Query 032702
Match_columns 135
No_of_seqs 112 out of 1649
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 07:24:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032702.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032702hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 99.9 1.2E-23 3.9E-28 128.2 11.7 83 34-116 16-98 (99)
2 2dgo_A Cytotoxic granule-assoc 99.9 4.8E-22 1.6E-26 123.8 15.8 94 31-124 9-102 (115)
3 2cpz_A CUG triplet repeat RNA- 99.9 3.5E-22 1.2E-26 124.5 14.7 92 31-122 19-110 (115)
4 2cq0_A Eukaryotic translation 99.9 1E-21 3.5E-26 120.1 13.8 90 32-121 10-99 (103)
5 1x5u_A Splicing factor 3B subu 99.9 5.9E-22 2E-26 121.5 12.8 91 32-122 10-100 (105)
6 2do4_A Squamous cell carcinoma 99.9 1.2E-21 4.1E-26 119.2 13.8 88 31-119 11-98 (100)
7 3s8s_A Histone-lysine N-methyl 99.9 5.8E-22 2E-26 122.8 12.5 85 35-119 4-88 (110)
8 1x4h_A RNA-binding protein 28; 99.9 1.6E-21 5.4E-26 120.6 14.0 91 32-122 10-106 (111)
9 2dgs_A DAZ-associated protein 99.9 1.2E-21 4E-26 119.0 13.0 90 32-122 5-94 (99)
10 1whw_A Hypothetical protein ri 99.9 1.3E-21 4.3E-26 118.8 13.0 89 34-122 5-93 (99)
11 2khc_A Testis-specific RNP-typ 99.9 1.3E-21 4.4E-26 122.4 13.0 84 32-115 35-118 (118)
12 3bs9_A Nucleolysin TIA-1 isofo 99.9 8.4E-22 2.9E-26 116.8 11.5 84 35-118 4-87 (87)
13 3md1_A Nuclear and cytoplasmic 99.9 1.3E-21 4.5E-26 115.0 12.1 82 37-118 1-82 (83)
14 2cph_A RNA binding motif prote 99.9 1.6E-21 5.5E-26 119.9 13.0 91 31-121 9-101 (107)
15 2dnz_A Probable RNA-binding pr 99.9 1.5E-21 5.1E-26 117.6 12.4 88 35-122 3-90 (95)
16 2cqc_A Arginine/serine-rich sp 99.9 1.9E-21 6.4E-26 117.1 12.8 85 32-116 10-94 (95)
17 2cqb_A Peptidyl-prolyl CIS-tra 99.9 1E-21 3.5E-26 119.8 11.7 90 33-122 8-97 (102)
18 1u6f_A Tcubp1, RNA-binding pro 99.9 4.1E-21 1.4E-25 123.3 14.9 92 31-122 36-127 (139)
19 2dnm_A SRP46 splicing factor; 99.9 8.7E-22 3E-26 120.4 11.1 90 32-121 8-97 (103)
20 2d9p_A Polyadenylate-binding p 99.9 2.7E-21 9.3E-26 118.2 13.4 89 32-122 10-98 (103)
21 2lxi_A RNA-binding protein 10; 99.9 1.4E-22 4.7E-27 121.6 7.3 84 37-120 1-86 (91)
22 2e5h_A Zinc finger CCHC-type a 99.9 2.4E-21 8E-26 116.5 12.8 83 33-115 12-94 (94)
23 2cqd_A RNA-binding region cont 99.9 6.7E-21 2.3E-25 118.8 15.1 90 31-121 11-100 (116)
24 2dng_A Eukaryotic translation 99.9 5.9E-21 2E-25 116.7 14.4 88 33-122 11-98 (103)
25 2cpe_A RNA-binding protein EWS 99.9 2.7E-21 9.2E-26 120.1 12.9 91 31-121 9-107 (113)
26 1p27_B RNA-binding protein 8A; 99.9 8.7E-22 3E-26 120.9 10.6 87 33-119 19-105 (106)
27 2dnh_A Bruno-like 5, RNA bindi 99.9 3.3E-21 1.1E-25 118.1 13.1 88 33-121 11-101 (105)
28 1wi8_A EIF-4B, eukaryotic tran 99.9 4.3E-21 1.5E-25 117.5 13.6 87 34-122 12-99 (104)
29 1x5s_A Cold-inducible RNA-bind 99.9 1.5E-21 5.3E-26 119.0 11.5 90 33-122 8-97 (102)
30 2fy1_A RNA-binding motif prote 99.9 1.8E-21 6.1E-26 121.7 11.9 87 34-121 4-90 (116)
31 2la6_A RNA-binding protein FUS 99.9 1.7E-21 5.7E-26 118.4 11.3 85 31-115 7-99 (99)
32 3mdf_A Peptidyl-prolyl CIS-tra 99.9 2.1E-21 7.3E-26 114.6 11.3 82 34-115 4-85 (85)
33 1oo0_B CG8781-PA, drosophila Y 99.9 1.6E-21 5.5E-26 120.5 11.1 89 32-120 21-109 (110)
34 2cqi_A Nucleolysin TIAR; RNA r 99.9 1.2E-20 4E-25 115.4 14.8 89 32-122 10-98 (103)
35 2dgp_A Bruno-like 4, RNA bindi 99.9 1.6E-21 5.6E-26 119.7 11.0 90 32-121 8-100 (106)
36 2kxn_B Transformer-2 protein h 99.9 1.1E-21 3.6E-26 124.8 10.2 88 32-119 41-128 (129)
37 2jrs_A RNA-binding protein 39; 99.9 2.4E-21 8.3E-26 119.6 11.4 87 32-118 21-107 (108)
38 2cq3_A RNA-binding protein 9; 99.9 1.9E-20 6.5E-25 114.4 15.1 89 31-121 9-97 (103)
39 2x1f_A MRNA 3'-END-processing 99.9 3.4E-21 1.2E-25 116.4 11.5 84 36-119 1-84 (96)
40 2cpf_A RNA binding motif prote 99.9 4.1E-21 1.4E-25 116.3 11.9 88 35-122 3-93 (98)
41 2rs2_A Musashi-1, RNA-binding 99.9 2.9E-21 9.9E-26 119.4 11.4 92 29-121 17-108 (109)
42 1x5t_A Splicing factor 3B subu 99.9 3.1E-21 1E-25 116.4 11.2 87 35-121 3-90 (96)
43 2dhg_A TRNA selenocysteine ass 99.9 3E-21 1E-25 118.2 11.2 90 33-123 5-96 (104)
44 2cqg_A TDP-43, TAR DNA-binding 99.9 2E-20 6.9E-25 114.3 14.8 90 32-123 10-99 (103)
45 2dh8_A DAZ-associated protein 99.9 3.6E-21 1.2E-25 118.0 11.5 90 32-122 11-100 (105)
46 3ex7_B RNA-binding protein 8A; 99.9 1.5E-21 5E-26 123.4 9.8 90 32-121 17-106 (126)
47 2lkz_A RNA-binding protein 5; 99.9 1.1E-21 3.8E-26 118.5 8.7 84 33-116 5-94 (95)
48 3p5t_L Cleavage and polyadenyl 99.9 3E-22 1E-26 119.8 6.0 84 38-121 2-87 (90)
49 1x4b_A Heterogeneous nuclear r 99.9 6.1E-21 2.1E-25 119.0 11.5 89 34-123 24-112 (116)
50 2div_A TRNA selenocysteine ass 99.9 4.4E-21 1.5E-25 116.4 10.4 87 34-120 6-97 (99)
51 1x4a_A Splicing factor, argini 99.9 5.8E-20 2E-24 113.3 15.5 88 31-121 16-103 (109)
52 2cq4_A RNA binding motif prote 99.9 2.1E-21 7.1E-26 120.8 8.9 86 33-119 21-106 (114)
53 2do0_A HnRNP M, heterogeneous 99.9 7.2E-20 2.5E-24 113.7 15.8 86 33-119 11-96 (114)
54 4f25_A Polyadenylate-binding p 99.9 9.5E-21 3.3E-25 118.1 11.5 83 37-121 5-87 (115)
55 2j76_E EIF-4B, EIF4B, eukaryot 99.9 9.5E-22 3.3E-26 119.8 6.8 89 28-118 10-99 (100)
56 1h2v_Z 20 kDa nuclear CAP bind 99.9 2.1E-20 7.1E-25 122.2 13.6 89 33-121 35-123 (156)
57 2ywk_A Putative RNA-binding pr 99.9 9.8E-21 3.3E-25 114.0 10.9 84 32-116 11-94 (95)
58 4a8x_A RNA-binding protein wit 99.9 8.9E-21 3.1E-25 112.5 10.6 84 36-119 3-87 (88)
59 3ulh_A THO complex subunit 4; 99.9 1.8E-20 6.2E-25 115.2 12.2 83 32-115 24-106 (107)
60 2cqp_A RNA-binding protein 12; 99.9 8.6E-21 2.9E-25 114.9 10.3 86 33-118 11-96 (98)
61 2m2b_A RNA-binding protein 10; 99.9 4E-21 1.4E-25 122.4 9.1 88 33-121 19-112 (131)
62 2kt5_A RNA and export factor-b 99.8 1E-19 3.5E-24 114.7 15.1 88 32-120 30-117 (124)
63 2dgx_A KIAA0430 protein; RRM d 99.8 2.6E-20 8.9E-25 112.6 11.7 83 35-120 7-93 (96)
64 2fc8_A NCL protein; structure 99.8 7.1E-20 2.4E-24 111.6 13.7 87 32-121 10-96 (102)
65 3s7r_A Heterogeneous nuclear r 99.8 3.1E-20 1.1E-24 110.1 11.6 82 32-114 6-87 (87)
66 1rk8_A CG8781-PA, CG8781-PA pr 99.8 2.1E-20 7E-25 123.4 11.8 89 33-121 68-156 (165)
67 3ucg_A Polyadenylate-binding p 99.8 2.6E-20 9E-25 110.8 11.2 82 36-118 5-86 (89)
68 2dgv_A HnRNP M, heterogeneous 99.8 2.3E-20 7.8E-25 111.8 10.9 85 34-120 5-89 (92)
69 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 5.1E-20 1.7E-24 118.0 13.2 84 31-114 57-140 (140)
70 2jwn_A Embryonic polyadenylate 99.8 9.4E-21 3.2E-25 119.4 9.5 84 35-119 34-117 (124)
71 2err_A Ataxin-2-binding protei 99.8 1.4E-20 4.9E-25 116.2 10.1 86 31-118 23-108 (109)
72 1sjq_A Polypyrimidine tract-bi 99.8 1.8E-20 6.2E-25 114.8 10.3 83 34-122 13-97 (105)
73 2cq1_A PTB-like protein L; RRM 99.8 1.4E-19 4.9E-24 110.4 14.0 85 31-121 9-95 (101)
74 3n9u_C Cleavage and polyadenyl 99.8 1.8E-20 6.2E-25 122.7 10.7 82 36-117 54-137 (156)
75 2dgw_A Probable RNA-binding pr 99.8 5.9E-20 2E-24 109.8 12.1 84 33-119 6-89 (91)
76 3ns6_A Eukaryotic translation 99.8 3.1E-21 1E-25 117.6 6.3 83 35-117 4-93 (100)
77 2fc9_A NCL protein; structure 99.8 1.1E-19 3.7E-24 110.7 13.2 85 33-121 11-95 (101)
78 2kn4_A Immunoglobulin G-bindin 99.8 5.4E-20 1.8E-24 120.3 12.7 88 33-120 66-153 (158)
79 2cpi_A CCR4-NOT transcription 99.8 5.8E-20 2E-24 113.8 12.1 87 33-119 11-103 (111)
80 1x4c_A Splicing factor, argini 99.8 1.9E-19 6.3E-24 111.0 14.3 81 34-121 12-97 (108)
81 1p1t_A Cleavage stimulation fa 99.8 5.7E-21 1.9E-25 116.8 6.8 87 34-120 5-91 (104)
82 1x5o_A RNA binding motif, sing 99.8 1.7E-19 5.8E-24 112.0 13.5 85 32-117 20-112 (114)
83 1wg5_A Heterogeneous nuclear r 99.8 9.7E-20 3.3E-24 111.6 12.2 87 32-120 10-97 (104)
84 2lea_A Serine/arginine-rich sp 99.8 1.3E-20 4.3E-25 120.7 8.1 90 32-121 42-131 (135)
85 2dis_A Unnamed protein product 99.8 8E-20 2.7E-24 112.6 11.3 87 35-121 6-96 (109)
86 1x4d_A Matrin 3; structural ge 99.8 9.7E-20 3.3E-24 111.2 11.4 83 34-122 12-97 (102)
87 2ek1_A RNA-binding protein 12; 99.8 1.7E-20 5.8E-25 113.0 7.8 82 35-116 13-94 (95)
88 2dgu_A Heterogeneous nuclear r 99.8 3.7E-19 1.3E-23 108.7 13.7 83 33-123 7-89 (103)
89 1x4e_A RNA binding motif, sing 99.8 7.9E-21 2.7E-25 112.3 5.8 81 35-115 3-83 (85)
90 1why_A Hypothetical protein ri 99.8 1.9E-19 6.4E-24 108.9 12.1 81 33-119 13-95 (97)
91 2cpx_A Hypothetical protein FL 99.8 2.9E-20 9.8E-25 115.7 8.7 85 34-122 22-110 (115)
92 1fj7_A Nucleolin RBD1, protein 99.8 5.6E-21 1.9E-25 116.4 4.9 87 33-121 13-99 (101)
93 1wel_A RNA-binding protein 12; 99.8 3.2E-20 1.1E-24 117.1 8.4 85 33-118 21-105 (124)
94 2jvo_A Nucleolar protein 3; nu 99.8 1E-19 3.5E-24 112.3 10.5 81 32-120 26-106 (108)
95 2dnq_A RNA-binding protein 4B; 99.8 2.4E-19 8.4E-24 106.9 11.8 80 34-121 5-84 (90)
96 1x4g_A Nucleolysin TIAR; struc 99.8 2.4E-19 8.1E-24 110.6 12.1 84 33-122 21-104 (109)
97 2dnp_A RNA-binding protein 14; 99.8 2.8E-19 9.5E-24 106.7 12.0 83 33-123 5-87 (90)
98 2db1_A Heterogeneous nuclear r 99.8 1.1E-19 3.9E-24 113.7 10.6 85 32-118 12-99 (118)
99 2dgt_A RNA-binding protein 30; 99.8 4.5E-19 1.5E-23 106.2 12.5 82 32-121 5-86 (92)
100 2xnq_A Nuclear polyadenylated 99.8 2.7E-19 9.2E-24 108.3 11.6 80 31-118 16-96 (97)
101 2nlw_A Eukaryotic translation 99.8 1.1E-19 3.8E-24 111.5 9.9 85 32-118 10-101 (105)
102 2ad9_A Polypyrimidine tract-bi 99.8 2.1E-19 7.1E-24 112.5 11.2 84 33-122 27-112 (119)
103 1wez_A HnRNP H', FTP-3, hetero 99.8 2.8E-19 9.4E-24 109.3 11.3 85 33-120 11-95 (102)
104 2cpj_A Non-POU domain-containi 99.8 2.9E-19 1E-23 108.4 11.3 84 32-121 10-93 (99)
105 2e5j_A Methenyltetrahydrofolat 99.8 2E-19 6.8E-24 108.8 10.6 84 31-119 13-96 (97)
106 2cpy_A RNA-binding protein 12; 99.8 1.4E-19 4.9E-24 112.6 10.1 84 33-118 11-95 (114)
107 1wex_A Hypothetical protein (r 99.8 3.7E-19 1.3E-23 109.1 11.7 82 33-120 11-94 (104)
108 1s79_A Lupus LA protein; RRM, 99.8 7.2E-20 2.5E-24 112.1 8.5 82 33-116 7-88 (103)
109 2cpd_A Apobec-1 stimulating pr 99.8 1.7E-18 5.7E-23 105.0 14.3 82 32-121 10-93 (99)
110 2mss_A Protein (musashi1); RNA 99.8 3.5E-20 1.2E-24 107.0 6.3 75 39-114 1-75 (75)
111 3r27_A HnRNP L, heterogeneous 99.8 3.6E-19 1.2E-23 108.0 11.0 80 33-118 17-98 (100)
112 1wf1_A RNA-binding protein RAL 99.8 1.4E-18 4.7E-23 107.3 13.4 80 33-120 23-103 (110)
113 2a3j_A U1 small nuclear ribonu 99.8 2.6E-19 8.8E-24 113.4 10.1 85 33-120 25-113 (127)
114 1fjc_A Nucleolin RBD2, protein 99.8 2E-19 7E-24 108.4 9.2 84 32-120 11-94 (96)
115 2f3j_A RNA and export factor b 99.8 5.6E-19 1.9E-23 117.8 12.0 85 34-119 85-169 (177)
116 1nu4_A U1A RNA binding domain; 99.8 1.4E-19 4.7E-24 109.3 8.2 84 33-119 4-91 (97)
117 4f02_A Polyadenylate-binding p 99.8 5.7E-19 1.9E-23 120.7 12.2 84 35-118 13-96 (213)
118 1uaw_A Mouse-musashi-1; RNP-ty 99.8 5.1E-20 1.7E-24 106.7 5.7 76 38-114 1-76 (77)
119 2ki2_A SS-DNA binding protein 99.8 1.6E-20 5.5E-25 112.0 3.6 82 38-120 2-83 (90)
120 2jvr_A Nucleolar protein 3; RN 99.8 2.6E-19 8.8E-24 110.9 9.1 82 34-119 25-107 (111)
121 2e44_A Insulin-like growth fac 99.8 4.7E-19 1.6E-23 106.8 10.0 83 33-119 11-94 (96)
122 2yh0_A Splicing factor U2AF 65 99.8 3E-18 1E-22 115.1 14.8 86 34-119 111-196 (198)
123 2dnn_A RNA-binding protein 12; 99.8 4.9E-19 1.7E-23 109.4 9.9 81 34-117 13-93 (109)
124 2hvz_A Splicing factor, argini 99.8 3.4E-19 1.2E-23 108.4 8.9 79 38-121 1-79 (101)
125 3q2s_C Cleavage and polyadenyl 99.8 2.2E-19 7.4E-24 124.3 8.9 81 36-116 67-149 (229)
126 2hgl_A HNRPF protein, heteroge 99.8 2.4E-19 8.2E-24 114.8 8.5 84 32-117 39-125 (136)
127 2la4_A Nuclear and cytoplasmic 99.8 4.6E-19 1.6E-23 107.8 9.1 79 33-117 23-101 (101)
128 2lcw_A RNA-binding protein FUS 99.7 4.7E-21 1.6E-25 119.5 0.0 89 34-122 4-100 (116)
129 1x5p_A Negative elongation fac 99.8 5.9E-18 2E-22 102.2 13.7 83 32-122 10-92 (97)
130 2wbr_A GW182, gawky, LD47780P; 99.8 1.2E-18 4.2E-23 102.7 10.3 75 35-115 5-79 (89)
131 2ytc_A PRE-mRNA-splicing facto 99.8 1.9E-18 6.4E-23 101.9 11.0 77 33-115 8-85 (85)
132 3pgw_S U1-70K; protein-RNA com 99.8 2.3E-18 7.8E-23 128.9 14.0 86 34-119 99-184 (437)
133 2lmi_A GRSF-1, G-rich sequence 99.8 9E-20 3.1E-24 112.3 5.3 86 31-118 5-93 (107)
134 3md3_A Nuclear and cytoplasmic 99.8 3.6E-18 1.2E-22 111.6 13.2 84 33-116 83-166 (166)
135 2e5g_A U6 snRNA-specific termi 99.8 3.3E-18 1.1E-22 102.8 11.9 82 35-122 6-87 (94)
136 2cqh_A IGF-II mRNA-binding pro 99.8 1.2E-18 4.1E-23 104.5 9.7 80 35-121 6-87 (93)
137 3lqv_A PRE-mRNA branch site pr 99.8 1.1E-18 3.9E-23 108.4 9.8 82 35-119 6-87 (115)
138 2xs2_A Deleted in azoospermia- 99.8 3.5E-19 1.2E-23 108.6 6.9 85 33-120 5-89 (102)
139 1fxl_A Paraneoplastic encephal 99.8 4E-18 1.4E-22 111.4 12.2 83 37-119 2-84 (167)
140 1b7f_A Protein (SXL-lethal pro 99.8 2.4E-18 8.4E-23 112.7 11.2 84 36-119 2-85 (168)
141 2kvi_A Nuclear polyadenylated 99.8 7.1E-19 2.4E-23 106.2 7.9 82 33-122 6-88 (96)
142 2krb_A Eukaryotic translation 99.8 3.3E-19 1.1E-23 104.4 6.2 72 38-111 2-80 (81)
143 2i2y_A Fusion protein consists 99.8 1.8E-18 6.1E-23 112.3 10.2 82 32-118 68-149 (150)
144 1iqt_A AUF1, heterogeneous nuc 99.8 2E-19 7E-24 103.7 4.7 75 39-114 1-75 (75)
145 1x4f_A Matrin 3; structural ge 99.8 2E-18 6.9E-23 106.9 9.5 82 33-120 21-105 (112)
146 1sjr_A Polypyrimidine tract-bi 99.8 3.8E-18 1.3E-22 111.9 11.2 82 34-119 43-126 (164)
147 2qfj_A FBP-interacting repress 99.8 4.4E-18 1.5E-22 115.7 12.0 88 35-122 123-210 (216)
148 3egn_A RNA-binding protein 40; 99.8 3.3E-19 1.1E-23 114.9 5.8 88 34-122 42-135 (143)
149 1l3k_A Heterogeneous nuclear r 99.8 5.1E-18 1.8E-22 113.8 11.8 89 32-121 8-96 (196)
150 1l3k_A Heterogeneous nuclear r 99.8 5.9E-18 2E-22 113.5 12.0 90 34-124 101-190 (196)
151 2hgn_A Heterogeneous nuclear r 99.8 2.2E-19 7.6E-24 115.4 4.1 86 33-121 42-127 (139)
152 2g4b_A Splicing factor U2AF 65 99.8 1.1E-17 3.8E-22 110.0 11.6 81 35-115 92-172 (172)
153 3beg_B Splicing factor, argini 99.8 3E-18 1E-22 106.8 8.2 79 35-120 14-97 (115)
154 2diu_A KIAA0430 protein; struc 99.8 1.6E-17 5.4E-22 99.0 10.5 79 35-123 6-90 (96)
155 3zzy_A Polypyrimidine tract-bi 99.8 2.6E-17 9E-22 104.2 12.3 81 34-119 25-108 (130)
156 1wg1_A KIAA1579 protein, homol 99.8 1.8E-17 6.2E-22 98.4 10.9 78 35-119 3-80 (88)
157 2hgm_A HNRPF protein, heteroge 99.8 2.9E-18 1E-22 108.3 7.8 82 33-117 38-121 (126)
158 2e5i_A Heterogeneous nuclear r 99.7 7.6E-17 2.6E-21 101.5 13.2 79 35-119 23-104 (124)
159 2dha_A FLJ20171 protein; RRM d 99.7 4.6E-18 1.6E-22 107.1 7.2 81 35-117 21-105 (123)
160 3md3_A Nuclear and cytoplasmic 99.7 2.7E-17 9.2E-22 107.3 11.2 82 38-120 1-82 (166)
161 1whx_A Hypothetical protein ri 99.7 8.2E-18 2.8E-22 104.1 8.1 79 34-118 7-85 (111)
162 2j8a_A Histone-lysine N-methyl 99.7 9E-18 3.1E-22 105.4 8.3 78 38-115 3-94 (136)
163 2cq2_A Hypothetical protein LO 99.7 2.3E-17 7.8E-22 102.3 9.7 81 33-119 21-108 (114)
164 2cjk_A Nuclear polyadenylated 99.7 6.2E-18 2.1E-22 110.8 6.9 82 36-118 86-167 (167)
165 4f02_A Polyadenylate-binding p 99.7 3.5E-17 1.2E-21 111.7 10.7 82 36-119 102-183 (213)
166 3d2w_A TAR DNA-binding protein 99.7 3.9E-17 1.3E-21 97.3 9.6 78 33-119 7-86 (89)
167 1b7f_A Protein (SXL-lethal pro 99.7 6.4E-17 2.2E-21 105.9 11.4 81 34-114 86-168 (168)
168 2bz2_A Negative elongation fac 99.7 3E-17 1E-21 103.1 8.9 80 33-120 35-114 (121)
169 2dnl_A Cytoplasmic polyadenyla 99.7 7.4E-17 2.5E-21 100.2 10.6 79 34-115 5-86 (114)
170 3tyt_A Heterogeneous nuclear r 99.7 5.7E-17 2E-21 110.4 10.9 79 35-118 2-81 (205)
171 2qfj_A FBP-interacting repress 99.7 3.6E-17 1.2E-21 111.2 9.9 84 35-118 26-109 (216)
172 1wf0_A TDP-43, TAR DNA-binding 99.7 3.7E-17 1.3E-21 97.0 8.0 80 35-121 3-82 (88)
173 1fje_B Nucleolin RBD12, protei 99.7 1.1E-16 3.8E-21 105.7 11.0 81 33-118 95-175 (175)
174 1fxl_A Paraneoplastic encephal 99.7 9.9E-17 3.4E-21 104.7 10.5 80 35-114 86-167 (167)
175 3pgw_A U1-A; protein-RNA compl 99.7 1.5E-16 5.1E-21 112.5 11.8 85 32-119 4-92 (282)
176 2hzc_A Splicing factor U2AF 65 99.7 9.2E-17 3.1E-21 94.9 8.9 72 35-113 4-86 (87)
177 3nmr_A Cugbp ELAV-like family 99.7 1.2E-16 4.1E-21 105.2 9.8 81 34-115 92-175 (175)
178 3nmr_A Cugbp ELAV-like family 99.7 1.1E-16 3.8E-21 105.3 9.5 84 36-119 2-90 (175)
179 2cjk_A Nuclear polyadenylated 99.7 1.2E-16 4E-21 104.7 8.5 80 36-117 2-81 (167)
180 2adc_A Polypyrimidine tract-bi 99.7 1.5E-16 5.1E-21 109.7 9.2 81 32-117 29-110 (229)
181 2ghp_A U4/U6 snRNA-associated 99.7 2.3E-16 7.9E-21 112.0 10.3 85 33-118 206-292 (292)
182 2pe8_A Splicing factor 45; RRM 99.7 8.9E-16 3E-20 94.1 11.4 82 35-116 6-93 (105)
183 2voo_A Lupus LA protein; RNA-b 99.7 4.8E-16 1.6E-20 104.9 11.1 79 36-116 108-186 (193)
184 3smz_A Protein raver-1, ribonu 99.7 8.6E-16 3E-20 108.6 12.5 85 36-120 94-178 (284)
185 3smz_A Protein raver-1, ribonu 99.7 5.5E-16 1.9E-20 109.7 11.4 87 33-120 180-267 (284)
186 3pgw_A U1-A; protein-RNA compl 99.7 1.8E-15 6.2E-20 106.9 13.7 76 35-115 205-281 (282)
187 3u1l_A PRE-mRNA-splicing facto 99.7 3.3E-16 1.1E-20 108.6 8.2 83 33-121 130-233 (240)
188 2dit_A HIV TAT specific factor 99.6 9.5E-15 3.3E-19 90.3 13.0 84 34-121 12-106 (112)
189 1fje_B Nucleolin RBD12, protei 99.6 1.3E-16 4.4E-21 105.3 4.3 86 32-119 8-93 (175)
190 3sde_A Paraspeckle component 1 99.6 4.5E-15 1.5E-19 104.1 11.1 82 30-117 15-96 (261)
191 1qm9_A Polypyrimidine tract-bi 99.6 9.8E-16 3.3E-20 103.1 6.9 77 37-118 3-80 (198)
192 1qm9_A Polypyrimidine tract-bi 99.6 6.4E-15 2.2E-19 99.0 10.3 78 35-117 118-197 (198)
193 2adc_A Polypyrimidine tract-bi 99.6 1.1E-14 3.6E-19 100.4 11.2 78 35-117 149-228 (229)
194 2ghp_A U4/U6 snRNA-associated 99.6 5.9E-15 2E-19 104.7 9.5 84 36-120 116-200 (292)
195 3sde_A Paraspeckle component 1 99.6 1.3E-14 4.3E-19 101.9 10.5 83 36-119 95-181 (261)
196 3tyt_A Heterogeneous nuclear r 99.6 6E-15 2E-19 100.3 7.6 78 35-114 121-204 (205)
197 3v4m_A Splicing factor U2AF 65 99.6 3E-14 1E-18 87.2 9.5 82 35-116 3-96 (105)
198 1jmt_A Splicing factor U2AF 35 99.6 3.4E-15 1.2E-19 91.3 4.5 72 42-114 20-103 (104)
199 2g4b_A Splicing factor U2AF 65 99.5 6E-14 2.1E-18 92.0 10.3 77 36-119 3-90 (172)
200 3ue2_A Poly(U)-binding-splicin 99.5 8.2E-14 2.8E-18 86.9 9.9 81 36-116 19-108 (118)
201 2yh0_A Splicing factor U2AF 65 99.5 1.3E-13 4.6E-18 92.3 11.5 77 36-119 3-90 (198)
202 2d9o_A DNAJ (HSP40) homolog, s 99.5 6.8E-13 2.3E-17 80.4 12.0 68 47-121 27-94 (100)
203 3tht_A Alkylated DNA repair pr 99.5 2.7E-13 9.2E-18 98.5 9.1 77 33-115 14-97 (345)
204 3s6e_A RNA-binding protein 39; 99.4 6E-12 2.1E-16 78.0 9.9 77 35-115 5-91 (114)
205 1owx_A Lupus LA protein, SS-B, 99.3 2.9E-11 9.9E-16 75.4 8.6 77 32-114 13-93 (121)
206 2dnr_A Synaptojanin-1; RRM dom 99.3 3E-11 1E-15 71.2 8.2 74 35-117 5-86 (91)
207 1ufw_A Synaptojanin 2; RNP dom 99.1 7.3E-10 2.5E-14 65.6 7.0 73 35-116 13-94 (95)
208 3dxb_A Thioredoxin N-terminall 99.1 7.2E-10 2.5E-14 75.8 8.1 67 49-115 141-211 (222)
209 2l9w_A U4/U6 snRNA-associated- 98.9 4E-08 1.4E-12 59.5 9.7 74 34-113 18-96 (117)
210 2dhx_A Poly (ADP-ribose) polym 98.0 0.0002 6.7E-09 42.9 10.7 76 35-119 6-86 (104)
211 1uw4_A UPF3X; nonsense mediate 98.0 7.3E-05 2.5E-09 44.0 8.2 67 38-104 2-70 (91)
212 1wey_A Calcipressin 1; structu 98.0 0.00012 4.3E-09 43.9 9.2 76 37-118 5-85 (104)
213 1whv_A Poly(A)-specific ribonu 97.9 7.5E-05 2.6E-09 44.3 7.3 58 33-99 12-69 (100)
214 3ctr_A Poly(A)-specific ribonu 97.5 0.0002 6.7E-09 42.6 5.0 55 37-100 6-60 (101)
215 2l08_A Regulator of nonsense t 97.4 0.00037 1.3E-08 41.3 5.1 70 35-104 7-78 (97)
216 1wwh_A Nucleoporin 35, nucleop 97.3 0.002 6.7E-08 39.7 7.8 74 33-114 20-94 (119)
217 3pq1_A Poly(A) RNA polymerase; 96.4 0.0016 5.3E-08 49.1 2.7 56 37-98 53-108 (464)
218 3p3d_A Nucleoporin 53; structu 95.4 0.038 1.3E-06 34.5 5.1 77 38-116 8-98 (132)
219 2kn4_A Immunoglobulin G-bindin 95.1 0.032 1.1E-06 35.4 4.5 34 67-102 3-36 (158)
220 2i2y_A Fusion protein consists 95.1 0.01 3.5E-07 37.5 2.1 40 76-116 10-50 (150)
221 3d45_A Poly(A)-specific ribonu 94.1 0.26 9.1E-06 37.5 8.1 56 36-100 439-494 (507)
222 2g0c_A ATP-dependent RNA helic 84.1 3.6 0.00012 22.4 5.3 68 39-115 2-75 (76)
223 1xn9_A 30S ribosomal protein S 44.2 47 0.0016 19.4 5.5 50 47-97 28-82 (101)
224 4eyt_A Telomerase associated p 41.8 49 0.0017 19.0 8.1 58 35-100 10-67 (129)
225 2v94_A RPS24, 30S ribosomal pr 41.0 55 0.0019 19.3 5.2 48 47-95 37-89 (107)
226 1ywx_A 30S ribosomal protein S 40.9 54 0.0018 19.2 5.3 48 47-95 28-80 (102)
227 3fut_A Dimethyladenosine trans 38.7 34 0.0012 23.6 3.7 34 38-72 111-144 (271)
228 2jya_A AGR_C_3324P, uncharacte 37.0 65 0.0022 19.0 5.3 52 75-134 47-98 (106)
229 3uzu_A Ribosomal RNA small sub 36.9 19 0.00066 24.9 2.2 35 38-72 115-149 (279)
230 1qyr_A KSGA, high level kasuga 32.1 46 0.0016 22.5 3.4 32 39-70 92-123 (252)
231 4bby_A Alkyldihydroxyacetoneph 31.8 56 0.0019 25.6 4.3 56 44-100 350-409 (658)
232 2xzm_P RPS24E; ribosome, trans 30.7 1E+02 0.0035 19.4 5.0 48 47-95 31-83 (149)
233 2g1d_A 30S ribosomal protein S 29.0 51 0.0017 19.2 2.8 47 48-95 30-81 (98)
234 2lju_A Putative oxidoreductase 28.8 94 0.0032 18.4 6.2 51 76-134 56-106 (108)
235 3lpe_A Putative transcription 28.2 61 0.0021 18.3 3.0 36 63-103 39-74 (92)
236 3fry_A Probable copper-exporti 27.9 68 0.0023 16.4 5.1 54 38-98 7-60 (73)
237 3tqs_A Ribosomal RNA small sub 27.9 22 0.00074 24.3 1.2 33 40-72 99-131 (255)
238 3u5c_Y RP50, 40S ribosomal pro 26.5 1.2E+02 0.004 18.8 4.6 48 47-95 33-85 (135)
239 3ftd_A Dimethyladenosine trans 26.0 45 0.0015 22.5 2.5 31 39-69 97-127 (249)
240 1i4w_A Mitochondrial replicati 25.9 46 0.0016 24.0 2.6 22 39-60 144-165 (353)
241 2lfv_A Protein DAMX; cell divi 31.3 15 0.00051 21.7 0.0 63 37-103 25-88 (106)
242 4e8u_A Putative uncharacterize 20.4 1.8E+02 0.0062 18.7 7.6 56 39-97 14-81 (172)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.91 E-value=1.2e-23 Score=128.22 Aligned_cols=83 Identities=40% Similarity=0.611 Sum_probs=79.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEe
Q 032702 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEY 113 (135)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 113 (135)
..++.+|||+|||.++++++|+++|..||.|..+.++.++.+|.++|||||+|.+.++|.+|++.|++..+.|+.|+|.+
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34567999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred eCC
Q 032702 114 AKP 116 (135)
Q Consensus 114 a~~ 116 (135)
|+|
T Consensus 96 AkP 98 (99)
T 4fxv_A 96 ARP 98 (99)
T ss_dssp CCB
T ss_pred eeC
Confidence 976
No 2
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.90 E-value=4.8e-22 Score=123.81 Aligned_cols=94 Identities=31% Similarity=0.560 Sum_probs=86.2
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEE
Q 032702 31 RPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIF 110 (135)
Q Consensus 31 ~~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~ 110 (135)
.....+.++|||+|||.++++++|+++|..||.|..+.++.++.++..+|||||+|.+.++|++|+..|++..+.|+.|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (115)
T 2dgo_A 9 KKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 88 (115)
T ss_dssp CCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34556778999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred EEeeCCCCCCCCCC
Q 032702 111 VEYAKPRQPPTLPS 124 (135)
Q Consensus 111 v~~a~~~~~~~~~~ 124 (135)
|.+++++.......
