.+|+.+|++||.|.+|-+.+|+.|+..+|||||.|...++|.+|+.+||+.. + ....|
T Consensus 30 ~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pv 109 (510)
T KOG0144|consen 30 PDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPV 109 (510)
T ss_pred CCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcce
Confidence 34666799999999999999999999999999999999999999999999999999999999999999986 3 45689
Q ss_pred EEEeeCCCCCC
Q 032702 110 FVEYAKPRQPP 120 (135)
Q Consensus 110 ~v~~a~~~~~~ 120 (135)
.|+++..+..+
T Consensus 110 qvk~Ad~E~er 120 (510)
T KOG0144|consen 110 QVKYADGERER 120 (510)
T ss_pred eecccchhhhc
Confidence 99999876654
No 44
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.50 E-value=2.5e-13 Score=103.90 Aligned_cols=77 Identities=19% Similarity=0.337 Sum_probs=69.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhh--CCceeCCeEEEEEe
Q 032702 36 PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM--DGKFLDGWVIFVEY 113 (135)
Q Consensus 36 ~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l--~~~~~~g~~l~v~~ 113 (135)
++.+|||+|||+++++++|+++|..||.|..+.++.+ +++|||+|.+.++|+.|+..+ ++..+.|+.|.|.+
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 4679999999999999999999999999999998764 369999999999999999975 67789999999999
Q ss_pred eCCCC
Q 032702 114 AKPRQ 118 (135)
Q Consensus 114 a~~~~ 118 (135)
+..+.
T Consensus 75 s~~~~ 79 (481)
T TIGR01649 75 STSQE 79 (481)
T ss_pred cCCcc
Confidence 97655
No 45
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.46 E-value=8.1e-13 Score=97.29 Aligned_cols=84 Identities=21% Similarity=0.327 Sum_probs=75.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHh-hccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEE
Q 032702 32 PQAEPSTNLFVSGLSKRTTDETLRDTF-SAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIF 110 (135)
Q Consensus 32 ~~~~~~~~v~v~nlp~~~~~~~l~~~f-~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~ 110 (135)
......+.+||+|||+++.+.+|+.++ ++.|+|..|.+..| .+|+.+|++.|+|++++.+++|++.|+.+.+.|++|.
T Consensus 39 n~~~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D-~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~ 117 (608)
T KOG4212|consen 39 NVAARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD-ESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELV 117 (608)
T ss_pred CcccccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc-cCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEE
Confidence 344455679999999999999999999 57899999999999 6899999999999999999999999999999999999
Q ss_pred EEeeCC
Q 032702 111 VEYAKP 116 (135)
Q Consensus 111 v~~a~~ 116 (135)
|.....
T Consensus 118 vKEd~d 123 (608)
T KOG4212|consen 118 VKEDHD 123 (608)
T ss_pred EeccCc
Confidence 987654
No 46
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.45 E-value=1.3e-13 Score=101.09 Aligned_cols=85 Identities=32% Similarity=0.533 Sum_probs=77.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCce-e--CCeEEEE
Q 032702 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKF-L--DGWVIFV 111 (135)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-~--~g~~l~v 111 (135)
.+.+.||||.|+..++|.+++++|.+||.|++|+|.++ ..+.++||+||.|...+-|..|++.||+.. + .+.+|.|
T Consensus 122 ~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd-~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVV 200 (510)
T KOG0144|consen 122 VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRD-PDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVV 200 (510)
T ss_pred ccchhhhhhhccccccHHHHHHHHHhhCccchhhheec-ccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEE
Confidence 34789999999999999999999999999999999999 678999999999999999999999999996 4 4568999
Q ss_pred EeeCCCCCC
Q 032702 112 EYAKPRQPP 120 (135)
Q Consensus 112 ~~a~~~~~~ 120 (135)
+||.++++.
T Consensus 201 kFADtqkdk 209 (510)
T KOG0144|consen 201 KFADTQKDK 209 (510)
T ss_pred EecccCCCc
Confidence 999988764
No 47
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.44 E-value=5.7e-13 Score=98.04 Aligned_cols=83 Identities=36% Similarity=0.487 Sum_probs=75.3
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEE
Q 032702 32 PQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFV 111 (135)
Q Consensus 32 ~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 111 (135)
..+.....|||.||+.++|++.|++.|.+||.|..|.-++| ||||-|.+.++|.+|++.+++..|.|..|.|
T Consensus 254 d~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~~iEv 325 (506)
T KOG0117|consen 254 DTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKETNGKELDGSPIEV 325 (506)
T ss_pred hhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHHhcCceecCceEEE
Confidence 34566689999999999999999999999999999987655 9999999999999999999999999999999
Q ss_pred EeeCCCCCCCC
Q 032702 112 EYAKPRQPPTL 122 (135)
Q Consensus 112 ~~a~~~~~~~~ 122 (135)
.+|+|....+.
T Consensus 326 tLAKP~~k~k~ 336 (506)
T KOG0117|consen 326 TLAKPVDKKKK 336 (506)
T ss_pred EecCChhhhcc
Confidence 99998776544
No 48
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.43 E-value=2.2e-12 Score=70.85 Aligned_cols=56 Identities=46% Similarity=0.781 Sum_probs=50.3
Q ss_pred HHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEee
Q 032702 54 LRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYA 114 (135)
Q Consensus 54 l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 114 (135)
|.++|++||.|..+.+.... ++++||+|.+.++|..|+..||+..+.|+.|+|.+|
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999986653 479999999999999999999999999999999986
No 49
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.39 E-value=6.7e-12 Score=87.17 Aligned_cols=85 Identities=27% Similarity=0.462 Sum_probs=79.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEE
Q 032702 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVE 112 (135)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 112 (135)
.+..+--|||-||.++++|..|+.+|.+||.|..+++++|..|.+.+||+||...+.++|.-|+..|||..++++.|.|.
T Consensus 274 ~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVs 353 (360)
T KOG0145|consen 274 GPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVS 353 (360)
T ss_pred CCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEE
Confidence 34456789999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred eeCCC
Q 032702 113 YAKPR 117 (135)
Q Consensus 113 ~a~~~ 117 (135)
+...+
T Consensus 354 FKtnk 358 (360)
T KOG0145|consen 354 FKTNK 358 (360)
T ss_pred EecCC
Confidence 87654
No 50
>smart00361 RRM_1 RNA recognition motif.
Probab=99.38 E-value=5.2e-12 Score=72.50 Aligned_cols=62 Identities=29% Similarity=0.515 Sum_probs=54.3
Q ss_pred HHHHHHHhh----ccCCeEEEE-EeecCCC--CCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEE
Q 032702 51 DETLRDTFS----AFGEVVHAK-IVKHRES--GYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVE 112 (135)
Q Consensus 51 ~~~l~~~f~----~~g~i~~~~-~~~~~~~--~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 112 (135)
+++|+++|. .||.+..+. +..++.+ +..+|++||.|.+.++|.+|+..|++..+.|+.|+++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 467888888 999999985 6666556 8889999999999999999999999999999999863
No 51
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.38 E-value=3.3e-12 Score=96.20 Aligned_cols=88 Identities=42% Similarity=0.596 Sum_probs=78.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhh-----CC-ceeC
Q 032702 32 PQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM-----DG-KFLD 105 (135)
Q Consensus 32 ~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l-----~~-~~~~ 105 (135)
.+...+.+|||.|||+++++++|...|.+||.|..+.++.++.|+.++|.|||.|.+..++..+|..- .+ ..+.
T Consensus 287 en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~ 366 (678)
T KOG0127|consen 287 ENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLD 366 (678)
T ss_pred ccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEe
Confidence 34456689999999999999999999999999999999999999999999999999999999999865 22 4578
Q ss_pred CeEEEEEeeCCCCC
Q 032702 106 GWVIFVEYAKPRQP 119 (135)
Q Consensus 106 g~~l~v~~a~~~~~ 119 (135)
|+.|+|..+.++..
T Consensus 367 GR~Lkv~~Av~Rke 380 (678)
T KOG0127|consen 367 GRLLKVTLAVTRKE 380 (678)
T ss_pred ccEEeeeeccchHH
Confidence 99999999977654
No 52
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.38 E-value=5.5e-12 Score=95.02 Aligned_cols=85 Identities=28% Similarity=0.458 Sum_probs=77.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEeeCC
Q 032702 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKP 116 (135)
Q Consensus 37 ~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~ 116 (135)
.-.|.|.|||+.+...+|+.+|..||.+.++.++.. ..|+.+|||||+|...-+|..|++.+|+..|.|++|-|.||-+
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k-~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRK-KDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccC-CCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 568999999999999999999999999999999866 4566669999999999999999999999999999999999988
Q ss_pred CCCCCC
Q 032702 117 RQPPTL 122 (135)
Q Consensus 117 ~~~~~~ 122 (135)
+.....
T Consensus 196 Kd~ye~ 201 (678)
T KOG0127|consen 196 KDTYED 201 (678)
T ss_pred cccccc
Confidence 776443
No 53
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.37 E-value=1.1e-12 Score=91.25 Aligned_cols=89 Identities=29% Similarity=0.467 Sum_probs=83.3
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEE
Q 032702 31 RPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIF 110 (135)
Q Consensus 31 ~~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~ 110 (135)
.....++|.|||-.||....+.+|...|..||.|.+.++-.|+.|-.+++|+||-|+++.++++||..+||+.|+-++|+
T Consensus 279 qreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLK 358 (371)
T KOG0146|consen 279 QREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLK 358 (371)
T ss_pred hhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhh
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeCCCCC
Q 032702 111 VEYAKPRQP 119 (135)
Q Consensus 111 v~~a~~~~~ 119 (135)
|+..+|+..
T Consensus 359 VQLKRPkda 367 (371)
T KOG0146|consen 359 VQLKRPKDA 367 (371)
T ss_pred hhhcCcccc
Confidence 999988764
No 54
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.34 E-value=1.2e-12 Score=94.64 Aligned_cols=78 Identities=32% Similarity=0.535 Sum_probs=75.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEeeC
Q 032702 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAK 115 (135)
Q Consensus 38 ~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 115 (135)
|+||||.|.+.+.|+.|+..|..||.|+++.+.+|.-|++++||+||+|+-++.|+-|++.+|+..++|+.|+|....
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPs 191 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 191 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCC
Confidence 799999999999999999999999999999999999999999999999999999999999999999999999998543
No 55
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.33 E-value=3.2e-12 Score=89.79 Aligned_cols=73 Identities=36% Similarity=0.609 Sum_probs=69.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEeeCCC
Q 032702 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKPR 117 (135)
Q Consensus 38 ~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~ 117 (135)
..+||||||..+++.+|+.+|++||.|.+|.|+++ |+||-.++...++.|+..|++..|+|..|.|+-++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 47899999999999999999999999999999987 9999999999999999999999999999999999887
Q ss_pred C
Q 032702 118 Q 118 (135)
Q Consensus 118 ~ 118 (135)
.
T Consensus 75 s 75 (346)
T KOG0109|consen 75 S 75 (346)
T ss_pred C
Confidence 3
No 56
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=3.7e-12 Score=91.69 Aligned_cols=84 Identities=31% Similarity=0.550 Sum_probs=79.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEE
Q 032702 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVE 112 (135)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 112 (135)
-.++...|||..|.+-++.++|.-+|+.||.|..|.+++++.||....||||+|.+.+++++|.-.+++..|..+.|+|.
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVD 314 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVD 314 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEee
Confidence 34566799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCC
Q 032702 113 YAKP 116 (135)
Q Consensus 113 ~a~~ 116 (135)
++.+
T Consensus 315 FSQS 318 (479)
T KOG0415|consen 315 FSQS 318 (479)
T ss_pred hhhh
Confidence 9854
No 57
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.32 E-value=1.3e-11 Score=84.00 Aligned_cols=82 Identities=24% Similarity=0.483 Sum_probs=73.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHH----HhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEE
Q 032702 35 EPSTNLFVSGLSKRTTDETLRD----TFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIF 110 (135)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~----~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~ 110 (135)
.+..+|||.||+..+..++|++ +|++||.|..+... .+.+.+|-|||.|.+.+.|-.|+..|+|..+.|+.++
T Consensus 7 ~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~---kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mr 83 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAF---KTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMR 83 (221)
T ss_pred CCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEec---CCCCccCceEEEecChhHHHHHHHHhcCCcccCchhh
Confidence 4445999999999999998887 99999999888654 5778999999999999999999999999999999999
Q ss_pred EEeeCCCCC
Q 032702 111 VEYAKPRQP 119 (135)
Q Consensus 111 v~~a~~~~~ 119 (135)
++||+.+..
T Consensus 84 iqyA~s~sd 92 (221)
T KOG4206|consen 84 IQYAKSDSD 92 (221)
T ss_pred eecccCccc
Confidence 999986654
No 58
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.29 E-value=6.3e-12 Score=94.56 Aligned_cols=82 Identities=35% Similarity=0.599 Sum_probs=76.1
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEeeCCCC
Q 032702 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKPRQ 118 (135)
Q Consensus 39 ~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~~ 118 (135)
.+|||||-+++++++|..+|+.||.|..+.++.+..||..+||+|++|.+.++|..|+..|||+.+-|+.|+|..-.-+.
T Consensus 280 rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~ 359 (549)
T KOG0147|consen 280 RLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERV 359 (549)
T ss_pred hhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeec
Confidence 39999999999999999999999999999999997799999999999999999999999999999999999998876544
Q ss_pred CC
Q 032702 119 PP 120 (135)
Q Consensus 119 ~~ 120 (135)
..
T Consensus 360 ~~ 361 (549)
T KOG0147|consen 360 DT 361 (549)
T ss_pred cc
Confidence 43
No 59
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.28 E-value=2.6e-11 Score=81.47 Aligned_cols=83 Identities=23% Similarity=0.411 Sum_probs=76.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcc-CCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEe
Q 032702 35 EPSTNLFVSGLSKRTTDETLRDTFSAF-GEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEY 113 (135)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~-g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 113 (135)
.....+|+..+|..+.+.++..+|.+| |.+..+++-+.+.||-++|||||+|++.+.|..|.+.||+..++++.|.|.+
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~v 126 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHV 126 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEE
Confidence 344578899999999999999999988 6778888888989999999999999999999999999999999999999999
Q ss_pred eCCC
Q 032702 114 AKPR 117 (135)
Q Consensus 114 a~~~ 117 (135)
..+.
T Consensus 127 mppe 130 (214)
T KOG4208|consen 127 MPPE 130 (214)
T ss_pred eCch
Confidence 8877
No 60
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.27 E-value=1.1e-11 Score=81.84 Aligned_cols=87 Identities=39% Similarity=0.685 Sum_probs=77.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEE-EEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEE
Q 032702 32 PQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVH-AKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIF 110 (135)
Q Consensus 32 ~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~-~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~ 110 (135)
.....+..+||+||.+.+++..|.+.|+.||.+.. -.++++..||..++++|+.|.+.+.+.+|++.+++..+++++|.
T Consensus 91 ~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~it 170 (203)
T KOG0131|consen 91 KNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPIT 170 (203)
T ss_pred ccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceE
Confidence 34455589999999999999999999999998755 47888888999999999999999999999999999999999999
Q ss_pred EEeeCCCC
Q 032702 111 VEYAKPRQ 118 (135)
Q Consensus 111 v~~a~~~~ 118 (135)
|.++..+.
T Consensus 171 v~ya~k~~ 178 (203)
T KOG0131|consen 171 VSYAFKKD 178 (203)
T ss_pred EEEEEecC
Confidence 99996554
No 61
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.26 E-value=6.8e-11 Score=84.86 Aligned_cols=84 Identities=27% Similarity=0.589 Sum_probs=72.1
Q ss_pred CCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCc-eeCC
Q 032702 28 PPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGK-FLDG 106 (135)
Q Consensus 28 ~~~~~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~-~~~g 106 (135)
...++.+....+|||++|...+++.+|.++|.+||+|..+.+.... ++|||+|.+.++|+.|.+.+-.. .+.|
T Consensus 219 ~lepPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n~lvI~G 292 (377)
T KOG0153|consen 219 TLEPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFNKLVING 292 (377)
T ss_pred ccCCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcceeeecc
Confidence 3344566777899999999999999999999999999999987763 49999999999999988765544 5899
Q ss_pred eEEEEEeeCCC
Q 032702 107 WVIFVEYAKPR 117 (135)
Q Consensus 107 ~~l~v~~a~~~ 117 (135)
.+|+|.|..+.
T Consensus 293 ~Rl~i~Wg~~~ 303 (377)
T KOG0153|consen 293 FRLKIKWGRPK 303 (377)
T ss_pred eEEEEEeCCCc
Confidence 99999999983
No 62
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=3.2e-11 Score=89.26 Aligned_cols=80 Identities=35% Similarity=0.669 Sum_probs=74.8
Q ss_pred EEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEeeCCCCC
Q 032702 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKPRQP 119 (135)
Q Consensus 40 v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~~~ 119 (135)
|||.||+++++..+|.++|..||+|.+|++..+ .+| .+|+ ||+|.+.++|+.|++.+||..+.+++|.|-....++.
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~-~~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~e 155 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATD-ENG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEE 155 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEc-CCC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhh
Confidence 999999999999999999999999999999998 566 8899 9999999999999999999999999999999987776
Q ss_pred CCC
Q 032702 120 PTL 122 (135)
Q Consensus 120 ~~~ 122 (135)
+..