T Consensus 89 V~~a~~~~~~~~~~ 102 (115)
T 2dgo_A 89 TNWATRKPPAPKST 102 (115)
T ss_dssp EEESSCCCCCSCCC
T ss_pred EEEccCCCCCCccc
Confidence 99999887765443
No 3
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.90 E-value=3.5e-22 Score=124.50 Aligned_cols=92 Identities=28% Similarity=0.439 Sum_probs=84.6
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEE
Q 032702 31 RPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIF 110 (135)
Q Consensus 31 ~~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~ 110 (135)
.....+.++|||+|||.++++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|++|++.|++..+.|+.|+
T Consensus 19 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 98 (115)
T 2cpz_A 19 QKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLK 98 (115)
T ss_dssp CCCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CcCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 34455678999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred EEeeCCCCCCCC
Q 032702 111 VEYAKPRQPPTL 122 (135)
Q Consensus 111 v~~a~~~~~~~~ 122 (135)
|.+++++.....
T Consensus 99 V~~a~~~~~~~~ 110 (115)
T 2cpz_A 99 VQLKRSKNDSKS 110 (115)
T ss_dssp EECCCCSCCCCC
T ss_pred EEEcCCCCcCCC
Confidence 999998876543
No 4
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=1e-21 Score=120.08 Aligned_cols=90 Identities=31% Similarity=0.551 Sum_probs=83.8
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEE
Q 032702 32 PQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFV 111 (135)
Q Consensus 32 ~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 111 (135)
....+..+|||+|||.++++++|+++|..||.|..+.++.++.++.++|+|||+|.+.++|.+|+..|++..+.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (103)
T 2cq0_A 10 RRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNV 89 (103)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 34566789999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EeeCCCCCCC
Q 032702 112 EYAKPRQPPT 121 (135)
Q Consensus 112 ~~a~~~~~~~ 121 (135)
.+++++....
T Consensus 90 ~~a~~~~~~~ 99 (103)
T 2cq0_A 90 EWAKPSTNSG 99 (103)
T ss_dssp EESSCCCCSC
T ss_pred EECCCCCCCC
Confidence 9998877644
No 5
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=5.9e-22 Score=121.50 Aligned_cols=91 Identities=29% Similarity=0.413 Sum_probs=84.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEE
Q 032702 32 PQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFV 111 (135)
Q Consensus 32 ~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 111 (135)
....+..+|||+|||.++++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|++|+..|++..+.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 34566789999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EeeCCCCCCCC
Q 032702 112 EYAKPRQPPTL 122 (135)
Q Consensus 112 ~~a~~~~~~~~ 122 (135)
.++.++.....
T Consensus 90 ~~a~~~~~~~~ 100 (105)
T 1x5u_A 90 NKASAHNKNLS 100 (105)
T ss_dssp EETTTTSCCCC
T ss_pred EECCCCCcCCC
Confidence 99988776443
No 6
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.89 E-value=1.2e-21 Score=119.17 Aligned_cols=88 Identities=28% Similarity=0.442 Sum_probs=81.7
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEE
Q 032702 31 RPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIF 110 (135)
Q Consensus 31 ~~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~ 110 (135)
.....+..+|||+|||.++++++|+++|..||.|..+.++.++ ++.++|+|||+|.+.++|.+|+..|++..+.|+.|+
T Consensus 11 ~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 89 (100)
T 2do4_A 11 YSTSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIK 89 (100)
T ss_dssp CSSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 3445667899999999999999999999999999999999996 899999999999999999999999999999999999
Q ss_pred EEeeCCCCC
Q 032702 111 VEYAKPRQP 119 (135)
Q Consensus 111 v~~a~~~~~ 119 (135)
|.+++++..
T Consensus 90 v~~a~~~~~ 98 (100)
T 2do4_A 90 VAISNSGPS 98 (100)
T ss_dssp EEECCCCSC
T ss_pred EEECCCCCC
Confidence 999988765
No 7
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.88 E-value=5.8e-22 Score=122.80 Aligned_cols=85 Identities=18% Similarity=0.275 Sum_probs=80.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEee
Q 032702 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYA 114 (135)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 114 (135)
.+..+|||+|||+++++++|+++|.+||.|.++.++.++.+++++|||||+|.+.++|++|++.||+..+.|+.|+|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 032702 115 KPRQP 119 (135)
Q Consensus 115 ~~~~~ 119 (135)
.....
T Consensus 84 ~~~~~ 88 (110)
T 3s8s_A 84 IKGQQ 88 (110)
T ss_dssp STTHH
T ss_pred CCCcH
Confidence 76544
No 8
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.88 E-value=1.6e-21 Score=120.63 Aligned_cols=91 Identities=27% Similarity=0.454 Sum_probs=84.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhC------CceeC
Q 032702 32 PQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD------GKFLD 105 (135)
Q Consensus 32 ~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~------~~~~~ 105 (135)
....+..+|||+|||+++++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|.+|+..|+ +..+.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 10 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred CcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 345667899999999999999999999999999999999998889999999999999999999999999 99999
Q ss_pred CeEEEEEeeCCCCCCCC
Q 032702 106 GWVIFVEYAKPRQPPTL 122 (135)
Q Consensus 106 g~~l~v~~a~~~~~~~~ 122 (135)
|+.|+|.++.++.....
T Consensus 90 g~~l~v~~a~~~~~~~~ 106 (111)
T 1x4h_A 90 GRQLKVDLAVTRDEAAS 106 (111)
T ss_dssp SCEEEEECCCCCCCCCC
T ss_pred CEEEEEEECCCCccCCC
Confidence 99999999998876554
No 9
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.88 E-value=1.2e-21 Score=119.02 Aligned_cols=90 Identities=24% Similarity=0.465 Sum_probs=83.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEE
Q 032702 32 PQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFV 111 (135)
Q Consensus 32 ~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 111 (135)
....+.++|||+|||.++++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|++|+. +++..+.|+.|+|
T Consensus 5 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V 83 (99)
T 2dgs_A 5 SSGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEV 83 (99)
T ss_dssp CCCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEE
Confidence 344667899999999999999999999999999999999998889999999999999999999999 9999999999999
Q ss_pred EeeCCCCCCCC
Q 032702 112 EYAKPRQPPTL 122 (135)
Q Consensus 112 ~~a~~~~~~~~ 122 (135)
.+++++.....
T Consensus 84 ~~a~~~~~~~~ 94 (99)
T 2dgs_A 84 KRAEPRDSKSS 94 (99)
T ss_dssp EECCCCCCCCC
T ss_pred EECCCCcccCC
Confidence 99998876543
No 10
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.88 E-value=1.3e-21 Score=118.82 Aligned_cols=89 Identities=28% Similarity=0.405 Sum_probs=83.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEe
Q 032702 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEY 113 (135)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 113 (135)
..+..+|||+|||+++++++|+++|..||.|..+.++.++.++.++|+|||+|.+.++|.+|+..|++..+.|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred eCCCCCCCC
Q 032702 114 AKPRQPPTL 122 (135)
Q Consensus 114 a~~~~~~~~ 122 (135)
++++.....
T Consensus 85 a~~~~~~~~ 93 (99)
T 1whw_A 85 STIKKEASQ 93 (99)
T ss_dssp CCCCSTTCC
T ss_pred cCCCccccc
Confidence 998877543
No 11
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.88 E-value=1.3e-21 Score=122.37 Aligned_cols=84 Identities=32% Similarity=0.485 Sum_probs=78.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEE
Q 032702 32 PQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFV 111 (135)
Q Consensus 32 ~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 111 (135)
....+.++|||+|||+++++++|+++|..||.|..+.++.++.++.++|+|||+|.+.++|++|++.|++..+.|+.|+|
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 114 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKV 114 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34566789999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred EeeC
Q 032702 112 EYAK 115 (135)
Q Consensus 112 ~~a~ 115 (135)
++++
T Consensus 115 ~~ak 118 (118)
T 2khc_A 115 QLKK 118 (118)
T ss_dssp EEC-
T ss_pred EecC
Confidence 9975
No 12
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.88 E-value=8.4e-22 Score=116.85 Aligned_cols=84 Identities=32% Similarity=0.558 Sum_probs=76.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEee
Q 032702 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYA 114 (135)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 114 (135)
.+..+|||+|||.++++++|+++|..||.|..+.++.++.++.++|+|||+|.+.++|+.|+..|++..+.|+.|+|.++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 45679999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred CCCC
Q 032702 115 KPRQ 118 (135)
Q Consensus 115 ~~~~ 118 (135)
++++
T Consensus 84 ~~kp 87 (87)
T 3bs9_A 84 TRKP 87 (87)
T ss_dssp C---
T ss_pred CCCC
Confidence 8763
No 13
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.88 E-value=1.3e-21 Score=115.05 Aligned_cols=82 Identities=30% Similarity=0.587 Sum_probs=78.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEeeCC
Q 032702 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKP 116 (135)
Q Consensus 37 ~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~ 116 (135)
+.+|||+|||.++++++|+++|..||.|..+.++.++.++.++|+|||+|.+.++|++|+..|++..+.|+.|+|.++++
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 35899999999999999999999999999999999988999999999999999999999999999999999999999988
Q ss_pred CC
Q 032702 117 RQ 118 (135)
Q Consensus 117 ~~ 118 (135)
++
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 14
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.88 E-value=1.6e-21 Score=119.86 Aligned_cols=91 Identities=25% Similarity=0.522 Sum_probs=83.9
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeec-CCCCCcccEEEEEeCCHHHHHHHHHhh-CCceeCCeE
Q 032702 31 RPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKH-RESGYSKGFGFVKYATLEAAGKAIEGM-DGKFLDGWV 108 (135)
Q Consensus 31 ~~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~g~afv~f~~~~~a~~a~~~l-~~~~~~g~~ 108 (135)
.+...+.++|||+|||.++++++|+++|..||.|..+.++.+ +.++.++|+|||+|.+.++|.+|+..| ++..+.|+.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~ 88 (107)
T 2cph_A 9 VPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRR 88 (107)
T ss_dssp SCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCB
T ss_pred cccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCE
Confidence 345567789999999999999999999999999999999988 678999999999999999999999999 999999999
Q ss_pred EEEEeeCCCCCCC
Q 032702 109 IFVEYAKPRQPPT 121 (135)
Q Consensus 109 l~v~~a~~~~~~~ 121 (135)
|+|.+++++....
T Consensus 89 l~v~~a~~~~~~~ 101 (107)
T 2cph_A 89 LVLEWADSEVTVQ 101 (107)
T ss_dssp CEEEECCCCCCCC
T ss_pred EEEEeCCCCCCCC
Confidence 9999999887654
No 15
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=1.5e-21 Score=117.59 Aligned_cols=88 Identities=30% Similarity=0.501 Sum_probs=82.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEee
Q 032702 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYA 114 (135)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 114 (135)
.+.++|||+|||.++++++|+++|..||.|..+.++.++.++.++|+|||+|.+.++|.+|+..|++..+.|+.|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 45679999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred CCCCCCCC
Q 032702 115 KPRQPPTL 122 (135)
Q Consensus 115 ~~~~~~~~ 122 (135)
.++..+..
T Consensus 83 ~~~~~~~~ 90 (95)
T 2dnz_A 83 TERLDGGS 90 (95)
T ss_dssp SCCCCCCC
T ss_pred ccccCCCC
Confidence 98877543
No 16
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=1.9e-21 Score=117.13 Aligned_cols=85 Identities=35% Similarity=0.504 Sum_probs=80.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEE
Q 032702 32 PQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFV 111 (135)
Q Consensus 32 ~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 111 (135)
....+..+|||+|||.++++++|+++|..||.|..+.++.++.++.++|+|||+|.+.++|.+|+..|++..+.|+.|+|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 89 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 44566789999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred EeeCC
Q 032702 112 EYAKP 116 (135)
Q Consensus 112 ~~a~~ 116 (135)
+++++
T Consensus 90 ~~a~~ 94 (95)
T 2cqc_A 90 SGPSS 94 (95)
T ss_dssp ECCSC
T ss_pred EecCC
Confidence 99875
No 17
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=1e-21 Score=119.83 Aligned_cols=90 Identities=31% Similarity=0.476 Sum_probs=83.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEE
Q 032702 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVE 112 (135)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 112 (135)
...+.++|||+|||.++++++|+++|..||.|..+.++.++.++..+|+|||+|.+.++|++|++.|++..+.|+.|+|.
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 87 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 34567899999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred eeCCCCCCCC
Q 032702 113 YAKPRQPPTL 122 (135)
Q Consensus 113 ~a~~~~~~~~ 122 (135)
+++++.....
T Consensus 88 ~a~~~~~~~~ 97 (102)
T 2cqb_A 88 LAKPMRIKES 97 (102)
T ss_dssp ECCCCCCCCC
T ss_pred eCCCCCCCCC
Confidence 9988876543
No 18
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.88 E-value=4.1e-21 Score=123.26 Aligned_cols=92 Identities=28% Similarity=0.434 Sum_probs=85.1
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEE
Q 032702 31 RPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIF 110 (135)
Q Consensus 31 ~~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~ 110 (135)
.+.....++|||+|||.++++++|+++|..||.|..+.++.++.++.++|+|||+|.+.++|.+|++.|++..+.|+.|+
T Consensus 36 ~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 115 (139)
T 1u6f_A 36 NPEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLK 115 (139)
T ss_dssp SCCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 34556678999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred EEeeCCCCCCCC
Q 032702 111 VEYAKPRQPPTL 122 (135)
Q Consensus 111 v~~a~~~~~~~~ 122 (135)
|.+++++..+..
T Consensus 116 v~~a~~~~~~~~ 127 (139)
T 1u6f_A 116 VALAASGHQRPG 127 (139)
T ss_dssp EEESSCCCCCCC
T ss_pred EEECCCCCCCCC
Confidence 999998876544
No 19
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.88 E-value=8.7e-22 Score=120.41 Aligned_cols=90 Identities=29% Similarity=0.440 Sum_probs=83.3
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEE
Q 032702 32 PQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFV 111 (135)
Q Consensus 32 ~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 111 (135)
+...+..+|||+|||.++++++|+++|..||.|..+.++.++.++.++|+|||+|.+.++|++|+..|++..+.|+.|+|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2dnm_A 8 PDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRV 87 (103)
T ss_dssp SCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 34566789999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred EeeCCCCCCC
Q 032702 112 EYAKPRQPPT 121 (135)
Q Consensus 112 ~~a~~~~~~~ 121 (135)
.++++.....
T Consensus 88 ~~a~~~~~~~ 97 (103)
T 2dnm_A 88 QVARYGRRDL 97 (103)
T ss_dssp EECSSCCSCC
T ss_pred EECCcCCCCC
Confidence 9998766543
No 20
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.88 E-value=2.7e-21 Score=118.17 Aligned_cols=89 Identities=34% Similarity=0.562 Sum_probs=82.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEE
Q 032702 32 PQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFV 111 (135)
Q Consensus 32 ~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 111 (135)
....+.++|||+|||+++++++|+++|..||.|..+.+..+ ++..+++|||+|.+.++|.+|+..|++..+.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 87 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 44567789999999999999999999999999999999887 7889999999999999999999999999999999999
Q ss_pred EeeCCCCCCCC
Q 032702 112 EYAKPRQPPTL 122 (135)
Q Consensus 112 ~~a~~~~~~~~ 122 (135)
.+++++..+..
T Consensus 88 ~~a~~~~~~~~ 98 (103)
T 2d9p_A 88 ALAQRKEERQS 98 (103)
T ss_dssp EECSSCCCCCC
T ss_pred EEecccccCCC
Confidence 99998887654
No 21
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.88 E-value=1.4e-22 Score=121.64 Aligned_cols=84 Identities=21% Similarity=0.462 Sum_probs=77.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccC-CeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhC-CceeCCeEEEEEee
Q 032702 37 STNLFVSGLSKRTTDETLRDTFSAFG-EVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD-GKFLDGWVIFVEYA 114 (135)
Q Consensus 37 ~~~v~v~nlp~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~-~~~~~g~~l~v~~a 114 (135)
+.+|||+|||+++++++|+++|..|| .|..+.++.++.++.++|||||+|.+.++|.+|++.++ +..+.|+.|+|++|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 35899999999999999999999999 89999999998999999999999999999999999875 45799999999999
Q ss_pred CCCCCC
Q 032702 115 KPRQPP 120 (135)
Q Consensus 115 ~~~~~~ 120 (135)
.+++..
T Consensus 81 ~~~~~~ 86 (91)
T 2lxi_A 81 DPKPKI 86 (91)
T ss_dssp CSCCCC
T ss_pred CCCCCC
Confidence 887654
No 22
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=2.4e-21 Score=116.52 Aligned_cols=83 Identities=29% Similarity=0.434 Sum_probs=78.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEE
Q 032702 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVE 112 (135)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 112 (135)
...+.++|||+|||.++++++|+++|..||.|..+.++.++.++.++|+|||+|.+.++|.+|++.|++..+.|+.|+|+
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 91 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKAS 91 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 34567899999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred eeC
Q 032702 113 YAK 115 (135)
Q Consensus 113 ~a~ 115 (135)
+|+
T Consensus 92 ~ak 94 (94)
T 2e5h_A 92 IAI 94 (94)
T ss_dssp ECC
T ss_pred ecC
Confidence 985
No 23
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=6.7e-21 Score=118.81 Aligned_cols=90 Identities=33% Similarity=0.539 Sum_probs=82.2
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEE
Q 032702 31 RPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIF 110 (135)
Q Consensus 31 ~~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~ 110 (135)
...+.+.++|||+|||.++++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|++|+..+++ .+.|+.|+
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~ 89 (116)
T 2cqd_A 11 SQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKAN 89 (116)
T ss_dssp CCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECE
T ss_pred CcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEE
Confidence 34556778999999999999999999999999999999999988899999999999999999999999998 89999999
Q ss_pred EEeeCCCCCCC
Q 032702 111 VEYAKPRQPPT 121 (135)
Q Consensus 111 v~~a~~~~~~~ 121 (135)
|+++.+...+.
T Consensus 90 V~~a~~~~~~~ 100 (116)
T 2cqd_A 90 VNLAYLGAKPR 100 (116)
T ss_dssp EEESTTTCCCC
T ss_pred EEEcccCCCcc
Confidence 99997765443
No 24
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.87 E-value=5.9e-21 Score=116.73 Aligned_cols=88 Identities=20% Similarity=0.422 Sum_probs=81.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEE
Q 032702 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVE 112 (135)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 112 (135)
+..+.++|||+|||.++++++|+++|..|| |..+.++.++.++.++|||||+|.+.++|.+|+ .|++..+.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 88 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVD 88 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEE
Confidence 345578999999999999999999999996 999999999889999999999999999999999 899999999999999
Q ss_pred eeCCCCCCCC
Q 032702 113 YAKPRQPPTL 122 (135)
Q Consensus 113 ~a~~~~~~~~ 122 (135)
++.++.....
T Consensus 89 ~a~~~~~~~~ 98 (103)
T 2dng_A 89 IAEGRKQDKS 98 (103)
T ss_dssp ECCCCCCCCS
T ss_pred EecCCCCCCC
Confidence 9998776543
No 25
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=2.7e-21 Score=120.06 Aligned_cols=91 Identities=29% Similarity=0.394 Sum_probs=83.8
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeE--------EEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCc
Q 032702 31 RPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVV--------HAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGK 102 (135)
Q Consensus 31 ~~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~--------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~ 102 (135)
.....+.++|||+|||.++++++|+++|..||.|. .+.++.++.++..+|+|||+|.+.++|++|+..|++.
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 88 (113)
T 2cpe_A 9 PDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGK 88 (113)
T ss_dssp CCCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTC
T ss_pred cccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCC
Confidence 34556778999999999999999999999999998 6999999889999999999999999999999999999
Q ss_pred eeCCeEEEEEeeCCCCCCC
Q 032702 103 FLDGWVIFVEYAKPRQPPT 121 (135)
Q Consensus 103 ~~~g~~l~v~~a~~~~~~~ 121 (135)
.+.|+.|+|.+++++....
T Consensus 89 ~~~g~~l~V~~a~~~~~~~ 107 (113)
T 2cpe_A 89 DFQGSKLKVSLARKKPPMN 107 (113)
T ss_dssp EETTEECEEECSSCCCCST
T ss_pred ccCCCEEEEEECCCCCCCC
Confidence 9999999999998877653
No 26
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=8.7e-22 Score=120.95 Aligned_cols=87 Identities=33% Similarity=0.610 Sum_probs=81.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEE
Q 032702 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVE 112 (135)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 112 (135)
...+.++|||+|||.++++++|+++|..||.|..+.++.++.++.++|+|||+|.+.++|++|+..|++..+.|+.|+|.
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 44567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred eeCCCCC
Q 032702 113 YAKPRQP 119 (135)
Q Consensus 113 ~a~~~~~ 119 (135)
++.++..
T Consensus 99 ~a~~~~~ 105 (106)
T 1p27_B 99 WCFVRGP 105 (106)
T ss_dssp ESEESSC
T ss_pred eecCCCC
Confidence 9987654
No 27
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.87 E-value=3.3e-21 Score=118.15 Aligned_cols=88 Identities=25% Similarity=0.422 Sum_probs=81.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC---eEE
Q 032702 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDG---WVI 109 (135)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g---~~l 109 (135)
...+.++|||+|||.++++++|+++|..||.|..+.++.+. ++.++|||||+|.+.++|.+|+..|++..+.+ +.|
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l 89 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSL 89 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccE
Confidence 34567899999999999999999999999999999999985 78999999999999999999999999999888 999
Q ss_pred EEEeeCCCCCCC
Q 032702 110 FVEYAKPRQPPT 121 (135)
Q Consensus 110 ~v~~a~~~~~~~ 121 (135)
+|.+++++..+.
T Consensus 90 ~V~~a~~~~~~~ 101 (105)
T 2dnh_A 90 VVKFADTDKESG 101 (105)
T ss_dssp EEEESCSSCCCS
T ss_pred EEEECccCcccC
Confidence 999999887654
No 28
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=4.3e-21 Score=117.53 Aligned_cols=87 Identities=20% Similarity=0.377 Sum_probs=80.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCC-CCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEE
Q 032702 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRES-GYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVE 112 (135)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~-~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 112 (135)
..+.++|||+|||.++++++|+++|..|| |..+.++.++.+ +.++|||||+|.+.++|++|+ .|++..+.|+.|+|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVD 89 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEE
Confidence 35568999999999999999999999999 999999999877 899999999999999999999 899999999999999
Q ss_pred eeCCCCCCCC
Q 032702 113 YAKPRQPPTL 122 (135)
Q Consensus 113 ~a~~~~~~~~ 122 (135)
++.++.....
T Consensus 90 ~a~~~~~~~~ 99 (104)
T 1wi8_A 90 VADQAQDKDS 99 (104)
T ss_dssp ECCCCCCCCC
T ss_pred EccCCCCCCC
Confidence 9998876543
No 29
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=1.5e-21 Score=119.03 Aligned_cols=90 Identities=36% Similarity=0.579 Sum_probs=83.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEE
Q 032702 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVE 112 (135)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 112 (135)
...+..+|||+|||.++++++|+++|..||.|..+.++.++.++.++|+|||+|.+.++|.+|++.|++..+.|+.|+|.
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred eeCCCCCCCC
Q 032702 113 YAKPRQPPTL 122 (135)
Q Consensus 113 ~a~~~~~~~~ 122 (135)
+++++.....
T Consensus 88 ~a~~~~~~~~ 97 (102)
T 1x5s_A 88 QAGKSSDNRS 97 (102)
T ss_dssp EEECCCCCCC
T ss_pred ECCCCCCCCC
Confidence 9988776543
No 30
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.87 E-value=1.8e-21 Score=121.65 Aligned_cols=87 Identities=31% Similarity=0.535 Sum_probs=80.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEe
Q 032702 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEY 113 (135)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 113 (135)
..+..+|||+|||.++++++|+++|..||.|..+.+..+. ++..+|||||+|.+.++|++|+..|++..+.|+.|+|.+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3556799999999999999999999999999999999996 899999999999999999999999999999999999999
Q ss_pred eCCCCCCC
Q 032702 114 AKPRQPPT 121 (135)
Q Consensus 114 a~~~~~~~ 121 (135)
++++....
T Consensus 83 a~~~~~~~ 90 (116)
T 2fy1_A 83 AKKPSFQS 90 (116)
T ss_dssp CCCSSCSS
T ss_pred CCCCCCCC
Confidence 98776543
No 31
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.87 E-value=1.7e-21 Score=118.37 Aligned_cols=85 Identities=29% Similarity=0.416 Sum_probs=79.5
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEE--------EEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCc
Q 032702 31 RPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVH--------AKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGK 102 (135)
Q Consensus 31 ~~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~--------~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~ 102 (135)
.....+.++|||+|||.++++++|+++|..||.|.. +.++.++.++..+|+|||+|.+.++|.+|++.|++.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 7 HHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 345566789999999999999999999999999999 999999889999999999999999999999999999
Q ss_pred eeCCeEEEEEeeC
Q 032702 103 FLDGWVIFVEYAK 115 (135)
Q Consensus 103 ~~~g~~l~v~~a~ 115 (135)
.+.|+.|+|++|+
T Consensus 87 ~~~g~~l~V~~A~ 99 (99)
T 2la6_A 87 EFSGNPIKVSFAT 99 (99)
T ss_dssp BSSSSBCEEEECC
T ss_pred EeCCcEEEEEecC
Confidence 9999999999974
No 32
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.87 E-value=2.1e-21 Score=114.61 Aligned_cols=82 Identities=33% Similarity=0.518 Sum_probs=78.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEe
Q 032702 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEY 113 (135)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 113 (135)
..+.++|||+|||.++++++|+++|..||.|..+.++.++.++..+|+|||+|.+.++|.+|+..|++..+.|+.|+|++
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred eC
Q 032702 114 AK 115 (135)
Q Consensus 114 a~ 115 (135)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 33
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.87 E-value=1.6e-21 Score=120.53 Aligned_cols=89 Identities=25% Similarity=0.494 Sum_probs=82.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEE
Q 032702 32 PQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFV 111 (135)
Q Consensus 32 ~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 111 (135)
....+.++|||+|||.++++++|+++|..||.|..+.++.++.++.++|+|||+|.+.++|..|+..|++..+.|+.|+|
T Consensus 21 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 100 (110)
T 1oo0_B 21 QRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV 100 (110)
T ss_dssp CCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 34566789999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EeeCCCCCC
Q 032702 112 EYAKPRQPP 120 (135)
Q Consensus 112 ~~a~~~~~~ 120 (135)
.++.++..+
T Consensus 101 ~~a~~~~~~ 109 (110)
T 1oo0_B 101 DWCFVKGPK 109 (110)
T ss_dssp EESEESSCC
T ss_pred EEcccCCCC
Confidence 999876653
No 34
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=1.2e-20 Score=115.37 Aligned_cols=89 Identities=21% Similarity=0.358 Sum_probs=80.3
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEE
Q 032702 32 PQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFV 111 (135)
Q Consensus 32 ~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 111 (135)
....+.++|||+|||+++++++|+++|..||.|..+.++.++.+ .+|||||+|.+.++|.+|+..|++..+.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 87 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEE
Confidence 44566789999999999999999999999999999999988533 6899999999999999999999999999999999
Q ss_pred EeeCCCCCCCC
Q 032702 112 EYAKPRQPPTL 122 (135)
Q Consensus 112 ~~a~~~~~~~~ 122 (135)
.+++++.....
T Consensus 88 ~~a~~~~~~~~ 98 (103)
T 2cqi_A 88 NWATTPSSQKS 98 (103)
T ss_dssp EECCCTTCCCC
T ss_pred EECCCCccccc
Confidence 99998776544
No 35
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.87 E-value=1.6e-21 Score=119.69 Aligned_cols=90 Identities=22% Similarity=0.354 Sum_probs=83.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCcee---CCeE
Q 032702 32 PQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFL---DGWV 108 (135)
Q Consensus 32 ~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~---~g~~ 108 (135)
....+..+|||+|||.++++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|.+|+..|++..+ .++.
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce
Confidence 3456678999999999999999999999999999999999988899999999999999999999999999987 8899
Q ss_pred EEEEeeCCCCCCC
Q 032702 109 IFVEYAKPRQPPT 121 (135)
Q Consensus 109 l~v~~a~~~~~~~ 121 (135)
|+|.++.++....
T Consensus 88 l~v~~a~~~~~~~ 100 (106)
T 2dgp_A 88 IQVKPADSESRGG 100 (106)
T ss_dssp CEEEECCCCSCCC
T ss_pred EEEEECCcccccC
Confidence 9999998877644
No 36
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.87 E-value=1.1e-21 Score=124.84 Aligned_cols=88 Identities=35% Similarity=0.569 Sum_probs=82.3
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEE
Q 032702 32 PQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFV 111 (135)
Q Consensus 32 ~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 111 (135)
....+..+|||+|||.++++++|+++|..||.|..+.++.++.++..+|+|||+|.+.++|++|+..|++..+.|+.|+|
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V 120 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 120 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34566789999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred EeeCCCCC
Q 032702 112 EYAKPRQP 119 (135)
Q Consensus 112 ~~a~~~~~ 119 (135)
.++.+++.
T Consensus 121 ~~a~~~~p 128 (129)
T 2kxn_B 121 DFSITKRP 128 (129)
T ss_dssp SCCSSSSC
T ss_pred EEecCCCC
Confidence 99988764
No 37
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.87 E-value=2.4e-21 Score=119.61 Aligned_cols=87 Identities=30% Similarity=0.510 Sum_probs=81.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEE
Q 032702 32 PQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFV 111 (135)
Q Consensus 32 ~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 111 (135)
....+.++|||+|||.++++++|+++|..||.|..+.++.++.++.++|+|||+|.+.++|..|++.|++..+.|+.|+|
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 100 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 100 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34566789999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred EeeCCCC
Q 032702 112 EYAKPRQ 118 (135)
Q Consensus 112 ~~a~~~~ 118 (135)
.+++++.
T Consensus 101 ~~a~~k~ 107 (108)
T 2jrs_A 101 GHVTERT 107 (108)
T ss_dssp ECSCSSC
T ss_pred EEcccCC
Confidence 9998765
No 38
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=1.9e-20 Score=114.38 Aligned_cols=89 Identities=30% Similarity=0.480 Sum_probs=80.4
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEE
Q 032702 31 RPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIF 110 (135)
Q Consensus 31 ~~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~ 110 (135)
.....+.++|||+|||+++++++|+++|..||.|..+.++.+.. .++|+|||+|.+.++|.+|+..|++..+.|+.|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 86 (103)
T 2cq3_A 9 SESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 86 (103)
T ss_dssp SCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34556678999999999999999999999999999999998743 3789999999999999999999999999999999
Q ss_pred EEeeCCCCCCC
Q 032702 111 VEYAKPRQPPT 121 (135)
Q Consensus 111 v~~a~~~~~~~ 121 (135)
|.++.++....
T Consensus 87 v~~a~~~~~~~ 97 (103)
T 2cq3_A 87 VNNATARVMTN 97 (103)
T ss_dssp EEECCSSCCCC
T ss_pred EEEcccCCCCC
Confidence 99998877654
No 39
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.87 E-value=3.4e-21 Score=116.38 Aligned_cols=84 Identities=24% Similarity=0.480 Sum_probs=79.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEeeC
Q 032702 36 PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAK 115 (135)
Q Consensus 36 ~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 115 (135)
+.++|||+|||.++++++|+++|..||.|..+.++.++.++.++|+|||+|.+.++|.+|++.|++..+.|+.|+|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 35799999999999999999999999999999999998889999999999999999999999999999999999999998
Q ss_pred CCCC
Q 032702 116 PRQP 119 (135)
Q Consensus 116 ~~~~ 119 (135)
++..
T Consensus 81 ~~~~ 84 (96)
T 2x1f_A 81 NSDI 84 (96)
T ss_dssp CSSG
T ss_pred CCCC
Confidence 8764
No 40
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.87 E-value=4.1e-21 Score=116.32 Aligned_cols=88 Identities=34% Similarity=0.533 Sum_probs=80.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCC---CCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEE
Q 032702 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRE---SGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFV 111 (135)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~---~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 111 (135)
.+.++|||+|||.++++++|+++|..||.|..+.++.++. ++..+|+|||+|.+.++|++|+..|++..+.|+.|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4567999999999999999999999999999999998865 5588999999999999999999999999999999999
Q ss_pred EeeCCCCCCCC
Q 032702 112 EYAKPRQPPTL 122 (135)
Q Consensus 112 ~~a~~~~~~~~ 122 (135)
.+++++.....
T Consensus 83 ~~a~~~~~~~~ 93 (98)
T 2cpf_A 83 RISERATKPAS 93 (98)
T ss_dssp ECSSCSSCCCC
T ss_pred EEccCCCCCCC
Confidence 99988776543
No 41
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.87 E-value=2.9e-21 Score=119.42 Aligned_cols=92 Identities=29% Similarity=0.444 Sum_probs=77.9
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeE
Q 032702 29 PQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWV 108 (135)
Q Consensus 29 ~~~~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~ 108 (135)
.......+.++|||+|||.++++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|.+|+..+ +..+.|+.
T Consensus 17 ~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~ 95 (109)
T 2rs2_A 17 RGSHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKT 95 (109)
T ss_dssp ---------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEE
T ss_pred cccccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEE
Confidence 33445567789999999999999999999999999999999999888999999999999999999999976 48899999
Q ss_pred EEEEeeCCCCCCC
Q 032702 109 IFVEYAKPRQPPT 121 (135)
Q Consensus 109 l~v~~a~~~~~~~ 121 (135)
|.|.++.++....
T Consensus 96 l~V~~a~~~~~~~ 108 (109)
T 2rs2_A 96 IDPKVAFPRRAQP 108 (109)
T ss_dssp EEEEECCCCCCCC
T ss_pred EEEEEccCCCCCC
Confidence 9999999877643
No 42
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=3.1e-21 Score=116.44 Aligned_cols=87 Identities=34% Similarity=0.651 Sum_probs=81.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEE-EEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEe
Q 032702 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHA-KIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEY 113 (135)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~-~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 113 (135)
.+.++|||+|||.++++++|+++|..||.|..+ .++.++.++.++|+|||+|.+.++|+.|+..|++..+.|+.|+|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 456899999999999999999999999999999 9999888999999999999999999999999999999999999999
Q ss_pred eCCCCCCC
Q 032702 114 AKPRQPPT 121 (135)
Q Consensus 114 a~~~~~~~ 121 (135)
+.++....
T Consensus 83 a~~~~~~~ 90 (96)
T 1x5t_A 83 AFKKDSKG 90 (96)
T ss_dssp SCCCCCCC
T ss_pred ecccCCCC
Confidence 98877643
No 43
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=3e-21 Score=118.16 Aligned_cols=90 Identities=27% Similarity=0.447 Sum_probs=83.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhc-cCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCce-eCCeEEE
Q 032702 33 QAEPSTNLFVSGLSKRTTDETLRDTFSA-FGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKF-LDGWVIF 110 (135)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~-~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-~~g~~l~ 110 (135)
...+.++|||+|||+++++++|+++|.. ||.|..+.++.++ ++.++|||||+|.+.++|.+|+..|++.. +.|+.|+
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~ 83 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVR 83 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEE
Confidence 4456789999999999999999999999 9999999999997 99999999999999999999999999999 9999999
Q ss_pred EEeeCCCCCCCCC
Q 032702 111 VEYAKPRQPPTLP 123 (135)
Q Consensus 111 v~~a~~~~~~~~~ 123 (135)
|.++.++.....+
T Consensus 84 v~~a~~~~~~~~~ 96 (104)
T 2dhg_A 84 LSVAIPKASRVKP 96 (104)
T ss_dssp CCBCCCCCSCCCC
T ss_pred EEEccCCCcCCCC
Confidence 9999887776544
No 44
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=2e-20 Score=114.28 Aligned_cols=90 Identities=30% Similarity=0.531 Sum_probs=81.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEE
Q 032702 32 PQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFV 111 (135)
Q Consensus 32 ~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 111 (135)
....+..+|||+|||+++++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|.+|+. ++..+.|+.|.|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v 87 (103)
T 2cqg_A 10 RAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDC 87 (103)
T ss_dssp CCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEE
T ss_pred CccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEE
Confidence 445667899999999999999999999999999999999998889999999999999999999998 467899999999
Q ss_pred EeeCCCCCCCCC
Q 032702 112 EYAKPRQPPTLP 123 (135)
Q Consensus 112 ~~a~~~~~~~~~ 123 (135)
.++.++.....+
T Consensus 88 ~~a~~~~~~~~~ 99 (103)
T 2cqg_A 88 KLPNSKQSQDSG 99 (103)
T ss_dssp ECCCTTCCCCCS
T ss_pred EecCCCCcCCCC
Confidence 999988775543
No 45
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=3.6e-21 Score=118.02 Aligned_cols=90 Identities=38% Similarity=0.554 Sum_probs=83.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEE
Q 032702 32 PQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFV 111 (135)
Q Consensus 32 ~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 111 (135)
....+.++|||+|||+++++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|.+|+.. ++..+.|+.|.|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V 89 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDP 89 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEE
Confidence 3456678999999999999999999999999999999999988999999999999999999999998 999999999999
Q ss_pred EeeCCCCCCCC
Q 032702 112 EYAKPRQPPTL 122 (135)
Q Consensus 112 ~~a~~~~~~~~ 122 (135)
.++.++.....
T Consensus 90 ~~a~~~~~~~~ 100 (105)
T 2dh8_A 90 KPCTPRGMQPS 100 (105)
T ss_dssp CCSCCSSCCTT
T ss_pred EEccCCCCCCC
Confidence 99998876543
No 46
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.86 E-value=1.5e-21 Score=123.43 Aligned_cols=90 Identities=33% Similarity=0.617 Sum_probs=83.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEE
Q 032702 32 PQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFV 111 (135)
Q Consensus 32 ~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 111 (135)
....+.++|||+|||+++++++|+++|..||.|..+.++.++.++.++|+|||+|.+.++|++|++.|++..+.|+.|+|
T Consensus 17 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 96 (126)
T 3ex7_B 17 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 96 (126)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 34566789999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EeeCCCCCCC
Q 032702 112 EYAKPRQPPT 121 (135)
Q Consensus 112 ~~a~~~~~~~ 121 (135)
.++.++....
T Consensus 97 ~~a~~~~~~~ 106 (126)
T 3ex7_B 97 DWCFVRGPPK 106 (126)
T ss_dssp EESEESSSCC
T ss_pred EEecCCCCCC
Confidence 9998776654
No 47
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.86 E-value=1.1e-21 Score=118.51 Aligned_cols=84 Identities=18% Similarity=0.392 Sum_probs=76.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCC--eEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCc----eeCC
Q 032702 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGE--VVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGK----FLDG 106 (135)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~--i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~----~~~g 106 (135)
....-.+|||+|||+++|+++|+++|.+||. +..+.++.++.++.++|||||+|.+.++|.+|++.|++. .+.|
T Consensus 5 ~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G 84 (95)
T 2lkz_A 5 HHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDG 84 (95)
T ss_dssp SSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETT
T ss_pred cCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECC
Confidence 3455569999999999999999999999995 678999999999999999999999999999999999986 4899
Q ss_pred eEEEEEeeCC
Q 032702 107 WVIFVEYAKP 116 (135)
Q Consensus 107 ~~l~v~~a~~ 116 (135)
+.|.|.+|+.
T Consensus 85 r~i~V~~Aks 94 (95)
T 2lkz_A 85 KTIGVDFAKS 94 (95)
T ss_dssp EEEEEEECCC
T ss_pred EEEEEEEccC
Confidence 9999999975
No 48
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.86 E-value=3e-22 Score=119.76 Aligned_cols=84 Identities=24% Similarity=0.377 Sum_probs=72.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccC--CeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEeeC
Q 032702 38 TNLFVSGLSKRTTDETLRDTFSAFG--EVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAK 115 (135)
Q Consensus 38 ~~v~v~nlp~~~~~~~l~~~f~~~g--~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 115 (135)
.+|||+|||+++++++|+++|..|| .|..+.++.++.+|.++|||||+|.+.++|++|++.|++..+.|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999998899999999999999999999999999999999999999998
Q ss_pred CCCCCC
Q 032702 116 PRQPPT 121 (135)
Q Consensus 116 ~~~~~~ 121 (135)
+.....
T Consensus 82 ~~~~~~ 87 (90)
T 3p5t_L 82 KLEHHH 87 (90)
T ss_dssp ------
T ss_pred CCcccc
Confidence 876643
No 49
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=6.1e-21 Score=118.98 Aligned_cols=89 Identities=28% Similarity=0.499 Sum_probs=82.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEe
Q 032702 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEY 113 (135)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 113 (135)
..+.++|||+|||+++++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|.+|+.. ++..+.|+.|+|.+
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~ 102 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKR 102 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEEC
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEE
Confidence 34558999999999999999999999999999999999988899999999999999999999997 99999999999999
Q ss_pred eCCCCCCCCC
Q 032702 114 AKPRQPPTLP 123 (135)
Q Consensus 114 a~~~~~~~~~ 123 (135)
+.++.....+
T Consensus 103 a~~~~~~~~~ 112 (116)
T 1x4b_A 103 AVAREESGSG 112 (116)
T ss_dssp CSSCCCCCCS
T ss_pred CCCCccCCCC
Confidence 9988775543
No 50
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=4.4e-21 Score=116.42 Aligned_cols=87 Identities=28% Similarity=0.519 Sum_probs=81.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeE-EEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeE----
Q 032702 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVV-HAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWV---- 108 (135)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~-~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~---- 108 (135)
..+..+|||+|||+++++++|+++|..||.|. .+.++.++.++.++|||||+|.+.++|++|+..|++..+.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 35678999999999999999999999999999 9999999889999999999999999999999999999999999
Q ss_pred EEEEeeCCCCCC
Q 032702 109 IFVEYAKPRQPP 120 (135)
Q Consensus 109 l~v~~a~~~~~~ 120 (135)
|+|.++++....
T Consensus 86 l~v~~a~~~~~~ 97 (99)
T 2div_A 86 FKLNYATYSGPS 97 (99)
T ss_dssp CCEEETTCCSSS
T ss_pred EEEeecCCCCCC
Confidence 999999876543
No 51
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=5.8e-20 Score=113.33 Aligned_cols=88 Identities=20% Similarity=0.408 Sum_probs=78.6
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEE
Q 032702 31 RPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIF 110 (135)
Q Consensus 31 ~~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~ 110 (135)
.....+.++|||+|||.++++++|+++|..||.|..+.+..+ +.++++|||+|.+.++|++|++.|++..+.|+.|+
T Consensus 16 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 92 (109)
T 1x4a_A 16 GPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLR 92 (109)
T ss_dssp CCCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 345567789999999999999999999999999999998654 45789999999999999999999999999999999
Q ss_pred EEeeCCCCCCC
Q 032702 111 VEYAKPRQPPT 121 (135)
Q Consensus 111 v~~a~~~~~~~ 121 (135)
|.++++.....
T Consensus 93 V~~a~~~~~~~ 103 (109)
T 1x4a_A 93 VEFPRSGRGTG 103 (109)
T ss_dssp EECCCCCCCCC
T ss_pred EEEcccCCCCC
Confidence 99998876543
No 52
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=2.1e-21 Score=120.79 Aligned_cols=86 Identities=29% Similarity=0.491 Sum_probs=79.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEE
Q 032702 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVE 112 (135)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 112 (135)
.....++|||+|||.++++++|+++|..||.|..+.++.++.++..+|||||+|.+.++|++|+ .|++..+.|+.|+|.
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 99 (114)
T 2cq4_A 21 EERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQ 99 (114)
T ss_dssp THHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEE
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEE
Confidence 3345689999999999999999999999999999999999888999999999999999999999 899999999999999
Q ss_pred eeCCCCC
Q 032702 113 YAKPRQP 119 (135)
Q Consensus 113 ~a~~~~~ 119 (135)
+++++..
T Consensus 100 ~a~~~~~ 106 (114)
T 2cq4_A 100 ASQAEKN 106 (114)
T ss_dssp EHHHHHH
T ss_pred ecCCCcc
Confidence 9976554
No 53
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=7.2e-20 Score=113.68 Aligned_cols=86 Identities=27% Similarity=0.416 Sum_probs=79.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEE
Q 032702 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVE 112 (135)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 112 (135)
...+.++|||+|||.++++++|+++|..||.|..+.++.++ ++..+|+|||+|.+.++|+.|+..|++..+.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 89 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVK 89 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEE
Confidence 34557899999999999999999999999999999999985 68999999999999999999999999999999999999
Q ss_pred eeCCCCC
Q 032702 113 YAKPRQP 119 (135)
Q Consensus 113 ~a~~~~~ 119 (135)
+++....
T Consensus 90 ~a~~~~~ 96 (114)
T 2do0_A 90 MDERALP 96 (114)
T ss_dssp ECSCCCC
T ss_pred EcccCCC
Confidence 9975544
No 54
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.85 E-value=9.5e-21 Score=118.11 Aligned_cols=83 Identities=42% Similarity=0.673 Sum_probs=75.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEeeCC
Q 032702 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKP 116 (135)
Q Consensus 37 ~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~ 116 (135)
..+|||+|||+++++++|+++|..||.|..+.++.+. +.++|||||+|.+.++|++|++.|++..+.|+.|+|.++.+
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 4589999999999999999999999999999999884 34789999999999999999999999999999999999987
Q ss_pred CCCCC
Q 032702 117 RQPPT 121 (135)
Q Consensus 117 ~~~~~ 121 (135)
+..+.
T Consensus 83 ~~~~~ 87 (115)
T 4f25_A 83 RKERE 87 (115)
T ss_dssp CCC--
T ss_pred ccccc
Confidence 76543
No 55
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.85 E-value=9.5e-22 Score=119.78 Aligned_cols=89 Identities=20% Similarity=0.391 Sum_probs=75.4
Q ss_pred CCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecC-CCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 032702 28 PPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHR-ESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDG 106 (135)
Q Consensus 28 ~~~~~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~-~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g 106 (135)
+++.......++|||+|||.++++++|+++|..|| |..+.++.++ .++.++|+|||+|.+.++|.+|+ .|++..+.|
T Consensus 10 ~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g 87 (100)
T 2j76_E 10 HRSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGN 87 (100)
T ss_dssp ----------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTT
T ss_pred CCCcCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECC
Confidence 33445567788999999999999999999999999 9999999987 58999999999999999999999 899999999
Q ss_pred eEEEEEeeCCCC
Q 032702 107 WVIFVEYAKPRQ 118 (135)
Q Consensus 107 ~~l~v~~a~~~~ 118 (135)
+.|+|.+++++.
T Consensus 88 ~~l~V~~a~~~~ 99 (100)
T 2j76_E 88 RRIRVDVADQAQ 99 (100)
T ss_dssp BCCCCEECCCSC
T ss_pred eEEEEEeccCCC
Confidence 999999998764
No 56
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.85 E-value=2.1e-20 Score=122.21 Aligned_cols=89 Identities=25% Similarity=0.329 Sum_probs=83.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEE
Q 032702 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVE 112 (135)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 112 (135)
...+.++|||+|||.++++++|+++|..||.|..+.++.++.++.+++||||+|.+.++|++|+..|++..+.|+.|+|.
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred eeCCCCCCC
Q 032702 113 YAKPRQPPT 121 (135)
Q Consensus 113 ~a~~~~~~~ 121 (135)
++++.....
T Consensus 115 ~a~~~~~~~ 123 (156)
T 1h2v_Z 115 WDAGFKEGR 123 (156)
T ss_dssp EESCCCTTC
T ss_pred ECCCCCCcC
Confidence 998766544
No 57
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.85 E-value=9.8e-21 Score=114.00 Aligned_cols=84 Identities=32% Similarity=0.441 Sum_probs=77.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEE
Q 032702 32 PQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFV 111 (135)
Q Consensus 32 ~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 111 (135)
....+..+|||+|||+++++++|+++|..||.|..+.++.++ ++.++|+|||+|.+.++|.+|+..|++..+.|+.|+|
T Consensus 11 ~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (95)
T 2ywk_A 11 AQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDR-EGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINV 89 (95)
T ss_dssp -CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEE
Confidence 344567899999999999999999999999999999999986 4889999999999999999999999999999999999
Q ss_pred EeeCC
Q 032702 112 EYAKP 116 (135)
Q Consensus 112 ~~a~~ 116 (135)
.+++.
T Consensus 90 ~~a~~ 94 (95)
T 2ywk_A 90 SGPSS 94 (95)
T ss_dssp ECCCC
T ss_pred EEcCC
Confidence 99864
No 58
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.85 E-value=8.9e-21 Score=112.54 Aligned_cols=84 Identities=25% Similarity=0.443 Sum_probs=77.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCC-cccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEee
Q 032702 36 PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGY-SKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYA 114 (135)
Q Consensus 36 ~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~-~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 114 (135)
...+|||+|||.++++++|+++|..||.|..+.++.+..++. .+|+|||+|.+.++|.+|+..|++..+.|+.|+|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 457999999999999999999999999999999998876655 8999999999999999999999999999999999999
Q ss_pred CCCCC
Q 032702 115 KPRQP 119 (135)
Q Consensus 115 ~~~~~ 119 (135)
.+...
T Consensus 83 ~~~~~ 87 (88)
T 4a8x_A 83 LAPWP 87 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87654
No 59
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.85 E-value=1.8e-20 Score=115.19 Aligned_cols=83 Identities=28% Similarity=0.384 Sum_probs=78.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEE
Q 032702 32 PQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFV 111 (135)
Q Consensus 32 ~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 111 (135)
+...+.++|||+|||+.+++++|+++|..||.|..+.++.+. ++.++|+|||+|.+.++|++|+..|++..+.|+.|+|
T Consensus 24 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 102 (107)
T 3ulh_A 24 AGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNI 102 (107)
T ss_dssp CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 345677899999999999999999999999999999999996 8999999999999999999999999999999999999
Q ss_pred EeeC
Q 032702 112 EYAK 115 (135)
Q Consensus 112 ~~a~ 115 (135)
+++.
T Consensus 103 ~~a~ 106 (107)
T 3ulh_A 103 QLVT 106 (107)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9986
No 60
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=8.6e-21 Score=114.91 Aligned_cols=86 Identities=13% Similarity=0.171 Sum_probs=78.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEE
Q 032702 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVE 112 (135)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 112 (135)
......+|||+|||+++++++|+++|..||.|..+.++.++.++.++|+|||+|.+.++|++|+..|++..+.|+.|+|+
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 34456799999999999999999999999999888888888899999999999999999999999999999999999999
Q ss_pred eeCCCC
Q 032702 113 YAKPRQ 118 (135)
Q Consensus 113 ~a~~~~ 118 (135)
++..+.
T Consensus 91 ~a~~~~ 96 (98)
T 2cqp_A 91 LGSGPS 96 (98)
T ss_dssp ESSCSS
T ss_pred EcCCCC
Confidence 987654
No 61
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.85 E-value=4e-21 Score=122.36 Aligned_cols=88 Identities=17% Similarity=0.420 Sum_probs=80.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEE--EEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCc----eeCC
Q 032702 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVH--AKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGK----FLDG 106 (135)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~--~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~----~~~g 106 (135)
......+|||+|||+++++++|+++|..||.|.. +.++.++.+++++|||||+|.+. +|.+|+..|++. .+.|
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 3466779999999999999999999999999976 99999988999999999999999 999999999999 9999
Q ss_pred eEEEEEeeCCCCCCC
Q 032702 107 WVIFVEYAKPRQPPT 121 (135)
Q Consensus 107 ~~l~v~~a~~~~~~~ 121 (135)
+.|+|.++++.....
T Consensus 98 r~l~V~~a~~~~~~~ 112 (131)
T 2m2b_A 98 KTINVEFAKGSKRDM 112 (131)
T ss_dssp CCCCCEECCCSCCCC
T ss_pred EEEEEEECCCCCCCC
Confidence 999999998876543
No 62
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.85 E-value=1e-19 Score=114.71 Aligned_cols=88 Identities=26% Similarity=0.337 Sum_probs=81.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEE
Q 032702 32 PQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFV 111 (135)
Q Consensus 32 ~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 111 (135)
+.....++|||+|||.++++++|+++|..||.|..+.+..++ ++..+|+|||+|.+.++|.+|+..|++..+.|+.|+|
T Consensus 30 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 108 (124)
T 2kt5_A 30 EGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDI 108 (124)
T ss_dssp CCCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 345677899999999999999999999999999999999996 8999999999999999999999999999999999999
Q ss_pred EeeCCCCCC
Q 032702 112 EYAKPRQPP 120 (135)
Q Consensus 112 ~~a~~~~~~ 120 (135)
++|.+....
T Consensus 109 ~~a~~~~~~ 117 (124)
T 2kt5_A 109 QLVASQIDL 117 (124)
T ss_dssp EEECCTTCC
T ss_pred EEeCCCCCC
Confidence 999876654
No 63
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=2.6e-20 Score=112.58 Aligned_cols=83 Identities=19% Similarity=0.274 Sum_probs=76.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHH----HHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEE
Q 032702 35 EPSTNLFVSGLSKRTTDETLR----DTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIF 110 (135)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~----~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~ 110 (135)
.+..+|||+|||+++++++|+ ++|..||.|..+.++.++.+ ++||||+|.+.++|.+|++.|++..+.|+.|+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 456799999999999999999 99999999999999988654 78999999999999999999999999999999
Q ss_pred EEeeCCCCCC
Q 032702 111 VEYAKPRQPP 120 (135)
Q Consensus 111 v~~a~~~~~~ 120 (135)
|.++++...+
T Consensus 84 V~~a~~~~~~ 93 (96)
T 2dgx_A 84 VSLATGASGP 93 (96)
T ss_dssp EEECCCSSCC
T ss_pred EEEcCCCCCC
Confidence 9999877653
No 64
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=7.1e-20 Score=111.59 Aligned_cols=87 Identities=43% Similarity=0.685 Sum_probs=78.2
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEE
Q 032702 32 PQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFV 111 (135)
Q Consensus 32 ~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 111 (135)
....+.++|||+|||.++++++|+++|..|+ .+.++.++.++.++|||||+|.+.++|++|+..|++..+.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTL 86 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 4456778999999999999999999999874 5677777778999999999999999999999999999999999999
Q ss_pred EeeCCCCCCC
Q 032702 112 EYAKPRQPPT 121 (135)
Q Consensus 112 ~~a~~~~~~~ 121 (135)
.+++++..+.
T Consensus 87 ~~a~~~~~~~ 96 (102)
T 2fc8_A 87 DWAKPKGEGG 96 (102)
T ss_dssp EECCCCCSSS
T ss_pred EEecCCCCCC
Confidence 9999887654
No 65
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.85 E-value=3.1e-20 Score=110.09 Aligned_cols=82 Identities=35% Similarity=0.572 Sum_probs=75.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEE
Q 032702 32 PQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFV 111 (135)
Q Consensus 32 ~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 111 (135)
....+.++|||+|||+++++++|+++|.+||.|..+.++.++.++.++|+|||+|.+.++|.+|++ +++..+.|+.|.|
T Consensus 6 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v 84 (87)
T 3s7r_A 6 KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDP 84 (87)
T ss_dssp -CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEE
Confidence 345677899999999999999999999999999999999998899999999999999999999997 5788899999999
Q ss_pred Eee
Q 032702 112 EYA 114 (135)
Q Consensus 112 ~~a 114 (135)
++|
T Consensus 85 ~~A 87 (87)
T 3s7r_A 85 KKA 87 (87)
T ss_dssp EEC
T ss_pred EeC
Confidence 875
No 66
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.84 E-value=2.1e-20 Score=123.37 Aligned_cols=89 Identities=25% Similarity=0.494 Sum_probs=80.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEE
Q 032702 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVE 112 (135)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 112 (135)
...+..+|||+|||+.+++++|+.+|..||.|..+.++.++.++.++|||||+|.+.++|..|+..|++..+.|+.|.|.
T Consensus 68 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 147 (165)
T 1rk8_A 68 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 147 (165)
T ss_dssp CCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 44567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred eeCCCCCCC
Q 032702 113 YAKPRQPPT 121 (135)
Q Consensus 113 ~a~~~~~~~ 121 (135)
++.++....
T Consensus 148 ~a~~~~~~~ 156 (165)
T 1rk8_A 148 WCFVKGPKR 156 (165)
T ss_dssp ESEECC---
T ss_pred EecCCCCCC
Confidence 998776644
No 67
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.84 E-value=2.6e-20 Score=110.77 Aligned_cols=82 Identities=22% Similarity=0.418 Sum_probs=77.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEeeC
Q 032702 36 PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAK 115 (135)
Q Consensus 36 ~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 115 (135)
+.++|||+|||.++++++|+++|..||.|..+.+..++.++.++|+|||+|.+.++|++|+ .+++..+.|+.|+|.+++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 3579999999999999999999999999999999999889999999999999999999999 899999999999999997
Q ss_pred CCC
Q 032702 116 PRQ 118 (135)
Q Consensus 116 ~~~ 118 (135)
+..
T Consensus 84 ~~~ 86 (89)
T 3ucg_A 84 TNR 86 (89)
T ss_dssp TTS
T ss_pred CCC
Confidence 743
No 68
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.84 E-value=2.3e-20 Score=111.75 Aligned_cols=85 Identities=33% Similarity=0.432 Sum_probs=78.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEe
Q 032702 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEY 113 (135)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 113 (135)
..+.++|||+|||.++++++|+++|..||.|..+.++.+ ++..+|+|||+|.+.++|++|+..|++..+.|+.|+|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 456789999999999999999999999999999998874 788999999999999999999999999999999999999
Q ss_pred eCCCCCC
Q 032702 114 AKPRQPP 120 (135)
Q Consensus 114 a~~~~~~ 120 (135)
+++...+
T Consensus 83 a~~~~~~ 89 (92)
T 2dgv_A 83 DRNASGP 89 (92)
T ss_dssp CSCCSSC
T ss_pred cCCCCCC
Confidence 9887654
No 69
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.84 E-value=5.1e-20 Score=118.04 Aligned_cols=84 Identities=31% Similarity=0.483 Sum_probs=78.1
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEE
Q 032702 31 RPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIF 110 (135)
Q Consensus 31 ~~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~ 110 (135)
.....+..+|||+|||.++++++|+++|..||.|..+.++.++.++..+|+|||+|.+.++|++|++.|++..+.|+.|+
T Consensus 57 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 136 (140)
T 2ku7_A 57 GGSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 136 (140)
T ss_dssp CSSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEE
T ss_pred CCCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34456678999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred EEee
Q 032702 111 VEYA 114 (135)
Q Consensus 111 v~~a 114 (135)
|++|
T Consensus 137 v~~A 140 (140)
T 2ku7_A 137 VNLA 140 (140)
T ss_dssp EEC-
T ss_pred EEeC
Confidence 9986
No 70
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.84 E-value=9.4e-21 Score=119.38 Aligned_cols=84 Identities=23% Similarity=0.412 Sum_probs=78.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEee
Q 032702 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYA 114 (135)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 114 (135)
.+.++|||+|||.++++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|.+|+ .|++..+.|+.|+|.++
T Consensus 34 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 112 (124)
T 2jwn_A 34 IDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPK 112 (124)
T ss_dssp HHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 34689999999999999999999999999999999999889999999999999999999999 79999999999999999
Q ss_pred CCCCC
Q 032702 115 KPRQP 119 (135)
Q Consensus 115 ~~~~~ 119 (135)
++...