T Consensus 156 r~~ 158 (369)
T KOG0123|consen 156 REA 158 (369)
T ss_pred hcc
Confidence 543
No 63
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.20 E-value=1.7e-10 Score=88.80 Aligned_cols=76 Identities=21% Similarity=0.394 Sum_probs=61.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhcc------------CCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhC
Q 032702 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAF------------GEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100 (135)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~------------g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~ 100 (135)
......+|||+|||+.+++++|+++|..+ +.|..+.+ .+.+|||||+|.+.++|..|+. |+
T Consensus 171 ~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al~-l~ 243 (509)
T TIGR01642 171 ATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAMA-LD 243 (509)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhhc-CC
Confidence 34556799999999999999999999864 22333333 3356799999999999999995 99
Q ss_pred CceeCCeEEEEEeeC
Q 032702 101 GKFLDGWVIFVEYAK 115 (135)
Q Consensus 101 ~~~~~g~~l~v~~a~ 115 (135)
+..+.|..|+|....
T Consensus 244 g~~~~g~~l~v~r~~ 258 (509)
T TIGR01642 244 SIIYSNVFLKIRRPH 258 (509)
T ss_pred CeEeeCceeEecCcc
Confidence 999999999997553
No 64
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.15 E-value=1.5e-10 Score=83.94 Aligned_cols=86 Identities=22% Similarity=0.429 Sum_probs=78.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEee
Q 032702 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYA 114 (135)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 114 (135)
..-.+|||..+.++.++.+|+.+|+-||.|..|.+-++...+.++||+|++|.+..+...|+..+|-+.++|.-|+|-.+
T Consensus 208 k~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~ 287 (544)
T KOG0124|consen 208 KKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 287 (544)
T ss_pred HhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccc
Confidence 34469999999999999999999999999999999999777789999999999999999999999999999999999988
Q ss_pred CCCCCC
Q 032702 115 KPRQPP 120 (135)
Q Consensus 115 ~~~~~~ 120 (135)
...++.
T Consensus 288 vTPP~a 293 (544)
T KOG0124|consen 288 VTPPDA 293 (544)
T ss_pred cCCCch
Confidence 766653
No 65
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.12 E-value=1.1e-09 Score=81.94 Aligned_cols=87 Identities=25% Similarity=0.362 Sum_probs=72.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEee
Q 032702 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYA 114 (135)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 114 (135)
....+|||.|||.+++..+|+++|..||.|+...|......++..+|+||+|.+...++.++.+- -..+++++|.|+..
T Consensus 286 ~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig~~kl~Veek 364 (419)
T KOG0116|consen 286 ADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-PLEIGGRKLNVEEK 364 (419)
T ss_pred ecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC-ccccCCeeEEEEec
Confidence 33456999999999999999999999999999887664333444599999999999999999854 66799999999999
Q ss_pred CCCCCCCC
Q 032702 115 KPRQPPTL 122 (135)
Q Consensus 115 ~~~~~~~~ 122 (135)
++.....+
T Consensus 365 ~~~~~g~~ 372 (419)
T KOG0116|consen 365 RPGFRGNG 372 (419)
T ss_pred cccccccc
Confidence 87665543
No 66
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.11 E-value=1.8e-10 Score=81.07 Aligned_cols=79 Identities=32% Similarity=0.541 Sum_probs=73.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEe
Q 032702 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEY 113 (135)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 113 (135)
.....+++|+||-+.++..+|+..|++||.+.+|.++++ |+||-|+-.++|..|++.|++..+.|+.++|+.
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~ 146 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQL 146 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhcccccccccceeeeee
Confidence 346679999999999999999999999999999999887 999999999999999999999999999999999
Q ss_pred eCCCCCC
Q 032702 114 AKPRQPP 120 (135)
Q Consensus 114 a~~~~~~ 120 (135)
+.++-..
T Consensus 147 stsrlrt 153 (346)
T KOG0109|consen 147 STSRLRT 153 (346)
T ss_pred ecccccc
Confidence 9876653
No 67
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.11 E-value=2e-10 Score=80.21 Aligned_cols=85 Identities=26% Similarity=0.507 Sum_probs=76.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCce-e--CCeEEEE
Q 032702 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKF-L--DGWVIFV 111 (135)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-~--~g~~l~v 111 (135)
.+++.+|||.|...-.|++++.+|..||.+.+|.+.+. ..|.++|++||.|.+.-+|..||..||+.. + -...|.|
T Consensus 17 ~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg-~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVV 95 (371)
T KOG0146|consen 17 GDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRG-PDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVV 95 (371)
T ss_pred ccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecC-CCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEE
Confidence 36789999999999999999999999999999999888 578899999999999999999999999986 3 3457999
Q ss_pred EeeCCCCCC
Q 032702 112 EYAKPRQPP 120 (135)
Q Consensus 112 ~~a~~~~~~ 120 (135)
.++..++.+
T Consensus 96 K~ADTdkER 104 (371)
T KOG0146|consen 96 KFADTDKER 104 (371)
T ss_pred EeccchHHH
Confidence 999887764
No 68
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.10 E-value=1.1e-09 Score=85.70 Aligned_cols=77 Identities=26% Similarity=0.479 Sum_probs=70.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEeeCC
Q 032702 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKP 116 (135)
Q Consensus 37 ~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~ 116 (135)
++|||||+|+..+++.+|..+|+.||+|..+.+... ++||||+....++|.+|+..|.+..+.++.|+|.|+..
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVG 494 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeecc
Confidence 379999999999999999999999999999988765 46999999999999999999999999999999999975
Q ss_pred CCC
Q 032702 117 RQP 119 (135)
Q Consensus 117 ~~~ 119 (135)
+-.
T Consensus 495 ~G~ 497 (894)
T KOG0132|consen 495 KGP 497 (894)
T ss_pred CCc
Confidence 544
No 69
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.09 E-value=3.4e-10 Score=81.74 Aligned_cols=86 Identities=27% Similarity=0.466 Sum_probs=77.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEeeC
Q 032702 36 PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAK 115 (135)
Q Consensus 36 ~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 115 (135)
....|||++||.++++.+|++.|++||.|..+.++.|..+.+.++++||.|.+++++.+++. ..-..+.++.+.|..|.
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~ 174 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAI 174 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeecc
Confidence 35599999999999999999999999999999999999899999999999999999988886 66677999999999999
Q ss_pred CCCCCCC
Q 032702 116 PRQPPTL 122 (135)
Q Consensus 116 ~~~~~~~ 122 (135)
++.....
T Consensus 175 pk~~~~~ 181 (311)
T KOG4205|consen 175 PKEVMQS 181 (311)
T ss_pred chhhccc
Confidence 8887543
No 70
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.09 E-value=1.9e-10 Score=82.96 Aligned_cols=88 Identities=38% Similarity=0.574 Sum_probs=78.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEeeC
Q 032702 36 PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAK 115 (135)
Q Consensus 36 ~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 115 (135)
+.+++||++|.|+++++.|++.|.+||++.++.++.++.++..++++||+|.+.+...+++. .....+.|+.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 77899999999999999999999999999999999999999999999999998888777776 34467899999999999
Q ss_pred CCCCCCCCC
Q 032702 116 PRQPPTLPS 124 (135)
Q Consensus 116 ~~~~~~~~~ 124 (135)
++.......
T Consensus 84 ~r~~~~~~~ 92 (311)
T KOG4205|consen 84 SREDQTKVG 92 (311)
T ss_pred Ccccccccc
Confidence 888765544
No 71
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=99.08 E-value=2.2e-09 Score=64.98 Aligned_cols=78 Identities=19% Similarity=0.289 Sum_probs=67.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhc--cCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeC----CeEEEE
Q 032702 38 TNLFVSGLSKRTTDETLRDTFSA--FGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLD----GWVIFV 111 (135)
Q Consensus 38 ~~v~v~nlp~~~~~~~l~~~f~~--~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~----g~~l~v 111 (135)
.||+|.|||...+.++|.+++.. .|....+.++.|..++.+.|||||.|.+.+.+......++|..+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 58999999999999999999964 367888999999999999999999999999999999999999864 344666
Q ss_pred EeeC
Q 032702 112 EYAK 115 (135)
Q Consensus 112 ~~a~ 115 (135)
.+|+
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 6664
No 72
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=99.05 E-value=1.5e-09 Score=75.72 Aligned_cols=85 Identities=26% Similarity=0.367 Sum_probs=76.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEe
Q 032702 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEY 113 (135)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 113 (135)
+.....|+|.|||..+.+++|+++|..||.++.+.+..+ .+|.+.|.|-|.|...++|.++++.+++..+.|+.|++..
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~-~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYD-RAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccC-CCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 344478999999999999999999999998888888888 5899999999999999999999999999989999999988
Q ss_pred eCCCCC
Q 032702 114 AKPRQP 119 (135)
Q Consensus 114 a~~~~~ 119 (135)
..+...
T Consensus 159 i~~~~~ 164 (243)
T KOG0533|consen 159 ISSPSQ 164 (243)
T ss_pred ecCccc
Confidence 754443
No 73
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.04 E-value=6.9e-10 Score=82.12 Aligned_cols=76 Identities=37% Similarity=0.493 Sum_probs=67.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEe
Q 032702 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEY 113 (135)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 113 (135)
....++|||.|||.++|+..|++-|..+|.+....++ .+|+.+| .|.|.++++|++|+..+++..+.|+.|+|.+
T Consensus 533 arKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadim---e~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y 607 (608)
T KOG4212|consen 533 ARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIM---ENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTY 607 (608)
T ss_pred cccccEEEEecCCccccHHHHHHHHHhccceehhhhh---ccCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeee
Confidence 3556899999999999999999999999999998884 3466655 8999999999999999999999999999987
Q ss_pred e
Q 032702 114 A 114 (135)
Q Consensus 114 a 114 (135)
.
T Consensus 608 ~ 608 (608)
T KOG4212|consen 608 F 608 (608)
T ss_pred C
Confidence 3
No 74
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=99.04 E-value=4e-10 Score=78.01 Aligned_cols=90 Identities=24% Similarity=0.467 Sum_probs=80.5
Q ss_pred CCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCe
Q 032702 28 PPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGW 107 (135)
Q Consensus 28 ~~~~~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~ 107 (135)
+....-+..+.+||+|.|-..++++.|.+.|.+|.....-.+++++.||+.+||+||-|.+..++.+|+..+++..++++
T Consensus 181 Psl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsr 260 (290)
T KOG0226|consen 181 PSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSR 260 (290)
T ss_pred cccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccc
Confidence 33344567788999999999999999999999999988899999999999999999999999999999999999999999
Q ss_pred EEEEEeeCCC
Q 032702 108 VIFVEYAKPR 117 (135)
Q Consensus 108 ~l~v~~a~~~ 117 (135)
.|+++-+.-+
T Consensus 261 piklRkS~wk 270 (290)
T KOG0226|consen 261 PIKLRKSEWK 270 (290)
T ss_pred hhHhhhhhHH
Confidence 9988766433
No 75
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.03 E-value=1.1e-08 Score=69.85 Aligned_cols=88 Identities=20% Similarity=0.317 Sum_probs=69.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCC-CCcccEEEEEeCCHHHHHHHHHhhCCceeC---Ce
Q 032702 32 PQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRES-GYSKGFGFVKYATLEAAGKAIEGMDGKFLD---GW 107 (135)
Q Consensus 32 ~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~-~~~~g~afv~f~~~~~a~~a~~~l~~~~~~---g~ 107 (135)
......+++||.+||.++.-.+|..+|..|...+.+.+...... ...+-++|+.|.+.++|.+|+..|||..++ +.
T Consensus 29 ~~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~s 108 (284)
T KOG1457|consen 29 DEPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGS 108 (284)
T ss_pred ccccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCc
Confidence 33455789999999999999999999999876666655433222 234579999999999999999999999874 77
Q ss_pred EEEEEeeCCCCC
Q 032702 108 VIFVEYAKPRQP 119 (135)
Q Consensus 108 ~l~v~~a~~~~~ 119 (135)
.|++++++.-..
T Consensus 109 tLhiElAKSNtK 120 (284)
T KOG1457|consen 109 TLHIELAKSNTK 120 (284)
T ss_pred eeEeeehhcCcc
Confidence 899999975443
No 76
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.02 E-value=3.3e-10 Score=87.60 Aligned_cols=84 Identities=27% Similarity=0.515 Sum_probs=77.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEeeC
Q 032702 36 PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAK 115 (135)
Q Consensus 36 ~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 115 (135)
....|.|.|||+.++..+++.+|..||.+..|+++.....+.++|+|||+|-+.++|..|+.+|.+..+.|+.|.++|++
T Consensus 612 ~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~ 691 (725)
T KOG0110|consen 612 KGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAK 691 (725)
T ss_pred ccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhc
Confidence 36799999999999999999999999999999998775566789999999999999999999999888999999999998
Q ss_pred CCCC
Q 032702 116 PRQP 119 (135)
Q Consensus 116 ~~~~ 119 (135)
....
T Consensus 692 ~d~~ 695 (725)
T KOG0110|consen 692 SDNT 695 (725)
T ss_pred cchH
Confidence 7654
No 77
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.01 E-value=1.9e-09 Score=79.91 Aligned_cols=76 Identities=24% Similarity=0.445 Sum_probs=70.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEeeCCC
Q 032702 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKPR 117 (135)
Q Consensus 38 ~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~ 117 (135)
..+||| +++++..|.++|..+|.+..+++-++. | +.|||||.|.++.+|++|++.+|...+.|++|++.|+...
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 368998 999999999999999999999999986 5 9999999999999999999999999999999999999766
Q ss_pred CC
Q 032702 118 QP 119 (135)
Q Consensus 118 ~~ 119 (135)
+.
T Consensus 76 ~~ 77 (369)
T KOG0123|consen 76 PS 77 (369)
T ss_pred Cc
Confidence 54
No 78
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.00 E-value=6.5e-10 Score=84.02 Aligned_cols=72 Identities=22% Similarity=0.401 Sum_probs=64.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEE
Q 032702 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIF 110 (135)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~ 110 (135)
+....+|+|-|||..+++++|..+|..||+|+.++..+. ..++.||+|.|+.+|++|+++|++..+.|+.|+
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~-----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN-----KRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc-----cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 455679999999999999999999999999999765433 467999999999999999999999999999988
No 79
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.99 E-value=2.5e-09 Score=81.60 Aligned_cols=87 Identities=38% Similarity=0.483 Sum_probs=79.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEeeC
Q 032702 36 PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAK 115 (135)
Q Consensus 36 ~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 115 (135)
-+..+||.+|...+.-.+|+.+|.+||.|.-.+|+..-.+.-.++|+||++.+..+|.++|.+||...+.|+-|.|+-++
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 35799999999999999999999999999999999887777789999999999999999999999999999999999998
Q ss_pred CCCCCCC
Q 032702 116 PRQPPTL 122 (135)
Q Consensus 116 ~~~~~~~ 122 (135)
..+-.+.
T Consensus 484 NEp~Gkk 490 (940)
T KOG4661|consen 484 NEPGGKK 490 (940)
T ss_pred cCccccc
Confidence 7765544
No 80
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.94 E-value=1.5e-08 Score=73.00 Aligned_cols=81 Identities=28% Similarity=0.363 Sum_probs=72.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeE--------EEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeC
Q 032702 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVV--------HAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLD 105 (135)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~--------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~ 105 (135)
+.....|||.|||.++|.+++.++|..+|.|. .|.+..+ ..|..+|-|+++|...++..-|+..|++..+.
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd-~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRD-NQGKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEec-CCCCccCceEEEeecccHHHHHHHHhCccccc
Confidence 44456799999999999999999999998653 3677777 56999999999999999999999999999999
Q ss_pred CeEEEEEeeC
Q 032702 106 GWVIFVEYAK 115 (135)
Q Consensus 106 g~~l~v~~a~ 115 (135)
|++|+|+.|+
T Consensus 210 g~~~rVerAk 219 (382)
T KOG1548|consen 210 GKKLRVERAK 219 (382)
T ss_pred CcEEEEehhh
Confidence 9999999986
No 81
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.92 E-value=6.8e-09 Score=80.52 Aligned_cols=79 Identities=37% Similarity=0.586 Sum_probs=69.6
Q ss_pred EEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCC---CcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEeeCC
Q 032702 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESG---YSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKP 116 (135)
Q Consensus 40 v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~---~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~ 116 (135)
|||.||+++.+.++|...|...|.|..+.|...+... .+.||+||+|.+.++|+.|++.|+|..+.|+.|.|+++..
T Consensus 518 lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~ 597 (725)
T KOG0110|consen 518 LFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISEN 597 (725)
T ss_pred hhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccC
Confidence 9999999999999999999999999998876654221 2459999999999999999999999999999999999983
Q ss_pred CC
Q 032702 117 RQ 118 (135)
Q Consensus 117 ~~ 118 (135)
++
T Consensus 598 k~ 599 (725)
T KOG0110|consen 598 KP 599 (725)
T ss_pred cc
Confidence 33
No 82
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.91 E-value=2.7e-09 Score=73.08 Aligned_cols=74 Identities=26% Similarity=0.503 Sum_probs=66.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEeeCCC
Q 032702 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKPR 117 (135)
Q Consensus 38 ~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~ 117 (135)
..+||++||+.+.+.+|..+|..||.+..+.+... |+||+|.+..+|..|+..|++..+.+..+.|+++...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~g--------f~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKNG--------FGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeecc--------cceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 46899999999999999999999999999987543 8899999999999999999999999988999999865
Q ss_pred CC
Q 032702 118 QP 119 (135)
Q Consensus 118 ~~ 119 (135)
.-
T Consensus 74 ~~ 75 (216)
T KOG0106|consen 74 RR 75 (216)
T ss_pred cc
Confidence 43
No 83
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.86 E-value=2.4e-08 Score=77.77 Aligned_cols=89 Identities=24% Similarity=0.423 Sum_probs=77.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCC---CCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEE
Q 032702 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRES---GYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIF 110 (135)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~---~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~ 110 (135)
++....+|++||++.+++..|...|..||.+..++++..+.. ....-++||.|-+..++++|++.|+|..+.+.+++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 455679999999999999999999999999999999887522 33556999999999999999999999999999999
Q ss_pred EEeeCCCCCCCC
Q 032702 111 VEYAKPRQPPTL 122 (135)
Q Consensus 111 v~~a~~~~~~~~ 122 (135)
+-|+++-+.+..
T Consensus 251 ~gWgk~V~ip~~ 262 (877)
T KOG0151|consen 251 LGWGKAVPIPNI 262 (877)
T ss_pred eccccccccCCc
Confidence 999976665443
No 84
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.80 E-value=1.5e-08 Score=70.72 Aligned_cols=86 Identities=20% Similarity=0.339 Sum_probs=79.2
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEE
Q 032702 32 PQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFV 111 (135)
Q Consensus 32 ~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 111 (135)
..+.+...+||+|+...++..+++..|+.+|.+..+.+..++.++.+++++||+|.+.+....++. |++..+.++.+.|
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~v 174 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEV 174 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccccccccee
Confidence 456677899999999999999999999999999999999998888899999999999999999999 9999999999999
Q ss_pred EeeCCCC
Q 032702 112 EYAKPRQ 118 (135)
Q Consensus 112 ~~a~~~~ 118 (135)
.+.+...
T Consensus 175 t~~r~~~ 181 (231)
T KOG4209|consen 175 TLKRTNV 181 (231)
T ss_pred eeeeeec
Confidence 9987653
No 85
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.76 E-value=3.9e-09 Score=71.84 Aligned_cols=81 Identities=20% Similarity=0.167 Sum_probs=71.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEE
Q 032702 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVE 112 (135)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 112 (135)
......+|||+|+...++++.|.++|-+-|.|.++.|..++ .+..+ ||||.|.++.+..-|+..++|..+.+.++++.
T Consensus 5 aae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~ 82 (267)
T KOG4454|consen 5 AAEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRT 82 (267)
T ss_pred CcchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhcc
Confidence 34556799999999999999999999999999999998874 45556 99999999999999999999999999888877
Q ss_pred eeC
Q 032702 113 YAK 115 (135)
Q Consensus 113 ~a~ 115 (135)
+-.
T Consensus 83 ~r~ 85 (267)
T KOG4454|consen 83 LRC 85 (267)
T ss_pred ccc
Confidence 653
No 86
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.68 E-value=1.5e-07 Score=70.61 Aligned_cols=82 Identities=22% Similarity=0.304 Sum_probs=69.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEe
Q 032702 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEY 113 (135)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 113 (135)
......|-+.+|||.+|+++|.+||...+ |..+.+.+ .+|+..|-|||+|.+.++++.|++ .+...+..+-|.|-.
T Consensus 7 ~~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~ 82 (510)
T KOG4211|consen 7 GSTAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPR--RNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFT 82 (510)
T ss_pred CCcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEec--cCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEc
Confidence 34556788899999999999999999875 77755544 579999999999999999999998 787889999999999
Q ss_pred eCCCCC
Q 032702 114 AKPRQP 119 (135)
Q Consensus 114 a~~~~~ 119 (135)
+...+.
T Consensus 83 ~~~~e~ 88 (510)
T KOG4211|consen 83 AGGAEA 88 (510)
T ss_pred cCCccc
Confidence 876664
No 87
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.66 E-value=5.5e-08 Score=73.99 Aligned_cols=89 Identities=26% Similarity=0.484 Sum_probs=81.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEE
Q 032702 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVE 112 (135)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 112 (135)
.....+.+||++||...++.++.+++..||.+....++.+..+|-++||+|.+|.+......|+..|||..+++.+|.|+
T Consensus 285 ~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq 364 (500)
T KOG0120|consen 285 VPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQ 364 (500)
T ss_pred cccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEee
Confidence 34556799999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred eeCCCCCCC
Q 032702 113 YAKPRQPPT 121 (135)
Q Consensus 113 ~a~~~~~~~ 121 (135)
.|.......
T Consensus 365 ~A~~g~~~~ 373 (500)
T KOG0120|consen 365 RAIVGASNA 373 (500)
T ss_pred hhhccchhc
Confidence 997666543
No 88
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.62 E-value=9.4e-09 Score=77.78 Aligned_cols=90 Identities=24% Similarity=0.438 Sum_probs=81.9
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEE
Q 032702 30 QRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVI 109 (135)
Q Consensus 30 ~~~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l 109 (135)
..+++.+..++|+-.|.-.++..+|.+||..+|.|..+.++.++.++..+|.+||+|.+.++...|+. |.|..+.|.+|
T Consensus 172 l~~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv 250 (549)
T KOG0147|consen 172 LSPEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPV 250 (549)
T ss_pred CCchHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCcee
Confidence 34556677899999999999999999999999999999999999999999999999999999999995 99999999999
Q ss_pred EEEeeCCCCCC
Q 032702 110 FVEYAKPRQPP 120 (135)
Q Consensus 110 ~v~~a~~~~~~ 120 (135)
.|+.+...+++
T Consensus 251 ~vq~sEaeknr 261 (549)
T KOG0147|consen 251 IVQLSEAEKNR 261 (549)
T ss_pred EecccHHHHHH
Confidence 99998777665
No 89
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.44 E-value=6.5e-06 Score=60.40 Aligned_cols=81 Identities=22% Similarity=0.304 Sum_probs=71.3
Q ss_pred CCCCCCCeEEEcCCC-CCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEE
Q 032702 32 PQAEPSTNLFVSGLS-KRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIF 110 (135)
Q Consensus 32 ~~~~~~~~v~v~nlp-~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~ 110 (135)
....+++.++|.+|. ..+..+.|..+|..||.|+.+++++.+ .|.|.|+..+....++++.+||+..+.|.+|.
T Consensus 282 ~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~ 356 (494)
T KOG1456|consen 282 GGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLN 356 (494)
T ss_pred CCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEE
Confidence 445678899999998 567778899999999999999998873 35999999999999999999999999999999
Q ss_pred EEeeCCC
Q 032702 111 VEYAKPR 117 (135)
Q Consensus 111 v~~a~~~ 117 (135)
|..++..
T Consensus 357 v~~SkQ~ 363 (494)
T KOG1456|consen 357 VCVSKQN 363 (494)
T ss_pred Eeecccc
Confidence 9998743
No 90
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.39 E-value=4.3e-07 Score=62.27 Aligned_cols=65 Identities=22% Similarity=0.425 Sum_probs=55.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCcee
Q 032702 36 PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFL 104 (135)
Q Consensus 36 ~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~ 104 (135)
...++||.||-..++|++|+.+|..|....-+++... . ....+|++|++.+.|..|+.+|+|..+
T Consensus 209 acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~--~--g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 209 ACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR--G--GMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred hhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC--C--CcceEeecHHHHHHHHHHHHHhhccee
Confidence 3459999999999999999999999988777776432 2 345999999999999999999999876
No 91
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.33 E-value=4.6e-06 Score=61.73 Aligned_cols=76 Identities=25% Similarity=0.366 Sum_probs=67.2
Q ss_pred CCeEEEcCCC-CCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEeeC
Q 032702 37 STNLFVSGLS-KRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAK 115 (135)
Q Consensus 37 ~~~v~v~nlp-~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 115 (135)
...|.|.||. ..+|.+.|.-+|..||+|..+++...+. ..|+|++.+...|+-|+++|+|..+.|++|+|.+++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 4677777665 7899999999999999999999887643 489999999999999999999999999999999997
Q ss_pred CC
Q 032702 116 PR 117 (135)
Q Consensus 116 ~~ 117 (135)
..
T Consensus 372 H~ 373 (492)
T KOG1190|consen 372 HT 373 (492)
T ss_pred Cc
Confidence 43
No 92
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.32 E-value=7.3e-06 Score=56.18 Aligned_cols=78 Identities=23% Similarity=0.431 Sum_probs=67.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeC-CeEEEE
Q 032702 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLD-GWVIFV 111 (135)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~-g~~l~v 111 (135)
...+...+|+.|||..++.+.|..+|++|...++++++..+ .+.+||+|.+...+..|...+++..+. ...++|
T Consensus 142 ~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i 216 (221)
T KOG4206|consen 142 MAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQI 216 (221)
T ss_pred CCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEe
Confidence 35667799999999999999999999999999999987763 359999999999999999999999876 778888
Q ss_pred EeeC
Q 032702 112 EYAK 115 (135)
Q Consensus 112 ~~a~ 115 (135)
.+++
T Consensus 217 ~~a~ 220 (221)
T KOG4206|consen 217 TFAK 220 (221)
T ss_pred cccC
Confidence 7764
No 93
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.28 E-value=8.2e-06 Score=47.78 Aligned_cols=70 Identities=21% Similarity=0.350 Sum_probs=46.1
Q ss_pred eEEEcCCCCCCCHHHHHH----HhhccC-CeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEe
Q 032702 39 NLFVSGLSKRTTDETLRD----TFSAFG-EVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEY 113 (135)
Q Consensus 39 ~v~v~nlp~~~~~~~l~~----~f~~~g-~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 113 (135)
.|+|.|||.+.+...++. ++..+| .+..+ . .+.|++.|.+.+.|.+|.+.|++-.+.|++|.|++
T Consensus 4 ~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v--~--------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~ 73 (90)
T PF11608_consen 4 LLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV--S--------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSF 73 (90)
T ss_dssp EEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEES
T ss_pred EEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE--e--------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEE
Confidence 689999999999876554 444665 44443 1 14899999999999999999999999999999999
Q ss_pred eCCCC
Q 032702 114 AKPRQ 118 (135)
Q Consensus 114 a~~~~ 118 (135)
.....
T Consensus 74 ~~~~r 78 (90)
T PF11608_consen 74 SPKNR 78 (90)
T ss_dssp S--S-
T ss_pred cCCcc
Confidence 85443
No 94
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.24 E-value=7.1e-06 Score=61.88 Aligned_cols=79 Identities=19% Similarity=0.208 Sum_probs=63.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEE-EEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEe
Q 032702 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVH-AKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEY 113 (135)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~-~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 113 (135)
.....|-+.+||+.+++++|.+||...--+.. +.++.+ ..++..|-|||+|.+.++++.|+. -|...++.+-|.|..
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d-~rgR~tGEAfVqF~sqe~ae~Al~-rhre~iGhRYIEvF~ 178 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMD-QRGRPTGEAFVQFESQESAEIALG-RHRENIGHRYIEVFR 178 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeecc-CCCCcccceEEEecCHHHHHHHHH-HHHHhhccceEEeeh
Confidence 46679999999999999999999987654433 445555 567889999999999999999998 455667777787776
Q ss_pred eC
Q 032702 114 AK 115 (135)
Q Consensus 114 a~ 115 (135)
+.
T Consensus 179 Ss 180 (510)
T KOG4211|consen 179 SS 180 (510)
T ss_pred hH
Confidence 64
No 95
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.23 E-value=2.4e-05 Score=61.55 Aligned_cols=78 Identities=19% Similarity=0.298 Sum_probs=66.9
Q ss_pred CCCC-eEEEcCCCCCCCHHHHHHHhhccCCe-EEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEE
Q 032702 35 EPST-NLFVSGLSKRTTDETLRDTFSAFGEV-VHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVE 112 (135)
Q Consensus 35 ~~~~-~v~v~nlp~~~~~~~l~~~f~~~g~i-~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 112 (135)
.+++ .|-+.|+|++++-++|.+||.-|--+ .++.+... ..|+.+|-|.|.|++.++|.+|...|++..|.++.+++.
T Consensus 864 ~pGp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~n-d~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~ 942 (944)
T KOG4307|consen 864 SPGPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRN-DDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLR 942 (944)
T ss_pred CCCCeEEEecCCCccccHHHHHHHhcccccCCCceeEeec-CCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEE
Confidence 3445 77789999999999999999998633 55555555 679999999999999999999999999999999999886
Q ss_pred e
Q 032702 113 Y 113 (135)
Q Consensus 113 ~ 113 (135)
+
T Consensus 943 i 943 (944)
T KOG4307|consen 943 I 943 (944)
T ss_pred e
Confidence 4
No 96
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.21 E-value=1.9e-06 Score=62.54 Aligned_cols=86 Identities=30% Similarity=0.341 Sum_probs=76.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeE--------EEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeC
Q 032702 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVV--------HAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLD 105 (135)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~--------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~ 105 (135)
.....+|||-++|..+++.+|.++|.+.+.|+ .+.+.+++.|+..++-|.|.|.+...|++|+.-+.+..+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 45567999999999999999999999988663 3567778889999999999999999999999999999999
Q ss_pred CeEEEEEeeCCCCC
Q 032702 106 GWVIFVEYAKPRQP 119 (135)
Q Consensus 106 g~~l~v~~a~~~~~ 119 (135)
+..|+|..+..+..
T Consensus 143 gn~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 143 GNTIKVSLAERRTG 156 (351)
T ss_pred CCCchhhhhhhccC
Confidence 99999999876653
No 97
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=98.18 E-value=9.4e-07 Score=61.57 Aligned_cols=73 Identities=19% Similarity=0.300 Sum_probs=63.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCC--------CCc----ccEEEEEeCCHHHHHHHHHhhCCce
Q 032702 36 PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRES--------GYS----KGFGFVKYATLEAAGKAIEGMDGKF 103 (135)
Q Consensus 36 ~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~--------~~~----~g~afv~f~~~~~a~~a~~~l~~~~ 103 (135)
..-.||+++||+.+....|+++|..||.|-.+++.....+ |.+ ..-++|+|.+...|..+...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4469999999999999999999999999999999876544 222 2348999999999999999999999
Q ss_pred eCCeE
Q 032702 104 LDGWV 108 (135)
Q Consensus 104 ~~g~~ 108 (135)
|+|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 98865
No 98
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.17 E-value=7.9e-06 Score=50.41 Aligned_cols=60 Identities=35% Similarity=0.527 Sum_probs=39.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCc
Q 032702 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGK 102 (135)
Q Consensus 37 ~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~ 102 (135)
++.|.|.+++..++.++|+++|..||.|..|.+..+- ..|||.|.+.++|+.++..+...
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHT
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHHHHHhc
Confidence 3578888899999999999999999999999886653 28999999999999998876654
No 99
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.07 E-value=3.1e-06 Score=61.59 Aligned_cols=79 Identities=23% Similarity=0.258 Sum_probs=67.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccC--CeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEe
Q 032702 36 PSTNLFVSGLSKRTTDETLRDTFSAFG--EVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEY 113 (135)
Q Consensus 36 ~~~~v~v~nlp~~~~~~~l~~~f~~~g--~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 113 (135)
...-+|||||-|++|+++|.+.+...| ++.++++...+.+|.++|||++..-+..+.+..++.|....+.|+.-.|..
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~ 158 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLS 158 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeec
Confidence 345789999999999999999998766 677788888888999999999999999999999999999999987655544
Q ss_pred e
Q 032702 114 A 114 (135)
Q Consensus 114 a 114 (135)
.
T Consensus 159 ~ 159 (498)
T KOG4849|consen 159 Y 159 (498)
T ss_pred c
Confidence 3
No 100
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.05 E-value=9e-06 Score=55.97 Aligned_cols=77 Identities=36% Similarity=0.541 Sum_probs=65.1
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEE
Q 032702 31 RPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIF 110 (135)
Q Consensus 31 ~~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~ 110 (135)
.++....+.+.|.++...+.+.+|.+.|..+|.+....+ ..+.+||+|...+++..|+..|++..+.++.|.
T Consensus 93 ~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~ 164 (216)
T KOG0106|consen 93 RPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRIS 164 (216)
T ss_pred CCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhcchhccchhhcCceee
Confidence 344566779999999999999999999999998844433 234999999999999999999999999999999
Q ss_pred EEeeC
Q 032702 111 VEYAK 115 (135)
Q Consensus 111 v~~a~ 115 (135)
+...-
T Consensus 165 ~~~~~ 169 (216)
T KOG0106|consen 165 VEKNS 169 (216)
T ss_pred ecccC
Confidence 95543
No 101
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.05 E-value=6.1e-06 Score=59.46 Aligned_cols=86 Identities=27% Similarity=0.486 Sum_probs=77.1
Q ss_pred CCCCCeEE-EcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEE
Q 032702 34 AEPSTNLF-VSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVE 112 (135)
Q Consensus 34 ~~~~~~v~-v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 112 (135)
.....++| +++++..+++++|+..|..+|.+..+++..+..++...|++|++|.+......++.. +...+.++.+.+.
T Consensus 181 ~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 259 (285)
T KOG4210|consen 181 SGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLE 259 (285)
T ss_pred cCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccc
Confidence 34455666 899999999999999999999999999999999999999999999999999999987 8888999999999
Q ss_pred eeCCCCCC
Q 032702 113 YAKPRQPP 120 (135)
Q Consensus 113 ~a~~~~~~ 120 (135)
...+....