T Consensus 113 ~~~~~ 117 (124)
T 2jwn_A 113 RTNMP 117 (124)
T ss_dssp SCCCS
T ss_pred CCCCC
Confidence 86554
No 71
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.4e-20 Score=116.25 Aligned_cols=86 Identities=31% Similarity=0.499 Sum_probs=78.3
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEE
Q 032702 31 RPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIF 110 (135)
Q Consensus 31 ~~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~ 110 (135)
.....+.++|||+|||.++++++|+++|..||.|..+.++.+. +..+|+|||+|.+.++|++|+..|++..+.|+.|+
T Consensus 23 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 100 (109)
T 2err_A 23 TENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 100 (109)
T ss_dssp CSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECE
T ss_pred ccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 4455677899999999999999999999999999999998874 34789999999999999999999999999999999
Q ss_pred EEeeCCCC
Q 032702 111 VEYAKPRQ 118 (135)
Q Consensus 111 v~~a~~~~ 118 (135)
|++++++.
T Consensus 101 V~~a~~~~ 108 (109)
T 2err_A 101 VNNATARV 108 (109)
T ss_dssp EEECCCSC
T ss_pred EEECCCCc
Confidence 99998763
No 72
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.8e-20 Score=114.76 Aligned_cols=83 Identities=22% Similarity=0.307 Sum_probs=74.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCC--ceeCCeEEEE
Q 032702 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDG--KFLDGWVIFV 111 (135)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~--~~~~g~~l~v 111 (135)
+.+..+|||+|||+++++++|+++|.+||.|..+.++.+ +|||||+|.+.++|+.|++.|++ ..+.|+.|+|
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 86 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 86 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 345679999999999999999999999999999999865 57999999999999999998874 6799999999
Q ss_pred EeeCCCCCCCC
Q 032702 112 EYAKPRQPPTL 122 (135)
Q Consensus 112 ~~a~~~~~~~~ 122 (135)
.+++++.....
T Consensus 87 ~~A~~~~~~~~ 97 (105)
T 1sjq_A 87 QFSNHKELKTD 97 (105)
T ss_dssp CCCSSSSCCCT
T ss_pred EEcCCCCCCcc
Confidence 99988776543
No 73
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.4e-19 Score=110.36 Aligned_cols=85 Identities=24% Similarity=0.309 Sum_probs=74.6
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhC--CceeCCeE
Q 032702 31 RPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD--GKFLDGWV 108 (135)
Q Consensus 31 ~~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~--~~~~~g~~ 108 (135)
.....+..+|||+|||+++++++|+++|.+||.|..+.++.+ +|+|||+|.+.++|..|++.|+ +..+.|+.
T Consensus 9 ~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~ 82 (101)
T 2cq1_A 9 KMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQP 82 (101)
T ss_dssp CCCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEE
T ss_pred CccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcE
Confidence 344566789999999999999999999999999999988764 5799999999999999999874 66799999
Q ss_pred EEEEeeCCCCCCC
Q 032702 109 IFVEYAKPRQPPT 121 (135)
Q Consensus 109 l~v~~a~~~~~~~ 121 (135)
|.|.+++++....
T Consensus 83 l~V~~a~~~~~~~ 95 (101)
T 2cq1_A 83 IYIQYSNHKELKT 95 (101)
T ss_dssp CEEEECSCSSCCC
T ss_pred EEEEEcCcccCcC
Confidence 9999998776643
No 74
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.84 E-value=1.8e-20 Score=122.69 Aligned_cols=82 Identities=30% Similarity=0.408 Sum_probs=77.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccC--CeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEe
Q 032702 36 PSTNLFVSGLSKRTTDETLRDTFSAFG--EVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEY 113 (135)
Q Consensus 36 ~~~~v~v~nlp~~~~~~~l~~~f~~~g--~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 113 (135)
...+|||+|||+++++++|+++|..|| .|..+.++.++.+|.++|||||+|.+.++|++|+..|++..+.|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 457999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred eCCC
Q 032702 114 AKPR 117 (135)
Q Consensus 114 a~~~ 117 (135)
+.++
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 9753
No 75
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=5.9e-20 Score=109.80 Aligned_cols=84 Identities=18% Similarity=0.334 Sum_probs=78.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEE
Q 032702 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVE 112 (135)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 112 (135)
......+|||+|||+++++++|+++|..| .|..+.++.+ .++.++|+|||+|.+.++|.+|+. +++..+.|+.|.|.
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~ 82 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVF 82 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEE
Confidence 34567899999999999999999999999 8999999998 789999999999999999999999 99999999999999
Q ss_pred eeCCCCC
Q 032702 113 YAKPRQP 119 (135)
Q Consensus 113 ~a~~~~~ 119 (135)
++.+++.
T Consensus 83 ~a~~~~~ 89 (91)
T 2dgw_A 83 REKSGPS 89 (91)
T ss_dssp EESSCCC
T ss_pred ECCcCCC
Confidence 9987743
No 76
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.84 E-value=3.1e-21 Score=117.57 Aligned_cols=83 Identities=28% Similarity=0.388 Sum_probs=78.5
Q ss_pred CCCCeEEEcCCCC------CCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC-e
Q 032702 35 EPSTNLFVSGLSK------RTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDG-W 107 (135)
Q Consensus 35 ~~~~~v~v~nlp~------~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g-~ 107 (135)
...++|||+|||. ++++++|+++|.+||.|..+.++.++.|++++|||||+|.+.++|.+|+..|++..+.| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 4467999999999 99999999999999999999999998899999999999999999999999999999999 9
Q ss_pred EEEEEeeCCC
Q 032702 108 VIFVEYAKPR 117 (135)
Q Consensus 108 ~l~v~~a~~~ 117 (135)
.|+|.++.++
T Consensus 84 ~l~V~~a~~~ 93 (100)
T 3ns6_A 84 RLFLYTMKDV 93 (100)
T ss_dssp BCEEEESHHH
T ss_pred EEEEEECchh
Confidence 9999999754
No 77
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=1.1e-19 Score=110.66 Aligned_cols=85 Identities=31% Similarity=0.533 Sum_probs=76.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEE
Q 032702 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVE 112 (135)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 112 (135)
...+.++|||+|||.++++++|+++|..||.| .++.+ .++..+|+|||+|.+.++|++|+..|++..+.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 86 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEE
Confidence 44667899999999999999999999999977 45555 678899999999999999999999999999999999999
Q ss_pred eeCCCCCCC
Q 032702 113 YAKPRQPPT 121 (135)
Q Consensus 113 ~a~~~~~~~ 121 (135)
+++++..+.
T Consensus 87 ~a~~~~~~~ 95 (101)
T 2fc9_A 87 LQGPRGSPN 95 (101)
T ss_dssp ECSSCCCCC
T ss_pred EcCCCCCCC
Confidence 998876644
No 78
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.84 E-value=5.4e-20 Score=120.32 Aligned_cols=88 Identities=36% Similarity=0.574 Sum_probs=82.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEE
Q 032702 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVE 112 (135)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 112 (135)
......+|||+|||+++++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|..|+..|++..+.|+.|+|.
T Consensus 66 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 145 (158)
T 2kn4_A 66 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 145 (158)
T ss_dssp CCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34557899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred eeCCCCCC
Q 032702 113 YAKPRQPP 120 (135)
Q Consensus 113 ~a~~~~~~ 120 (135)
++++...+
T Consensus 146 ~a~~~~~~ 153 (158)
T 2kn4_A 146 MARYGRPP 153 (158)
T ss_dssp EECCSSCC
T ss_pred ECCCCCCC
Confidence 99877554
No 79
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=5.8e-20 Score=113.83 Aligned_cols=87 Identities=22% Similarity=0.326 Sum_probs=78.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHH---HHhhccCCeEEEEEeecCCCC---CcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 032702 33 QAEPSTNLFVSGLSKRTTDETLR---DTFSAFGEVVHAKIVKHRESG---YSKGFGFVKYATLEAAGKAIEGMDGKFLDG 106 (135)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~---~~f~~~g~i~~~~~~~~~~~~---~~~g~afv~f~~~~~a~~a~~~l~~~~~~g 106 (135)
......+|||+|||+++++++|+ ++|.+||.|..+.++.+..++ .++|+|||+|.+.++|++|++.|++..+.|
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 34556799999999999999999 999999999999998886543 456999999999999999999999999999
Q ss_pred eEEEEEeeCCCCC
Q 032702 107 WVIFVEYAKPRQP 119 (135)
Q Consensus 107 ~~l~v~~a~~~~~ 119 (135)
+.|+|.++.++..
T Consensus 91 r~l~V~~a~~k~~ 103 (111)
T 2cpi_A 91 RTLKASLGTTKYC 103 (111)
T ss_dssp EEEEEESCCCCSC
T ss_pred EEEEEEecccccc
Confidence 9999999998874
No 80
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=1.9e-19 Score=111.00 Aligned_cols=81 Identities=25% Similarity=0.375 Sum_probs=74.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC-----eE
Q 032702 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDG-----WV 108 (135)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g-----~~ 108 (135)
....++|||+|||+++++++|+++|..||.|..+.++.+ |+|||+|.+.++|++|++.|++..+.| +.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~ 84 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 84 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceE
Confidence 356789999999999999999999999999999999765 699999999999999999999999999 99
Q ss_pred EEEEeeCCCCCCC
Q 032702 109 IFVEYAKPRQPPT 121 (135)
Q Consensus 109 l~v~~a~~~~~~~ 121 (135)
|+|.++.++....
T Consensus 85 i~V~~a~~~~~~~ 97 (108)
T 1x4c_A 85 IRVKVDGPRSPSY 97 (108)
T ss_dssp EEEEESSCCSCCC
T ss_pred EEEEeCCCCCCCC
Confidence 9999999876543
No 81
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=5.7e-21 Score=116.84 Aligned_cols=87 Identities=31% Similarity=0.553 Sum_probs=81.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEe
Q 032702 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEY 113 (135)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 113 (135)
+.+.++|||+|||.++++++|+++|..||.|..+.++.++.++.++|+|||+|.+.++|.+|++.|++..+.|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 84 (104)
T 1p1t_A 5 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDN 84 (104)
T ss_dssp HHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEE
T ss_pred CCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Confidence 34567999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred eCCCCCC
Q 032702 114 AKPRQPP 120 (135)
Q Consensus 114 a~~~~~~ 120 (135)
+.++...
T Consensus 85 a~~~~~~ 91 (104)
T 1p1t_A 85 AASEKNK 91 (104)
T ss_dssp TTCTTHH
T ss_pred CCCccch
Confidence 9887653
No 82
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.7e-19 Score=112.04 Aligned_cols=85 Identities=27% Similarity=0.574 Sum_probs=78.3
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCcee-------
Q 032702 32 PQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFL------- 104 (135)
Q Consensus 32 ~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~------- 104 (135)
....+.++|||+|||.++++++|+++|..||.|..+.++.++ ++.++|||||+|.+.++|..|+..|++..+
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~ 98 (114)
T 1x5o_A 20 QQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVS 98 (114)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCcccc
Confidence 344567899999999999999999999999999999999996 899999999999999999999999999998
Q ss_pred -CCeEEEEEeeCCC
Q 032702 105 -DGWVIFVEYAKPR 117 (135)
Q Consensus 105 -~g~~l~v~~a~~~ 117 (135)
.++.|.|.++.++
T Consensus 99 ~~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 99 APTEPLLCKFSGPS 112 (114)
T ss_dssp CCSSCBEEEECCCS
T ss_pred CCCCceeEEccCCC
Confidence 5788999999864
No 83
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=9.7e-20 Score=111.59 Aligned_cols=87 Identities=21% Similarity=0.219 Sum_probs=78.3
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEE-EEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEE
Q 032702 32 PQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVH-AKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIF 110 (135)
Q Consensus 32 ~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~-~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~ 110 (135)
+......+|||+|||+++++++|+++|..||.|.. +.++.+ .+++++|+|||+|.+.++|++|+.. ++..+.|+.|.
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~ 87 (104)
T 1wg5_A 10 PDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIE 87 (104)
T ss_dssp SSCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEE
Confidence 34456789999999999999999999999999987 888888 7899999999999999999999997 99999999999
Q ss_pred EEeeCCCCCC
Q 032702 111 VEYAKPRQPP 120 (135)
Q Consensus 111 v~~a~~~~~~ 120 (135)
|.++.+++..
T Consensus 88 v~~~~~~~~~ 97 (104)
T 1wg5_A 88 IFKSSRAEVR 97 (104)
T ss_dssp EEEECTTTSC
T ss_pred EEECCHHHHH
Confidence 9999776543
No 84
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.83 E-value=1.3e-20 Score=120.71 Aligned_cols=90 Identities=37% Similarity=0.589 Sum_probs=83.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEE
Q 032702 32 PQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFV 111 (135)
Q Consensus 32 ~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 111 (135)
+...+..+|||+|||.++++++|+++|..||.|..+.++.++.++..+|+|||+|.+.++|++|+..|++..+.|+.|+|
T Consensus 42 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 121 (135)
T 2lea_A 42 PDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRV 121 (135)
T ss_dssp SSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34466789999999999999999999999999999999998888999999999999999999999999999999999999
Q ss_pred EeeCCCCCCC
Q 032702 112 EYAKPRQPPT 121 (135)
Q Consensus 112 ~~a~~~~~~~ 121 (135)
.++++...+.
T Consensus 122 ~~a~~~~~~~ 131 (135)
T 2lea_A 122 QMARYGRPPD 131 (135)
T ss_dssp EECCCCCCCT
T ss_pred EECCCCCCCc
Confidence 9998776543
No 85
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=8e-20 Score=112.62 Aligned_cols=87 Identities=24% Similarity=0.362 Sum_probs=79.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCC-eEEEEEe-ecCCCCCcccEEEEEeCCHHHHHHHHHhhC--CceeCCeEEE
Q 032702 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGE-VVHAKIV-KHRESGYSKGFGFVKYATLEAAGKAIEGMD--GKFLDGWVIF 110 (135)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~g~-i~~~~~~-~~~~~~~~~g~afv~f~~~~~a~~a~~~l~--~~~~~g~~l~ 110 (135)
.+.++|||+|||+++++++|+++|..||. |..+.++ .++.++.++|||||+|.+.++|..|+..|+ +..+.|+.|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 45679999999999999999999999998 9999988 777788999999999999999999999996 5889999999
Q ss_pred EEeeCCCCCCC
Q 032702 111 VEYAKPRQPPT 121 (135)
Q Consensus 111 v~~a~~~~~~~ 121 (135)
|.+++++..+.
T Consensus 86 V~~a~~~~~~~ 96 (109)
T 2dis_A 86 VDWAEPEIDVD 96 (109)
T ss_dssp EEESCSSCSTT
T ss_pred EEEcCCCCCcC
Confidence 99999877643
No 86
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=9.7e-20 Score=111.21 Aligned_cols=83 Identities=16% Similarity=0.190 Sum_probs=73.7
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCc--eeCCeEEE
Q 032702 34 AEPSTNLFVSGLSK-RTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGK--FLDGWVIF 110 (135)
Q Consensus 34 ~~~~~~v~v~nlp~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~--~~~g~~l~ 110 (135)
..+..+|||+|||+ ++++++|+++|.+||.|..+.++.++ ++|||+|.+.++|..|++.|++. .+.|+.|+
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k------g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 85 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI------NEAFIEMATTEDAQAAVDYYTTTPALVFGKPVR 85 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS------SCEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC------CEEEEEECCHHHHHHHHHHHcCCCceECCcEEE
Confidence 34678999999999 99999999999999999999998653 69999999999999999998864 59999999
Q ss_pred EEeeCCCCCCCC
Q 032702 111 VEYAKPRQPPTL 122 (135)
Q Consensus 111 v~~a~~~~~~~~ 122 (135)
|.+++..+....
T Consensus 86 V~~a~~~~~~~~ 97 (102)
T 1x4d_A 86 VHLSQKYKRIKS 97 (102)
T ss_dssp EEEECCCTTSSC
T ss_pred EEECCCCCCCCC
Confidence 999997665543
No 87
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.83 E-value=1.7e-20 Score=112.95 Aligned_cols=82 Identities=13% Similarity=0.190 Sum_probs=75.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEee
Q 032702 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYA 114 (135)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 114 (135)
....+|||+|||+++++++|+++|..||.|..+.++.++.++..+|+|||+|.+.++|++|++.|++..+.|+.|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 34579999999999999999999999999988888888888999999999999999999999999999999999999988
Q ss_pred CC
Q 032702 115 KP 116 (135)
Q Consensus 115 ~~ 116 (135)
.+
T Consensus 93 ~s 94 (95)
T 2ek1_A 93 SS 94 (95)
T ss_dssp C-
T ss_pred cC
Confidence 64
No 88
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.83 E-value=3.7e-19 Score=108.68 Aligned_cols=83 Identities=33% Similarity=0.506 Sum_probs=74.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEE
Q 032702 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVE 112 (135)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 112 (135)
...+.++|||+|||+++++++|+++|..||.|..+.+++ ++|||+|.+.++|.+|+..|++..+.|+.|+|.
T Consensus 7 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 78 (103)
T 2dgu_A 7 GMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK--------DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIV 78 (103)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC--------CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEE
Confidence 345678999999999999999999999999999998863 499999999999999999999999999999999
Q ss_pred eeCCCCCCCCC
Q 032702 113 YAKPRQPPTLP 123 (135)
Q Consensus 113 ~a~~~~~~~~~ 123 (135)
+++++......
T Consensus 79 ~a~~~~~~~~~ 89 (103)
T 2dgu_A 79 FAKPPDQKRKE 89 (103)
T ss_dssp ECCCCCCCCCC
T ss_pred EcCCCcccchh
Confidence 99888765543
No 89
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=7.9e-21 Score=112.25 Aligned_cols=81 Identities=25% Similarity=0.427 Sum_probs=75.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEee
Q 032702 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYA 114 (135)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 114 (135)
.+..+|||+|||+++++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|..|+..|++..+.|+.|++.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 46679999999999999999999999999999999999888999999999999999999999999999999999887765
Q ss_pred C
Q 032702 115 K 115 (135)
Q Consensus 115 ~ 115 (135)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 90
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=1.9e-19 Score=108.86 Aligned_cols=81 Identities=32% Similarity=0.513 Sum_probs=73.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeC--CeEEE
Q 032702 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLD--GWVIF 110 (135)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~--g~~l~ 110 (135)
...+..+|||+|||.++++++|+++|..||.|..+.+..+ +++|||+|.+.++|++|++.|++..+. |+.|+
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~ 86 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLR 86 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEE
Confidence 3455689999999999999999999999999999988654 579999999999999999999999999 99999
Q ss_pred EEeeCCCCC
Q 032702 111 VEYAKPRQP 119 (135)
Q Consensus 111 v~~a~~~~~ 119 (135)
|.++++++.
T Consensus 87 V~~a~~~~~ 95 (97)
T 1why_A 87 VDFAKSGPS 95 (97)
T ss_dssp EEECCCCCC
T ss_pred EEECCCCCC
Confidence 999998764
No 91
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.9e-20 Score=115.66 Aligned_cols=85 Identities=26% Similarity=0.493 Sum_probs=75.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCe----EEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEE
Q 032702 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEV----VHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVI 109 (135)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i----~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l 109 (135)
..+.++|||+|||.++++++|+++|..||.| ..+.+. ++.++|||||+|.+.++|..|+..|++..+.|+.|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~----~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 97 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM----TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKIL 97 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE----CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC----CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 4567899999999999999999999999988 444443 67889999999999999999999999999999999
Q ss_pred EEEeeCCCCCCCC
Q 032702 110 FVEYAKPRQPPTL 122 (135)
Q Consensus 110 ~v~~a~~~~~~~~ 122 (135)
+|.+++++.....
T Consensus 98 ~v~~a~~~~~~~~ 110 (115)
T 2cpx_A 98 VIEFGKNKKQRSS 110 (115)
T ss_dssp EEEECCCCSCCCC
T ss_pred EEEEccCCCCCCC
Confidence 9999998776543
No 92
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.82 E-value=5.6e-21 Score=116.40 Aligned_cols=87 Identities=24% Similarity=0.322 Sum_probs=77.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEE
Q 032702 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVE 112 (135)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 112 (135)
...+..+|||+|||.++++++|+++|..||.|.. .++.+..++.++|||||+|.+.++|.+|++ |++..+.|+.|+|.
T Consensus 13 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~ 90 (101)
T 1fj7_A 13 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 90 (101)
T ss_dssp TCSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEE
Confidence 3456789999999999999999999999998877 556666778899999999999999999999 99999999999999
Q ss_pred eeCCCCCCC
Q 032702 113 YAKPRQPPT 121 (135)
Q Consensus 113 ~a~~~~~~~ 121 (135)
+++++....
T Consensus 91 ~a~~~~~~~ 99 (101)
T 1fj7_A 91 KPKGRDGTR 99 (101)
T ss_dssp CCSCCCCSS
T ss_pred EcCCCCCCC
Confidence 998876643
No 93
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=3.2e-20 Score=117.12 Aligned_cols=85 Identities=16% Similarity=0.250 Sum_probs=76.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEE
Q 032702 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVE 112 (135)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 112 (135)
...+.++|||+|||+++++++|+++|..||.|..+.++.+..++.++|||||+|.+.++|.+|+. +++..+.|+.|.|.
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVH 99 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 34566899999999999999999999999999876666666789999999999999999999999 99999999999999
Q ss_pred eeCCCC
Q 032702 113 YAKPRQ 118 (135)
Q Consensus 113 ~a~~~~ 118 (135)
++.++.
T Consensus 100 ~a~~~~ 105 (124)
T 1wel_A 100 PITKKG 105 (124)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 997644
No 94
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.82 E-value=1e-19 Score=112.29 Aligned_cols=81 Identities=31% Similarity=0.480 Sum_probs=72.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEE
Q 032702 32 PQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFV 111 (135)
Q Consensus 32 ~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 111 (135)
....+..+|||+|||.++++++|+++|..||.|..+.+. +|+|||+|.+.++|++|+..|++..+.|+.|.|
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 97 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEV 97 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 445677899999999999999999999999999999887 469999999999999999999999999999999
Q ss_pred EeeCCCCCC
Q 032702 112 EYAKPRQPP 120 (135)
Q Consensus 112 ~~a~~~~~~ 120 (135)
.+++++..+
T Consensus 98 ~~a~~~~~r 106 (108)
T 2jvo_A 98 VYSKLPAKR 106 (108)
T ss_dssp ESCSCCC--
T ss_pred EEecCCCCC
Confidence 999887654
No 95
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=2.4e-19 Score=106.94 Aligned_cols=80 Identities=29% Similarity=0.501 Sum_probs=73.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEe
Q 032702 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEY 113 (135)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 113 (135)
..+.++|||+|||.++++++|+++|..||.|..+.++ +++|||+|.+.++|++|+..|++..+.|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 4567899999999999999999999999999999986 45999999999999999999999999999999999
Q ss_pred eCCCCCCC
Q 032702 114 AKPRQPPT 121 (135)
Q Consensus 114 a~~~~~~~ 121 (135)
++++....
T Consensus 77 a~~~~~~~ 84 (90)
T 2dnq_A 77 SKNKSKAS 84 (90)
T ss_dssp SSCCCCCC
T ss_pred CCCCCCCC
Confidence 98877654
No 96
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=2.4e-19 Score=110.62 Aligned_cols=84 Identities=27% Similarity=0.566 Sum_probs=76.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEE
Q 032702 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVE 112 (135)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 112 (135)
.....++|||+|||.++++++|+++|..||.|..+.++.+ +|+|||+|.+.++|.+|+..|++..+.|+.|+|.
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 94 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 94 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 4456789999999999999999999999999999998865 5799999999999999999999999999999999
Q ss_pred eeCCCCCCCC
Q 032702 113 YAKPRQPPTL 122 (135)
Q Consensus 113 ~a~~~~~~~~ 122 (135)
+++++.....
T Consensus 95 ~a~~~~~~~~ 104 (109)
T 1x4g_A 95 WGKESPDMTS 104 (109)
T ss_dssp CCCCCCSSCC
T ss_pred ecCCCCCCCC
Confidence 9998877554
No 97
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=2.8e-19 Score=106.69 Aligned_cols=83 Identities=29% Similarity=0.417 Sum_probs=75.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEE
Q 032702 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVE 112 (135)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 112 (135)
...+.++|||+|||.++++++|+++|..||.|..+.++.+ +|||+|.+.++|++|+..|++..+.|+.|+|.
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 76 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD--------YAFVHMEKEADAKAAIAQLNGKEVKGKRINVE 76 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS--------CEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3456789999999999999999999999999999998743 99999999999999999999999999999999
Q ss_pred eeCCCCCCCCC
Q 032702 113 YAKPRQPPTLP 123 (135)
Q Consensus 113 ~a~~~~~~~~~ 123 (135)
++++......+
T Consensus 77 ~a~~~~~~~~~ 87 (90)
T 2dnp_A 77 LSTKGQKKSGP 87 (90)
T ss_dssp ESCCCCCCCSC
T ss_pred ECCCCCCCCCC
Confidence 99988665543
No 98
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.82 E-value=1.1e-19 Score=113.73 Aligned_cols=85 Identities=19% Similarity=0.206 Sum_probs=77.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCC---eEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeE
Q 032702 32 PQAEPSTNLFVSGLSKRTTDETLRDTFSAFGE---VVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWV 108 (135)
Q Consensus 32 ~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~---i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~ 108 (135)
+.....++|||+|||+++++++|+++|..||. |..+.++.++. ++++|+|||+|.+.++|++|++ +++..+.|+.
T Consensus 12 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~ 89 (118)
T 2db1_A 12 PEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRY 89 (118)
T ss_dssp SCBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeE
Confidence 34466789999999999999999999999998 89999999865 9999999999999999999999 9999999999
Q ss_pred EEEEeeCCCC
Q 032702 109 IFVEYAKPRQ 118 (135)
Q Consensus 109 l~v~~a~~~~ 118 (135)
|+|.++..++
T Consensus 90 i~V~~a~~~~ 99 (118)
T 2db1_A 90 IEVFKSHRTE 99 (118)
T ss_dssp EEEEEECHHH
T ss_pred EEEEECCHHH
Confidence 9999997544
No 99
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=4.5e-19 Score=106.17 Aligned_cols=82 Identities=30% Similarity=0.505 Sum_probs=74.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEE
Q 032702 32 PQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFV 111 (135)
Q Consensus 32 ~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 111 (135)
....+.++|||+|||.++++++|+++|..||.|..+.++.+ +|||+|.+.++|.+|+..|++..+.|+.|+|
T Consensus 5 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 76 (92)
T 2dgt_A 5 SSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHV 76 (92)
T ss_dssp CCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS--------EEEEEESCHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCeeCCcEEEE
Confidence 34566789999999999999999999999999999998643 9999999999999999999999999999999
Q ss_pred EeeCCCCCCC
Q 032702 112 EYAKPRQPPT 121 (135)
Q Consensus 112 ~~a~~~~~~~ 121 (135)
.+++++....
T Consensus 77 ~~a~~~~~~~ 86 (92)
T 2dgt_A 77 QLSTSRLRTA 86 (92)
T ss_dssp EESSCCCSCC
T ss_pred EEccCCCCCC
Confidence 9998876643
No 100
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.82 E-value=2.7e-19 Score=108.34 Aligned_cols=80 Identities=21% Similarity=0.402 Sum_probs=71.5
Q ss_pred CCCCCCCCeEEEcCCCC-CCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEE
Q 032702 31 RPQAEPSTNLFVSGLSK-RTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVI 109 (135)
Q Consensus 31 ~~~~~~~~~v~v~nlp~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l 109 (135)
.....+.++|||+|||+ ++++++|+++|..||.|..+.+. +|+|||+|.+.++|.+|+..|++..+.|+.|
T Consensus 16 ~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 87 (97)
T 2xnq_A 16 PRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKL 87 (97)
T ss_dssp ---CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEEC
T ss_pred cCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 44556788999999998 99999999999999999999883 5699999999999999999999999999999
Q ss_pred EEEeeCCCC
Q 032702 110 FVEYAKPRQ 118 (135)
Q Consensus 110 ~v~~a~~~~ 118 (135)
+|++++++.
T Consensus 88 ~V~~a~~~~ 96 (97)
T 2xnq_A 88 ILEVSSSNA 96 (97)
T ss_dssp EEEECCCCC
T ss_pred EEEecCCCC
Confidence 999997653
No 101
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.82 E-value=1.1e-19 Score=111.52 Aligned_cols=85 Identities=22% Similarity=0.321 Sum_probs=76.7
Q ss_pred CCCCCCCeEEEcCCCCCC------CHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeC
Q 032702 32 PQAEPSTNLFVSGLSKRT------TDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLD 105 (135)
Q Consensus 32 ~~~~~~~~v~v~nlp~~~------~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~ 105 (135)
......++|||+|||+.+ ++++|+++|..||.|..+.++ +.+|.++|||||+|.+.++|.+|+..|++..+.
T Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~ 87 (105)
T 2nlw_A 10 EADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLD 87 (105)
T ss_dssp SCCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECS
T ss_pred CCCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccC
Confidence 344557899999999999 789999999999999999887 368899999999999999999999999999999
Q ss_pred Ce-EEEEEeeCCCC
Q 032702 106 GW-VIFVEYAKPRQ 118 (135)
Q Consensus 106 g~-~l~v~~a~~~~ 118 (135)
|+ .|+|.++....
T Consensus 88 g~~~l~V~~a~~~~ 101 (105)
T 2nlw_A 88 KQHTFRVNLFTDFD 101 (105)
T ss_dssp TTCEEEEECSCCCC
T ss_pred CCceEEEEEcchHh
Confidence 98 99999997543
No 102
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=2.1e-19 Score=112.46 Aligned_cols=84 Identities=21% Similarity=0.303 Sum_probs=74.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCC--ceeCCeEEE
Q 032702 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDG--KFLDGWVIF 110 (135)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~--~~~~g~~l~ 110 (135)
...+..+|||+|||+++++++|+++|.+||.|..+.++.+ +|+|||+|.+.++|.+|++.|++ ..+.|+.|+
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~ 100 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 100 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEE
Confidence 4456789999999999999999999999999999998865 57999999999999999998874 579999999
Q ss_pred EEeeCCCCCCCC
Q 032702 111 VEYAKPRQPPTL 122 (135)
Q Consensus 111 v~~a~~~~~~~~ 122 (135)
|.+++++.....
T Consensus 101 V~~a~~k~~~~~ 112 (119)
T 2ad9_A 101 IQFSNHKELKTD 112 (119)
T ss_dssp EEECSSSSCCCC
T ss_pred EEEccCCCCCcc
Confidence 999987776543
No 103
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=2.8e-19 Score=109.29 Aligned_cols=85 Identities=20% Similarity=0.219 Sum_probs=76.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEE
Q 032702 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVE 112 (135)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 112 (135)
.....++|||+|||+++++++|+++|..||.+ .+.++.++ +++++|+|||+|.+.++|++|++ +++..+.++.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELF 87 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 34556899999999999999999999999955 99999996 89999999999999999999995 79999999999999
Q ss_pred eeCCCCCC
Q 032702 113 YAKPRQPP 120 (135)
Q Consensus 113 ~a~~~~~~ 120 (135)
.+.+....