T Consensus 260 ~~~~~~~~ 267 (285)
T KOG4210|consen 260 EDEPRPKS 267 (285)
T ss_pred cCCCCccc
Confidence 99887664
No 102
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.00 E-value=9.2e-06 Score=60.16 Aligned_cols=80 Identities=26% Similarity=0.360 Sum_probs=65.4
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCce--eCCeE
Q 032702 31 RPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKF--LDGWV 108 (135)
Q Consensus 31 ~~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~--~~g~~ 108 (135)
.+...++..|.++|||++++|.+|-.++..||.+..+.+...++ .||++|.++++|..-+..+.... +.|+.
T Consensus 22 ~~~~~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGkn------QAflem~d~~sAvtmv~~y~~~~p~lr~~~ 95 (492)
T KOG1190|consen 22 RSMAEPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGKN------QAFLEMADEESAVTMVNYYTSVTPVLRGQP 95 (492)
T ss_pred ccccCCcceeEeccCCccccHHHHHHhcccccceeeeeeeccch------hhhhhhcchhhhhheeecccccCccccCcc
Confidence 34445788999999999999999999999999999998876643 89999999999887555444443 78889
Q ss_pred EEEEeeCC
Q 032702 109 IFVEYAKP 116 (135)
Q Consensus 109 l~v~~a~~ 116 (135)
|.|++++.
T Consensus 96 ~yiq~sn~ 103 (492)
T KOG1190|consen 96 IYIQYSNH 103 (492)
T ss_pred eeehhhhH
Confidence 99998763
No 103
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.94 E-value=0.00013 Score=53.76 Aligned_cols=80 Identities=25% Similarity=0.397 Sum_probs=64.3
Q ss_pred CCCCeEEEc--CCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeC-C-eEEE
Q 032702 35 EPSTNLFVS--GLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLD-G-WVIF 110 (135)
Q Consensus 35 ~~~~~v~v~--nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~-g-~~l~ 110 (135)
.+...|.+. |--..+|-+.|..++...|.+..+.+.+. +|. .|.|+|++.+.|++|.+.|||..|. | ..|+
T Consensus 118 ~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ngV---QAmVEFdsv~~AqrAk~alNGADIYsGCCTLK 192 (494)
T KOG1456|consen 118 TPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NGV---QAMVEFDSVEVAQRAKAALNGADIYSGCCTLK 192 (494)
T ss_pred CCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--cce---eeEEeechhHHHHHHHhhcccccccccceeEE
Confidence 444455544 55578899999999999999999887654 454 7999999999999999999999864 3 4799
Q ss_pred EEeeCCCCC
Q 032702 111 VEYAKPRQP 119 (135)
Q Consensus 111 v~~a~~~~~ 119 (135)
|++|+|.+-
T Consensus 193 IeyAkP~rl 201 (494)
T KOG1456|consen 193 IEYAKPTRL 201 (494)
T ss_pred EEecCccee
Confidence 999997654
No 104
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.93 E-value=9.5e-05 Score=56.28 Aligned_cols=70 Identities=19% Similarity=0.327 Sum_probs=52.0
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEe--ecCCC-CCccc---EEEEEeCCHHHHHHHHHhhCC
Q 032702 31 RPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIV--KHRES-GYSKG---FGFVKYATLEAAGKAIEGMDG 101 (135)
Q Consensus 31 ~~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~--~~~~~-~~~~g---~afv~f~~~~~a~~a~~~l~~ 101 (135)
.....-.+.||||+||++++|+.|...|..||.+. +.+. ..... ..++| |+|+.|+++.+....+.++..
T Consensus 253 ~~~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~ 328 (520)
T KOG0129|consen 253 YRSPRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE 328 (520)
T ss_pred CCccccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh
Confidence 34455678999999999999999999999999643 2332 11111 23466 999999999998888876654
No 105
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.91 E-value=4.2e-05 Score=55.63 Aligned_cols=78 Identities=26% Similarity=0.510 Sum_probs=60.8
Q ss_pred CeEEEcCCCCCCCHHH------HHHHhhccCCeEEEEEeecCCC-CCcccE--EEEEeCCHHHHHHHHHhhCCceeCCeE
Q 032702 38 TNLFVSGLSKRTTDET------LRDTFSAFGEVVHAKIVKHRES-GYSKGF--GFVKYATLEAAGKAIEGMDGKFLDGWV 108 (135)
Q Consensus 38 ~~v~v~nlp~~~~~~~------l~~~f~~~g~i~~~~~~~~~~~-~~~~g~--afv~f~~~~~a~~a~~~l~~~~~~g~~ 108 (135)
.-+||-+||+.+..++ -.++|.+||.|..+.+.+.... -...++ .||+|...++|.+++...+|..++|+-
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~ 194 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRV 194 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCce
Confidence 4688888987776665 2478999999999887554211 111233 499999999999999999999999999
Q ss_pred EEEEeeC
Q 032702 109 IFVEYAK 115 (135)
Q Consensus 109 l~v~~a~ 115 (135)
|++.|..
T Consensus 195 lkatYGT 201 (480)
T COG5175 195 LKATYGT 201 (480)
T ss_pred EeeecCc
Confidence 9998875
No 106
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=97.81 E-value=0.00019 Score=48.26 Aligned_cols=67 Identities=25% Similarity=0.427 Sum_probs=59.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeC
Q 032702 32 PQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLD 105 (135)
Q Consensus 32 ~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~ 105 (135)
+.......|.|.+||+..++++|+.+..+-|++....+.++ |++.|+|-..++++-|+..|....+.
T Consensus 110 psrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 110 PSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred cccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhcccccc
Confidence 44556679999999999999999999999999999998877 38999999999999999999887643
No 107
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.73 E-value=0.00019 Score=55.41 Aligned_cols=80 Identities=31% Similarity=0.465 Sum_probs=63.1
Q ss_pred CCCCeEEEcCCCCCCCH------HHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeC-Ce
Q 032702 35 EPSTNLFVSGLSKRTTD------ETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLD-GW 107 (135)
Q Consensus 35 ~~~~~v~v~nlp~~~~~------~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~-g~ 107 (135)
.-...|+|.|+|---.. ..|.++|+++|.+..+.++.+.. |..+|+.|++|.+..+|+.|++.|||..+. +.
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~-ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEE-GGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCcc-CCeeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 44568889999854332 24678889999999999988854 449999999999999999999999999874 55
Q ss_pred EEEEEeeC
Q 032702 108 VIFVEYAK 115 (135)
Q Consensus 108 ~l~v~~a~ 115 (135)
...|+.-+
T Consensus 135 tf~v~~f~ 142 (698)
T KOG2314|consen 135 TFFVRLFK 142 (698)
T ss_pred eEEeehhh
Confidence 66666544
No 108
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.69 E-value=0.00016 Score=55.05 Aligned_cols=66 Identities=32% Similarity=0.448 Sum_probs=59.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhh-ccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHh
Q 032702 33 QAEPSTNLFVSGLSKRTTDETLRDTFS-AFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98 (135)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~-~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~ 98 (135)
.-.+..|||||+||.-++-++|..+|+ .||.|..+.|-.|.+-+.++|-+=|+|.+-++..+||..
T Consensus 366 ~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 366 PIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred ccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 446678999999999999999999997 799999999999877788999999999999999999874
No 109
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.68 E-value=0.00017 Score=53.33 Aligned_cols=78 Identities=21% Similarity=0.256 Sum_probs=65.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccC-CeEE--EEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEe
Q 032702 37 STNLFVSGLSKRTTDETLRDTFSAFG-EVVH--AKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEY 113 (135)
Q Consensus 37 ~~~v~v~nlp~~~~~~~l~~~f~~~g-~i~~--~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 113 (135)
..-|.+.+||+.++.++|..||..|. .+.. +.++.+ ..|.+.|-|||+|.+.+++.+|....+.....++-|.|..
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N-~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp 358 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLN-GQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFP 358 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEc-CCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEee
Confidence 44677899999999999999999886 3444 666666 6788999999999999999999998888777788888877
Q ss_pred eC
Q 032702 114 AK 115 (135)
Q Consensus 114 a~ 115 (135)
+.
T Consensus 359 ~S 360 (508)
T KOG1365|consen 359 CS 360 (508)
T ss_pred cc
Confidence 65
No 110
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.67 E-value=0.00019 Score=38.69 Aligned_cols=52 Identities=29% Similarity=0.521 Sum_probs=40.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHH
Q 032702 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96 (135)
Q Consensus 38 ~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~ 96 (135)
..|-|.+.+.+..+. +.++|..||+|....+... ....|+.|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~~------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPES------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCCC------CcEEEEEECCHHHHHhhC
Confidence 356778888777755 4558889999999887632 239999999999999885
No 111
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.57 E-value=0.00046 Score=50.35 Aligned_cols=82 Identities=20% Similarity=0.347 Sum_probs=61.9
Q ss_pred CCCCCCeEEEcCCC----CCCC-------HHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCC
Q 032702 33 QAEPSTNLFVSGLS----KRTT-------DETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDG 101 (135)
Q Consensus 33 ~~~~~~~v~v~nlp----~~~~-------~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~ 101 (135)
.....++|.+.|+= ...+ .++|.+-+.+||.+..+.|.-. .+.|.+-|.|.+.+.|..++..|+|
T Consensus 261 k~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~----hPdGvvtV~f~n~eeA~~ciq~m~G 336 (382)
T KOG1548|consen 261 KARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDR----HPDGVVTVSFRNNEEADQCIQTMDG 336 (382)
T ss_pred cccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEecc----CCCceeEEEeCChHHHHHHHHHhcC
Confidence 34556778777652 1222 2356677889999999876422 2567999999999999999999999
Q ss_pred ceeCCeEEEEEeeCCCC
Q 032702 102 KFLDGWVIFVEYAKPRQ 118 (135)
Q Consensus 102 ~~~~g~~l~v~~a~~~~ 118 (135)
.++.|+.|..+...-+.
T Consensus 337 R~fdgRql~A~i~DG~t 353 (382)
T KOG1548|consen 337 RWFDGRQLTASIWDGKT 353 (382)
T ss_pred eeecceEEEEEEeCCcc
Confidence 99999999998875443
No 112
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=97.49 E-value=0.00061 Score=52.40 Aligned_cols=64 Identities=22% Similarity=0.356 Sum_probs=51.9
Q ss_pred HHHHhhccCCeEEEEEeecCC---CCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEeeCCC
Q 032702 54 LRDTFSAFGEVVHAKIVKHRE---SGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKPR 117 (135)
Q Consensus 54 l~~~f~~~g~i~~~~~~~~~~---~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~ 117 (135)
++.-|..||.|..|.+..+.. -....|-.||+|.+.+++++|.++|+|..+.|+.+...|....
T Consensus 426 vr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYydeD 492 (500)
T KOG0120|consen 426 VRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDED 492 (500)
T ss_pred HHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCHH
Confidence 333445799999998877622 2346789999999999999999999999999999998887543
No 113
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.25 E-value=0.00016 Score=50.67 Aligned_cols=55 Identities=22% Similarity=0.403 Sum_probs=45.7
Q ss_pred ccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEeeC
Q 032702 60 AFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAK 115 (135)
Q Consensus 60 ~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 115 (135)
+||+|+++.|-.. ....-.|-+||.|...++|++|+..||+.++.|++|++.+..
T Consensus 92 kygEiee~~Vc~N-l~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 92 KYGEIEELNVCDN-LGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred Hhhhhhhhhhhcc-cchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 8999988855332 122346889999999999999999999999999999999875
No 114
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.23 E-value=0.0022 Score=41.59 Aligned_cols=57 Identities=25% Similarity=0.412 Sum_probs=44.0
Q ss_pred HHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEeeCCCC
Q 032702 53 TLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKPRQ 118 (135)
Q Consensus 53 ~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~~ 118 (135)
+|...|..||++.=++++-+ .-+|+|.+.++|.+|+. ++|..++|+.|+|+...+.=
T Consensus 52 ~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtpdW 108 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTPDW 108 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE-----
T ss_pred HHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCccH
Confidence 56677788998776676544 67999999999999998 99999999999999887543
No 115
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.22 E-value=0.00039 Score=53.98 Aligned_cols=77 Identities=19% Similarity=0.298 Sum_probs=62.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhh-ccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCcee---CCeE
Q 032702 33 QAEPSTNLFVSGLSKRTTDETLRDTFS-AFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFL---DGWV 108 (135)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~-~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~---~g~~ 108 (135)
....+..|+|.||-.-+|..+|++++. ..|.|.+..| | +-+.+|||.|.+.++|.....+|||..| +.+.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--D----kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--D----KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHH--H----HhhcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 556778999999999999999999997 5556666522 2 1345999999999999999999999975 4566
Q ss_pred EEEEeeC
Q 032702 109 IFVEYAK 115 (135)
Q Consensus 109 l~v~~a~ 115 (135)
|-+.|..
T Consensus 514 L~adf~~ 520 (718)
T KOG2416|consen 514 LIADFVR 520 (718)
T ss_pred eEeeecc
Confidence 7777765
No 116
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.17 E-value=0.0037 Score=38.18 Aligned_cols=77 Identities=18% Similarity=0.261 Sum_probs=48.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecC-------CCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeE
Q 032702 36 PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHR-------ESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWV 108 (135)
Q Consensus 36 ~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~-------~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~ 108 (135)
...-|.|-+.|+.. ...+...|.+||.|.+..-.... ........-.|.|.+..+|.+|+. .||..+.|.-
T Consensus 5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPSA-SNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GGG-HHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCE
T ss_pred CCeEEEEEccCHHH-HHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcE
Confidence 34457777899884 45677899999998776400000 001123489999999999999998 7999888754
Q ss_pred -EEEEee
Q 032702 109 -IFVEYA 114 (135)
Q Consensus 109 -l~v~~a 114 (135)
+-|.+.
T Consensus 83 mvGV~~~ 89 (100)
T PF05172_consen 83 MVGVKPC 89 (100)
T ss_dssp EEEEEE-
T ss_pred EEEEEEc
Confidence 445555
No 117
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.11 E-value=0.00022 Score=57.20 Aligned_cols=80 Identities=24% Similarity=0.238 Sum_probs=71.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEeeCC
Q 032702 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKP 116 (135)
Q Consensus 37 ~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~ 116 (135)
...++|.|.|+..|.++|+.++..+|.+.++.++.. ..|+++|.+++.|.+..++..+.......-+..+.+.|..++|
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~-r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTV-RAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhh-hccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 468999999999999999999999999999998887 5799999999999999999999888877777777788888766
Q ss_pred C
Q 032702 117 R 117 (135)
Q Consensus 117 ~ 117 (135)
.
T Consensus 815 ~ 815 (881)
T KOG0128|consen 815 E 815 (881)
T ss_pred c
Confidence 3
No 118
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.09 E-value=0.0013 Score=49.27 Aligned_cols=71 Identities=28% Similarity=0.401 Sum_probs=57.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeec---CCC--C-C-------cccEEEEEeCCHHHHHHHHHh
Q 032702 32 PQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKH---RES--G-Y-------SKGFGFVKYATLEAAGKAIEG 98 (135)
Q Consensus 32 ~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~--~-~-------~~g~afv~f~~~~~a~~a~~~ 98 (135)
.++-+.++|.+.|||.+..-+-|.++|..+|.|+.+++-.. ..+ + . .+-+|+|+|...+.|.+|.+.
T Consensus 226 ~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~ 305 (484)
T KOG1855|consen 226 EEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAREL 305 (484)
T ss_pred ccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHh
Confidence 34467889999999999999999999999999999987554 111 1 1 256899999999999999998
Q ss_pred hCCc
Q 032702 99 MDGK 102 (135)
Q Consensus 99 l~~~ 102 (135)
++..
T Consensus 306 ~~~e 309 (484)
T KOG1855|consen 306 LNPE 309 (484)
T ss_pred hchh
Confidence 7554
No 119
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.06 E-value=0.0059 Score=45.45 Aligned_cols=62 Identities=23% Similarity=0.225 Sum_probs=49.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhc----cCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHh
Q 032702 36 PSTNLFVSGLSKRTTDETLRDTFSA----FGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98 (135)
Q Consensus 36 ~~~~v~v~nlp~~~~~~~l~~~f~~----~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~ 98 (135)
....|...+||+++++.++.+||.. -|....+-+++. .+|+..|-|||.|..+++|+.|+..
T Consensus 160 ~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r-pdgrpTGdAFvlfa~ee~aq~aL~k 225 (508)
T KOG1365|consen 160 NQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR-PDGRPTGDAFVLFACEEDAQFALRK 225 (508)
T ss_pred cceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC-CCCCcccceEEEecCHHHHHHHHHH
Confidence 3446667899999999999999962 234455555554 4788999999999999999999874
No 120
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.05 E-value=0.0015 Score=48.48 Aligned_cols=80 Identities=11% Similarity=0.180 Sum_probs=63.8
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCC---CCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEeeC
Q 032702 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRES---GYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAK 115 (135)
Q Consensus 39 ~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~---~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 115 (135)
.|-|.||.+.++.++++.+|...|.|.++.|+..... ......|||.|.|.+.+..|-. |.+..+-++.|.|..+-
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~~ 87 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPYG 87 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEecC
Confidence 8889999999999999999999999999988774322 2234689999999988877765 77777778887777765
Q ss_pred CCCC
Q 032702 116 PRQP 119 (135)
Q Consensus 116 ~~~~ 119 (135)
....
T Consensus 88 ~~~~ 91 (479)
T KOG4676|consen 88 DEVI 91 (479)
T ss_pred CCCC
Confidence 4443
No 121
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.04 E-value=0.0023 Score=52.02 Aligned_cols=80 Identities=25% Similarity=0.403 Sum_probs=68.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC--eEEE
Q 032702 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDG--WVIF 110 (135)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g--~~l~ 110 (135)
.......+++++|..++....|...|..||.|..+.+.... .|+|++|.+...++.|++.+-+..+++ +.|.
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq------~yayi~yes~~~aq~a~~~~rgap~G~P~~r~r 524 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQ------PYAYIQYESPPAAQAATHDMRGAPLGGPPRRLR 524 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCC------cceeeecccCccchhhHHHHhcCcCCCCCcccc
Confidence 55677899999999999999999999999999998774432 399999999999999999999999865 5688
Q ss_pred EEeeCCCC
Q 032702 111 VEYAKPRQ 118 (135)
Q Consensus 111 v~~a~~~~ 118 (135)
|.++.+..
T Consensus 525 vdla~~~~ 532 (975)
T KOG0112|consen 525 VDLASPPG 532 (975)
T ss_pred cccccCCC
Confidence 88886544
No 122
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.98 E-value=0.0045 Score=44.51 Aligned_cols=65 Identities=18% Similarity=0.326 Sum_probs=52.4
Q ss_pred HHHHHHhhccCCeEEEEEeecCCCCCcc-cEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEeeCC
Q 032702 52 ETLRDTFSAFGEVVHAKIVKHRESGYSK-GFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKP 116 (135)
Q Consensus 52 ~~l~~~f~~~g~i~~~~~~~~~~~~~~~-g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~ 116 (135)
+++++-+++||.|..|.+.......... ---||+|...++|.+|+-.|||.+++|+.++..+.+-
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~ 366 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNL 366 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccH
Confidence 4577888999999888776654443332 3589999999999999999999999999998877653
No 123
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.97 E-value=0.0079 Score=35.33 Aligned_cols=60 Identities=15% Similarity=0.268 Sum_probs=43.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCC
Q 032702 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDG 101 (135)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~ 101 (135)
.+...+..+|+ +|..+...+|..+|..||.|.- .+..+. -|||...+.+.+..++..+..
T Consensus 5 ~P~RdHVFhlt-FPkeWK~~DI~qlFspfG~I~V-sWi~dT-------SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 5 QPSRDHVFHLT-FPKEWKTSDIYQLFSPFGQIYV-SWINDT-------SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp --SGCCEEEEE---TT--HHHHHHHCCCCCCEEE-EEECTT-------EEEEEECCCHHHHHHHHHHTT
T ss_pred CCCcceEEEEe-CchHhhhhhHHHHhccCCcEEE-EEEcCC-------cEEEEeecHHHHHHHHHHhcc
Confidence 34556778887 9999999999999999997644 444442 899999999999999887763
No 124
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=96.72 E-value=0.0042 Score=47.97 Aligned_cols=55 Identities=16% Similarity=0.247 Sum_probs=44.6
Q ss_pred cCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCcee---CC-eEEEEEeeC
Q 032702 61 FGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFL---DG-WVIFVEYAK 115 (135)
Q Consensus 61 ~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~---~g-~~l~v~~a~ 115 (135)
.|.-.+++++.|-.+..+.|||||.|.+.+++..+.++++|..+ .+ +...+.||+
T Consensus 413 ~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~itYAr 471 (549)
T KOG4660|consen 413 KGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASITYAR 471 (549)
T ss_pred cCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeeehhh
Confidence 56667788888888889999999999999999999999999974 33 345555554
No 125
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.64 E-value=0.0041 Score=41.87 Aligned_cols=84 Identities=14% Similarity=0.197 Sum_probs=51.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhc-cCCe---EEEEEeecC-CCCC-cccEEEEEeCCHHHHHHHHHhhCCceeC---
Q 032702 35 EPSTNLFVSGLSKRTTDETLRDTFSA-FGEV---VHAKIVKHR-ESGY-SKGFGFVKYATLEAAGKAIEGMDGKFLD--- 105 (135)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~-~g~i---~~~~~~~~~-~~~~-~~g~afv~f~~~~~a~~a~~~l~~~~~~--- 105 (135)
.....|.|.+||+..+++++.+.+.. ++.- ..+...... .... ..+.|||.|.+.+++......++|..+.
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 45568999999999999999987776 6654 233211221 2222 3568999999999999999999997642
Q ss_pred C--eEEEEEeeCCCC
Q 032702 106 G--WVIFVEYAKPRQ 118 (135)
Q Consensus 106 g--~~l~v~~a~~~~ 118 (135)
| ....|++|.-..
T Consensus 85 g~~~~~~VE~Apyqk 99 (176)
T PF03467_consen 85 GNEYPAVVEFAPYQK 99 (176)
T ss_dssp S-EEEEEEEE-SS--
T ss_pred CCCcceeEEEcchhc
Confidence 1 346777775433
No 126
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.42 E-value=0.0003 Score=56.47 Aligned_cols=82 Identities=29% Similarity=0.423 Sum_probs=64.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEeeC
Q 032702 36 PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAK 115 (135)
Q Consensus 36 ~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 115 (135)
+.+++|+.||+..+.+.+|...|..+|.+..+.+.....+++.+|+||++|...+++.+++.......++ ++.|....
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g--K~~v~i~g 743 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG--KISVAISG 743 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh--hhhhheeC
Confidence 3468999999999999999999999998888877656678889999999999999999999865544443 34444444
Q ss_pred CCCC
Q 032702 116 PRQP 119 (135)
Q Consensus 116 ~~~~ 119 (135)
+...
T Consensus 744 ~pf~ 747 (881)
T KOG0128|consen 744 PPFQ 747 (881)
T ss_pred CCCC
Confidence 4333
No 127
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.40 E-value=0.035 Score=30.82 Aligned_cols=54 Identities=13% Similarity=0.289 Sum_probs=42.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcc---CCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhh
Q 032702 38 TNLFVSGLSKRTTDETLRDTFSAF---GEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99 (135)
Q Consensus 38 ~~v~v~nlp~~~~~~~l~~~f~~~---g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l 99 (135)
..|+|.++.. .+.++++.+|..| .....+.++-|. -|-|.|.+.+.|.+|+.+|
T Consensus 6 eavhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 4789988865 5667789999887 235677777773 6889999999999999764
No 128
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.32 E-value=0.0078 Score=47.97 Aligned_cols=81 Identities=15% Similarity=0.087 Sum_probs=64.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEE-EEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEE
Q 032702 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVH-AKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVE 112 (135)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~-~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 112 (135)
...+..|||..||..+++.++.++|...-.|++ +.+... -+++.++.|||.|..+..+..|...-+...++.+.|+|.
T Consensus 431 ~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~-P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~ 509 (944)
T KOG4307|consen 431 GGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRL-PTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVD 509 (944)
T ss_pred CCccceEEeccCCccccccchhhhhhhhhhhhheeEeccC-CcccccchhhheeccccccchhhhcccccccCceEEEee
Confidence 345679999999999999999999987666655 555555 567888999999999888888777666666788889987
Q ss_pred eeC
Q 032702 113 YAK 115 (135)
Q Consensus 113 ~a~ 115 (135)
...
T Consensus 510 si~ 512 (944)
T KOG4307|consen 510 SIA 512 (944)
T ss_pred chh
Confidence 654
No 129
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.27 E-value=0.0046 Score=46.56 Aligned_cols=76 Identities=30% Similarity=0.420 Sum_probs=60.0
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccC-CeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCce-eCCeEEEEEeeCC
Q 032702 39 NLFVSGLSKRTTDETLRDTFSAFG-EVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKF-LDGWVIFVEYAKP 116 (135)
Q Consensus 39 ~v~v~nlp~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-~~g~~l~v~~a~~ 116 (135)
.+|++||.+.++.++|..+|..-. ....-.++. .||+||.+.+..-+.++++.+++.. +.|..+.+..+.+
T Consensus 3 klyignL~p~~~psdl~svfg~ak~~~~g~fl~k-------~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK-------SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred cccccccCCCCChHHHHHHhccccCCCCcceeee-------cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 689999999999999999996431 111112222 2499999999999999999999985 8999999999988
Q ss_pred CCCCC
Q 032702 117 RQPPT 121 (135)
Q Consensus 117 ~~~~~ 121 (135)
++.+.
T Consensus 76 kkqrs 80 (584)
T KOG2193|consen 76 KKQRS 80 (584)
T ss_pred HHHHh
Confidence 77643
No 130
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.17 E-value=0.15 Score=31.70 Aligned_cols=66 Identities=18% Similarity=0.236 Sum_probs=46.8
Q ss_pred CeEEE-cCCCCCCCHHHHHHHhhccC-CeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeC
Q 032702 38 TNLFV-SGLSKRTTDETLRDTFSAFG-EVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLD 105 (135)
Q Consensus 38 ~~v~v-~nlp~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~ 105 (135)
..+.| ...|..++.++|..+...+- .|..+++.++. ..++-.+++.|.+..+|......+||..+.
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 34444 44555555556665555543 67788888762 235667999999999999999999999764
No 131
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.11 E-value=0.0023 Score=51.95 Aligned_cols=83 Identities=17% Similarity=0.280 Sum_probs=69.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEE
Q 032702 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVE 112 (135)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 112 (135)
....+.+||+|||+..+++.+|+-.|..+|.+.+|.+.... -+...-++|+.|.+.+.+-.++..+.+..|....+++.
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~g 446 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIG 446 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCccccc
Confidence 34556799999999999999999999999999999886552 23344599999999999999999999999877777777
Q ss_pred eeCC
Q 032702 113 YAKP 116 (135)
Q Consensus 113 ~a~~ 116 (135)
+..+
T Consensus 447 lG~~ 450 (975)
T KOG0112|consen 447 LGQP 450 (975)
T ss_pred cccc
Confidence 6644
No 132
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.08 E-value=0.0098 Score=41.95 Aligned_cols=64 Identities=23% Similarity=0.356 Sum_probs=55.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCc
Q 032702 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGK 102 (135)
Q Consensus 38 ~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~ 102 (135)
..|||.||...+.-+.|...|..||.+..-.+..| ..+++.+-++|.|.+.-.+..|+..+...
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD-~r~k~t~eg~v~~~~k~~a~~a~rr~~~~ 95 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVD-DRGKPTREGIVEFAKKPNARKAARRCREG 95 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeec-ccccccccchhhhhcchhHHHHHHHhccC
Confidence 68999999999999999999999999977666666 56888889999999999999999877433
No 133
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.88 E-value=0.089 Score=34.18 Aligned_cols=74 Identities=16% Similarity=0.289 Sum_probs=52.5
Q ss_pred CCCCCCeEEEcCCCCCC----CHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeE
Q 032702 33 QAEPSTNLFVSGLSKRT----TDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWV 108 (135)
Q Consensus 33 ~~~~~~~v~v~nlp~~~----~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~ 108 (135)
.+.+-.+|.|.=|..++ +...+...+..||.|..+.+. ++.-|.|.|.+..+|=.|+.+++. ...|..
T Consensus 82 kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-------GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm 153 (166)
T PF15023_consen 82 KEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-------GRQSAVVVFKDITSACKAVSAFQS-RAPGTM 153 (166)
T ss_pred CCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-------CCceEEEEehhhHHHHHHHHhhcC-CCCCce
Confidence 45566688886444433 333455556789999998652 345899999999999999998886 556777
Q ss_pred EEEEee
Q 032702 109 IFVEYA 114 (135)
Q Consensus 109 l~v~~a 114 (135)
+++.|-
T Consensus 154 ~qCsWq 159 (166)
T PF15023_consen 154 FQCSWQ 159 (166)
T ss_pred EEeecc
Confidence 777764
No 134
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.48 E-value=0.082 Score=35.88 Aligned_cols=61 Identities=21% Similarity=0.237 Sum_probs=44.4
Q ss_pred HHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhC--CceeCCeEEEEEeeCCC
Q 032702 51 DETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD--GKFLDGWVIFVEYAKPR 117 (135)
Q Consensus 51 ~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~--~~~~~g~~l~v~~a~~~ 117 (135)
...|+++|..++.+..+...+. .+-..|.|.+.++|..+...|+ +..+.|..++|.++.+.
T Consensus 9 ~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 9 LAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred HHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 4678999999998877765443 3478999999999999999999 88999999999998433
No 135
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=95.38 E-value=0.16 Score=29.04 Aligned_cols=67 Identities=27% Similarity=0.424 Sum_probs=39.4
Q ss_pred eEEEc-CCCCCCCHHHHHHHhhccC-----CeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEE
Q 032702 39 NLFVS-GLSKRTTDETLRDTFSAFG-----EVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVE 112 (135)
Q Consensus 39 ~v~v~-nlp~~~~~~~l~~~f~~~g-----~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 112 (135)
++||. +=-..++..+|..++..-+ .|-.+.+... |+||+-.. +.+..++..|++..+.|++++|+
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve 72 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPE-EVAEKVLEALNGKKIKGKKVRVE 72 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-T-T-HHHHHHHHTT--SSS----EE
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECH-HHHHHHHHHhcCCCCCCeeEEEE
Confidence 34552 3446677788888886543 5667777544 89998875 57889999999999999999998
Q ss_pred ee
Q 032702 113 YA 114 (135)
Q Consensus 113 ~a 114 (135)
.|
T Consensus 73 ~A 74 (74)
T PF03880_consen 73 RA 74 (74)
T ss_dssp E-
T ss_pred EC
Confidence 75
No 136
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=95.18 E-value=0.0092 Score=43.53 Aligned_cols=81 Identities=21% Similarity=0.329 Sum_probs=59.4
Q ss_pred CeEEEcCCCCCCCHHHHH---HHhhccCCeEEEEEeecCC--CC-CcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEE
Q 032702 38 TNLFVSGLSKRTTDETLR---DTFSAFGEVVHAKIVKHRE--SG-YSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFV 111 (135)
Q Consensus 38 ~~v~v~nlp~~~~~~~l~---~~f~~~g~i~~~~~~~~~~--~~-~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 111 (135)
.-+||-+|+.....+.+. +.|.+||.|..+.+..+.. .+ -...-+||+|...+++..+|...+|....|+.|++
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 467777888666555433 5677888898887766541 11 12335999999999999999999999998888777
Q ss_pred EeeCCCC
Q 032702 112 EYAKPRQ 118 (135)
Q Consensus 112 ~~a~~~~ 118 (135)
.+..++.
T Consensus 158 ~~gttky 164 (327)
T KOG2068|consen 158 SLGTTKY 164 (327)
T ss_pred hhCCCcc
Confidence 7765443
No 137
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=95.10 E-value=0.021 Score=43.59 Aligned_cols=76 Identities=21% Similarity=0.268 Sum_probs=59.2
Q ss_pred CCeEEEcCCCCC-CCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEeeC
Q 032702 37 STNLFVSGLSKR-TTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAK 115 (135)
Q Consensus 37 ~~~v~v~nlp~~-~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 115 (135)
.+.+-+.-.|.. -+..+|...|.+||.|..|.+-.. -..|.|+|....+|..|.. .++..|.++.|+|.|-+
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whn 444 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHN 444 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhc-cccceecCceeEEEEec
Confidence 345555555543 355789999999999999876433 2389999999999877776 78899999999999999
Q ss_pred CCCC
Q 032702 116 PRQP 119 (135)
Q Consensus 116 ~~~~ 119 (135)
+...
T Consensus 445 ps~~ 448 (526)
T KOG2135|consen 445 PSPV 448 (526)
T ss_pred CCcc
Confidence 8553
No 138
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=94.33 E-value=0.065 Score=43.81 Aligned_cols=77 Identities=22% Similarity=0.284 Sum_probs=61.9
Q ss_pred EEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCce--eCCeEEEEEeeCCCC
Q 032702 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKF--LDGWVIFVEYAKPRQ 118 (135)
Q Consensus 41 ~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~--~~g~~l~v~~a~~~~ 118 (135)
++.|.+-..+-..|.-+|..||.+......++-+ ++.|.|...+.|..|+++|+|.. .-|-+.+|.+|+..+
T Consensus 302 ~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~ 375 (1007)
T KOG4574|consen 302 SLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLP 375 (1007)
T ss_pred hhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccccc
Confidence 3344555666678999999999999988766643 89999999999999999999997 457789999998877
Q ss_pred CCCCC
Q 032702 119 PPTLP 123 (135)
Q Consensus 119 ~~~~~ 123 (135)
....+
T Consensus 376 ~~ep~ 380 (1007)
T KOG4574|consen 376 MYEPP 380 (1007)
T ss_pred cccCC
Confidence 64443
No 139
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.02 E-value=0.3 Score=37.37 Aligned_cols=68 Identities=21% Similarity=0.309 Sum_probs=56.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccC-CeEEEEEeecCCCCCc-ccEEEEEeCCHHHHHHHHHhhCCceeC
Q 032702 35 EPSTNLFVSGLSKRTTDETLRDTFSAFG-EVVHAKIVKHRESGYS-KGFGFVKYATLEAAGKAIEGMDGKFLD 105 (135)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~~~~-~g~afv~f~~~~~a~~a~~~l~~~~~~ 105 (135)
.++..|.|-.+|-.++-.+|..|+..+- .|..++++++ |.+ +=..++.|.+-.+|......+||..+.
T Consensus 72 ~~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd---~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 72 SSSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRD---GMPNRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CCCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeec---CCCceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 3377889999999999999999998764 6888888885 333 335999999999999999999999764
No 140
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=93.82 E-value=0.12 Score=41.18 Aligned_cols=72 Identities=18% Similarity=0.190 Sum_probs=60.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEE
Q 032702 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVE 112 (135)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 112 (135)
+..+..++||+|+-..+....++.++...|.|..+... .|+|..|..+.....++..|+...++|.++.+.