T Consensus 88 ~~~~~~~~ 95 (102)
T 1wez_A 88 LNSTAGTS 95 (102)
T ss_dssp EECCCCCC
T ss_pred ECCCCCCC
Confidence 98876643
No 104
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=2.9e-19 Score=108.37 Aligned_cols=84 Identities=30% Similarity=0.393 Sum_probs=75.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEE
Q 032702 32 PQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFV 111 (135)
Q Consensus 32 ~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 111 (135)
....+.++|||+|||+++++++|+++|..||.|..+.+..+ +++|||+|.+.++|.+|++.|++..+.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v 83 (99)
T 2cpj_A 10 KTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRV 83 (99)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEE
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEE
Confidence 34466789999999999999999999999999999988754 579999999999999999999999999999999
Q ss_pred EeeCCCCCCC
Q 032702 112 EYAKPRQPPT 121 (135)
Q Consensus 112 ~~a~~~~~~~ 121 (135)
.+++++....
T Consensus 84 ~~a~~~~~~~ 93 (99)
T 2cpj_A 84 RFACHSASLT 93 (99)
T ss_dssp EESSCCSCCC
T ss_pred EEcCCCCCCC
Confidence 9998876543
No 105
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=2e-19 Score=108.78 Aligned_cols=84 Identities=18% Similarity=0.282 Sum_probs=73.8
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEE
Q 032702 31 RPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIF 110 (135)
Q Consensus 31 ~~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~ 110 (135)
.......++|||+|||+++++++|+++|..||.|. +.++.+ ..+|+|||+|.+.++|..|+..|++..+.|+.|+
T Consensus 13 ~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 87 (97)
T 2e5j_A 13 GEGAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLR 87 (97)
T ss_dssp CSSSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 34455678999999999999999999999999986 566544 4678999999999999999999999999999999
Q ss_pred EEeeCCCCC
Q 032702 111 VEYAKPRQP 119 (135)
Q Consensus 111 v~~a~~~~~ 119 (135)
|.++++++.
T Consensus 88 V~~a~~~~~ 96 (97)
T 2e5j_A 88 VALARQQRD 96 (97)
T ss_dssp EEECCCCCC
T ss_pred EEEcCCCCC
Confidence 999987653
No 106
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.4e-19 Score=112.56 Aligned_cols=84 Identities=13% Similarity=0.137 Sum_probs=77.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCe-EEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEE
Q 032702 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEV-VHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFV 111 (135)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i-~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 111 (135)
...+..+|||+|||+++++++|+++|..||.| ..+.++.++ ++.++|||||+|.+.++|++|+.. ++..+.|+.|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v 88 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFV 88 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEE
Confidence 34567899999999999999999999999999 889999996 899999999999999999999996 999999999999
Q ss_pred EeeCCCC
Q 032702 112 EYAKPRQ 118 (135)
Q Consensus 112 ~~a~~~~ 118 (135)
.++.++.
T Consensus 89 ~~a~~~~ 95 (114)
T 2cpy_A 89 HVVTLED 95 (114)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 9998665
No 107
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=3.7e-19 Score=109.07 Aligned_cols=82 Identities=16% Similarity=0.361 Sum_probs=72.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCc--eeCCeEEE
Q 032702 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGK--FLDGWVIF 110 (135)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~--~~~g~~l~ 110 (135)
...+..+|||+|||+++++++|+++|.+||.|..+.++.+ +|+|||+|.+.++|..|++.|++. .+.|+.|+
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~ 84 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAF 84 (104)
T ss_dssp CCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 3456689999999999999999999999999999988754 579999999999999999988754 48999999
Q ss_pred EEeeCCCCCC
Q 032702 111 VEYAKPRQPP 120 (135)
Q Consensus 111 v~~a~~~~~~ 120 (135)
|.+++.+...
T Consensus 85 V~~a~~~~~~ 94 (104)
T 1wex_A 85 FNYSTSKRIT 94 (104)
T ss_dssp EEECSSSSCC
T ss_pred EEEccCcccc
Confidence 9999877654
No 108
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=7.2e-20 Score=112.09 Aligned_cols=82 Identities=16% Similarity=0.303 Sum_probs=76.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEE
Q 032702 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVE 112 (135)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 112 (135)
......+|||+|||+++++++|+++|..||.|..+.++.++. +.++|+|||+|.+.++|..|+. +++..+.|+.|.|.
T Consensus 7 ~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~ 84 (103)
T 1s79_A 7 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLIL 84 (103)
T ss_dssp SCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEE
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEE
Confidence 445668999999999999999999999999999999999965 8999999999999999999999 89999999999999
Q ss_pred eeCC
Q 032702 113 YAKP 116 (135)
Q Consensus 113 ~a~~ 116 (135)
++..
T Consensus 85 ~~~~ 88 (103)
T 1s79_A 85 FKDD 88 (103)
T ss_dssp EHHH
T ss_pred EchH
Confidence 8754
No 109
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.7e-18 Score=105.02 Aligned_cols=82 Identities=29% Similarity=0.482 Sum_probs=73.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhcc--CCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEE
Q 032702 32 PQAEPSTNLFVSGLSKRTTDETLRDTFSAF--GEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVI 109 (135)
Q Consensus 32 ~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~--g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l 109 (135)
....+.++|||+|||+++++++|+++|..| |.|..+.+. +++|||+|.+.++|.+|+..|++..+.|+.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (99)
T 2cpd_A 10 DTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPI 81 (99)
T ss_dssp SCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEE
T ss_pred cccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 345667899999999999999999999999 899988764 3599999999999999999999999999999
Q ss_pred EEEeeCCCCCCC
Q 032702 110 FVEYAKPRQPPT 121 (135)
Q Consensus 110 ~v~~a~~~~~~~ 121 (135)
+|.+++++....
T Consensus 82 ~v~~a~~~~~~~ 93 (99)
T 2cpd_A 82 EVTLAKPVDKDS 93 (99)
T ss_dssp EEECCCCCCCCC
T ss_pred EEEECCCCCCCC
Confidence 999998876543
No 110
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.81 E-value=3.5e-20 Score=106.97 Aligned_cols=75 Identities=28% Similarity=0.468 Sum_probs=71.6
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEee
Q 032702 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYA 114 (135)
Q Consensus 39 ~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 114 (135)
+|||+|||+++++++|+++|..||.|..+.++.++.++.++|+|||+|.+.++|++|++ +++..+.|+.|.|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 58999999999999999999999999999999998889999999999999999999998 9999999999999875
No 111
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.81 E-value=3.6e-19 Score=108.04 Aligned_cols=80 Identities=18% Similarity=0.346 Sum_probs=72.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCce--eCCeEEE
Q 032702 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKF--LDGWVIF 110 (135)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~--~~g~~l~ 110 (135)
...++.+|||+|||+++++++|+++|.+||.|..+.+++. +|+|||+|.+.++|.+|+..|++.. +.|+.|.
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~ 90 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAF 90 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEE
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEE
Confidence 3456789999999999999999999999999999998753 5799999999999999999999875 7899999
Q ss_pred EEeeCCCC
Q 032702 111 VEYAKPRQ 118 (135)
Q Consensus 111 v~~a~~~~ 118 (135)
|++|++++
T Consensus 91 V~~S~~k~ 98 (100)
T 3r27_A 91 VNYSTSQK 98 (100)
T ss_dssp EEECSCSC
T ss_pred EEeccccc
Confidence 99998765
No 112
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.81 E-value=1.4e-18 Score=107.32 Aligned_cols=80 Identities=24% Similarity=0.489 Sum_probs=72.1
Q ss_pred CCCCCCeEEEcCCCCC-CCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEE
Q 032702 33 QAEPSTNLFVSGLSKR-TTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFV 111 (135)
Q Consensus 33 ~~~~~~~v~v~nlp~~-~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 111 (135)
+....++|||+|||++ +++++|+++|..||.|..+.+ .+++|||+|.+.++|+.|+..|++..+.|+.|+|
T Consensus 23 ~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 94 (110)
T 1wf1_A 23 PKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDI 94 (110)
T ss_dssp CTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCE
T ss_pred CCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 3345689999999999 999999999999999999988 3579999999999999999999999999999999
Q ss_pred EeeCCCCCC
Q 032702 112 EYAKPRQPP 120 (135)
Q Consensus 112 ~~a~~~~~~ 120 (135)
.++++....
T Consensus 95 ~~a~~~~~~ 103 (110)
T 1wf1_A 95 NMAGEPKPD 103 (110)
T ss_dssp EESCCCCSC
T ss_pred EECCCCCCC
Confidence 999865543
No 113
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.81 E-value=2.6e-19 Score=113.44 Aligned_cols=85 Identities=20% Similarity=0.370 Sum_probs=75.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHH----HHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeE
Q 032702 33 QAEPSTNLFVSGLSKRTTDETLR----DTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWV 108 (135)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~----~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~ 108 (135)
...+..+|||+|||+.+++++|+ ++|.+||.|..+.+. .++.++|||||+|.+.++|..|+..|+|..+.|+.
T Consensus 25 ~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~---~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~ 101 (127)
T 2a3j_A 25 HTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVD---LSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNP 101 (127)
T ss_dssp CCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEEC---CCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEec---cCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCE
Confidence 34557899999999999999876 689999999998774 36788999999999999999999999999999999
Q ss_pred EEEEeeCCCCCC
Q 032702 109 IFVEYAKPRQPP 120 (135)
Q Consensus 109 l~v~~a~~~~~~ 120 (135)
|+|.+++.+...
T Consensus 102 l~V~~a~~~~~~ 113 (127)
T 2a3j_A 102 LVITFSETPQSQ 113 (127)
T ss_dssp CEEEECCCCCHH
T ss_pred EEEEEccCcchh
Confidence 999999877653
No 114
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.81 E-value=2e-19 Score=108.41 Aligned_cols=84 Identities=21% Similarity=0.378 Sum_probs=75.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEE
Q 032702 32 PQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFV 111 (135)
Q Consensus 32 ~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 111 (135)
....+..+|||+|||..+++++|+++|..||.|..+ ..++.++|+|||+|.+.++|..|+..|++..+.|+.|+|
T Consensus 11 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 85 (96)
T 1fjc_A 11 KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSL 85 (96)
T ss_dssp STTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 445667899999999999999999999999987665 257889999999999999999999999999999999999
Q ss_pred EeeCCCCCC
Q 032702 112 EYAKPRQPP 120 (135)
Q Consensus 112 ~~a~~~~~~ 120 (135)
.++.++...
T Consensus 86 ~~a~~~~~~ 94 (96)
T 1fjc_A 86 YYTGEKGGT 94 (96)
T ss_dssp EECSSSCCC
T ss_pred EEcCCCCCC
Confidence 999887654
No 115
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.81 E-value=5.6e-19 Score=117.80 Aligned_cols=85 Identities=27% Similarity=0.364 Sum_probs=79.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEe
Q 032702 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEY 113 (135)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 113 (135)
....++|||+|||+++++++|+++|..||.|..+.+..+. ++.++|+|||+|.+.++|.+|++.|++..+.|+.|+|++
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456899999999999999999999999999999999986 899999999999999999999999999999999999999
Q ss_pred eCCCCC
Q 032702 114 AKPRQP 119 (135)
Q Consensus 114 a~~~~~ 119 (135)
+.....
T Consensus 164 a~~~~~ 169 (177)
T 2f3j_A 164 VASQID 169 (177)
T ss_dssp ESSGGG
T ss_pred ecCCCC
Confidence 976543
No 116
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.81 E-value=1.4e-19 Score=109.32 Aligned_cols=84 Identities=21% Similarity=0.450 Sum_probs=75.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHH----HHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeE
Q 032702 33 QAEPSTNLFVSGLSKRTTDETLR----DTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWV 108 (135)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~----~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~ 108 (135)
+..+..+|||+|||.++++++|+ ++|..||.|..+.+.. ++.++|+|||+|.+.++|..|+..|++..+.|+.
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 80 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcE
Confidence 34567899999999999999999 9999999999998863 4667899999999999999999999999999999
Q ss_pred EEEEeeCCCCC
Q 032702 109 IFVEYAKPRQP 119 (135)
Q Consensus 109 l~v~~a~~~~~ 119 (135)
|+|.+++++..
T Consensus 81 l~v~~a~~~~~ 91 (97)
T 1nu4_A 81 MRIQYAKTDSD 91 (97)
T ss_dssp CEEEECSSCCT
T ss_pred EEEEEccCCCc
Confidence 99999988654
No 117
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.80 E-value=5.7e-19 Score=120.68 Aligned_cols=84 Identities=19% Similarity=0.393 Sum_probs=78.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEee
Q 032702 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYA 114 (135)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 114 (135)
.+.++|||+|||+++++++|+++|.+||.|..+.++.++.+++++|+|||+|.+.++|.+|+..+++..+.|+.|++.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 45679999999999999999999999999999999999899999999999999999999999999999999999999998
Q ss_pred CCCC
Q 032702 115 KPRQ 118 (135)
Q Consensus 115 ~~~~ 118 (135)
....
T Consensus 93 ~~~~ 96 (213)
T 4f02_A 93 QRDP 96 (213)
T ss_dssp CCCT
T ss_pred cccc
Confidence 7654
No 118
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=5.1e-20 Score=106.71 Aligned_cols=76 Identities=33% Similarity=0.505 Sum_probs=72.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEee
Q 032702 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYA 114 (135)
Q Consensus 38 ~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 114 (135)
++|||+|||.++++++|+++|.+||.|..+.++.++.++.++|+|||+|.+.++|++|+..++ ..+.|+.|+|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999998889999999999999999999999999 8899999999987
No 119
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.80 E-value=1.6e-20 Score=112.05 Aligned_cols=82 Identities=33% Similarity=0.543 Sum_probs=73.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEeeCCC
Q 032702 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKPR 117 (135)
Q Consensus 38 ~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~ 117 (135)
++|||+|||.++++++|+++|..||.|..+.++.++.++.++|+|||+|.+.+ |..|+..|++..+.|+.|+|.+|.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 48999999999999999999999999999999999888999999999999999 99999999999999999999999876
Q ss_pred CCC
Q 032702 118 QPP 120 (135)
Q Consensus 118 ~~~ 120 (135)
...
T Consensus 81 ~~~ 83 (90)
T 2ki2_A 81 KSL 83 (90)
T ss_dssp ---
T ss_pred CCC
Confidence 654
No 120
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.80 E-value=2.6e-19 Score=110.95 Aligned_cols=82 Identities=18% Similarity=0.215 Sum_probs=71.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccC-CeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEE
Q 032702 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFG-EVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVE 112 (135)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 112 (135)
.....+|||+|||+++++++|+++|..|| .|..+.+... .++|||||+|.+.++|++|++.|++..+.|+.|+|.
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~ 100 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVE 100 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 34567999999999999999999999999 8999887532 467899999999999999999999999999999999
Q ss_pred eeCCCCC
Q 032702 113 YAKPRQP 119 (135)
Q Consensus 113 ~a~~~~~ 119 (135)
++...+.
T Consensus 101 ~a~~~p~ 107 (111)
T 2jvr_A 101 RDDNPPP 107 (111)
T ss_dssp ESCC---
T ss_pred ECCCCCC
Confidence 9976543
No 121
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=4.7e-19 Score=106.82 Aligned_cols=83 Identities=17% Similarity=0.289 Sum_probs=74.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEE-EEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEE
Q 032702 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHA-KIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFV 111 (135)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~-~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 111 (135)
.....++|||+|||+++++++|+++|..||.|..+ .++.++.++ .|||+|.+.++|..|+..|++..+.|+.|+|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 86 (96)
T 2e44_A 11 KRQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKV 86 (96)
T ss_dssp CCCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred CCCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 34556899999999999999999999999999999 477775544 3999999999999999999999999999999
Q ss_pred EeeCCCCC
Q 032702 112 EYAKPRQP 119 (135)
Q Consensus 112 ~~a~~~~~ 119 (135)
.++.++..
T Consensus 87 ~~a~~~~~ 94 (96)
T 2e44_A 87 AYIPDEMA 94 (96)
T ss_dssp EECCCCCS
T ss_pred EEcCcccc
Confidence 99998854
No 122
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.80 E-value=3e-18 Score=115.13 Aligned_cols=86 Identities=26% Similarity=0.549 Sum_probs=81.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEe
Q 032702 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEY 113 (135)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 113 (135)
.....+|||+|||.++++++|+++|..||.|..+.+..++.++.++|+|||+|.+.++|.+|+..|++..+.|+.|+|.+
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 190 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 190 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 46678999999999999999999999999999999999987999999999999999999999999999999999999999
Q ss_pred eCCCCC
Q 032702 114 AKPRQP 119 (135)
Q Consensus 114 a~~~~~ 119 (135)
++++..
T Consensus 191 a~~~~~ 196 (198)
T 2yh0_A 191 ASVGAK 196 (198)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 988754
No 123
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=4.9e-19 Score=109.36 Aligned_cols=81 Identities=20% Similarity=0.279 Sum_probs=73.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEe
Q 032702 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEY 113 (135)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 113 (135)
..+..+|||+|||+++++++|+++|..| .|..+.|+.++ +|+++|+|||+|.+.++|++|+ .+++..++|+.|.|..
T Consensus 13 ~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~ 89 (109)
T 2dnn_A 13 NPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDH-VGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSP 89 (109)
T ss_dssp CHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCT-TCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECC-CCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEE
Confidence 3456799999999999999999999999 89999999985 5999999999999999999999 5999999999999988
Q ss_pred eCCC
Q 032702 114 AKPR 117 (135)
Q Consensus 114 a~~~ 117 (135)
+..+
T Consensus 90 a~~~ 93 (109)
T 2dnn_A 90 ATER 93 (109)
T ss_dssp CCHH
T ss_pred CCcc
Confidence 8654
No 124
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.80 E-value=3.4e-19 Score=108.42 Aligned_cols=79 Identities=25% Similarity=0.450 Sum_probs=73.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEeeCCC
Q 032702 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKPR 117 (135)
Q Consensus 38 ~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~ 117 (135)
++|||+|||+++++++|+++|..||.|..+.++.+ ++|+|||+|.+.++|++|+..|++..+.|+.|+|.+++++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 47999999999999999999999999999998876 5689999999999999999999999999999999999887
Q ss_pred CCCC
Q 032702 118 QPPT 121 (135)
Q Consensus 118 ~~~~ 121 (135)
....
T Consensus 76 ~~~~ 79 (101)
T 2hvz_A 76 PRRS 79 (101)
T ss_dssp CCSS
T ss_pred CCcc
Confidence 7543
No 125
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.80 E-value=2.2e-19 Score=124.25 Aligned_cols=81 Identities=25% Similarity=0.395 Sum_probs=76.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccC--CeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEe
Q 032702 36 PSTNLFVSGLSKRTTDETLRDTFSAFG--EVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEY 113 (135)
Q Consensus 36 ~~~~v~v~nlp~~~~~~~l~~~f~~~g--~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 113 (135)
...+|||+|||+++++++|+++|..|| .|..+.|+.++.+++++|||||+|.+.++|++||+.|++..|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 999999999998999999999999999999999999999999999999999
Q ss_pred eCC
Q 032702 114 AKP 116 (135)
Q Consensus 114 a~~ 116 (135)
+++
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 864
No 126
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.80 E-value=2.4e-19 Score=114.81 Aligned_cols=84 Identities=18% Similarity=0.196 Sum_probs=77.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCC---eEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeE
Q 032702 32 PQAEPSTNLFVSGLSKRTTDETLRDTFSAFGE---VVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWV 108 (135)
Q Consensus 32 ~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~---i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~ 108 (135)
+...+.++|||+|||+++++++|+++|..||. |..+.++.++. |+++|+|||+|.+.++|++|++ +++..+.|+.
T Consensus 39 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~ 116 (136)
T 2hgl_A 39 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRY 116 (136)
T ss_dssp SSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEE
Confidence 34466789999999999999999999999998 88999999965 9999999999999999999999 9999999999
Q ss_pred EEEEeeCCC
Q 032702 109 IFVEYAKPR 117 (135)
Q Consensus 109 l~v~~a~~~ 117 (135)
|.|.++.++
T Consensus 117 i~V~~a~~~ 125 (136)
T 2hgl_A 117 IEVFKSHRT 125 (136)
T ss_dssp EEEEECCHH
T ss_pred EEEEECChH
Confidence 999998654
No 127
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.79 E-value=4.6e-19 Score=107.84 Aligned_cols=79 Identities=24% Similarity=0.347 Sum_probs=71.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEE
Q 032702 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVE 112 (135)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 112 (135)
.....++|||+|||.++++++|+++|..||.|..+.+.. .+|||||+|.+.++|..|+..|++..+.|+.|+|.
T Consensus 23 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 96 (101)
T 2la4_A 23 APPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTG 96 (101)
T ss_dssp SCSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCC
T ss_pred CCCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 334568999999999999999999999999999998873 46799999999999999999999999999999999
Q ss_pred eeCCC
Q 032702 113 YAKPR 117 (135)
Q Consensus 113 ~a~~~ 117 (135)
+++++
T Consensus 97 ~a~~~ 101 (101)
T 2la4_A 97 WGKER 101 (101)
T ss_dssp BCCCC
T ss_pred eccCC
Confidence 99864
No 128
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.67 E-value=4.7e-21 Score=119.54 Aligned_cols=89 Identities=29% Similarity=0.391 Sum_probs=82.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEE--------EEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeC
Q 032702 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVH--------AKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLD 105 (135)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~--------~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~ 105 (135)
..+..+|||+|||.++++++|+++|..||.|.. +.++.++.++..+|||||+|.+.++|.+|+..|++..+.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 456789999999999999999999999999988 889988888999999999999999999999999999999
Q ss_pred CeEEEEEeeCCCCCCCC
Q 032702 106 GWVIFVEYAKPRQPPTL 122 (135)
Q Consensus 106 g~~l~v~~a~~~~~~~~ 122 (135)
|+.|+|.++.++.....
T Consensus 84 g~~l~V~~a~~~~~~~~ 100 (116)
T 2lcw_A 84 GNPIKVSFATRRADFNR 100 (116)
Confidence 99999999998876543
No 129
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=5.9e-18 Score=102.23 Aligned_cols=83 Identities=23% Similarity=0.401 Sum_probs=73.3
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEE
Q 032702 32 PQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFV 111 (135)
Q Consensus 32 ~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 111 (135)
....+.++|||+|+ ++++++|+++|..||.|..+.+. ..+|+|||+|.+.++|.+|+..|++..+.|+.|+|
T Consensus 10 ~~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v 81 (97)
T 1x5p_A 10 RAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKV 81 (97)
T ss_dssp CCCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 34456789999996 89999999999999999999884 35679999999999999999999999999999999
Q ss_pred EeeCCCCCCCC
Q 032702 112 EYAKPRQPPTL 122 (135)
Q Consensus 112 ~~a~~~~~~~~ 122 (135)
.+++++.....
T Consensus 82 ~~a~~~~~~~~ 92 (97)
T 1x5p_A 82 NIARKQPMLDS 92 (97)
T ss_dssp ECCSSCCCCCS
T ss_pred EECCCCCCCCC
Confidence 99988766443
No 130
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.79 E-value=1.2e-18 Score=102.73 Aligned_cols=75 Identities=27% Similarity=0.306 Sum_probs=69.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEee
Q 032702 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYA 114 (135)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 114 (135)
..+.-|||+||++.+++++|+++|.+||.|..+.+.. ++|||||+|.+.++|.+|++.||+..+.|+.|+|.+|
T Consensus 5 ~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 3466899999999999999999999999999999865 4689999999999999999999999999999999998
Q ss_pred C
Q 032702 115 K 115 (135)
Q Consensus 115 ~ 115 (135)
.
T Consensus 79 ~ 79 (89)
T 2wbr_A 79 S 79 (89)
T ss_dssp C
T ss_pred C
Confidence 3
No 131
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=1.9e-18 Score=101.87 Aligned_cols=77 Identities=29% Similarity=0.516 Sum_probs=70.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhh-CCceeCCeEEEE
Q 032702 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM-DGKFLDGWVIFV 111 (135)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l-~~~~~~g~~l~v 111 (135)
.+....+|||+|||.++++++|+++|.+||.|..+.+..+ +|+|||+|.+.++|..|+..| ++..+.|+.|+|
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v 81 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNV 81 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCE
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEE
Confidence 4456789999999999999999999999999999998764 579999999999999999999 999999999999
Q ss_pred EeeC
Q 032702 112 EYAK 115 (135)
Q Consensus 112 ~~a~ 115 (135)
++++
T Consensus 82 ~~ak 85 (85)
T 2ytc_A 82 KWGR 85 (85)
T ss_dssp EECC
T ss_pred EecC
Confidence 9985
No 132
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.79 E-value=2.3e-18 Score=128.93 Aligned_cols=86 Identities=27% Similarity=0.513 Sum_probs=80.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEe
Q 032702 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEY 113 (135)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 113 (135)
..+..+|||+|||+.+++++|.++|..||.|..|.|+.+..++.++|||||+|.+.++|.+||..||+..|.|+.|.|.+
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34557999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred eCCCCC
Q 032702 114 AKPRQP 119 (135)
Q Consensus 114 a~~~~~ 119 (135)
+.+...
T Consensus 179 a~~~~~ 184 (437)
T 3pgw_S 179 ERGRTV 184 (437)
T ss_pred eCCCCC
Confidence 987654
No 133
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.79 E-value=9e-20 Score=112.27 Aligned_cols=86 Identities=15% Similarity=0.158 Sum_probs=78.0
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCC---eEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCe
Q 032702 31 RPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGE---VVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGW 107 (135)
Q Consensus 31 ~~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~---i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~ 107 (135)
.......++|||+|||+++++++|+++|..||. |..+.++.++. |+++|+|||+|.+.++|.+|+. +++..++|+
T Consensus 5 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr 82 (107)
T 2lmi_A 5 EEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQR 82 (107)
T ss_dssp CCCCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSS
T ss_pred cCCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCe
Confidence 344567789999999999999999999999887 89999999865 9999999999999999999999 999999999
Q ss_pred EEEEEeeCCCC
Q 032702 108 VIFVEYAKPRQ 118 (135)
Q Consensus 108 ~l~v~~a~~~~ 118 (135)
.|+|.++.++.
T Consensus 83 ~i~V~~a~~~~ 93 (107)
T 2lmi_A 83 YVEVYEINNED 93 (107)
T ss_dssp CCCCEECCHHH
T ss_pred EEEEEECCHHH
Confidence 99999987644
No 134
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.79 E-value=3.6e-18 Score=111.55 Aligned_cols=84 Identities=30% Similarity=0.588 Sum_probs=79.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEE
Q 032702 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVE 112 (135)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 112 (135)
...+..+|||+|||..+++++|+++|..||.|..+.+..+..++.++|+|||+|.+.++|.+|+..|++..+.|+.|+|.
T Consensus 83 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 162 (166)
T 3md3_A 83 SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRIN 162 (166)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Confidence 44567799999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred eeCC
Q 032702 113 YAKP 116 (135)
Q Consensus 113 ~a~~ 116 (135)
+|+.
T Consensus 163 ~a~~ 166 (166)
T 3md3_A 163 WAAK 166 (166)
T ss_dssp ESCC
T ss_pred ecCC
Confidence 9863
No 135
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=3.3e-18 Score=102.81 Aligned_cols=82 Identities=22% Similarity=0.356 Sum_probs=72.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEee
Q 032702 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYA 114 (135)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 114 (135)
....+|||+|||+++++++|+++|..||.|..+ +.++.++. ||||+|.+.++|.+|+. |++..+.|+.|.|.++
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPR 79 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEEC
Confidence 455799999999999999999999999999987 55555555 99999999999999999 9999999999999999
Q ss_pred CCCCCCCC
Q 032702 115 KPRQPPTL 122 (135)
Q Consensus 115 ~~~~~~~~ 122 (135)
.++.....
T Consensus 80 ~~~~~~~~ 87 (94)
T 2e5g_A 80 EQKEFQSP 87 (94)
T ss_dssp CCSCCCCC
T ss_pred CcCCCCCC
Confidence 77665433
No 136
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.2e-18 Score=104.49 Aligned_cols=80 Identities=25% Similarity=0.414 Sum_probs=70.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCC-eEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCC-ceeCCeEEEEE
Q 032702 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGE-VVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDG-KFLDGWVIFVE 112 (135)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~g~-i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~-~~~~g~~l~v~ 112 (135)
.+.++|||+|||.++++++|+++|.+||. +..+.+. .+|+|||+|.+.++|++|+..|++ ..+.|+.|+|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 45679999999999999999999999998 6555552 357999999999999999999999 99999999999
Q ss_pred eeCCCCCCC
Q 032702 113 YAKPRQPPT 121 (135)
Q Consensus 113 ~a~~~~~~~ 121 (135)
+++++..+.
T Consensus 79 ~a~~~~~~~ 87 (93)
T 2cqh_A 79 YSVSKKLRS 87 (93)
T ss_dssp ECCCCCCCC
T ss_pred EccCccccC
Confidence 998876643
No 137
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.79 E-value=1.1e-18 Score=108.43 Aligned_cols=82 Identities=20% Similarity=0.378 Sum_probs=74.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEee
Q 032702 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYA 114 (135)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 114 (135)
.+..+|||+|||.++++++|+++|..||.|..+.++.+ +..+|+|||+|.+.++|.+|+..|++..+.|+.|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 45679999999999999999999999999999999865 445899999999999999999999999999999999999
Q ss_pred CCCCC
Q 032702 115 KPRQP 119 (135)
Q Consensus 115 ~~~~~ 119 (135)
.++..
T Consensus 83 ~~~~~ 87 (115)
T 3lqv_A 83 NANRA 87 (115)
T ss_dssp CHHHH
T ss_pred cCChh
Confidence 86543
No 138
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.78 E-value=3.5e-19 Score=108.56 Aligned_cols=85 Identities=27% Similarity=0.428 Sum_probs=77.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEE
Q 032702 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVE 112 (135)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 112 (135)
.....++|||+|||+++++++|+++|..||.|..+.++.++ ++..+|+|||+|.+.++|++|+. ++..+.|+.|.|.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~ 81 (102)
T 2xs2_A 5 GKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLG 81 (102)
T ss_dssp CEEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEE
Confidence 34556899999999999999999999999999999999997 89999999999999999999998 8889999999999
Q ss_pred eeCCCCCC
Q 032702 113 YAKPRQPP 120 (135)
Q Consensus 113 ~a~~~~~~ 120 (135)
++.++...
T Consensus 82 ~a~~~~~~ 89 (102)
T 2xs2_A 82 PAIRKQNL 89 (102)
T ss_dssp EEEECC--
T ss_pred ECCcCcch
Confidence 99876653
No 139
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.78 E-value=4e-18 Score=111.41 Aligned_cols=83 Identities=37% Similarity=0.595 Sum_probs=78.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEeeCC
Q 032702 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKP 116 (135)
Q Consensus 37 ~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~ 116 (135)
.++|||+|||+++++++|+++|..||.|..+.++.++.++.++|+|||+|.+.++|..|++.|++..+.|+.|+|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 57999999999999999999999999999999999988999999999999999999999999999999999999999987
Q ss_pred CCC
Q 032702 117 RQP 119 (135)
Q Consensus 117 ~~~ 119 (135)
...