T Consensus 36 ~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~---------~fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~ 106 (668)
T KOG2253|consen 36 PLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRD---------KFGFCEFLKHIGDLRASRLLTELNIDDQKLIEN 106 (668)
T ss_pred CCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhh---------hhcccchhhHHHHHHHHHHhcccCCCcchhhcc
Confidence 34556799999999999999999999999977665432 189999999999999999999888989887776
Q ss_pred e
Q 032702 113 Y 113 (135)
Q Consensus 113 ~ 113 (135)
.
T Consensus 107 ~ 107 (668)
T KOG2253|consen 107 V 107 (668)
T ss_pred c
Confidence 6
No 141
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.74 E-value=0.36 Score=36.52 Aligned_cols=59 Identities=14% Similarity=0.229 Sum_probs=48.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCC-eEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHh
Q 032702 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGE-VVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98 (135)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~-i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~ 98 (135)
...-.|.|-|.++|.....++|.++|..|++ --.+.++-+. ++|..|.+...|..++..
T Consensus 387 e~dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 387 ESDLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred cccccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 4456789999999999999999999999974 3556666663 999999999999999984
No 142
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=93.72 E-value=0.67 Score=26.03 Aligned_cols=56 Identities=9% Similarity=0.188 Sum_probs=43.1
Q ss_pred CCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEE
Q 032702 47 KRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFV 111 (135)
Q Consensus 47 ~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 111 (135)
..++-.+++..|..|+ ...+. .+ .+ .-||.|.+..+|+++....++..+.+..|.+
T Consensus 10 ~~~~v~d~K~~Lr~y~-~~~I~--~d-~t-----GfYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYR-WDRIR--DD-RT-----GFYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CCccHHHHHHHHhcCC-cceEE--ec-CC-----EEEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 4567789999999996 44443 33 23 4599999999999999999998887776654
No 143
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=93.72 E-value=0.15 Score=40.00 Aligned_cols=73 Identities=11% Similarity=0.206 Sum_probs=55.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhc--cCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCce--eCCeEEE
Q 032702 35 EPSTNLFVSGLSKRTTDETLRDTFSA--FGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKF--LDGWVIF 110 (135)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~--~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~--~~g~~l~ 110 (135)
...|.|.+.-||..+-.++++.+|.. +..+..|.+-.. + -=||+|++..||+.|.+.|.... +.|+.|.
T Consensus 173 ~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N--~-----nWyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 173 HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN--D-----NWYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec--C-----ceEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 34567888999999999999999964 567777776543 1 44999999999999998876553 6777665
Q ss_pred EEee
Q 032702 111 VEYA 114 (135)
Q Consensus 111 v~~a 114 (135)
.++.
T Consensus 246 ARIK 249 (684)
T KOG2591|consen 246 ARIK 249 (684)
T ss_pred hhhh
Confidence 5543
No 144
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=92.04 E-value=1.6 Score=31.79 Aligned_cols=55 Identities=13% Similarity=0.117 Sum_probs=38.1
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCC-eEEEEEeecCCCCCcccEEEEEeCCH
Q 032702 29 PQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGE-VVHAKIVKHRESGYSKGFGFVKYATL 89 (135)
Q Consensus 29 ~~~~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~-i~~~~~~~~~~~~~~~g~afv~f~~~ 89 (135)
++........-|+++||+.++.-.+|+..+.+.+- ...+.+. -+.+-||+-|.+.
T Consensus 322 ~~g~~a~~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk------g~~~k~flh~~~~ 377 (396)
T KOG4410|consen 322 QSGVEAGAKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK------GHFGKCFLHFGNR 377 (396)
T ss_pred CCcccCccccceeeccCccccchHHHHHHHHhcCCCceeEeee------cCCcceeEecCCc
Confidence 33344444557999999999999999999987763 2333332 1456889999653
No 145
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=89.10 E-value=0.63 Score=33.82 Aligned_cols=81 Identities=26% Similarity=0.151 Sum_probs=61.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEee
Q 032702 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYA 114 (135)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 114 (135)
....++|++++-+.+.+.+...++..+|......+.....+...++++++.|...+.+..++.........+..+.....
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 35679999999999999988888888886665555444467788999999999999999999854444555555444444
Q ss_pred C
Q 032702 115 K 115 (135)
Q Consensus 115 ~ 115 (135)
.
T Consensus 166 ~ 166 (285)
T KOG4210|consen 166 T 166 (285)
T ss_pred c
Confidence 3
No 146
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=87.15 E-value=7.5 Score=28.59 Aligned_cols=69 Identities=29% Similarity=0.387 Sum_probs=47.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeE-EEEEe
Q 032702 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWV-IFVEY 113 (135)
Q Consensus 37 ~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~-l~v~~ 113 (135)
+.=|-|-++|+.-. ..+...|.++|.|.+.... .+| -+-+|.|.+..+|.+|+. .+|.-|.|.. |-|..
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~---~ng---NwMhirYssr~~A~KALs-kng~ii~g~vmiGVkp 266 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP---SNG---NWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKP 266 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecC---CCC---ceEEEEecchhHHHHhhh-hcCeeeccceEEeeee
Confidence 34444557777655 4466789999988765432 222 388999999999999997 6777776543 44443
No 147
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=84.36 E-value=3.7 Score=23.14 Aligned_cols=64 Identities=20% Similarity=0.190 Sum_probs=43.3
Q ss_pred HHHHHHhhccC-CeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEeeCCCC
Q 032702 52 ETLRDTFSAFG-EVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKPRQ 118 (135)
Q Consensus 52 ~~l~~~f~~~g-~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~~ 118 (135)
+++.+-|...| .+..+.-+..+.+..+...-||+.....+ ..+.++=..+++..+.|+....+.
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~---~k~i~~Ik~l~~~~V~vE~~~k~~ 66 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPN---NKEIYKIKTLCGQRVKVERPRKRR 66 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcc---ccceeehHhhCCeEEEEecCCCCC
Confidence 35666676666 77888777776667777788888875433 223344456888889998876554
No 148
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.92 E-value=16 Score=29.40 Aligned_cols=81 Identities=20% Similarity=0.273 Sum_probs=58.0
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHhhcc----CCeEEEEEeecC----------CCCC---------------------
Q 032702 34 AEPSTNLFVSGLSKR-TTDETLRDTFSAF----GEVVHAKIVKHR----------ESGY--------------------- 77 (135)
Q Consensus 34 ~~~~~~v~v~nlp~~-~~~~~l~~~f~~~----g~i~~~~~~~~~----------~~~~--------------------- 77 (135)
...+.+|-|-|+.|+ +...+|..+|..| |.|..|.|.+.. -+|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 456789999999975 5556888888765 578888776531 1122
Q ss_pred ----------------cccEEEEEeCCHHHHHHHHHhhCCceeCC--eEEEEEee
Q 032702 78 ----------------SKGFGFVKYATLEAAGKAIEGMDGKFLDG--WVIFVEYA 114 (135)
Q Consensus 78 ----------------~~g~afv~f~~~~~a~~a~~~l~~~~~~g--~~l~v~~a 114 (135)
..=||.|+|.+...|......|.|..+.. ..|-+++-
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 01279999999999999999999998754 44544443
No 149
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=76.79 E-value=9.4 Score=27.93 Aligned_cols=85 Identities=8% Similarity=0.125 Sum_probs=59.1
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecC-------CCCCcccEEEEEeCCHHHHHHHH----Hhh
Q 032702 31 RPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHR-------ESGYSKGFGFVKYATLEAAGKAI----EGM 99 (135)
Q Consensus 31 ~~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~-------~~~~~~g~afv~f~~~~~a~~a~----~~l 99 (135)
+.+.-.++.+.+.|+..+++-..+..-|-.||.|+.+++..+. .......-..+-|-+...|.... ..|
T Consensus 9 GdD~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrL 88 (309)
T PF10567_consen 9 GDDEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRL 88 (309)
T ss_pred CCccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHH
Confidence 4455667788899999999988888888899999999998874 12233456777888777765543 222
Q ss_pred CCc--eeCCeEEEEEeeC
Q 032702 100 DGK--FLDGWVIFVEYAK 115 (135)
Q Consensus 100 ~~~--~~~g~~l~v~~a~ 115 (135)
... .+....|.+.+..
T Consensus 89 sEfK~~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 89 SEFKTKLKSESLTLSFVS 106 (309)
T ss_pred HHHHHhcCCcceeEEEEE
Confidence 222 2566667766654
No 150
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=76.65 E-value=0.055 Score=41.02 Aligned_cols=81 Identities=17% Similarity=0.248 Sum_probs=65.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEE-eecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEe
Q 032702 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKI-VKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEY 113 (135)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~-~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 113 (135)
.....+-|.|+|+...++.|..++..||.+..|.. +.+. ..-..-|+|...+.+..++..|++..+.+..+++.|
T Consensus 78 qrsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~----etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~Y 153 (584)
T KOG2193|consen 78 QRSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDS----ETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGY 153 (584)
T ss_pred HHhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccch----HHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhccc
Confidence 34567889999999999999999999999988754 3332 233566788899999999999999999999999888
Q ss_pred eCCCCC
Q 032702 114 AKPRQP 119 (135)
Q Consensus 114 a~~~~~ 119 (135)
-.....
T Consensus 154 iPdeq~ 159 (584)
T KOG2193|consen 154 IPDEQN 159 (584)
T ss_pred Cchhhh
Confidence 754443
No 151
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=76.03 E-value=0.34 Score=38.05 Aligned_cols=75 Identities=8% Similarity=0.053 Sum_probs=56.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEE
Q 032702 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVI 109 (135)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l 109 (135)
...+.+|+.|+++.++-.+|...|..+..+..+.+..+.........++|.|.--....-|+.+||+..+....+
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~~ 303 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNFL 303 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccccc
Confidence 335789999999999999999999988777776664442223345688999987777788888888877655443
No 152
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=74.42 E-value=8.7 Score=21.76 Aligned_cols=65 Identities=15% Similarity=0.198 Sum_probs=41.8
Q ss_pred HHHHHHhhccC-CeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEeeCCCCC
Q 032702 52 ETLRDTFSAFG-EVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKPRQP 119 (135)
Q Consensus 52 ~~l~~~f~~~g-~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~~~ 119 (135)
+++.+.|...| .+.++.-+..+.+..+.-.-+|+....-+... .|+-..++++.+.|+....+..
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k~~~ 67 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHKRKN 67 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCcccCC
Confidence 35677777777 77888777776655555677777764332222 3444557888888887755443
No 153
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=67.22 E-value=0.47 Score=35.80 Aligned_cols=63 Identities=16% Similarity=0.084 Sum_probs=47.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeC
Q 032702 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLD 105 (135)
Q Consensus 38 ~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~ 105 (135)
.+++|++|+..+...++.++|..+|++....+- .+....+|.+.|..-.+...|+. .+|..+.
T Consensus 152 Rt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~a----sk~~s~~c~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 152 RTREVQSLISAAILPESGESFERKGEVSYAHTA----SKSRSSSCSHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred hhhhhhcchhhhcchhhhhhhhhcchhhhhhhh----ccCCCcchhhhHhhhhhHHHHHH-hcchhhh
Confidence 579999999999999999999999988665542 33344577788887777777776 4555543
No 154
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=67.02 E-value=15 Score=20.29 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=17.6
Q ss_pred HHHHHHhhccCCeEEEEEeec
Q 032702 52 ETLRDTFSAFGEVVHAKIVKH 72 (135)
Q Consensus 52 ~~l~~~f~~~g~i~~~~~~~~ 72 (135)
.+|+.+|+..|.|.-+.+..-
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~~ 29 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNPY 29 (62)
T ss_pred HHHHHHHHhcCcEEEEEEccc
Confidence 578999999999998887554
No 155
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=55.90 E-value=19 Score=26.28 Aligned_cols=66 Identities=23% Similarity=0.504 Sum_probs=41.1
Q ss_pred CeEEEcCCCCC------------CCHHHHHHHhhccCCeEEEEEeec-----CCCCCcccEEE--------------EEe
Q 032702 38 TNLFVSGLSKR------------TTDETLRDTFSAFGEVVHAKIVKH-----RESGYSKGFGF--------------VKY 86 (135)
Q Consensus 38 ~~v~v~nlp~~------------~~~~~l~~~f~~~g~i~~~~~~~~-----~~~~~~~g~af--------------v~f 86 (135)
.+|++.+||.. .++..|..+|+.||.|..+.++.- .-||+..|+.| |+|
T Consensus 150 dti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvqf 229 (445)
T KOG2891|consen 150 DTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQF 229 (445)
T ss_pred CceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHHH
Confidence 48888888842 345679999999999988876431 12444433333 333
Q ss_pred CCHHHHHHHHHhhCCce
Q 032702 87 ATLEAAGKAIEGMDGKF 103 (135)
Q Consensus 87 ~~~~~a~~a~~~l~~~~ 103 (135)
...-....|+.+|.|..
T Consensus 230 meykgfa~amdalr~~k 246 (445)
T KOG2891|consen 230 MEYKGFAQAMDALRGMK 246 (445)
T ss_pred HHHHhHHHHHHHHhcch
Confidence 33344456666666654
No 156
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=54.50 E-value=29 Score=23.66 Aligned_cols=41 Identities=34% Similarity=0.508 Sum_probs=33.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeec
Q 032702 32 PQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKH 72 (135)
Q Consensus 32 ~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~ 72 (135)
........+++.+++..++...+...|..+|.+....+...
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (306)
T COG0724 220 LLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPS 260 (306)
T ss_pred ccccccceeeccccccccchhHHHHhccccccceeeeccCC
Confidence 34456678999999999999999999999998866665544
No 157
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=53.05 E-value=50 Score=20.64 Aligned_cols=45 Identities=18% Similarity=0.335 Sum_probs=24.8
Q ss_pred CHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeC-CHHHHHHHHH
Q 032702 50 TDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYA-TLEAAGKAIE 97 (135)
Q Consensus 50 ~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~-~~~~a~~a~~ 97 (135)
+.+.|.+.|..|..++...+ .+. .-+.|+++|.|. +..-...|+.
T Consensus 30 ~~~~l~~~l~~f~p~kv~~l-~~~--~gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 30 SNEELLDKLAEFNPLKVKPL-YGK--QGHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp -SHHHHHHHHH---SEEEEE-EET--TEEEEEEEEE--SSHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCceeEEC-cCC--CCCcEEEEEEECCChHHHHHHHH
Confidence 45789999988986654333 332 246789999997 4444445544
No 158
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=52.04 E-value=16 Score=24.89 Aligned_cols=73 Identities=14% Similarity=0.200 Sum_probs=47.1
Q ss_pred eEEEcCCCCCCCHH-----HHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCe-EEEEE
Q 032702 39 NLFVSGLSKRTTDE-----TLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGW-VIFVE 112 (135)
Q Consensus 39 ~v~v~nlp~~~~~~-----~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~-~l~v~ 112 (135)
++.+.+++..+-.. ....+|.+|.+.....+.+ +.+..-|.|.+...+..|...++...+.|. .+++.
T Consensus 12 ~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~y 85 (193)
T KOG4019|consen 12 AIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLY 85 (193)
T ss_pred eeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhcccCCCceEEEE
Confidence 45556666443322 2344455554433333322 344778899999999999999999998877 78877
Q ss_pred eeCCC
Q 032702 113 YAKPR 117 (135)
Q Consensus 113 ~a~~~ 117 (135)
++.+-
T Consensus 86 faQ~~ 90 (193)
T KOG4019|consen 86 FAQPG 90 (193)
T ss_pred EccCC
Confidence 77543
No 159
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=50.96 E-value=11 Score=22.50 Aligned_cols=25 Identities=28% Similarity=0.497 Sum_probs=20.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhh
Q 032702 35 EPSTNLFVSGLSKRTTDETLRDTFS 59 (135)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~ 59 (135)
...++|-+.|||...++++|++.++
T Consensus 50 vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 50 VSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred ccCCEEEEeCCCCCCChhhheeeEE
Confidence 4456899999999999999885543
No 160
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=50.95 E-value=27 Score=26.54 Aligned_cols=65 Identities=17% Similarity=0.256 Sum_probs=46.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccC-CeEEEEEeecC---CCCCcccEEEEEeCCHHHHHHHHHhhCCce
Q 032702 38 TNLFVSGLSKRTTDETLRDTFSAFG-EVVHAKIVKHR---ESGYSKGFGFVKYATLEAAGKAIEGMDGKF 103 (135)
Q Consensus 38 ~~v~v~nlp~~~~~~~l~~~f~~~g-~i~~~~~~~~~---~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 103 (135)
..|.|.+||+..++.+|.+.+..|. .+....+.... .+. -.+.+||.|...++.......++|..
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~-~ysrayinFk~~~dv~ef~~~f~g~i 76 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNH-KYSRAYINFKNPEDVEEFRRRFDGYI 76 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhh-hhhhhhhccccHHHHHHHHhhCCceE
Confidence 4677899999999999999888764 22223333211 111 24689999999999888888888765
No 161
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=46.88 E-value=34 Score=24.95 Aligned_cols=36 Identities=19% Similarity=0.078 Sum_probs=26.0
Q ss_pred EEEEeCCHHHHHHHHHhhCCceeCCeEEEEEeeCCCCC
Q 032702 82 GFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKPRQP 119 (135)
Q Consensus 82 afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~~~ 119 (135)
|||.|.+..+|..+++.+....- ..++++.|..+.+
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~--~~~~v~~APeP~D 36 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRP--NSWRVSPAPEPDD 36 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCC--CCceEeeCCCccc
Confidence 69999999999999996554433 4457776655544
No 162
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=43.36 E-value=56 Score=18.94 Aligned_cols=27 Identities=22% Similarity=0.217 Sum_probs=22.7
Q ss_pred cccEEEEEeCCHHHHHHHHHhhCCcee
Q 032702 78 SKGFGFVKYATLEAAGKAIEGMDGKFL 104 (135)
Q Consensus 78 ~~g~afv~f~~~~~a~~a~~~l~~~~~ 104 (135)
-+||-||+=.+..+...|+..+.+...
T Consensus 43 lkGyIyVEA~~~~~V~~ai~gi~~i~~ 69 (84)
T PF03439_consen 43 LKGYIYVEAERESDVKEAIRGIRHIRG 69 (84)
T ss_dssp STSEEEEEESSHHHHHHHHTT-TTEEE
T ss_pred CceEEEEEeCCHHHHHHHHhcccceee
Confidence 578999999999999999998877653
No 163
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=41.48 E-value=5.4 Score=28.03 Aligned_cols=69 Identities=30% Similarity=0.441 Sum_probs=52.6
Q ss_pred CCCCCeEEEcC----CCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCce
Q 032702 34 AEPSTNLFVSG----LSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKF 103 (135)
Q Consensus 34 ~~~~~~v~v~n----lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 103 (135)
.....+++.|+ |...++++.+.++|..-+.+..+++..+. .+.++-++|+.+.-....-.++...++..
T Consensus 77 ~e~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~-d~rnrn~~~~~~qr~~~~P~~~~~y~~l~ 149 (267)
T KOG4454|consen 77 DEEQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDN-DGRNRNFGFVTYQRLCAVPFALDLYQGLE 149 (267)
T ss_pred chhhcccccCCCcchhhhhcchhhheeeecccCCCCCccccccc-cCCccCccchhhhhhhcCcHHhhhhcccC
Confidence 34456777787 88888999999999998988888888774 57788899998887666666666555443
No 164
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=41.05 E-value=2e+02 Score=23.58 Aligned_cols=71 Identities=6% Similarity=0.078 Sum_probs=50.6
Q ss_pred CeEEEc-CCCCCCCHHHHHHHhhccCC-----eEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEE
Q 032702 38 TNLFVS-GLSKRTTDETLRDTFSAFGE-----VVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFV 111 (135)
Q Consensus 38 ~~v~v~-nlp~~~~~~~l~~~f~~~g~-----i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 111 (135)
.++||. +=...++..+|-.++..-+. |-.+.+... |.||+... ..+...+..|.+..+.|++|.|
T Consensus 487 ~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~~--------~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~~ 557 (629)
T PRK11634 487 QLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFAS--------HSTIELPK-GMPGEVLQHFTRTRILNKPMNM 557 (629)
T ss_pred EEEEEecccccCCCHHHHHHHHHhhcCCChhhCCcEEEeCC--------ceEEEcCh-hhHHHHHHHhccccccCCceEE
Confidence 356663 44567777888777765443 344555433 88998874 5688889999999999999999
Q ss_pred EeeCCC
Q 032702 112 EYAKPR 117 (135)
Q Consensus 112 ~~a~~~ 117 (135)
+.+...
T Consensus 558 ~~~~~~ 563 (629)
T PRK11634 558 QLLGDA 563 (629)
T ss_pred EECCCC
Confidence 988533
No 165
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=38.47 E-value=86 Score=18.55 Aligned_cols=47 Identities=15% Similarity=0.307 Sum_probs=30.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeC
Q 032702 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYA 87 (135)
Q Consensus 38 ~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~ 87 (135)
.-||||++...+.+.--..+.+..++-.-+-+..+ .+ ..||.|-.+.
T Consensus 26 ~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~-~n--eqG~~~~t~G 72 (86)
T PF09707_consen 26 PGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSD-NN--EQGFDFRTLG 72 (86)
T ss_pred CCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEcc-CC--CCCEEEEEeC
Confidence 46899999999888766666665444444433333 23 5678887773
No 166
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=38.13 E-value=55 Score=23.61 Aligned_cols=34 Identities=9% Similarity=-0.019 Sum_probs=25.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee
Q 032702 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVK 71 (135)
Q Consensus 38 ~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~ 71 (135)
....|+|||+.++-.-+.+++...-.+..+.+|.
T Consensus 96 ~~~vVaNlPY~Isspii~kll~~~~~~~~~v~M~ 129 (259)
T COG0030 96 PYKVVANLPYNISSPILFKLLEEKFIIQDMVLMV 129 (259)
T ss_pred CCEEEEcCCCcccHHHHHHHHhccCccceEEEEe
Confidence 3566899999999999999987654444444444
No 167
>PRK11901 hypothetical protein; Reviewed
Probab=36.42 E-value=92 Score=23.32 Aligned_cols=61 Identities=18% Similarity=0.188 Sum_probs=37.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcc-cEEEEEeCCHHHHHHHHHhhCCc
Q 032702 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSK-GFGFVKYATLEAAGKAIEGMDGK 102 (135)
Q Consensus 38 ~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~-g~afv~f~~~~~a~~a~~~l~~~ 102 (135)
.+|-|.. ...++.|..|...++ +..+.+..-..+|+.- -.-|-.|.+.++|..|+..|...
T Consensus 246 YTLQL~A---as~~~~L~~f~~~~~-L~~~~VYqT~RnGkpWYVVvyG~Y~Sr~eAk~Ai~sLPa~ 307 (327)
T PRK11901 246 YTLQLSS---ASRSDTLNAYAKKQN-LSHYHVYETKRDGKPWYVLVSGNYASSAEAKRAIATLPAE 307 (327)
T ss_pred eEEEeec---CCCHHHHHHHHHHcC-cCceEEEEEEECCceEEEEEecCcCCHHHHHHHHHhCCHH
Confidence 3444433 345777888887765 4445444443445431 23455688999999999988643
No 168
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=36.26 E-value=56 Score=18.21 Aligned_cols=34 Identities=24% Similarity=0.407 Sum_probs=23.0
Q ss_pred CCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEE
Q 032702 49 TTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFV 84 (135)
Q Consensus 49 ~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv 84 (135)
.-+.+|.+.|.+-.++.++.+...+.- .+|-|||
T Consensus 30 ~~e~eler~fl~~P~v~e~~l~EKKri--~~G~gyV 63 (64)
T PF13046_consen 30 LVEVELERHFLPLPEVKEVALYEKKRI--RKGAGYV 63 (64)
T ss_pred HHHHHhhhhccCCCCceEEEEEEEEee--eCCceeE
Confidence 345578888888889999988765432 3345554
No 169
>PHA01632 hypothetical protein
Probab=36.15 E-value=44 Score=18.07 Aligned_cols=19 Identities=21% Similarity=0.504 Sum_probs=16.0
Q ss_pred EcCCCCCCCHHHHHHHhhc
Q 032702 42 VSGLSKRTTDETLRDTFSA 60 (135)
Q Consensus 42 v~nlp~~~~~~~l~~~f~~ 60 (135)
|..+|..-++++|++++.+
T Consensus 21 ieqvp~kpteeelrkvlpk 39 (64)
T PHA01632 21 IEQVPQKPTEEELRKVLPK 39 (64)
T ss_pred hhhcCCCCCHHHHHHHHHH
Confidence 4689999999999988753
No 170
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=34.80 E-value=1.1e+02 Score=18.64 Aligned_cols=47 Identities=23% Similarity=0.367 Sum_probs=23.2
Q ss_pred CCCHHHHHHHh-hccCCeEEEEEeecCCC----CCcccEEEEEeCCHHHHHHH
Q 032702 48 RTTDETLRDTF-SAFGEVVHAKIVKHRES----GYSKGFGFVKYATLEAAGKA 95 (135)
Q Consensus 48 ~~~~~~l~~~f-~~~g~i~~~~~~~~~~~----~~~~g~afv~f~~~~~a~~a 95 (135)
..+..+|++-+ ..|+.-.++.++..-.| |...|+|.| |++.+.+...
T Consensus 30 tpsr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~kk~ 81 (99)
T PRK01178 30 TPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKERARKI 81 (99)
T ss_pred CCCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHHHHhh
Confidence 45556666555 44553333333332222 345556655 6666665544
No 171
>PF15063 TC1: Thyroid cancer protein 1
Probab=34.09 E-value=41 Score=19.44 Aligned_cols=30 Identities=13% Similarity=0.172 Sum_probs=23.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCe
Q 032702 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEV 64 (135)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i 64 (135)
...+.--+.||=.+++...|+.+|..-|+.
T Consensus 23 t~~RKkasaNIFe~vn~~qlqrLF~~sGD~ 52 (79)
T PF15063_consen 23 TASRKKASANIFENVNLDQLQRLFQKSGDK 52 (79)
T ss_pred hHHhhhhhhhhhhccCHHHHHHHHHHccch
Confidence 444455577888999999999999998854
No 172
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=33.66 E-value=74 Score=16.38 Aligned_cols=27 Identities=11% Similarity=0.282 Sum_probs=21.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCe
Q 032702 38 TNLFVSGLSKRTTDETLRDTFSAFGEV 64 (135)
Q Consensus 38 ~~v~v~nlp~~~~~~~l~~~f~~~g~i 64 (135)
..+++.+.........|.+++..+|.-
T Consensus 2 ~~~~i~g~~~~~~~~~l~~~i~~~Gg~ 28 (72)
T cd00027 2 LTFVITGDLPSEERDELKELIEKLGGK 28 (72)
T ss_pred CEEEEEecCCCcCHHHHHHHHHHcCCE
Confidence 467777776688889999999988863
No 173
>PF04800 ETC_C1_NDUFA4: ETC complex I subunit conserved region; InterPro: IPR006885 This entry represents prokaryotic NADH-ubiquinone oxidoreductase subunits (1.6.5.3 from EC, 1.6.99.3 from EC) from complex I of the electron transport chain initially identified in Neurospora crassa as a 21 kDa protein [].; GO: 0016651 oxidoreductase activity, acting on NADH or NADPH, 0022900 electron transport chain, 0005743 mitochondrial inner membrane; PDB: 2JYA_A 2LJU_A.
Probab=33.17 E-value=1.2e+02 Score=18.57 Aligned_cols=50 Identities=26% Similarity=0.225 Sum_probs=20.3
Q ss_pred CCcccE-EEEEeCCHHHHHHHHHhhCCceeCCeEEEEEeeCCCCCCCCCCCCCCCCcCC
Q 032702 76 GYSKGF-GFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKPRQPPTLPSQNNTNFQYG 133 (135)
Q Consensus 76 ~~~~g~-afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~ 133 (135)
+..... .-+.|.+.++|.+.++. +|. ...|.....+. ..+.+..-||.+.
T Consensus 44 ~D~~~q~v~l~F~skE~Ai~yaer-~G~-----~Y~V~~p~~r~--~~~ksY~dNF~~~ 94 (101)
T PF04800_consen 44 GDPLSQSVRLKFDSKEDAIAYAER-NGW-----DYEVEEPKKRK--RRPKSYADNFSWN 94 (101)
T ss_dssp --SEEE-CEEEESSHHHHHHHHHH-CT------EEEEE-STT-----------------
T ss_pred CChhhCeeEeeeCCHHHHHHHHHH-cCC-----eEEEeCCCCCc--CCcccHHHhCCcC
Confidence 334443 67789999999998883 443 33444443332 2333444455544
No 174
>PF14893 PNMA: PNMA
Probab=33.09 E-value=38 Score=25.34 Aligned_cols=25 Identities=16% Similarity=0.517 Sum_probs=20.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhh
Q 032702 35 EPSTNLFVSGLSKRTTDETLRDTFS 59 (135)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~ 59 (135)
.....+.|.+||.++++.++++.+.
T Consensus 16 ~~~r~lLv~giP~dc~~~ei~e~l~ 40 (331)
T PF14893_consen 16 DPQRALLVLGIPEDCEEAEIEEALQ 40 (331)
T ss_pred ChhhhheeecCCCCCCHHHHHHHHH
Confidence 3445788999999999999888875
No 175
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=33.05 E-value=36 Score=16.63 Aligned_cols=16 Identities=19% Similarity=0.470 Sum_probs=9.8
Q ss_pred CCCCHHHHHHHhhccC
Q 032702 47 KRTTDETLRDTFSAFG 62 (135)
Q Consensus 47 ~~~~~~~l~~~f~~~g 62 (135)
.++++.+|+++|.+..
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 4678899999987653
No 176
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=31.69 E-value=1.1e+02 Score=18.52 Aligned_cols=48 Identities=15% Similarity=0.246 Sum_probs=28.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCC
Q 032702 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYAT 88 (135)
Q Consensus 38 ~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~ 88 (135)
.-||||++...+.+..-..+.+..++-.-+-+..+ .+ ..||.|-.+.+
T Consensus 28 ~GVyVg~~S~rVRd~lW~~v~~~~~~G~avmv~~~-~~--eqG~~~~t~G~ 75 (97)
T PRK11558 28 AGVYVGDVSRRIREMIWQQVTQLAEEGNVVMAWAT-NT--ESGFEFQTFGE 75 (97)
T ss_pred CCcEEcCCCHHHHHHHHHHHHHhCCCCcEEEEEcC-CC--CCCcEEEecCC
Confidence 46899998888877654444454544333333333 22 23788887764
No 177
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=31.19 E-value=87 Score=17.45 Aligned_cols=24 Identities=13% Similarity=0.157 Sum_probs=19.9
Q ss_pred EEEEEeCCHHHHHHHHHhhCCcee
Q 032702 81 FGFVKYATLEAAGKAIEGMDGKFL 104 (135)
Q Consensus 81 ~afv~f~~~~~a~~a~~~l~~~~~ 104 (135)
+.++.|.+..+|.++-+.|....+
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi 26 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGI 26 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCC
Confidence 689999999999999887775544
No 178
>PF15407 Spo7_2_N: Sporulation protein family 7
Probab=31.02 E-value=17 Score=20.46 Aligned_cols=24 Identities=8% Similarity=0.170 Sum_probs=16.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHh
Q 032702 35 EPSTNLFVSGLSKRTTDETLRDTF 58 (135)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f 58 (135)
.-+..+|||.||..+-.+.=..++
T Consensus 25 ~tSr~vflG~IP~~W~~~~~~~~~ 48 (67)
T PF15407_consen 25 LTSRRVFLGPIPEIWLQDHRKSWY 48 (67)
T ss_pred HcCceEEECCCChHHHHcCcchHH
Confidence 345699999999877765433333
No 179
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=30.87 E-value=1.7e+02 Score=19.79 Aligned_cols=60 Identities=13% Similarity=0.202 Sum_probs=40.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCC-CCcccEEEEEeCCHHHHHHHHHhh
Q 032702 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRES-GYSKGFGFVKYATLEAAGKAIEGM 99 (135)
Q Consensus 38 ~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~-~~~~g~afv~f~~~~~a~~a~~~l 99 (135)
..=||+|....-....|.+.|...|. .+.++....+ ..+.++-.+.+.+.+++..++..+
T Consensus 19 ~VR~ItN~SSG~~G~~lA~~~~~~Ga--~V~li~g~~~~~~p~~~~~i~v~sa~em~~~~~~~ 79 (185)
T PF04127_consen 19 PVRFITNRSSGKMGAALAEEAARRGA--EVTLIHGPSSLPPPPGVKVIRVESAEEMLEAVKEL 79 (185)
T ss_dssp SSEEEEES--SHHHHHHHHHHHHTT---EEEEEE-TTS----TTEEEEE-SSHHHHHHHHHHH
T ss_pred CceEecCCCcCHHHHHHHHHHHHCCC--EEEEEecCccccccccceEEEecchhhhhhhhccc
Confidence 36678999999999999999987773 4444444322 225589999999999999888764
No 180
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=30.53 E-value=1.7e+02 Score=20.08 Aligned_cols=49 Identities=27% Similarity=0.164 Sum_probs=33.5
Q ss_pred CCHHHHHHHhhcc-CCeEEEEEeecCCCC--CcccEEEEEeCCHHHHHHHHHh
Q 032702 49 TTDETLRDTFSAF-GEVVHAKIVKHRESG--YSKGFGFVKYATLEAAGKAIEG 98 (135)
Q Consensus 49 ~~~~~l~~~f~~~-g~i~~~~~~~~~~~~--~~~g~afv~f~~~~~a~~a~~~ 98 (135)
.++++|..+...- |.+..+.+... .++ ..+|-.||+|...+.+.+.++.
T Consensus 118 ~td~ql~~l~qw~~~k~~nv~mr~~-~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 118 ITDDQLDDLNQWASGKGHNVKMRRH-GNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred CCHHHHHHHHHHhcccceEeecccc-CCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 5666666665433 57777766554 233 4578899999999998887663
No 181
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=28.99 E-value=55 Score=23.37 Aligned_cols=33 Identities=24% Similarity=0.380 Sum_probs=26.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEE
Q 032702 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVH 66 (135)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~ 66 (135)
......+|+-|+|...+++.|.++..+.|-+..
T Consensus 37 ~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~ 69 (261)
T KOG4008|consen 37 SNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQE 69 (261)
T ss_pred cccccceeeecccccccHHHHHHHHHHhhhhhh
Confidence 344568999999999999999999988774433
No 182
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=28.86 E-value=43 Score=24.19 Aligned_cols=83 Identities=19% Similarity=0.198 Sum_probs=54.1
Q ss_pred CeEEEcCCCCCCCHHH---HHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEee
Q 032702 38 TNLFVSGLSKRTTDET---LRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYA 114 (135)
Q Consensus 38 ~~v~v~nlp~~~~~~~---l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 114 (135)
...+++++-..+..+- +..+|..+..+....++.++ -+..++++|+.|........+...-++..+....++..-.