T Consensus 82 ~~~ 84 (167)
T 1fxl_A 82 SSA 84 (167)
T ss_dssp CCG
T ss_pred Ccc
Confidence 654
No 140
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.78 E-value=2.4e-18 Score=112.72 Aligned_cols=84 Identities=30% Similarity=0.506 Sum_probs=79.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEeeC
Q 032702 36 PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAK 115 (135)
Q Consensus 36 ~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 115 (135)
+.++|||+|||+++++++|+++|..||.|..+.++.++.++.++|+|||+|.+.++|..|++.|++..+.|+.|+|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 46799999999999999999999999999999999998899999999999999999999999999999999999999998
Q ss_pred CCCC
Q 032702 116 PRQP 119 (135)
Q Consensus 116 ~~~~ 119 (135)
+...
T Consensus 82 ~~~~ 85 (168)
T 1b7f_A 82 PGGE 85 (168)
T ss_dssp CCSS
T ss_pred CCcc
Confidence 7654
No 141
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.78 E-value=7.1e-19 Score=106.17 Aligned_cols=82 Identities=23% Similarity=0.466 Sum_probs=71.4
Q ss_pred CCCCCCeEEEcCCCC-CCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEE
Q 032702 33 QAEPSTNLFVSGLSK-RTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFV 111 (135)
Q Consensus 33 ~~~~~~~v~v~nlp~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 111 (135)
...+.++|||+|||+ ++++++|+++|..||.|..+.+. +|+|||+|.+.++|..|+..|++..+.|+.|+|
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 77 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLIL 77 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCE
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 345678999999998 99999999999999999999884 469999999999999999999999999999999
Q ss_pred EeeCCCCCCCC
Q 032702 112 EYAKPRQPPTL 122 (135)
Q Consensus 112 ~~a~~~~~~~~ 122 (135)
.++++...+..
T Consensus 78 ~~a~~~~~~~~ 88 (96)
T 2kvi_A 78 EVSSSNARPQF 88 (96)
T ss_dssp EEEECCCC---
T ss_pred EEcCcCCCCCC
Confidence 99987766543
No 142
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.78 E-value=3.3e-19 Score=104.41 Aligned_cols=72 Identities=26% Similarity=0.417 Sum_probs=67.0
Q ss_pred CeEEEcCCCCCC------CHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCe-EEE
Q 032702 38 TNLFVSGLSKRT------TDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGW-VIF 110 (135)
Q Consensus 38 ~~v~v~nlp~~~------~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~-~l~ 110 (135)
++|||+|||..+ ++++|+++|.+||.|..+.++ +.+|.++|+|||+|.+.++|.+|+..|++..+.|+ .|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 689999999999 779999999999999999887 36889999999999999999999999999999998 887
Q ss_pred E
Q 032702 111 V 111 (135)
Q Consensus 111 v 111 (135)
|
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 6
No 143
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.78 E-value=1.8e-18 Score=112.28 Aligned_cols=82 Identities=21% Similarity=0.423 Sum_probs=75.3
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEE
Q 032702 32 PQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFV 111 (135)
Q Consensus 32 ~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 111 (135)
......++|||+|||+++++++|+++|..||.|..+.++.+ ++|||||+|.+.++|..|+..|++..+.|+.|+|
T Consensus 68 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 142 (150)
T 2i2y_A 68 DSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRV 142 (150)
T ss_dssp SSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 34566789999999999999999999999999999999876 4689999999999999999999999999999999
Q ss_pred EeeCCCC
Q 032702 112 EYAKPRQ 118 (135)
Q Consensus 112 ~~a~~~~ 118 (135)
.++++++
T Consensus 143 ~~a~~~~ 149 (150)
T 2i2y_A 143 ELSNGEK 149 (150)
T ss_dssp EECCCCC
T ss_pred EEcCCCC
Confidence 9998764
No 144
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.78 E-value=2e-19 Score=103.69 Aligned_cols=75 Identities=27% Similarity=0.423 Sum_probs=70.8
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEee
Q 032702 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYA 114 (135)
Q Consensus 39 ~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 114 (135)
+|||+|||+++++++|+++|..||.|..+.++.++.++.++|+|||+|.+.++|.+|+. +++..+.|+.|.|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 58999999999999999999999999999999998889999999999999999999999 4888999999999875
No 145
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=2e-18 Score=106.87 Aligned_cols=82 Identities=15% Similarity=0.237 Sum_probs=72.5
Q ss_pred CCCCCCeEEEcCCCCC-CCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCC--ceeCCeEE
Q 032702 33 QAEPSTNLFVSGLSKR-TTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDG--KFLDGWVI 109 (135)
Q Consensus 33 ~~~~~~~v~v~nlp~~-~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~--~~~~g~~l 109 (135)
...+..+|||+|||++ +++++|+++|.+||.|..+.++.. +|+|||+|.+.++|..|++.|++ ..+.|+.|
T Consensus 21 ~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l 94 (112)
T 1x4f_A 21 KQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKKALWFQGRCV 94 (112)
T ss_dssp SSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCC
T ss_pred cCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 3556789999999998 999999999999999999998643 57999999999999999998864 45899999
Q ss_pred EEEeeCCCCCC
Q 032702 110 FVEYAKPRQPP 120 (135)
Q Consensus 110 ~v~~a~~~~~~ 120 (135)
+|.+++.+...
T Consensus 95 ~V~~a~~~~~~ 105 (112)
T 1x4f_A 95 KVDLSEKYKKL 105 (112)
T ss_dssp EEEEECSCSSS
T ss_pred EEEECcccccc
Confidence 99999876654
No 146
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.77 E-value=3.8e-18 Score=111.86 Aligned_cols=82 Identities=21% Similarity=0.298 Sum_probs=72.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC--eEEEE
Q 032702 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDG--WVIFV 111 (135)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g--~~l~v 111 (135)
+.....|||+||++.+++++|+++|.+||.|.++.+.... .+++|||+|.+.++|+.|++.|+|..+.| +.|+|
T Consensus 43 ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V 118 (164)
T 1sjr_A 43 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 118 (164)
T ss_dssp CCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEE
T ss_pred CCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEE
Confidence 4455689999999999999999999999999999986432 46799999999999999999999999965 99999
Q ss_pred EeeCCCCC
Q 032702 112 EYAKPRQP 119 (135)
Q Consensus 112 ~~a~~~~~ 119 (135)
++++++..
T Consensus 119 ~~Ak~~~l 126 (164)
T 1sjr_A 119 DFSKLTSL 126 (164)
T ss_dssp EECSSSSC
T ss_pred EEecCCcc
Confidence 99998754
No 147
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.77 E-value=4.4e-18 Score=115.74 Aligned_cols=88 Identities=24% Similarity=0.473 Sum_probs=82.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEee
Q 032702 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYA 114 (135)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 114 (135)
....+|||+|||.++++++|+++|..||.|..+.+..+..++.++|+|||+|.+.++|.+|+..|++..+.|+.|+|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 45579999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred CCCCCCCC
Q 032702 115 KPRQPPTL 122 (135)
Q Consensus 115 ~~~~~~~~ 122 (135)
.+++.+..
T Consensus 203 ~~~~~~~~ 210 (216)
T 2qfj_A 203 VTPPMPLL 210 (216)
T ss_dssp SSCSSTTS
T ss_pred cCCCCCCC
Confidence 98876543
No 148
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.77 E-value=3.3e-19 Score=114.91 Aligned_cols=88 Identities=25% Similarity=0.430 Sum_probs=73.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEE------EEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCe
Q 032702 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHA------KIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGW 107 (135)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~------~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~ 107 (135)
..+.++|||+|||+++++++|+++|..||.|..+ .+.. ..++.++|||||+|.+.++|.+|+..|++..+.|+
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 120 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRL-MKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGK 120 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEE-EEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEe-ccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 4566899999999999999999999999988653 1111 14688899999999999999999999999999999
Q ss_pred EEEEEeeCCCCCCCC
Q 032702 108 VIFVEYAKPRQPPTL 122 (135)
Q Consensus 108 ~l~v~~a~~~~~~~~ 122 (135)
.|+|.++++......
T Consensus 121 ~l~V~~a~~~~~~~~ 135 (143)
T 3egn_A 121 PMVVQFARSARPKQD 135 (143)
T ss_dssp ECEEEECCCSCC---
T ss_pred EEEEEECCCCCCccC
Confidence 999999987665443
No 149
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.77 E-value=5.1e-18 Score=113.82 Aligned_cols=89 Identities=34% Similarity=0.562 Sum_probs=78.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEE
Q 032702 32 PQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFV 111 (135)
Q Consensus 32 ~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 111 (135)
....+.++|||+|||+++++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|.+|+.. ++..+.|+.|.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v 86 (196)
T 1l3k_A 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEP 86 (196)
T ss_dssp CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeee
Confidence 3456778999999999999999999999999999999999988899999999999999999999985 889999999999
Q ss_pred EeeCCCCCCC
Q 032702 112 EYAKPRQPPT 121 (135)
Q Consensus 112 ~~a~~~~~~~ 121 (135)
.++.+.....
T Consensus 87 ~~~~~~~~~~ 96 (196)
T 1l3k_A 87 KRAVSREDSQ 96 (196)
T ss_dssp EECCC-----
T ss_pred ecccCccccc
Confidence 9998765543
No 150
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.77 E-value=5.9e-18 Score=113.51 Aligned_cols=90 Identities=26% Similarity=0.419 Sum_probs=75.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEe
Q 032702 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEY 113 (135)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 113 (135)
.....+|||+|||.++++++|+++|..||.|..+.++.+..++.++|+|||+|.+.++|.+|+.. ++..+.|+.|.|.+
T Consensus 101 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~ 179 (196)
T 1l3k_A 101 HLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRK 179 (196)
T ss_dssp --CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEE
T ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEe
Confidence 34567999999999999999999999999999999999988899999999999999999999986 78999999999999
Q ss_pred eCCCCCCCCCC
Q 032702 114 AKPRQPPTLPS 124 (135)
Q Consensus 114 a~~~~~~~~~~ 124 (135)
+.++.......
T Consensus 180 a~~k~~~~~~~ 190 (196)
T 1l3k_A 180 ALSKQEMASAS 190 (196)
T ss_dssp CC---------
T ss_pred cCChhHhcccc
Confidence 99988765543
No 151
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.77 E-value=2.2e-19 Score=115.35 Aligned_cols=86 Identities=21% Similarity=0.222 Sum_probs=75.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEE
Q 032702 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVE 112 (135)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 112 (135)
......+|||+|||+++++++|+++|..|| +..+.++.++ +++++|+|||+|.+.++|++|+ .+++..+.++.|+|.
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~-~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~ 118 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGP-DGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELF 118 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSS-SSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECC-CCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEE
Confidence 345667999999999999999999999999 6699999986 4999999999999999999999 689999999999999
Q ss_pred eeCCCCCCC
Q 032702 113 YAKPRQPPT 121 (135)
Q Consensus 113 ~a~~~~~~~ 121 (135)
.+.++....
T Consensus 119 ~a~~~~~~~ 127 (139)
T 2hgn_A 119 LNSTTGASN 127 (139)
T ss_dssp ECCCSCC--
T ss_pred ECCCCCCCC
Confidence 998776543
No 152
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.76 E-value=1.1e-17 Score=110.02 Aligned_cols=81 Identities=27% Similarity=0.575 Sum_probs=76.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEee
Q 032702 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYA 114 (135)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 114 (135)
....+|||+|||.++++++|+++|..||.|..+.+..+..++.++|+|||+|.+.++|.+|+..|++..+.|+.|.|.+|
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 44789999999999999999999999999999999999889999999999999999999999999999999999999987
Q ss_pred C
Q 032702 115 K 115 (135)
Q Consensus 115 ~ 115 (135)
.
T Consensus 172 s 172 (172)
T 2g4b_A 172 S 172 (172)
T ss_dssp C
T ss_pred C
Confidence 3
No 153
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.76 E-value=3e-18 Score=106.75 Aligned_cols=79 Identities=25% Similarity=0.404 Sum_probs=67.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeE-----E
Q 032702 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWV-----I 109 (135)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~-----l 109 (135)
...++|||+|||+++++++|+++|..||.|..+.++.+ |||||+|.+.++|++|++.|++..+.|+. |
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 45689999999999999999999999999999998765 69999999999999999999999999988 7
Q ss_pred EEEeeCCCCCC
Q 032702 110 FVEYAKPRQPP 120 (135)
Q Consensus 110 ~v~~a~~~~~~ 120 (135)
+|..+.+....
T Consensus 87 ~v~~~~~~~~~ 97 (115)
T 3beg_B 87 RVKVDGPRSPS 97 (115)
T ss_dssp EEEECC----C
T ss_pred EeccCCCCCCC
Confidence 88777665543
No 154
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=1.6e-17 Score=98.96 Aligned_cols=79 Identities=18% Similarity=0.278 Sum_probs=69.0
Q ss_pred CCCCe-EEEcCCCCCCCHHH----HHHHhhccC-CeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeE
Q 032702 35 EPSTN-LFVSGLSKRTTDET----LRDTFSAFG-EVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWV 108 (135)
Q Consensus 35 ~~~~~-v~v~nlp~~~~~~~----l~~~f~~~g-~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~ 108 (135)
.+..+ |||+|||+.+++++ |+++|.+|| .|.++ ++ |+|||.|.+.++|.+|++.|++..+.|++
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~ 75 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNR 75 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSC
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCce
Confidence 34556 99999999999987 558999994 99887 33 89999999999999999999999999999
Q ss_pred EEEEeeCCCCCCCCC
Q 032702 109 IFVEYAKPRQPPTLP 123 (135)
Q Consensus 109 l~v~~a~~~~~~~~~ 123 (135)
|+|.+|+...+-...
T Consensus 76 i~v~~A~~~sd~~~~ 90 (96)
T 2diu_A 76 IIVSFTPKNRELCET 90 (96)
T ss_dssp CEEESSCCSCCCCCC
T ss_pred EEEEecCCCcceeEe
Confidence 999999988875443
No 155
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.75 E-value=2.6e-17 Score=104.19 Aligned_cols=81 Identities=22% Similarity=0.354 Sum_probs=72.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccE-EEEEeCCHHHHHHHHHhhCCceeCC--eEEE
Q 032702 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGF-GFVKYATLEAAGKAIEGMDGKFLDG--WVIF 110 (135)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~-afv~f~~~~~a~~a~~~l~~~~~~g--~~l~ 110 (135)
......|||+||++.+++++|+++|.+||.|.++.+... .+|+ |||+|.+.++|+.|++.|+|..+.| +.|+
T Consensus 25 ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~Lr 99 (130)
T 3zzy_A 25 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLR 99 (130)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEE
T ss_pred CCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEE
Confidence 345568889999999999999999999999999988754 2467 9999999999999999999999988 8999
Q ss_pred EEeeCCCCC
Q 032702 111 VEYAKPRQP 119 (135)
Q Consensus 111 v~~a~~~~~ 119 (135)
|++++++.-
T Consensus 100 I~~ak~~~l 108 (130)
T 3zzy_A 100 IDFSKLTSL 108 (130)
T ss_dssp EEECSCSSC
T ss_pred EEecCCCce
Confidence 999998754
No 156
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.75 E-value=1.8e-17 Score=98.43 Aligned_cols=78 Identities=17% Similarity=0.207 Sum_probs=71.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEee
Q 032702 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYA 114 (135)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 114 (135)
...++|||+|||+++++++|+++|.+| .|..+.+. .++|+|||+|.+.++|++|+..|++..+.|+.|+|+++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 346799999999999999999999999 89988874 46789999999999999999999999999999999999
Q ss_pred CCCCC
Q 032702 115 KPRQP 119 (135)
Q Consensus 115 ~~~~~ 119 (135)
.....
T Consensus 76 ~~~~~ 80 (88)
T 1wg1_A 76 PTDAL 80 (88)
T ss_dssp CCCCC
T ss_pred CCCce
Confidence 77654
No 157
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.75 E-value=2.9e-18 Score=108.34 Aligned_cols=82 Identities=24% Similarity=0.257 Sum_probs=73.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeE--EEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEE
Q 032702 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVV--HAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIF 110 (135)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~--~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~ 110 (135)
......+|||+|||+++++++|+++|..| .|. .+.++.++. |+++|+|||+|.+.++|++|++. ++..+.|+.|.
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~ 114 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKERIGHRYIE 114 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEE
Confidence 34566799999999999999999999999 676 899999865 99999999999999999999984 77889999999
Q ss_pred EEeeCCC
Q 032702 111 VEYAKPR 117 (135)
Q Consensus 111 v~~a~~~ 117 (135)
|..+.++
T Consensus 115 V~~a~~~ 121 (126)
T 2hgm_A 115 VFKSSQE 121 (126)
T ss_dssp CEEECHH
T ss_pred EEECCHH
Confidence 9988654
No 158
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.74 E-value=7.6e-17 Score=101.51 Aligned_cols=79 Identities=22% Similarity=0.301 Sum_probs=69.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccE-EEEEeCCHHHHHHHHHhhCCceeCC--eEEEE
Q 032702 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGF-GFVKYATLEAAGKAIEGMDGKFLDG--WVIFV 111 (135)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~-afv~f~~~~~a~~a~~~l~~~~~~g--~~l~v 111 (135)
.....|||+||++.+++++|+++|.+||.|..+.+... .|+ |||+|.+.++|..|++.|+|..+.| +.|+|
T Consensus 23 s~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V 96 (124)
T 2e5i_A 23 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKI 96 (124)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEE
T ss_pred CcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEE
Confidence 33456789999999999999999999999999988542 265 9999999999999999999999987 69999
Q ss_pred EeeCCCCC
Q 032702 112 EYAKPRQP 119 (135)
Q Consensus 112 ~~a~~~~~ 119 (135)
.+|+++..
T Consensus 97 ~~Ak~~~l 104 (124)
T 2e5i_A 97 EYARPTRL 104 (124)
T ss_dssp ECCSCSCC
T ss_pred EEecCCcc
Confidence 99998764
No 159
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=4.6e-18 Score=107.07 Aligned_cols=81 Identities=21% Similarity=0.178 Sum_probs=73.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCe----EEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEE
Q 032702 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEV----VHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIF 110 (135)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i----~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~ 110 (135)
.+..+|||+|||+++++++|+++|..||.| ..+.|+.+ .+|+++|+|||+|.+.++|++|++. ++..+.++.|.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 556899999999999999999999999875 68888888 5899999999999999999999995 99999999999
Q ss_pred EEeeCCC
Q 032702 111 VEYAKPR 117 (135)
Q Consensus 111 v~~a~~~ 117 (135)
|..+.++
T Consensus 99 V~~a~~~ 105 (123)
T 2dha_A 99 LFRSTAA 105 (123)
T ss_dssp CEEECHH
T ss_pred EEECCHH
Confidence 9988643
No 160
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.74 E-value=2.7e-17 Score=107.34 Aligned_cols=82 Identities=23% Similarity=0.434 Sum_probs=75.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEeeCCC
Q 032702 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKPR 117 (135)
Q Consensus 38 ~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~ 117 (135)
++|||+|||.++++++|+++|..||.|..+.++.++ ++.++|+|||+|.+.++|..|+..|++..+.|+.|.|.++.+.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 489999999999999999999999999999999885 5778999999999999999999999999999999999999776
Q ss_pred CCC
Q 032702 118 QPP 120 (135)
Q Consensus 118 ~~~ 120 (135)
...
T Consensus 80 ~~~ 82 (166)
T 3md3_A 80 QQS 82 (166)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 161
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=8.2e-18 Score=104.14 Aligned_cols=79 Identities=18% Similarity=0.223 Sum_probs=71.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEe
Q 032702 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEY 113 (135)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 113 (135)
....++|||+|||+++++++|+++|..||.|..+.++. .+++|||+|.+.++|+.|+..||+..+.|+.|+|.+
T Consensus 7 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 80 (111)
T 1whx_A 7 GRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEW 80 (111)
T ss_dssp SEEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34567999999999999999999999999999998764 457999999999999999999999999999999999
Q ss_pred eCCCC
Q 032702 114 AKPRQ 118 (135)
Q Consensus 114 a~~~~ 118 (135)
+....
T Consensus 81 a~~~~ 85 (111)
T 1whx_A 81 APIGV 85 (111)
T ss_dssp EETTT
T ss_pred CCCCc
Confidence 97543
No 162
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.74 E-value=9e-18 Score=105.40 Aligned_cols=78 Identities=22% Similarity=0.354 Sum_probs=71.0
Q ss_pred CeEEEcCC----CCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCC----HHH----HHHHHH--hhCCce
Q 032702 38 TNLFVSGL----SKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYAT----LEA----AGKAIE--GMDGKF 103 (135)
Q Consensus 38 ~~v~v~nl----p~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~----~~~----a~~a~~--~l~~~~ 103 (135)
..|||+|| |+.+++.+|+++|..||+|.++.++.|+.||.++|||||+|.+ .++ |.+|+. .+++..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 58999999 9999999999999999999999999999999999999999996 433 788888 789999
Q ss_pred eCCeEEEEEeeC
Q 032702 104 LDGWVIFVEYAK 115 (135)
Q Consensus 104 ~~g~~l~v~~a~ 115 (135)
++|+.|+|.+.+
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999999865
No 163
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.3e-17 Score=102.32 Aligned_cols=81 Identities=20% Similarity=0.319 Sum_probs=71.3
Q ss_pred CCCCCCeEEE--cCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCcee-----C
Q 032702 33 QAEPSTNLFV--SGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFL-----D 105 (135)
Q Consensus 33 ~~~~~~~v~v--~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~-----~ 105 (135)
...+..+||| +||++++++++|+++|.+||.|..+.+..+ +|||||+|.+.++|++|++.|||..+ .
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~ 94 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 94 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCC
Confidence 3345678999 779999999999999999999999887542 57999999999999999999999988 6
Q ss_pred CeEEEEEeeCCCCC
Q 032702 106 GWVIFVEYAKPRQP 119 (135)
Q Consensus 106 g~~l~v~~a~~~~~ 119 (135)
++.|.|.++...+.
T Consensus 95 g~~l~v~~a~~~p~ 108 (114)
T 2cq2_A 95 KITLYLNFVEKVQW 108 (114)
T ss_dssp EEECEEEEESCCCC
T ss_pred CcEEEEEecccCcc
Confidence 88999999986654
No 164
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.73 E-value=6.2e-18 Score=110.77 Aligned_cols=82 Identities=24% Similarity=0.521 Sum_probs=77.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEeeC
Q 032702 36 PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAK 115 (135)
Q Consensus 36 ~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 115 (135)
...+|||+|||.++++++|+++|..||.|..+.+..+..++.++|+|||+|.+.++|.+|++ +++..+.|+.|+|.++.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 45699999999999999999999999999999999988889999999999999999999998 89999999999999998
Q ss_pred CCC
Q 032702 116 PRQ 118 (135)
Q Consensus 116 ~~~ 118 (135)
+++
T Consensus 165 pk~ 167 (167)
T 2cjk_A 165 PRH 167 (167)
T ss_dssp CCC
T ss_pred CCC
Confidence 864
No 165
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.73 E-value=3.5e-17 Score=111.73 Aligned_cols=82 Identities=41% Similarity=0.666 Sum_probs=75.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEeeC
Q 032702 36 PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAK 115 (135)
Q Consensus 36 ~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 115 (135)
...+|||+|||+.+++++|+++|..||.|..+.++.+. +.++|+|||+|.+.++|.+|++.||+..+.|+.|+|.++.
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 179 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence 45689999999999999999999999999999999884 3478999999999999999999999999999999999998
Q ss_pred CCCC
Q 032702 116 PRQP 119 (135)
Q Consensus 116 ~~~~ 119 (135)
++..
T Consensus 180 ~~~~ 183 (213)
T 4f02_A 180 SRKE 183 (213)
T ss_dssp CHHH
T ss_pred CCcc
Confidence 7643
No 166
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.73 E-value=3.9e-17 Score=97.31 Aligned_cols=78 Identities=27% Similarity=0.465 Sum_probs=62.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCce--eCCeEEE
Q 032702 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKF--LDGWVIF 110 (135)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~--~~g~~l~ 110 (135)
...+..+|||+|||+++++++|+++|.+||.|.++.++.+ ++|||||+|.+.++|.+ +++.. +.|+.|.
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~ 77 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVH 77 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEE
Confidence 4566789999999999999999999999999999998764 67899999999999884 45554 5699999
Q ss_pred EEeeCCCCC
Q 032702 111 VEYAKPRQP 119 (135)
Q Consensus 111 v~~a~~~~~ 119 (135)
|.++.++..
T Consensus 78 v~~a~~k~~ 86 (89)
T 3d2w_A 78 ISNAEPKHN 86 (89)
T ss_dssp EEECC----
T ss_pred EEEcCCCCc
Confidence 999987654
No 167
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.73 E-value=6.4e-17 Score=105.92 Aligned_cols=81 Identities=30% Similarity=0.560 Sum_probs=75.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC--eEEEE
Q 032702 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDG--WVIFV 111 (135)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g--~~l~v 111 (135)
.....+|||+|||..+++++|+++|..||.|..+.+..+..++.++|+|||+|.+.++|.+|+..|++..+.| +.|+|
T Consensus 86 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V 165 (168)
T 1b7f_A 86 SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSV 165 (168)
T ss_dssp TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEE
Confidence 3456799999999999999999999999999999999997789999999999999999999999999999977 99999
Q ss_pred Eee
Q 032702 112 EYA 114 (135)
Q Consensus 112 ~~a 114 (135)
.+|
T Consensus 166 ~~A 168 (168)
T 1b7f_A 166 RLA 168 (168)
T ss_dssp EEC
T ss_pred EeC
Confidence 886
No 168
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.72 E-value=3e-17 Score=103.12 Aligned_cols=80 Identities=24% Similarity=0.428 Sum_probs=71.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEE
Q 032702 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVE 112 (135)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 112 (135)
...+..+|||+|+ ++++++|+++|..||.|..+.+. ..+|||||+|.+.++|.+|+..|++..+.|+.|+|.
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~ 106 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 106 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3456789999995 69999999999999999999885 356799999999999999999999999999999999
Q ss_pred eeCCCCCC
Q 032702 113 YAKPRQPP 120 (135)
Q Consensus 113 ~a~~~~~~ 120 (135)
+++++...
T Consensus 107 ~a~~~~~~ 114 (121)
T 2bz2_A 107 IARKQPML 114 (121)
T ss_dssp ECCSSCC-
T ss_pred EeCCCCCC
Confidence 99887654
No 169
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=7.4e-17 Score=100.20 Aligned_cols=79 Identities=22% Similarity=0.338 Sum_probs=66.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCC---CCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEE
Q 032702 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRES---GYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIF 110 (135)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~---~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~ 110 (135)
....++|||+|||+++++++|+++|.+||.|. +.++.+..+ |.++|||||+|.+.++|++|++.|+ .+.|+.|.
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~ 81 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYL 81 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEE
Confidence 34568999999999999999999999999999 777777666 7899999999999999999999883 25565555
Q ss_pred EEeeC
Q 032702 111 VEYAK 115 (135)
Q Consensus 111 v~~a~ 115 (135)
+..+.
T Consensus 82 ~~~~~ 86 (114)
T 2dnl_A 82 CVSSP 86 (114)
T ss_dssp EECCS
T ss_pred eccCC
Confidence 55443
No 170
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.72 E-value=5.7e-17 Score=110.35 Aligned_cols=79 Identities=25% Similarity=0.344 Sum_probs=72.3
Q ss_pred CCCCeEEEcCCC-CCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEe
Q 032702 35 EPSTNLFVSGLS-KRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEY 113 (135)
Q Consensus 35 ~~~~~v~v~nlp-~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 113 (135)
.++++|||+||| +.+++++|+++|..||.|..+.++.+ .+|+|||+|.+.++|+.|++.||+..+.|+.|+|.+
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 76 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCV 76 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 356799999999 89999999999999999999999765 368999999999999999999999999999999999
Q ss_pred eCCCC
Q 032702 114 AKPRQ 118 (135)
Q Consensus 114 a~~~~ 118 (135)
++...
T Consensus 77 s~~~~ 81 (205)
T 3tyt_A 77 SKQPA 81 (205)
T ss_dssp CSCSC
T ss_pred ccCCc
Confidence 97543
No 171
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.72 E-value=3.6e-17 Score=111.18 Aligned_cols=84 Identities=26% Similarity=0.381 Sum_probs=75.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEee
Q 032702 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYA 114 (135)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 114 (135)
.+.++|||+|||.++++++|+++|..||.|..+.++.+..++..+|+|||+|.+.++|.+|++.|++..+.|+.|+|.++
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 44679999999999999999999999999999999998888999999999999999999999999999999999999887
Q ss_pred CCCC
Q 032702 115 KPRQ 118 (135)
Q Consensus 115 ~~~~ 118 (135)
....
T Consensus 106 ~~~~ 109 (216)
T 2qfj_A 106 SNIG 109 (216)
T ss_dssp SCCG
T ss_pred CCcc
Confidence 6554
No 172
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3.7e-17 Score=97.00 Aligned_cols=80 Identities=25% Similarity=0.441 Sum_probs=67.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEee
Q 032702 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYA 114 (135)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 114 (135)
.+.++|||+|||+++++++|+++|..||.|..+.++.+ ++|||||+|.+.++|+++... ...+.++.|.|.++
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNA 75 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEec
Confidence 35689999999999999999999999999999998754 578999999999999764332 23468999999999
Q ss_pred CCCCCCC
Q 032702 115 KPRQPPT 121 (135)
Q Consensus 115 ~~~~~~~ 121 (135)
.++....
T Consensus 76 ~~~~~~~ 82 (88)
T 1wf0_A 76 EPKHNSN 82 (88)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 8877654
No 173
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.71 E-value=1.1e-16 Score=105.65 Aligned_cols=81 Identities=22% Similarity=0.400 Sum_probs=73.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEE
Q 032702 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVE 112 (135)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 112 (135)
......+|||+|||.++++++|+++|..||.|..+ ..++.++|+|||+|.+.++|.+|+..|++..+.|+.|+|.
T Consensus 95 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 169 (175)
T 1fje_B 95 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 169 (175)
T ss_dssp TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEE
T ss_pred ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567899999999999999999999999988766 3678899999999999999999999999999999999999
Q ss_pred eeCCCC
Q 032702 113 YAKPRQ 118 (135)
Q Consensus 113 ~a~~~~ 118 (135)
++.+++
T Consensus 170 ~a~~k~ 175 (175)
T 1fje_B 170 YTGEKG 175 (175)
T ss_dssp ECSSCC
T ss_pred ecCCCC
Confidence 998763
No 174
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.71 E-value=9.9e-17 Score=104.74 Aligned_cols=80 Identities=34% Similarity=0.637 Sum_probs=74.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeE--EEEE
Q 032702 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWV--IFVE 112 (135)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~--l~v~ 112 (135)
....+|||+|||..+++++|+++|..||.|..+.+..+..++.++|+|||+|.+.++|.+|+..|++..+.|+. |+|.
T Consensus 86 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~ 165 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVK 165 (167)
T ss_dssp GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEE
Confidence 45678999999999999999999999999999999998888999999999999999999999999999999965 8887
Q ss_pred ee
Q 032702 113 YA 114 (135)
Q Consensus 113 ~a 114 (135)
||
T Consensus 166 ~A 167 (167)
T 1fxl_A 166 FA 167 (167)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 175
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.71 E-value=1.5e-16 Score=112.48 Aligned_cols=85 Identities=22% Similarity=0.476 Sum_probs=76.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHH----HHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCe
Q 032702 32 PQAEPSTNLFVSGLSKRTTDETLR----DTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGW 107 (135)
Q Consensus 32 ~~~~~~~~v~v~nlp~~~~~~~l~----~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~ 107 (135)
++..+.++|||+|||.++++++|+ ++|..||.|..+.++. +++.+|||||+|.+.++|.+|++.|++..+.|+
T Consensus 4 ~~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 80 (282)
T 3pgw_A 4 PETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK 80 (282)
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCc
Confidence 345668899999999999999966 8999999999998874 677899999999999999999999999999999
Q ss_pred EEEEEeeCCCCC
Q 032702 108 VIFVEYAKPRQP 119 (135)
Q Consensus 108 ~l~v~~a~~~~~ 119 (135)
.|+|.+++....