T Consensus 97 f~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~-p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~g 175 (290)
T KOG0226|consen 97 FRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDR-PQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAG 175 (290)
T ss_pred ccccccccccccCCCCCCcchhhhccchhhhhhhhhhcC-CCccCcccccCcchhhhhhhhccccccccccCcceeeccc
Confidence 3444554444444332 36677777777777777773 4667789999999888877777776777777776665555
Q ss_pred CCCCCCC
Q 032702 115 KPRQPPT 121 (135)
Q Consensus 115 ~~~~~~~ 121 (135)
..-+++.
T Consensus 176 tswedPs 182 (290)
T KOG0226|consen 176 TSWEDPS 182 (290)
T ss_pred cccCCcc
Confidence 5444443
No 183
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=28.61 E-value=3e+02 Score=21.84 Aligned_cols=49 Identities=16% Similarity=0.173 Sum_probs=33.9
Q ss_pred HHHHHHHhh----ccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhC
Q 032702 51 DETLRDTFS----AFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100 (135)
Q Consensus 51 ~~~l~~~f~----~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~ 100 (135)
..+|..+|. .+|-|.++.+...+. .......++.|.+.+++..++..+.
T Consensus 203 g~dl~~l~~Gs~GtlGIIt~atlkl~p~-p~~~~~~~~~f~~~~~a~~~~~~~~ 255 (499)
T PRK11230 203 GFDLLALFTGSEGMLGVVTEVTVKLLPK-PPVARVLLASFDSVEKAGLAVGDII 255 (499)
T ss_pred ccchHhhhccCCCccEEEEEEEEEEEcC-CcceEEEEEECCCHHHHHHHHHHHH
Confidence 345666664 467778877766532 3345577889999999999887754
No 184
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=26.61 E-value=1.8e+02 Score=18.53 Aligned_cols=70 Identities=13% Similarity=0.193 Sum_probs=44.9
Q ss_pred CeEEEcCCCCC---CCHHHHHHHhhccC-CeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEe
Q 032702 38 TNLFVSGLSKR---TTDETLRDTFSAFG-EVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEY 113 (135)
Q Consensus 38 ~~v~v~nlp~~---~~~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 113 (135)
..|.|...... .+...+...+..-| .++.+....+ -..|.|.+.++..+|.+.|....-.+..+.+..
T Consensus 36 pavQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~~~~--------~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAlnl 107 (127)
T PRK10629 36 STLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITPEND--------SLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQD 107 (127)
T ss_pred ceEEEecCCCCCccchHHHHHHHHHHCCCCcceEEeeCC--------EEEEEECCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 34555544222 56667788887655 4455544222 778999999999999988876655555555555
Q ss_pred eC
Q 032702 114 AK 115 (135)
Q Consensus 114 a~ 115 (135)
+.
T Consensus 108 ~p 109 (127)
T PRK10629 108 DN 109 (127)
T ss_pred CC
Confidence 44
No 185
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=26.22 E-value=78 Score=22.49 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=20.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhh
Q 032702 37 STNLFVSGLSKRTTDETLRDTFS 59 (135)
Q Consensus 37 ~~~v~v~nlp~~~~~~~l~~~f~ 59 (135)
...++|+|||..++...|..++.
T Consensus 97 ~~~~vv~NlPy~is~~il~~ll~ 119 (262)
T PF00398_consen 97 QPLLVVGNLPYNISSPILRKLLE 119 (262)
T ss_dssp SEEEEEEEETGTGHHHHHHHHHH
T ss_pred CceEEEEEecccchHHHHHHHhh
Confidence 45678899999999999999987
No 186
>PHA03008 hypothetical protein; Provisional
Probab=25.45 E-value=87 Score=21.81 Aligned_cols=37 Identities=14% Similarity=0.205 Sum_probs=31.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeec
Q 032702 36 PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKH 72 (135)
Q Consensus 36 ~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~ 72 (135)
-.-.+||.|+..-.+...++-+|.+|..+.++-++.+
T Consensus 20 ~~d~~~~snit~~h~~n~i~~ff~~~d~~~~~ifvpg 56 (234)
T PHA03008 20 ICDIAFISNITHIHDHNIIKIFFDKFDDFDEIIFVPG 56 (234)
T ss_pred cccEEEEecccccccccHHHHHHhhccccceEEEccC
Confidence 3447899999999999999999999999988877765
No 187
>PRK10905 cell division protein DamX; Validated
Probab=25.18 E-value=2.2e+02 Score=21.39 Aligned_cols=61 Identities=15% Similarity=0.093 Sum_probs=36.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCc-ccEEEEEeCCHHHHHHHHHhhCCc
Q 032702 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYS-KGFGFVKYATLEAAGKAIEGMDGK 102 (135)
Q Consensus 38 ~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~-~g~afv~f~~~~~a~~a~~~l~~~ 102 (135)
++|-|+.+ .+.+.|.+|..+.| +....+.....+|+. .-.-+-.|.+.++|++|+..|...
T Consensus 248 YTLQL~A~---Ss~~~l~~fakKlg-L~~y~vy~TtRnGkpWYVV~yG~YaSraeAk~AiakLPa~ 309 (328)
T PRK10905 248 YTLQLSSS---SNYDNLNGWAKKEN-LKNYVVYETTRNGQPWYVLVSGVYASKEEAKRAVSTLPAD 309 (328)
T ss_pred eEEEEEec---CCHHHHHHHHHHcC-CCceEEEEeccCCceEEEEEecCCCCHHHHHHHHHHCCHH
Confidence 45555443 35567888877765 332223333244542 234556788999999999987643
No 188
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=24.83 E-value=1.6e+02 Score=17.36 Aligned_cols=45 Identities=18% Similarity=0.072 Sum_probs=30.6
Q ss_pred HHHHHHhhccC-CeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhC
Q 032702 52 ETLRDTFSAFG-EVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100 (135)
Q Consensus 52 ~~l~~~f~~~g-~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~ 100 (135)
+.+++.++..| .+..+.+..+... -+..+++.|.+.+.++.-.+.
T Consensus 23 ~a~~~~~e~~Gg~l~~~y~t~G~yD----~v~i~eaPD~~~a~~~~l~i~ 68 (91)
T PF08734_consen 23 EAVRALIEALGGKLKSFYWTLGEYD----FVVIVEAPDDETAAAASLAIR 68 (91)
T ss_pred HHHHHHHHHcCCEEEEEEEecCCCC----EEEEEEcCCHHHHHHHHHHHH
Confidence 34666776665 7888888766432 378888888888777664443
No 189
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=24.06 E-value=1.2e+02 Score=15.81 Aligned_cols=54 Identities=20% Similarity=0.169 Sum_probs=38.4
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCH----HHHHHHHHh
Q 032702 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATL----EAAGKAIEG 98 (135)
Q Consensus 39 ~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~----~~a~~a~~~ 98 (135)
++.|.++....-...+++.+.....+..+.+-... +..-|.|... ++...+++.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~------~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLET------KTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTT------TEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCC------CEEEEEEecCCCCHHHHHHHHHH
Confidence 46677787777788899999988888888775542 3777888632 555555553
No 190
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=23.79 E-value=1.1e+02 Score=21.85 Aligned_cols=22 Identities=18% Similarity=0.073 Sum_probs=18.5
Q ss_pred eEEEcCCCCCCCHHHHHHHhhc
Q 032702 39 NLFVSGLSKRTTDETLRDTFSA 60 (135)
Q Consensus 39 ~v~v~nlp~~~~~~~l~~~f~~ 60 (135)
.+.|+|+|+.++...|.+++..
T Consensus 107 ~~vv~NlPY~iss~ii~~~l~~ 128 (272)
T PRK00274 107 LKVVANLPYNITTPLLFHLLEE 128 (272)
T ss_pred ceEEEeCCccchHHHHHHHHhc
Confidence 5678999999998888888854
No 191
>PF02946 GTF2I: GTF2I-like repeat; InterPro: IPR004212 This region of sequence similarity is found up to six times in a variety of proteins including general transcription factor II-I (GTF2I). It has been suggested that this may be a DNA binding domain [, ].; PDB: 2E3L_A 2D99_A 2DN4_A 2D9B_A 2EJE_A 1Q60_A 2DZR_A 2DN5_A 2DZQ_A 2ED2_A.
Probab=23.44 E-value=1.2e+02 Score=17.50 Aligned_cols=30 Identities=17% Similarity=0.264 Sum_probs=16.3
Q ss_pred CeEEEcCCCCCCCH--------HHHHHHhhccCCeEEE
Q 032702 38 TNLFVSGLSKRTTD--------ETLRDTFSAFGEVVHA 67 (135)
Q Consensus 38 ~~v~v~nlp~~~~~--------~~l~~~f~~~g~i~~~ 67 (135)
..|+|.+||.++.. ..|+.+++.-..|..+
T Consensus 35 ~~v~V~GLPegi~fr~P~~Y~i~~L~~IL~~~~~I~Fv 72 (76)
T PF02946_consen 35 EAVYVQGLPEGIPFRRPSNYGIPRLEKILEASSRIRFV 72 (76)
T ss_dssp TTEEEES--TT--SS-TTTS-HHHHHHHHHTTTT-EEE
T ss_pred CcEEEEeCCCCCcCCCCCcCCHHHHHHHHHccCCcEEE
Confidence 46888888886653 5677777665555443
No 192
>PF00585 Thr_dehydrat_C: C-terminal regulatory domain of Threonine dehydratase; InterPro: IPR001721 Threonine dehydratases including Serine/threonine dehydratase (see IPR001926 from INTERPRO) contain a common C-terminal region that may have a regulatory role. Some members contain two copies of this region [].; GO: 0004794 L-threonine ammonia-lyase activity, 0009097 isoleucine biosynthetic process; PDB: 1TDJ_A 3IAU_A.
Probab=22.81 E-value=1.7e+02 Score=17.15 Aligned_cols=60 Identities=20% Similarity=0.189 Sum_probs=33.0
Q ss_pred EEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeC--CHHHHHHHHHhhCCc
Q 032702 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYA--TLEAAGKAIEGMDGK 102 (135)
Q Consensus 41 ~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~--~~~~a~~a~~~l~~~ 102 (135)
|.-.+|.... .|++++...+.-..+..-..+.++...+..+|-+. +.++.+..++.|...
T Consensus 13 ~~v~~PE~pG--al~~F~~~l~~~~nITeF~YR~~~~~~a~vlvgi~v~~~~~~~~l~~~L~~~ 74 (91)
T PF00585_consen 13 FAVEFPERPG--ALKRFLDALGPRNNITEFHYRYSGDDFARVLVGIEVPDAEDLEELIERLKAL 74 (91)
T ss_dssp EEEE--BSTT--HCHHHHHCCSSSE-EEEEEEE-TTTSCSEEEEEEE-SSTHHHHHHHHHHTSS
T ss_pred EEEECCCCcc--HHHHHHHHhCCCceEEEEEEcCCCCCeeeEEEEEEeCCHHHHHHHHHHHHHc
Confidence 3334554333 46677776665544544444556667788888886 445556666666543
No 193
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=22.47 E-value=1.2e+02 Score=22.25 Aligned_cols=32 Identities=6% Similarity=0.041 Sum_probs=22.5
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCeEEEEEe
Q 032702 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIV 70 (135)
Q Consensus 39 ~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~ 70 (135)
.+.|+|+|+.++...+.+++.....+....+|
T Consensus 103 d~VvaNlPY~Istpil~~ll~~~~~~~~~vlm 134 (294)
T PTZ00338 103 DVCVANVPYQISSPLVFKLLAHRPLFRCAVLM 134 (294)
T ss_pred CEEEecCCcccCcHHHHHHHhcCCCCceeeee
Confidence 46789999999999988888643334443333
No 194
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=22.45 E-value=46 Score=25.61 Aligned_cols=61 Identities=13% Similarity=0.232 Sum_probs=44.9
Q ss_pred CCeEEEcCCCCCCCHH--------HHHHHhhc--cCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHH
Q 032702 37 STNLFVSGLSKRTTDE--------TLRDTFSA--FGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97 (135)
Q Consensus 37 ~~~v~v~nlp~~~~~~--------~l~~~f~~--~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~ 97 (135)
.+.+|+.++...-... ++...|.. .+.+..+.+.++..+....|-.|++|...+.+++..-
T Consensus 174 qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 174 QRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 3567776666544443 78888877 5667777777775566678889999999999998873
No 195
>PF05189 RTC_insert: RNA 3'-terminal phosphate cyclase (RTC), insert domain; InterPro: IPR013796 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. This entry contains the insert-domain of approximately 100 amino acids.; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=21.73 E-value=1.8e+02 Score=17.32 Aligned_cols=48 Identities=19% Similarity=0.337 Sum_probs=25.6
Q ss_pred eEEEcCCCCCCCHHHHH---HHhhccCCeEEEEE--eecCCCCCcccEEEEEe
Q 032702 39 NLFVSGLSKRTTDETLR---DTFSAFGEVVHAKI--VKHRESGYSKGFGFVKY 86 (135)
Q Consensus 39 ~v~v~nlp~~~~~~~l~---~~f~~~g~i~~~~~--~~~~~~~~~~g~afv~f 86 (135)
..|+.+||.++.+..+. +.|..+..-..+.. ......+...|.+.+.+
T Consensus 12 ~a~~a~lp~~va~R~~~~a~~~L~~~~~~v~i~~d~~~~~~~~~~~G~gi~l~ 64 (103)
T PF05189_consen 12 IAFVAGLPSSVAERMANAARKRLNWYGPDVEIETDYRESDDSAFGPGSGISLV 64 (103)
T ss_dssp EEEEESS-CHHHHHHHHHHHHHHCTTCSEEEEEEEEE-CCCCGCSSEEEEEEE
T ss_pred EEEEcCCCHHHHHHHHHHHHHHhhhhCCCeEEEEecccCccCCCCCceEEEEE
Confidence 45788999999987654 44445543333332 11223445566655544
No 196
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=21.45 E-value=1.8e+02 Score=18.85 Aligned_cols=23 Identities=13% Similarity=0.082 Sum_probs=18.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhc
Q 032702 38 TNLFVSGLSKRTTDETLRDTFSA 60 (135)
Q Consensus 38 ~~v~v~nlp~~~~~~~l~~~f~~ 60 (135)
.-+.++|+|..++...+.+++..
T Consensus 78 ~d~vi~n~Py~~~~~~i~~~l~~ 100 (169)
T smart00650 78 PYKVVGNLPYNISTPILFKLLEE 100 (169)
T ss_pred CCEEEECCCcccHHHHHHHHHhc
Confidence 34668999999998888888764
No 197
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=20.74 E-value=3.5e+02 Score=21.48 Aligned_cols=58 Identities=14% Similarity=0.154 Sum_probs=41.0
Q ss_pred EcCCCCCC---CHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEE
Q 032702 42 VSGLSKRT---TDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVI 109 (135)
Q Consensus 42 v~nlp~~~---~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l 109 (135)
||||+.-. ....+.++-.+||.+-.+.+-. .-.|...+.+.|+.++. -++..+.+|..
T Consensus 37 IGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~---------~~~Vviss~~~akE~l~-~~d~~fa~Rp~ 97 (489)
T KOG0156|consen 37 IGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGS---------VPVVVISSYEAAKEVLV-KQDLEFADRPD 97 (489)
T ss_pred cccHHHcCCCchhHHHHHHHHHhCCeEEEEecC---------ceEEEECCHHHHHHHHH-hCCccccCCCC
Confidence 78777433 3456777777999998776622 34777888899999988 45666777664
No 198
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=20.33 E-value=94 Score=24.27 Aligned_cols=21 Identities=14% Similarity=0.147 Sum_probs=16.1
Q ss_pred CCeEEE---cCCCCCCCHHHHHHH
Q 032702 37 STNLFV---SGLSKRTTDETLRDT 57 (135)
Q Consensus 37 ~~~v~v---~nlp~~~~~~~l~~~ 57 (135)
...||| +|+||++++..++.+
T Consensus 350 ~k~VmVLAATN~PWdiDEAlrRRl 373 (491)
T KOG0738|consen 350 SKVVMVLAATNFPWDIDEALRRRL 373 (491)
T ss_pred ceeEEEEeccCCCcchHHHHHHHH
Confidence 456777 799999999865544
No 199
>PTZ00071 40S ribosomal protein S24; Provisional
Probab=20.20 E-value=2.6e+02 Score=18.06 Aligned_cols=47 Identities=17% Similarity=0.408 Sum_probs=22.7
Q ss_pred CCCHHHHHHHhh-ccC-CeEEEEE----eecCCCCCcccEEEEEeCCHHHHHHH
Q 032702 48 RTTDETLRDTFS-AFG-EVVHAKI----VKHRESGYSKGFGFVKYATLEAAGKA 95 (135)
Q Consensus 48 ~~~~~~l~~~f~-~~g-~i~~~~~----~~~~~~~~~~g~afv~f~~~~~a~~a 95 (135)
..+..+|++-+. .|+ .-.++.+ ......|...|||.| |++.+.+...
T Consensus 35 TpSr~eirekLA~~~~v~d~~~Vvv~~~~T~fG~g~StG~a~I-Yds~e~~kk~ 87 (132)
T PTZ00071 35 TVSKKDIKEKLAKQYKVADARTIVLFGFKTKFGGGKTTGFGLI-YDNLAALKKF 87 (132)
T ss_pred CCCHHHHHHHHHHHhCCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 456666666663 455 2222222 222223445566665 5666555444
Done!