T Consensus 81 ~l~v~~a~~~~~ 92 (282)
T 3pgw_A 81 PMRIQYAKTDSD 92 (282)
T ss_pred EEEEEEeccCcc
Confidence 999999976553
No 176
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.70 E-value=9.2e-17 Score=94.88 Aligned_cols=72 Identities=24% Similarity=0.490 Sum_probs=66.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcc----C-------CeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCce
Q 032702 35 EPSTNLFVSGLSKRTTDETLRDTFSAF----G-------EVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKF 103 (135)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~----g-------~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 103 (135)
.+.++|||+|||+++++++|+++|..| | .+..+.+..+ +|+|||+|.+.++|.+|+ .|++..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 456799999999999999999999999 8 8999988654 579999999999999999 999999
Q ss_pred eCCeEEEEEe
Q 032702 104 LDGWVIFVEY 113 (135)
Q Consensus 104 ~~g~~l~v~~ 113 (135)
+.|+.|+|+.
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999999974
No 177
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.70 E-value=1.2e-16 Score=105.18 Aligned_cols=81 Identities=30% Similarity=0.495 Sum_probs=74.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeC---CeEEE
Q 032702 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLD---GWVIF 110 (135)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~---g~~l~ 110 (135)
.....+|||+|||..+++++|+++|..||.|..+.++.+ .+|.++|+|||+|.+.++|.+|+..|++..+. +++|.
T Consensus 92 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~ 170 (175)
T 3nmr_A 92 AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRG-PDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMV 170 (175)
T ss_dssp CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC-TTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCE
T ss_pred cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEEC-CCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeE
Confidence 346779999999999999999999999999999999988 46889999999999999999999999998765 48999
Q ss_pred EEeeC
Q 032702 111 VEYAK 115 (135)
Q Consensus 111 v~~a~ 115 (135)
|.+|.
T Consensus 171 V~~ad 175 (175)
T 3nmr_A 171 VKFAD 175 (175)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99874
No 178
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.70 E-value=1.1e-16 Score=105.29 Aligned_cols=84 Identities=23% Similarity=0.354 Sum_probs=75.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCC--CcccEEEEEeCCHHHHHHHHHhhCCceeC---CeEEE
Q 032702 36 PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESG--YSKGFGFVKYATLEAAGKAIEGMDGKFLD---GWVIF 110 (135)
Q Consensus 36 ~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~--~~~g~afv~f~~~~~a~~a~~~l~~~~~~---g~~l~ 110 (135)
+.++|||+|||+++++++|+++|..||.|..+.++.++.++ .++|+|||+|.+.++|.+|++.|++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 46799999999999999999999999999999999997776 88999999999999999999999998765 67788
Q ss_pred EEeeCCCCC
Q 032702 111 VEYAKPRQP 119 (135)
Q Consensus 111 v~~a~~~~~ 119 (135)
+.++.+...
T Consensus 82 ~~~~~~~~~ 90 (175)
T 3nmr_A 82 MKPADSEKN 90 (175)
T ss_dssp EEECGGGCC
T ss_pred Ecccccccc
Confidence 888766554
No 179
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.69 E-value=1.2e-16 Score=104.66 Aligned_cols=80 Identities=35% Similarity=0.629 Sum_probs=73.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEeeC
Q 032702 36 PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAK 115 (135)
Q Consensus 36 ~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 115 (135)
+.++|||+|||+++++++|+++|..||.|..+.++.++.+|.++|+|||+|.+.++|..|+.. +..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 467999999999999999999999999999999999988999999999999999999999985 567899999998886
Q ss_pred CC
Q 032702 116 PR 117 (135)
Q Consensus 116 ~~ 117 (135)
++
T Consensus 80 ~~ 81 (167)
T 2cjk_A 80 PR 81 (167)
T ss_dssp CH
T ss_pred ch
Confidence 54
No 180
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.68 E-value=1.5e-16 Score=109.74 Aligned_cols=81 Identities=27% Similarity=0.346 Sum_probs=74.7
Q ss_pred CCCCCCCeEEEcCCCC-CCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEE
Q 032702 32 PQAEPSTNLFVSGLSK-RTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIF 110 (135)
Q Consensus 32 ~~~~~~~~v~v~nlp~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~ 110 (135)
....+.++|||+|||+ ++++++|+++|..||.|..+.++.++ +|+|||+|.+.++|.+|++.|++..+.|+.|.
T Consensus 29 ~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~ 103 (229)
T 2adc_A 29 LAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIR 103 (229)
T ss_dssp GGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 4456778999999999 99999999999999999999998774 67999999999999999999999999999999
Q ss_pred EEeeCCC
Q 032702 111 VEYAKPR 117 (135)
Q Consensus 111 v~~a~~~ 117 (135)
|.++.+.
T Consensus 104 v~~a~~~ 110 (229)
T 2adc_A 104 ITLSKHQ 110 (229)
T ss_dssp EECCSCC
T ss_pred EEEecCc
Confidence 9999865
No 181
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.68 E-value=2.3e-16 Score=112.01 Aligned_cols=85 Identities=19% Similarity=0.388 Sum_probs=76.8
Q ss_pred CCCCCCeEEEcCCCCC-CCHHHHHHHhhccCCeEEEEEeecCC-CCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEE
Q 032702 33 QAEPSTNLFVSGLSKR-TTDETLRDTFSAFGEVVHAKIVKHRE-SGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIF 110 (135)
Q Consensus 33 ~~~~~~~v~v~nlp~~-~~~~~l~~~f~~~g~i~~~~~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~ 110 (135)
......+|||+|||.. +++++|+++|..||.|..+.++.+.. |+.++|+|||+|.+.++|.+|+ .|++..+.|+.|.
T Consensus 206 ~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~ 284 (292)
T 2ghp_A 206 ATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREIS 284 (292)
T ss_dssp -CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEE
T ss_pred cCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEE
Confidence 3456789999999999 99999999999999999999988854 5889999999999999999999 9999999999999
Q ss_pred EEeeCCCC
Q 032702 111 VEYAKPRQ 118 (135)
Q Consensus 111 v~~a~~~~ 118 (135)
|.++.+++
T Consensus 285 V~~a~~k~ 292 (292)
T 2ghp_A 285 VSLADKKP 292 (292)
T ss_dssp EEECCCCC
T ss_pred EEEecCCC
Confidence 99998874
No 182
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.68 E-value=8.9e-16 Score=94.08 Aligned_cols=82 Identities=15% Similarity=0.281 Sum_probs=71.9
Q ss_pred CCCCeEEEcCCCC-----CCCHHHHHHHhhccCCeEEEEEeecCCC-CCcccEEEEEeCCHHHHHHHHHhhCCceeCCeE
Q 032702 35 EPSTNLFVSGLSK-----RTTDETLRDTFSAFGEVVHAKIVKHRES-GYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWV 108 (135)
Q Consensus 35 ~~~~~v~v~nlp~-----~~~~~~l~~~f~~~g~i~~~~~~~~~~~-~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~ 108 (135)
.++.+|+|.|+.. +-++++|++.|.+||.|..+.++.++.+ +.++|++||+|.+.++|.+|+..|||..+.|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4567999999863 2367899999999999999999987644 678999999999999999999999999999999
Q ss_pred EEEEeeCC
Q 032702 109 IFVEYAKP 116 (135)
Q Consensus 109 l~v~~a~~ 116 (135)
|.|.++..
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999864
No 183
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.68 E-value=4.8e-16 Score=104.89 Aligned_cols=79 Identities=15% Similarity=0.282 Sum_probs=72.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEeeC
Q 032702 36 PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAK 115 (135)
Q Consensus 36 ~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 115 (135)
..++|||+|||+++++++|+++|..||.|..+.+..+. ++..+|+|||+|.+.++|..|+..++ ..+.|+.|.|.+++
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKD 185 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhH
Confidence 45799999999999999999999999999999999884 68899999999999999999998665 58999999999876
Q ss_pred C
Q 032702 116 P 116 (135)
Q Consensus 116 ~ 116 (135)
.
T Consensus 186 ~ 186 (193)
T 2voo_A 186 D 186 (193)
T ss_dssp T
T ss_pred H
Confidence 4
No 184
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.67 E-value=8.6e-16 Score=108.64 Aligned_cols=85 Identities=25% Similarity=0.432 Sum_probs=79.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEeeC
Q 032702 36 PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAK 115 (135)
Q Consensus 36 ~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 115 (135)
...+|||+|||.++++++|+++|..||.|..+.++.+..+|.++|+|||+|.+.++|.+|+..|++..+.|+.|.|.++.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 44699999999999999999999999999999999998899999999999999999999999999999999999999998
Q ss_pred CCCCC
Q 032702 116 PRQPP 120 (135)
Q Consensus 116 ~~~~~ 120 (135)
+....
T Consensus 174 ~~~~~ 178 (284)
T 3smz_A 174 AGQLT 178 (284)
T ss_dssp GGGCC
T ss_pred CCCCC
Confidence 76543
No 185
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.67 E-value=5.5e-16 Score=109.66 Aligned_cols=87 Identities=26% Similarity=0.314 Sum_probs=80.1
Q ss_pred CCCCCCeEEEcCCCCCC-CHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEE
Q 032702 33 QAEPSTNLFVSGLSKRT-TDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFV 111 (135)
Q Consensus 33 ~~~~~~~v~v~nlp~~~-~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 111 (135)
......+|||+|||..+ ++++|+++|..||.|..+.++.+. +|.++|+|||+|.+.++|.+|+..|++..+.|+.|.|
T Consensus 180 ~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 258 (284)
T 3smz_A 180 ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRV 258 (284)
T ss_dssp TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEE
Confidence 33567899999999995 999999999999999999999884 7899999999999999999999999999999999999
Q ss_pred EeeCCCCCC
Q 032702 112 EYAKPRQPP 120 (135)
Q Consensus 112 ~~a~~~~~~ 120 (135)
.++.++..+
T Consensus 259 ~~a~~~~~~ 267 (284)
T 3smz_A 259 SFCAPGPPG 267 (284)
T ss_dssp EECCSSSCH
T ss_pred EEecCCCcc
Confidence 999887763
No 186
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.67 E-value=1.8e-15 Score=106.88 Aligned_cols=76 Identities=24% Similarity=0.408 Sum_probs=70.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeC-CeEEEEEe
Q 032702 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLD-GWVIFVEY 113 (135)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~-g~~l~v~~ 113 (135)
.+..+|||+|||.++++++|+++|..||.|..+.++.++ +|+|||+|.+.++|.+|+..|++..+. |+.|+|.|
T Consensus 205 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 279 (282)
T 3pgw_A 205 PPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISF 279 (282)
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEE
Confidence 456799999999999999999999999999999998653 479999999999999999999999999 99999999
Q ss_pred eC
Q 032702 114 AK 115 (135)
Q Consensus 114 a~ 115 (135)
++
T Consensus 280 ak 281 (282)
T 3pgw_A 280 AK 281 (282)
T ss_pred ec
Confidence 86
No 187
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.66 E-value=3.3e-16 Score=108.59 Aligned_cols=83 Identities=27% Similarity=0.446 Sum_probs=70.9
Q ss_pred CCCCCCeEEEcCCCCCC---------CHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCce
Q 032702 33 QAEPSTNLFVSGLSKRT---------TDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKF 103 (135)
Q Consensus 33 ~~~~~~~v~v~nlp~~~---------~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 103 (135)
......+|||+||+..+ ++++|+++|.+||.|..+.++.. +|+|||+|.+.++|+.|++.|++..
T Consensus 130 ~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~ 203 (240)
T 3u1l_A 130 FRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQT 203 (240)
T ss_dssp -CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCC
T ss_pred cccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCE
Confidence 35667899999999998 79999999999999999998754 5799999999999999999999999
Q ss_pred e------------CCeEEEEEeeCCCCCCC
Q 032702 104 L------------DGWVIFVEYAKPRQPPT 121 (135)
Q Consensus 104 ~------------~g~~l~v~~a~~~~~~~ 121 (135)
+ .|+.|.|.||+.++++.
T Consensus 204 l~~~~~~e~~~~~~gr~L~V~wA~~~pnp~ 233 (240)
T 3u1l_A 204 LLLPSDKEWDDRREGTGLLVKWANEDPDPA 233 (240)
T ss_dssp CCCTTSTTGGGGGGSCCCEEEECC------
T ss_pred EeccccccccccCCCCEEEEEEccCCCCHH
Confidence 9 89999999999887653
No 188
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=9.5e-15 Score=90.34 Aligned_cols=84 Identities=19% Similarity=0.277 Sum_probs=71.0
Q ss_pred CCCCCeEEEcCCCCCCC-----------HHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCc
Q 032702 34 AEPSTNLFVSGLSKRTT-----------DETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGK 102 (135)
Q Consensus 34 ~~~~~~v~v~nlp~~~~-----------~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~ 102 (135)
..+..+|+|.||..... +++|+++|.+||.|..+.+ .++. ++|+|||+|.+.++|.+|+..|++.
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~~---~~G~afV~f~~~~~A~~Ai~~lng~ 87 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDRH---PDGVASVSFRDPEEADYCIQTLDGR 87 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETTC---TTCEEEEECSCHHHHHHHHHHSTTC
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecCC---CCEEEEEEECCHHHHHHHHHHcCCC
Confidence 34677999999954433 5799999999999999965 4432 6899999999999999999999999
Q ss_pred eeCCeEEEEEeeCCCCCCC
Q 032702 103 FLDGWVIFVEYAKPRQPPT 121 (135)
Q Consensus 103 ~~~g~~l~v~~a~~~~~~~ 121 (135)
.+.|+.|+|.++.++....
T Consensus 88 ~~~gr~l~v~~a~~~~~~~ 106 (112)
T 2dit_A 88 WFGGRQITAQAWDGTTDYQ 106 (112)
T ss_dssp EETTEECEEEECCSCCCSS
T ss_pred EECCcEEEEEEeCCCCCcc
Confidence 9999999999998876543
No 189
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.64 E-value=1.3e-16 Score=105.33 Aligned_cols=86 Identities=24% Similarity=0.335 Sum_probs=73.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEE
Q 032702 32 PQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFV 111 (135)
Q Consensus 32 ~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 111 (135)
....+.++|||+|||.++++++|+++|..||.+.. .++.+..++.++|+|||+|.+.++|.+|++ |++..+.|+.|+|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v 85 (175)
T 1fje_B 8 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKL 85 (175)
T ss_dssp SSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEE
Confidence 34567789999999999999999999999986654 223333567889999999999999999995 9999999999999
Q ss_pred EeeCCCCC
Q 032702 112 EYAKPRQP 119 (135)
Q Consensus 112 ~~a~~~~~ 119 (135)
.++.+...
T Consensus 86 ~~~~~~~~ 93 (175)
T 1fje_B 86 EKPKGRDS 93 (175)
T ss_dssp ECCCCSSC
T ss_pred ecCCCccc
Confidence 99987654
No 190
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.62 E-value=4.5e-15 Score=104.14 Aligned_cols=82 Identities=24% Similarity=0.431 Sum_probs=73.7
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEE
Q 032702 30 QRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVI 109 (135)
Q Consensus 30 ~~~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l 109 (135)
......+.++|||+|||+++++++|+++|..||.|..+.+..+ +|+|||+|.+.++|..|+..|++..+.|+.|
T Consensus 15 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l 88 (261)
T 3sde_A 15 GEKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPL 88 (261)
T ss_dssp TCCSSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCcee
Confidence 3445567789999999999999999999999999999988643 5799999999999999999999999999999
Q ss_pred EEEeeCCC
Q 032702 110 FVEYAKPR 117 (135)
Q Consensus 110 ~v~~a~~~ 117 (135)
.|.++.+.
T Consensus 89 ~v~~a~~~ 96 (261)
T 3sde_A 89 RIRFATHG 96 (261)
T ss_dssp EEEECCCS
T ss_pred EeeecccC
Confidence 99999754
No 191
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.61 E-value=9.8e-16 Score=103.08 Aligned_cols=77 Identities=29% Similarity=0.382 Sum_probs=71.5
Q ss_pred CCeEEEcCCCC-CCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEeeC
Q 032702 37 STNLFVSGLSK-RTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAK 115 (135)
Q Consensus 37 ~~~v~v~nlp~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 115 (135)
.++|||+|||+ ++++++|+++|..||.|..+.++.++ +|+|||+|.+.++|..|+..|++..+.|+.|.|.++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 57999999999 99999999999999999999988763 6799999999999999999999999999999999998
Q ss_pred CCC
Q 032702 116 PRQ 118 (135)
Q Consensus 116 ~~~ 118 (135)
...
T Consensus 78 ~~~ 80 (198)
T 1qm9_A 78 HQN 80 (198)
T ss_dssp CCS
T ss_pred CCC
Confidence 653
No 192
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.61 E-value=6.4e-15 Score=99.05 Aligned_cols=78 Identities=22% Similarity=0.356 Sum_probs=71.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccC-CeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeC-CeEEEEE
Q 032702 35 EPSTNLFVSGLSKRTTDETLRDTFSAFG-EVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLD-GWVIFVE 112 (135)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~-g~~l~v~ 112 (135)
.+..+|||+|||..+++++|+++|..|| .|..+.++.+ .+|+|||+|.+.++|.+|+..|++..+. |+.|+|.
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 192 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 192 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEE
Confidence 4578999999999999999999999999 9999998654 2579999999999999999999999999 9999999
Q ss_pred eeCCC
Q 032702 113 YAKPR 117 (135)
Q Consensus 113 ~a~~~ 117 (135)
+++++
T Consensus 193 ~a~~~ 197 (198)
T 1qm9_A 193 FSKST 197 (198)
T ss_dssp EECCC
T ss_pred eeccc
Confidence 99864
No 193
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.60 E-value=1.1e-14 Score=100.42 Aligned_cols=78 Identities=22% Similarity=0.356 Sum_probs=71.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccC-CeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeC-CeEEEEE
Q 032702 35 EPSTNLFVSGLSKRTTDETLRDTFSAFG-EVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLD-GWVIFVE 112 (135)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~-g~~l~v~ 112 (135)
.+..+|||+|||.++++++|+++|..|| .|..+.++.. .+|+|||+|.+.++|.+|+..|++..+. |+.|+|.
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~ 223 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 223 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEE
Confidence 4568999999999999999999999999 9999998653 3579999999999999999999999999 9999999
Q ss_pred eeCCC
Q 032702 113 YAKPR 117 (135)
Q Consensus 113 ~a~~~ 117 (135)
+++++
T Consensus 224 ~a~~~ 228 (229)
T 2adc_A 224 FSKST 228 (229)
T ss_dssp ECSSC
T ss_pred EecCC
Confidence 99874
No 194
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.59 E-value=5.9e-15 Score=104.73 Aligned_cols=84 Identities=15% Similarity=0.370 Sum_probs=71.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccC-CeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEee
Q 032702 36 PSTNLFVSGLSKRTTDETLRDTFSAFG-EVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYA 114 (135)
Q Consensus 36 ~~~~v~v~nlp~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 114 (135)
...+|||+|||..+++++|+++|..|| .|..+.++.+. .+.++|+|||+|.+.++|..|+..|++..+.|+.|.|.++
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLR-FNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 467999999999999999999999999 99999998885 4778999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 032702 115 KPRQPP 120 (135)
Q Consensus 115 ~~~~~~ 120 (135)
.+....
T Consensus 195 ~~~~~~ 200 (292)
T 2ghp_A 195 NPLEKS 200 (292)
T ss_dssp CCC---
T ss_pred CCCccc
Confidence 876654
No 195
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.58 E-value=1.3e-14 Score=101.85 Aligned_cols=83 Identities=33% Similarity=0.424 Sum_probs=74.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCC-ceeC---CeEEEE
Q 032702 36 PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDG-KFLD---GWVIFV 111 (135)
Q Consensus 36 ~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~-~~~~---g~~l~v 111 (135)
+..+|||+|||..+++++|+++|..||.|..+.++.+ .+|.++|+|||+|.+.++|.+|+..|++ ..+. ++.|.|
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 3569999999999999999999999999999999999 6899999999999999999999999954 4444 899999
Q ss_pred EeeCCCCC
Q 032702 112 EYAKPRQP 119 (135)
Q Consensus 112 ~~a~~~~~ 119 (135)
.++.+...
T Consensus 174 ~~~~~~~~ 181 (261)
T 3sde_A 174 EPMEQFDD 181 (261)
T ss_dssp EECCCEES
T ss_pred eeccccCc
Confidence 99987654
No 196
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.57 E-value=6e-15 Score=100.35 Aligned_cols=78 Identities=12% Similarity=0.143 Sum_probs=67.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCe--EEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCe----E
Q 032702 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEV--VHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGW----V 108 (135)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i--~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~----~ 108 (135)
.+..+|||+|||+.+++++|+++|..||.| ..+.+..+. +..+|+|||+|.+.++|..|+..||+..+.|. +
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p 198 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYP 198 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcc
Confidence 456799999999999999999999999998 888887763 45569999999999999999999999998776 4
Q ss_pred EEEEee
Q 032702 109 IFVEYA 114 (135)
Q Consensus 109 l~v~~a 114 (135)
+.|.++
T Consensus 199 ~~vk~~ 204 (205)
T 3tyt_A 199 YTLKLC 204 (205)
T ss_dssp EECEEE
T ss_pred eEEEec
Confidence 555553
No 197
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.56 E-value=3e-14 Score=87.20 Aligned_cols=82 Identities=23% Similarity=0.398 Sum_probs=69.5
Q ss_pred CCCCeEEEcCC--CCCCC--------HHHHHHHhhccCCeEEEEEeecCCC--CCcccEEEEEeCCHHHHHHHHHhhCCc
Q 032702 35 EPSTNLFVSGL--SKRTT--------DETLRDTFSAFGEVVHAKIVKHRES--GYSKGFGFVKYATLEAAGKAIEGMDGK 102 (135)
Q Consensus 35 ~~~~~v~v~nl--p~~~~--------~~~l~~~f~~~g~i~~~~~~~~~~~--~~~~g~afv~f~~~~~a~~a~~~l~~~ 102 (135)
.++..|.+.|+ |.... +++|++.|.+||.|..+.++.++.+ +.++|++||+|.+.++|.+|+..|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 35678888887 33333 3689999999999999999887644 367899999999999999999999999
Q ss_pred eeCCeEEEEEeeCC
Q 032702 103 FLDGWVIFVEYAKP 116 (135)
Q Consensus 103 ~~~g~~l~v~~a~~ 116 (135)
.+.|+.|+|.++..
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999999854
No 198
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.55 E-value=3.4e-15 Score=91.34 Aligned_cols=72 Identities=22% Similarity=0.426 Sum_probs=63.0
Q ss_pred EcCCCCCCCHHHHHHHh------------hccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEE
Q 032702 42 VSGLSKRTTDETLRDTF------------SAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVI 109 (135)
Q Consensus 42 v~nlp~~~~~~~l~~~f------------~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l 109 (135)
+.+|++.+++++|++.| .+||.|..+.++.+. ++.++|+|||+|.+.++|.+|+..|||..+.|+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 45667777777777666 999999999999874 57889999999999999999999999999999999
Q ss_pred EEEee
Q 032702 110 FVEYA 114 (135)
Q Consensus 110 ~v~~a 114 (135)
+|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 199
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.54 E-value=6e-14 Score=92.03 Aligned_cols=77 Identities=25% Similarity=0.500 Sum_probs=67.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcc----C-------CeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCcee
Q 032702 36 PSTNLFVSGLSKRTTDETLRDTFSAF----G-------EVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFL 104 (135)
Q Consensus 36 ~~~~v~v~nlp~~~~~~~l~~~f~~~----g-------~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~ 104 (135)
+.++|||+|||.++++++|+++|..| | .+..+.+.. .+|+|||+|.+.++|.+|+ .+++..+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET------TTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC------CCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 46799999999999999999999999 6 667766543 4689999999999999999 7999999
Q ss_pred CCeEEEEEeeCCCCC
Q 032702 105 DGWVIFVEYAKPRQP 119 (135)
Q Consensus 105 ~g~~l~v~~a~~~~~ 119 (135)
.|+.|.|.++.....
T Consensus 76 ~g~~i~v~~~~~~~~ 90 (172)
T 2g4b_A 76 QGQSLKIRRPHDYQP 90 (172)
T ss_dssp TTEECEEECCSSCCC
T ss_pred cCceeeecCCcccCC
Confidence 999999999876544
No 200
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.54 E-value=8.2e-14 Score=86.95 Aligned_cols=81 Identities=17% Similarity=0.301 Sum_probs=69.7
Q ss_pred CCCeEEEcCCCC--C---CCHHHHHHHhhccCCeEEEEEeecCC----CCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 032702 36 PSTNLFVSGLSK--R---TTDETLRDTFSAFGEVVHAKIVKHRE----SGYSKGFGFVKYATLEAAGKAIEGMDGKFLDG 106 (135)
Q Consensus 36 ~~~~v~v~nlp~--~---~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g 106 (135)
++.+|+|.|+-. + --+++|++.|.+||.|..+.++.++. ++..+|++||+|.+.++|.+|+..|||..+.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 567899998742 2 23578999999999999999988754 35678999999999999999999999999999
Q ss_pred eEEEEEeeCC
Q 032702 107 WVIFVEYAKP 116 (135)
Q Consensus 107 ~~l~v~~a~~ 116 (135)
+.|+|.++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999853
No 201
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.53 E-value=1.3e-13 Score=92.27 Aligned_cols=77 Identities=25% Similarity=0.485 Sum_probs=66.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcc----C-------CeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCcee
Q 032702 36 PSTNLFVSGLSKRTTDETLRDTFSAF----G-------EVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFL 104 (135)
Q Consensus 36 ~~~~v~v~nlp~~~~~~~l~~~f~~~----g-------~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~ 104 (135)
..++|||+|||+++++++|+++|..| | .|..+.+ +..+|+|||+|.+.++|.+|+ .|++..+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 46799999999999999999999999 4 5565554 345689999999999999999 7999999
Q ss_pred CCeEEEEEeeCCCCC
Q 032702 105 DGWVIFVEYAKPRQP 119 (135)
Q Consensus 105 ~g~~l~v~~a~~~~~ 119 (135)
.|+.|+|.++.....
T Consensus 76 ~g~~i~v~~~~~~~~ 90 (198)
T 2yh0_A 76 QGQSLKIRRPHDYQP 90 (198)
T ss_dssp TTEEEEEECCCCCCC
T ss_pred cCceEEEeCCCCCCC
Confidence 999999999976643
No 202
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=6.8e-13 Score=80.44 Aligned_cols=68 Identities=19% Similarity=0.281 Sum_probs=59.1
Q ss_pred CCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEeeCCCCCCC
Q 032702 47 KRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKPRQPPT 121 (135)
Q Consensus 47 ~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~~~~~ 121 (135)
..+++++|+++|.+||.|..+.++ +..+|||||+|.+.++|..|+..+++ +.++.|+|.|++++....
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~~~~ 94 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQPQDA 94 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCCCCC
Confidence 568999999999999999999987 35688999999999999999998554 678999999998776543
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.46 E-value=2.7e-13 Score=98.47 Aligned_cols=77 Identities=19% Similarity=0.339 Sum_probs=65.3
Q ss_pred CCCCCCeEEEcC--CCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCcee---CCe
Q 032702 33 QAEPSTNLFVSG--LSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFL---DGW 107 (135)
Q Consensus 33 ~~~~~~~v~v~n--lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~---~g~ 107 (135)
...++.+|||+| |+..+++++|+++|.+||.|..+.+.. .+|||||+|.+.++|++|++.|||..+ .|+
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~ 87 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 87 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCC
Confidence 456678999998 578999999999999999999887643 468999999999999999999999986 244
Q ss_pred --EEEEEeeC
Q 032702 108 --VIFVEYAK 115 (135)
Q Consensus 108 --~l~v~~a~ 115 (135)
.|.+.+..
T Consensus 88 ~~~ly~~~~~ 97 (345)
T 3tht_A 88 KITLYLNFVE 97 (345)
T ss_dssp EEECEEEECS
T ss_pred ceEEEEEEee
Confidence 57777764
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.38 E-value=6e-12 Score=77.97 Aligned_cols=77 Identities=21% Similarity=0.370 Sum_probs=63.5
Q ss_pred CCCCeEEEcCCCCCCC----------HHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCcee
Q 032702 35 EPSTNLFVSGLSKRTT----------DETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFL 104 (135)
Q Consensus 35 ~~~~~v~v~nlp~~~~----------~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~ 104 (135)
.++..|.+.|+=..-. +++|++.|.+||.|..+.+..+. .+|++||+|.+.++|.+|+..|||..+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 3455777776543222 24789999999999999886552 478999999999999999999999999
Q ss_pred CCeEEEEEeeC
Q 032702 105 DGWVIFVEYAK 115 (135)
Q Consensus 105 ~g~~l~v~~a~ 115 (135)
.|+.|+|.++.
T Consensus 81 ~GR~i~v~~~~ 91 (114)
T 3s6e_A 81 AGKMITAAYVP 91 (114)
T ss_dssp TTEECEEEEEC
T ss_pred CCEEEEEEEEc
Confidence 99999999986
No 205
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.27 E-value=2.9e-11 Score=75.38 Aligned_cols=77 Identities=19% Similarity=0.135 Sum_probs=66.8
Q ss_pred CCCCCCCeEEEcCCCCC-CCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCC-HHHHHHHHHhhC--CceeCCe
Q 032702 32 PQAEPSTNLFVSGLSKR-TTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYAT-LEAAGKAIEGMD--GKFLDGW 107 (135)
Q Consensus 32 ~~~~~~~~v~v~nlp~~-~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~-~~~a~~a~~~l~--~~~~~g~ 107 (135)
-....++.|||+||+++ ++.++|+++|..||.|..|.++.+.. .|||.|.+ ..+|..|+..++ +..+.|.
T Consensus 13 ~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~ 86 (121)
T 1owx_A 13 LEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNK 86 (121)
T ss_dssp CSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSS
T ss_pred ccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCc
Confidence 35577899999999999 99999999999999999999988754 69999999 899999999985 5568887
Q ss_pred EEEEEee
Q 032702 108 VIFVEYA 114 (135)
Q Consensus 108 ~l~v~~a 114 (135)
.+.++..
T Consensus 87 ~~~~evL 93 (121)
T 1owx_A 87 EVTWEVL 93 (121)
T ss_dssp SEEEEEC
T ss_pred EEEEEEC
Confidence 7777654
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.27 E-value=3e-11 Score=71.21 Aligned_cols=74 Identities=24% Similarity=0.352 Sum_probs=61.2
Q ss_pred CCCCeEEEcCCC----CC-CCH---HHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 032702 35 EPSTNLFVSGLS----KR-TTD---ETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDG 106 (135)
Q Consensus 35 ~~~~~v~v~nlp----~~-~~~---~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g 106 (135)
+++.+|+|.-.+ .. ..+ .+|...|.+||.+..+++..+ .+||+|.+.++|.+|+. |+|..+.|
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d--------~~fVtF~d~~sAlaAi~-mnG~~v~G 75 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED--------KMWVTFLEGSSALNVLS-LNGKELLN 75 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS--------SEEEEESSHHHHHHGGG-GTTCEETT
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC--------CEEEEECChHHHHHHHh-cCCeEeCC
Confidence 345577776554 12 332 578999999999999999877 38999999999999998 99999999
Q ss_pred eEEEEEeeCCC
Q 032702 107 WVIFVEYAKPR 117 (135)
Q Consensus 107 ~~l~v~~a~~~ 117 (135)
+.|+|+++.+.
T Consensus 76 r~LkV~lkt~d 86 (91)
T 2dnr_A 76 RTITIALKSPS 86 (91)
T ss_dssp EEEEEEECCCS
T ss_pred eEEEEEeCCCC
Confidence 99999999875
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.05 E-value=7.3e-10 Score=65.64 Aligned_cols=73 Identities=18% Similarity=0.259 Sum_probs=60.9
Q ss_pred CCCCeEEEcCCCCC------CCH---HHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeC
Q 032702 35 EPSTNLFVSGLSKR------TTD---ETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLD 105 (135)
Q Consensus 35 ~~~~~v~v~nlp~~------~~~---~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~ 105 (135)
+++.+|+|.-++++ ..+ .+|...|..||.+..+++..+ .+||+|.+.++|.+|+. |++..+.
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d--------~~fVtF~d~~sAl~AI~-ldG~~v~ 83 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG--------QMLVTFADSHSALSVLD-VDGMKVK 83 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT--------EEEEECSCSHHHHHHHH-GGGSEET
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC--------cEEEEEcChHHHHHHHh-cCCeeeC
Confidence 44568888877643 332 468899999999999999877 49999999999999998 9999999
Q ss_pred CeEEEEEeeCC
Q 032702 106 GWVIFVEYAKP 116 (135)
Q Consensus 106 g~~l~v~~a~~ 116 (135)
|+.|+|++..+
T Consensus 84 Gr~L~V~~k~~ 94 (95)
T 1ufw_A 84 GRAVKISGPSS 94 (95)
T ss_dssp TEEEEEECCCC
T ss_pred CeEEEEeccCC
Confidence 99999998654
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.05 E-value=7.2e-10 Score=75.78 Aligned_cols=67 Identities=19% Similarity=0.329 Sum_probs=59.6
Q ss_pred CCHHHHHHHhhccCCeEEEEEeecC----CCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEeeC
Q 032702 49 TTDETLRDTFSAFGEVVHAKIVKHR----ESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAK 115 (135)
Q Consensus 49 ~~~~~l~~~f~~~g~i~~~~~~~~~----~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 115 (135)
-.+++|.+.|.+||.|..+.+..+. .++..+|++||+|.+.++|.+|+..|+|.++.|+.|.|.++.
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 3557899999999999999998543 345889999999999999999999999999999999999975
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.86 E-value=4e-08 Score=59.50 Aligned_cols=74 Identities=15% Similarity=0.123 Sum_probs=66.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcc-----CCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeE
Q 032702 34 AEPSTNLFVSGLSKRTTDETLRDTFSAF-----GEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWV 108 (135)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~-----g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~ 108 (135)
....++|-+-+||..+++..++.+++.+ |.+..+.++.+- +-|+|+|.+...|.+|.-.|+|..+.|++
T Consensus 18 ~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~ 91 (117)
T 2l9w_A 18 KELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKV 91 (117)
T ss_dssp TTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEE
T ss_pred ccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeE
Confidence 3456788888999999999999999999 999999999884 38999999999999999899999999999
Q ss_pred EEEEe
Q 032702 109 IFVEY 113 (135)
Q Consensus 109 l~v~~ 113 (135)
|+|--
T Consensus 92 Lr~gT 96 (117)
T 2l9w_A 92 IRSGT 96 (117)
T ss_dssp EEEEC
T ss_pred EEecC
Confidence 99864
No 210
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.02 E-value=0.0002 Score=42.91 Aligned_cols=76 Identities=22% Similarity=0.247 Sum_probs=59.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhc-----cCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEE
Q 032702 35 EPSTNLFVSGLSKRTTDETLRDTFSA-----FGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVI 109 (135)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~-----~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l 109 (135)
.-..+|.|.|||+.+.++.|.-+|+. .|.+..+.... +-|+|+|.+...+++.++. ....+.+..|
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~L 76 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQL 76 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSBC
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeEE
Confidence 44569999999999999999999975 24677765432 3899999999999999983 3466888889
Q ss_pred EEEeeCCCCC
Q 032702 110 FVEYAKPRQP 119 (135)
Q Consensus 110 ~v~~a~~~~~ 119 (135)
.|....+...
T Consensus 77 sV~P~~~~~~ 86 (104)
T 2dhx_A 77 SLRPAPPRAP 86 (104)
T ss_dssp EEEECCCCCC
T ss_pred EEEcCCCCCc
Confidence 9987765554
No 211
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.98 E-value=7.3e-05 Score=44.00 Aligned_cols=67 Identities=15% Similarity=0.206 Sum_probs=56.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCC--cccEEEEEeCCHHHHHHHHHhhCCcee
Q 032702 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGY--SKGFGFVKYATLEAAGKAIEGMDGKFL 104 (135)
Q Consensus 38 ~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~--~~g~afv~f~~~~~a~~a~~~l~~~~~ 104 (135)
..|.|.+||+..+++++.+.+.....+....++....+.+ ..+.|||.|.+.+++....+.++|..+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F 70 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVF 70 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEE
Confidence 4688999999999999999999888777777777654332 347899999999999999999999975
No 212
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.97 E-value=0.00012 Score=43.89 Aligned_cols=76 Identities=11% Similarity=0.064 Sum_probs=61.1
Q ss_pred CCeEEEcCCCCCCCH-----HHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEE
Q 032702 37 STNLFVSGLSKRTTD-----ETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFV 111 (135)
Q Consensus 37 ~~~v~v~nlp~~~~~-----~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 111 (135)
..+|+|.||+..+-. ..++.+|..|+.+......+. ..-..|.|.+.++|.+|-..||+..+.|.+|+|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS------FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS------FKRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT------TTEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc------ceEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 358999999875522 467889999997766554433 236789999999999999999999999999999
Q ss_pred EeeCCCC
Q 032702 112 EYAKPRQ 118 (135)
Q Consensus 112 ~~a~~~~ 118 (135)
.++.+..
T Consensus 79 YFgq~~~ 85 (104)
T 1wey_A 79 YFAQTLH 85 (104)
T ss_dssp ECCCCSS
T ss_pred EecCCCC
Confidence 9997543
No 213
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.90 E-value=7.5e-05 Score=44.27 Aligned_cols=58 Identities=24% Similarity=0.300 Sum_probs=48.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhh
Q 032702 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99 (135)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l 99 (135)
.....+.++| ++|..+...+|..+|..|| -..+.++-|. .|||.|.+++.|..|+..+
T Consensus 12 ~p~r~HVf~l-~FP~ewKt~DI~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 12 QPKRDHVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CCCCCSEEEE-ECCTTCCHHHHHHHHTTTC-SCCCEEEETT-------EEEEECSCHHHHHHHHHHH
T ss_pred CCCCCeEEEE-eCChhhhhHHHHHHhhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 3455678888 9999999999999999998 4455566553 8999999999999999876
No 214
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.51 E-value=0.0002 Score=42.59 Aligned_cols=55 Identities=24% Similarity=0.299 Sum_probs=46.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhC
Q 032702 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100 (135)
Q Consensus 37 ~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~ 100 (135)
.+.++| ++|..+...+|..+|..|| ...+.++-|. .|||.|.+++.|..|+..+.
T Consensus 6 ~HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 6 DHVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred CeEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 457777 9999999999999999998 5566666663 89999999999999998764
No 215
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.39 E-value=0.00037 Score=41.34 Aligned_cols=70 Identities=13% Similarity=0.125 Sum_probs=53.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCC--cccEEEEEeCCHHHHHHHHHhhCCcee
Q 032702 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGY--SKGFGFVKYATLEAAGKAIEGMDGKFL 104 (135)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~--~~g~afv~f~~~~~a~~a~~~l~~~~~ 104 (135)
..+..|.|..||+..|++++.+.+...-.+....++....+.+ ..+.|||.|.+.++.....+.++|..+
T Consensus 7 ~~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F 78 (97)
T 2l08_A 7 HHSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIF 78 (97)
T ss_dssp CCCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEE
T ss_pred ccceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEE
Confidence 3456889999999999999988887665554444444433322 246799999999999999999999875
No 216
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.30 E-value=0.002 Score=39.66 Aligned_cols=74 Identities=18% Similarity=0.282 Sum_probs=56.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC-eEEEE
Q 032702 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDG-WVIFV 111 (135)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g-~~l~v 111 (135)
+.....-|.|-++|+.. -..+...|.+||.|.+...... ..+-+|.|.+..+|++|+. .|+..+.+ --|-|
T Consensus 20 ~~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~------~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV 91 (119)
T 1wwh_A 20 DHLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNT------GNWMHIRYQSKLQARKALS-KDGRIFGESIMIGV 91 (119)
T ss_dssp -CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSS------SSEEEEEESSHHHHHHHHT-TTTCEETTTEECEE
T ss_pred CCCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCC------CCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEE
Confidence 34456678888999886 4557788999999988776222 2389999999999999998 69988874 56677
Q ss_pred Eee
Q 032702 112 EYA 114 (135)
Q Consensus 112 ~~a 114 (135)
...
T Consensus 92 ~p~ 94 (119)
T 1wwh_A 92 KPC 94 (119)
T ss_dssp EEC
T ss_pred EEC
Confidence 664
No 217
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.44 E-value=0.0016 Score=49.11 Aligned_cols=56 Identities=14% Similarity=0.339 Sum_probs=42.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHh
Q 032702 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98 (135)
Q Consensus 37 ~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~ 98 (135)
.+.|+|. .|..+++.+|.+.|.+||.|..+.+..+. | -|+.|+|.+.+++..++..
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g---~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF--G---LYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS--S---EEEEEECC---CCHHHHSS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC--C---eEEEEEeCCHHHHHHHHhc
Confidence 3799997 79999999999999999999998876542 2 4999999999998877653
No 218
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.36 E-value=0.038 Score=34.47 Aligned_cols=77 Identities=14% Similarity=0.258 Sum_probs=54.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeEEE-EEee------------cCCCC-CcccEEEEEeCCHHHHHHHHHhhCCce
Q 032702 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHA-KIVK------------HRESG-YSKGFGFVKYATLEAAGKAIEGMDGKF 103 (135)
Q Consensus 38 ~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~-~~~~------------~~~~~-~~~g~afv~f~~~~~a~~a~~~l~~~~ 103 (135)
..|.|-+.|++.... +...|++||.|.+- .... .+... ....+-.|.|.+..+|.+|+. .||..
T Consensus 8 ~~VtVFGFp~~~~~~-VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETMANQ-VIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGAV 85 (132)
T ss_dssp CEEEEECCCGGGHHH-HHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTCE
T ss_pred eEEEEEecCHHHHHH-HHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCeE
Confidence 456677888777655 56678999988662 1110 00001 134588999999999999998 79999
Q ss_pred eCCeEEEEEeeCC
Q 032702 104 LDGWVIFVEYAKP 116 (135)
Q Consensus 104 ~~g~~l~v~~a~~ 116 (135)
+.|.-|-|.+..+
T Consensus 86 i~G~mIGV~Py~~ 98 (132)
T 3p3d_A 86 FNGVLLGVIPYTK 98 (132)
T ss_dssp ETTEECEEEECCH
T ss_pred eCcEEEEEEECCH
Confidence 9998888887753
No 219
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=95.12 E-value=0.032 Score=35.36 Aligned_cols=34 Identities=15% Similarity=0.076 Sum_probs=26.8
Q ss_pred EEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCc
Q 032702 67 AKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGK 102 (135)
Q Consensus 67 ~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~ 102 (135)
+.+..+. ...+|++||+|.+.++|++|+..+++.
T Consensus 3 ~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~~ 36 (158)
T 2kn4_A 3 YKLILNG--KTLKGETTTEAVDAATAEKVFKQYAND 36 (158)
T ss_dssp EEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred EEEEecC--ccccchhHHHHHHHHhHHHHHHhhccc
Confidence 3455543 357899999999999999999887754
No 220
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=95.09 E-value=0.01 Score=37.47 Aligned_cols=40 Identities=18% Similarity=0.067 Sum_probs=36.3
Q ss_pred CCcccEEEEEeCCHHHHHHHHHhh-CCceeCCeEEEEEeeCC
Q 032702 76 GYSKGFGFVKYATLEAAGKAIEGM-DGKFLDGWVIFVEYAKP 116 (135)
Q Consensus 76 ~~~~g~afv~f~~~~~a~~a~~~l-~~~~~~g~~l~v~~a~~ 116 (135)
.+.+|+++++|.+.++|++|++.+ ++..+.| .+.+.++..
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 456899999999999999999999 9999999 999998865
No 221
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=94.12 E-value=0.26 Score=37.51 Aligned_cols=56 Identities=23% Similarity=0.323 Sum_probs=45.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhC
Q 032702 36 PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100 (135)
Q Consensus 36 ~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~ 100 (135)
..+.++++ +|..+...+|.++|..||.+ .+.++.+. .+||.|.+.+.+..++..+.
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widdt-------~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSSS-------EEEEECSCHHHHHHHHHHHT
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcCC-------eEEEEECCHHHHHHHHHHHH
Confidence 34577777 89999999999999999953 44444442 89999999999999999885
No 222
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=84.13 E-value=3.6 Score=22.45 Aligned_cols=68 Identities=16% Similarity=0.242 Sum_probs=41.3
Q ss_pred eEEEc-CCCCCCCHHHHHHHhhc-cC----CeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEE
Q 032702 39 NLFVS-GLSKRTTDETLRDTFSA-FG----EVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVE 112 (135)
Q Consensus 39 ~v~v~-nlp~~~~~~~l~~~f~~-~g----~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 112 (135)
++||. +-...+...+|..++.. .| +|-.+.+... +.||+-.. ..+..++..|.+..+.|+.+.++
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEILN-GKGPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEECT-TCHHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeCC--------cEEEEECH-HHHHHHHHHhccccCcCceEEEE
Confidence 45553 33345555666666653 32 4566666433 88998875 46778888899999999999988
Q ss_pred eeC
Q 032702 113 YAK 115 (135)
Q Consensus 113 ~a~ 115 (135)
.++
T Consensus 73 ~~~ 75 (76)
T 2g0c_A 73 KAN 75 (76)
T ss_dssp ECC
T ss_pred ECC
Confidence 764
No 223
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=44.15 E-value=47 Score=19.43 Aligned_cols=50 Identities=14% Similarity=0.278 Sum_probs=27.9
Q ss_pred CCCCHHHHHHHhh-ccC---CeEEE-EEeecCCCCCcccEEEEEeCCHHHHHHHHH
Q 032702 47 KRTTDETLRDTFS-AFG---EVVHA-KIVKHRESGYSKGFGFVKYATLEAAGKAIE 97 (135)
Q Consensus 47 ~~~~~~~l~~~f~-~~g---~i~~~-~~~~~~~~~~~~g~afv~f~~~~~a~~a~~ 97 (135)
...+..++++-+. .|+ ++..+ .+......|+..|+|+| |++.+.+.+.-.
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~Ep 82 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQVEQ 82 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhhCc
Confidence 4556666665553 343 33443 34444344556677766 777777666544
No 224
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=41.80 E-value=49 Score=19.03 Aligned_cols=58 Identities=9% Similarity=0.155 Sum_probs=44.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhC
Q 032702 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100 (135)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~ 100 (135)
...+-|-|-|+|..+-..++--.....|.--.|...- |.+.+.|.+.++..-|+..|-
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqkll 67 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQKLL 67 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHHHE
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHHHH
Confidence 4567788889999999888777777777555555432 389999999999988887653
No 225
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=40.97 E-value=55 Score=19.35 Aligned_cols=48 Identities=15% Similarity=0.074 Sum_probs=26.5
Q ss_pred CCCCHHHHHHHhh-ccC---CeEEE-EEeecCCCCCcccEEEEEeCCHHHHHHH
Q 032702 47 KRTTDETLRDTFS-AFG---EVVHA-KIVKHRESGYSKGFGFVKYATLEAAGKA 95 (135)
Q Consensus 47 ~~~~~~~l~~~f~-~~g---~i~~~-~~~~~~~~~~~~g~afv~f~~~~~a~~a 95 (135)
...+..++++-+. .|+ ++..+ .+......|+..|+|+| |++.+.|.+.
T Consensus 37 ~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk~ 89 (107)
T 2v94_A 37 PTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLYI 89 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 3455666665553 343 33333 34444344566777766 7777777654
No 226
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=40.91 E-value=54 Score=19.22 Aligned_cols=48 Identities=8% Similarity=0.131 Sum_probs=26.6
Q ss_pred CCCCHHHHHHHhh-ccC---CeEEE-EEeecCCCCCcccEEEEEeCCHHHHHHH
Q 032702 47 KRTTDETLRDTFS-AFG---EVVHA-KIVKHRESGYSKGFGFVKYATLEAAGKA 95 (135)
Q Consensus 47 ~~~~~~~l~~~f~-~~g---~i~~~-~~~~~~~~~~~~g~afv~f~~~~~a~~a 95 (135)
...+..++++-+. .|+ ++..+ .+......|+..|+|+| |++.+.+.+.
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk~ 80 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMATI 80 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 4556666665553 333 33333 34444444566677766 7777766543
No 227
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=38.69 E-value=34 Score=23.56 Aligned_cols=34 Identities=12% Similarity=0.215 Sum_probs=26.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeec
Q 032702 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKH 72 (135)
Q Consensus 38 ~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~ 72 (135)
.-+.|+|+|..++...|.+++.. ..+..+.++..
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm~Q 144 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVFLVQ 144 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEEEee
Confidence 45678999999999999999977 66665555443
No 228
>2jya_A AGR_C_3324P, uncharacterized protein ATU1810; protein with unknown function ATU1810, ontario centre for ST proteomics, OCSP; NMR {Agrobacterium tumefaciens str}
Probab=36.96 E-value=65 Score=19.03 Aligned_cols=52 Identities=21% Similarity=0.185 Sum_probs=23.1
Q ss_pred CCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEeeCCCCCCCCCCCCCCCCcCCC
Q 032702 75 SGYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKPRQPPTLPSQNNTNFQYGR 134 (135)
Q Consensus 75 ~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~ 134 (135)
++....-.-+.|.+.++|.+.++. +|.. -.|.. +......+.+..-||.+.|
T Consensus 47 S~D~~~qv~L~F~skE~AiayAek-~G~~-----y~V~e--p~~~~~r~ksYadNF~~~r 98 (106)
T 2jya_A 47 SSDMKQQVKLTFETQEQAEAYAQR-KGIE-----YRVIL--PKEATRKVVSYTDNFRFNR 98 (106)
T ss_dssp CCCSEEEEEEEESSHHHHHHHHHH-HTCE-----EEECC--CTTC---------------
T ss_pred CCCccccceEecCCHHHHHHHHHH-cCCE-----EEEeC--CCcCcCCcCchHHhCCcCC
Confidence 344555668899999999998873 4432 23433 3333334445555555443
No 229
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=36.89 E-value=19 Score=24.92 Aligned_cols=35 Identities=11% Similarity=0.078 Sum_probs=26.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeec
Q 032702 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKH 72 (135)
Q Consensus 38 ~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~ 72 (135)
....|+|||+.++...|.+++.....+..+.++..
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m~Q 149 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFMLQ 149 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEEee
Confidence 35678999999999999999976555666655553
No 230
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=32.08 E-value=46 Score=22.54 Aligned_cols=32 Identities=9% Similarity=0.077 Sum_probs=23.8
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCeEEEEEe
Q 032702 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIV 70 (135)
Q Consensus 39 ~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~ 70 (135)
.+.|+|+|+.++...+.+++.....+..+.++
T Consensus 92 ~~vvsNlPY~i~~~il~~ll~~~~~~~~~~~m 123 (252)
T 1qyr_A 92 LRVFGNLPYNISTPLMFHLFSYTDAIADMHFM 123 (252)
T ss_dssp EEEEEECCTTTHHHHHHHHHTTGGGEEEEEEE
T ss_pred eEEEECCCCCccHHHHHHHHhcCCCcceEEEE
Confidence 57789999999999888888754445555444
No 231
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=31.78 E-value=56 Score=25.57 Aligned_cols=56 Identities=13% Similarity=0.209 Sum_probs=38.7
Q ss_pred CCCCCCCHHHHHHHhh----ccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhC
Q 032702 44 GLSKRTTDETLRDTFS----AFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100 (135)
Q Consensus 44 nlp~~~~~~~l~~~f~----~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~ 100 (135)
..+.+.+..+|..+|. .+|-|.++.+...+ -.....++++.|.+.+++..++..+-
T Consensus 350 ~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P-~P~~~~~~~~~f~d~~~a~~av~~i~ 409 (658)
T 4bby_A 350 QGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRP-TPEYQKYGSVAFPNFEQGVACLREIA 409 (658)
T ss_dssp CCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEE-CCSEEEEEEEEESSHHHHHHHHHHHH
T ss_pred cccccCCCcCHHHHhccCCCcCcceeeeeeeecc-CCccccccccccCCchhhhhhHHHHH
Confidence 3455555556777773 46778888776553 23455688999999999988887653
No 232
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=30.70 E-value=1e+02 Score=19.40 Aligned_cols=48 Identities=21% Similarity=0.311 Sum_probs=26.3
Q ss_pred CCCCHHHHHHHhhc-cC---CeEEE-EEeecCCCCCcccEEEEEeCCHHHHHHH
Q 032702 47 KRTTDETLRDTFSA-FG---EVVHA-KIVKHRESGYSKGFGFVKYATLEAAGKA 95 (135)
Q Consensus 47 ~~~~~~~l~~~f~~-~g---~i~~~-~~~~~~~~~~~~g~afv~f~~~~~a~~a 95 (135)
...+..+|++-+.. |+ ++..+ .+......|...|||+| |++.+.+...
T Consensus 31 aTpSk~eIrekLAkmy~~~~d~VvV~g~rT~fGggkStGfa~I-YDs~e~aKk~ 83 (149)
T 2xzm_P 31 PTASKEKIREELAKQLKVDARNVVVYGFSTQYGGGKSTGFALV-YDNQQYLLKY 83 (149)
T ss_dssp CSCCHHHHHHHHHHHHTCCGGGEEEEEECCCSSSSEEEEEEEE-ESCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-eCCHHHHHhh
Confidence 35556666666643 44 33333 34333334556677776 7777776654
No 233
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=29.00 E-value=51 Score=19.17 Aligned_cols=47 Identities=17% Similarity=0.188 Sum_probs=20.4
Q ss_pred CCCHHHHHHHhh-ccCCeEEEEEeecCC----CCCcccEEEEEeCCHHHHHHH
Q 032702 48 RTTDETLRDTFS-AFGEVVHAKIVKHRE----SGYSKGFGFVKYATLEAAGKA 95 (135)
Q Consensus 48 ~~~~~~l~~~f~-~~g~i~~~~~~~~~~----~~~~~g~afv~f~~~~~a~~a 95 (135)
..+..++++-+. .|+.-.++.++..-. .|+..|+|+| |++.+.+.+.
T Consensus 30 tpsk~eirekLA~~~~~~~~~vvv~~~~t~fG~gks~G~a~I-Yds~e~~kk~ 81 (98)
T 2g1d_A 30 TPSREEIKELIAKHEGVDKELVIVDNNKQLTGKHEIEGYTKI-YADKPSAMLY 81 (98)
T ss_dssp CCCHHHHHHHHHHHHHSCSTTEECCCCCCCSSSSEEEEEEEE-ESHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 445556555553 333212222222222 2345566655 5555554443
No 234
>2lju_A Putative oxidoreductase; structural genomics, seattle structural GENO center for infectious disease, ssgcid; NMR {Ehrlichia chaffeensis}
Probab=28.83 E-value=94 Score=18.39 Aligned_cols=51 Identities=20% Similarity=0.079 Sum_probs=31.1
Q ss_pred CCcccEEEEEeCCHHHHHHHHHhhCCceeCCeEEEEEeeCCCCCCCCCCCCCCCCcCCC
Q 032702 76 GYSKGFGFVKYATLEAAGKAIEGMDGKFLDGWVIFVEYAKPRQPPTLPSQNNTNFQYGR 134 (135)
Q Consensus 76 ~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~ 134 (135)
+....-.-+.|.+.++|.+.++ -+|. .-.|...+. ....+.+..-||.+.|
T Consensus 56 ~D~~~qv~L~F~skE~AiayAe-k~G~-----~y~V~ep~~--~~~r~ksYadNF~~~r 106 (108)
T 2lju_A 56 HDTKQQVCLSFTTRELAIAYAV-AHKI-----DYTVLQDNP--RTIVPKSYADNFTKPR 106 (108)
T ss_dssp CCCCCCSCEEESSHHHHHHHHH-HTTC-----EEEEECSSC--CCCCCCCCCCCCCCCC
T ss_pred CCccccceEecCCHHHHHHHHH-HcCC-----EEEEecCCc--ccCCcCchHHHCCccC
Confidence 3344445789999999999888 4543 334444333 3344556666776654
No 235
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=28.16 E-value=61 Score=18.29 Aligned_cols=36 Identities=22% Similarity=0.216 Sum_probs=26.6
Q ss_pred CeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhhCCce
Q 032702 63 EVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKF 103 (135)
Q Consensus 63 ~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 103 (135)
++..+.+... -.||.||++...++...++....+..
T Consensus 39 ~i~~v~vP~~-----fPGYVfVe~~~~~~~~~~I~~t~gV~ 74 (92)
T 3lpe_A 39 DVYSILASES-----LKGYVLVEAETKGDVEELIKGMPRVR 74 (92)
T ss_dssp CEEEEEECTT-----STTEEEEEESSHHHHHHHHTTCTTEE
T ss_pred cEEEEEEecc-----cCCEEEEEEecchhHHHHHHCCCCce
Confidence 3555555432 57899999999999888888777664
No 236
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=27.91 E-value=68 Score=16.43 Aligned_cols=54 Identities=17% Similarity=0.102 Sum_probs=40.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHh
Q 032702 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98 (135)
Q Consensus 38 ~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~ 98 (135)
.++.|.++....-...+++.+.. ..+..+.+... .+.+.|.|.+.+....+++.
T Consensus 7 ~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~------~~~~~v~~~~~~~i~~~i~~ 60 (73)
T 3fry_A 7 IVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN------EAVVAGNKEDVDKYIKAVEA 60 (73)
T ss_dssp EEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS------EEEEEEEGGGHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc------CCEEEEEECCHHHHHHHHHH
Confidence 46778888888888899999988 87888777443 23677787766666667664
No 237
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=27.89 E-value=22 Score=24.27 Aligned_cols=33 Identities=15% Similarity=0.128 Sum_probs=25.6
Q ss_pred EEEcCCCCCCCHHHHHHHhhccCCeEEEEEeec
Q 032702 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKH 72 (135)
Q Consensus 40 v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~ 72 (135)
..|+|+|+.++...|.+++.....+..+.++..
T Consensus 99 ~vv~NlPY~is~~il~~ll~~~~~~~~~~lm~Q 131 (255)
T 3tqs_A 99 RVVGNLPYNISTPLLFHLFSQIHCIEDMHFMLQ 131 (255)
T ss_dssp EEEEECCHHHHHHHHHHHHHTGGGEEEEEEEEE
T ss_pred EEEecCCcccCHHHHHHHHhCCCChheEEEEEe
Confidence 368999999999999999987666666655543
No 238
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Probab=26.52 E-value=1.2e+02 Score=18.76 Aligned_cols=48 Identities=25% Similarity=0.477 Sum_probs=28.2
Q ss_pred CCCCHHHHHHHhh-ccC---CeEEE-EEeecCCCCCcccEEEEEeCCHHHHHHH
Q 032702 47 KRTTDETLRDTFS-AFG---EVVHA-KIVKHRESGYSKGFGFVKYATLEAAGKA 95 (135)
Q Consensus 47 ~~~~~~~l~~~f~-~~g---~i~~~-~~~~~~~~~~~~g~afv~f~~~~~a~~a 95 (135)
...+..+|++-+. .|+ ++..+ .+......|+..|||.| |++.+.+...
T Consensus 33 aTpsr~eIrekLAk~y~~~~d~VvV~g~rT~fG~gkstGfa~I-Yds~d~akk~ 85 (135)
T 3u5c_Y 33 ANVSKDELREKLAEVYKAEKDAVSVFGFRTQFGGGKSVGFGLV-YNSVAEAKKF 85 (135)
T ss_dssp CCCCHHHHHHHHHTTTTSCGGGEEEEEEEECTTSSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEeccCCceEEEEEEE-eCCHHHHHhc
Confidence 3566777777774 455 33333 34444344556677766 7777776654
No 239
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=25.96 E-value=45 Score=22.48 Aligned_cols=31 Identities=16% Similarity=0.008 Sum_probs=22.8
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCeEEEEE
Q 032702 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKI 69 (135)
Q Consensus 39 ~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~ 69 (135)
.+.|+|+|..++...|.+++.....+..+.+
T Consensus 97 ~~vv~NlPy~i~~~il~~ll~~~~~~~~~~~ 127 (249)
T 3ftd_A 97 LKVVGNLPYNVASLIIENTVYNKDCVPLAVF 127 (249)
T ss_dssp EEEEEECCTTTHHHHHHHHHHTGGGCSEEEE
T ss_pred cEEEEECchhccHHHHHHHHhcCCCCceEEE
Confidence 4778999999999999998876433333333
No 240
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=25.87 E-value=46 Score=24.03 Aligned_cols=22 Identities=14% Similarity=0.160 Sum_probs=18.6
Q ss_pred eEEEcCCCCCCCHHHHHHHhhc
Q 032702 39 NLFVSGLSKRTTDETLRDTFSA 60 (135)
Q Consensus 39 ~v~v~nlp~~~~~~~l~~~f~~ 60 (135)
...|+|||..++...|.+++..
T Consensus 144 ~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 144 FLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEEECCSTTHHHHHHHHHHH
T ss_pred eEEEEECCCchHHHHHHHHHHh
Confidence 4678999999999988888763
No 241
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=31.28 E-value=15 Score=21.72 Aligned_cols=63 Identities=16% Similarity=0.092 Sum_probs=35.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCc-ccEEEEEeCCHHHHHHHHHhhCCce
Q 032702 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYS-KGFGFVKYATLEAAGKAIEGMDGKF 103 (135)
Q Consensus 37 ~~~v~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~-~g~afv~f~~~~~a~~a~~~l~~~~ 103 (135)
..+|-+... ..++++..+..+.+ +..+.+.....+|+. --.-+-.|.+.++|..|+..|....
T Consensus 25 ~YTLQL~a~---~~~~~l~~f~~~~~-l~~~~v~~t~rnGk~WyvVlyG~Y~s~~~A~~A~~~LP~~l 88 (106)
T 2lfv_A 25 HYTLQLSSS---SNYDNLNGWAKKEN-LKNYVVYETTRNGQPWYVLVSGVYASKEEAKKAVSTLPADV 88 (106)
Confidence 344444333 34455666666665 333444433233332 1235567889999999999887543
No 242
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=20.44 E-value=1.8e+02 Score=18.71 Aligned_cols=56 Identities=13% Similarity=0.179 Sum_probs=35.2
Q ss_pred eEEEcCCCC---------CCCHHHHHHHh--hccCCeEEEEEeecCCCCCcccEEEEEeC-CHHHHHHHHH
Q 032702 39 NLFVSGLSK---------RTTDETLRDTF--SAFGEVVHAKIVKHRESGYSKGFGFVKYA-TLEAAGKAIE 97 (135)
Q Consensus 39 ~v~v~nlp~---------~~~~~~l~~~f--~~~g~i~~~~~~~~~~~~~~~g~afv~f~-~~~~a~~a~~ 97 (135)
.+.|-|+|. ......|++.| ..|..+....+.-. .-+.|++.|.|. +..-...|+.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~---~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNY---LGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECS---SBEEEEEEEECCSSHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccC---CCCceeEEEEecCChHHHHHHHH
Confidence 445667775 13446788866 88987665444322 237789999998 4554455544
Done!